BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020812
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Gmp From Brucella Melitensis
Length = 293
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 27/230 (11%)
Query: 72 FMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILI-RYPGPSGRRNILI 129
+G G+S G+PR++ KC +P N KNRR S+L+ RY ++I
Sbjct: 33 LLGCGSSPGVPRIN---GDWGKC-------DPKNPKNRRRRASLLVERYDAEGNNTVVVI 82
Query: 130 DAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189
D G F + G+ +DA + TH HAD I G+DDLR + + R + +Y
Sbjct: 83 DTGPDFRMQMI----DSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLT 138
Query: 190 FEVMKKTHYYLVDTSGIIPGAAVSEL--QFNIIDEEPFTVQD----LKITPLPVWHGAGY 243
+ T Y +T G++ + +I E PF+++ ++ P HG
Sbjct: 139 RNRLYDTFGYCFETP---VGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHG-DI 194
Query: 244 RSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGL 293
SLGFR G++ Y +DVS PE++ +++D ++LI+ AL+ R +HF L
Sbjct: 195 ESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQ-YRPHPSHFSL 243
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Gmp
pdb|3PY5|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Amp
pdb|3QH8|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Amp From Brucella Melitensis, Long Wavelength
Synchrotron Data
Length = 274
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 23/228 (10%)
Query: 72 FMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILI-RYPGPSGRRNILI 129
+G G+S G+PR++ KC +P N KNRR S+L+ RY ++I
Sbjct: 14 LLGCGSSPGVPRIN---GDWGKC-------DPKNPKNRRRRASLLVERYDAEGNNTVVVI 63
Query: 130 DAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189
D G F + G+ +DA + TH HAD I G+DDLR + + R + +Y
Sbjct: 64 DTGPDFRMQMI----DSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLT 119
Query: 190 FEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD----LKITPLPVWHGAGYRS 245
+ T Y +T + + +I E PF+++ ++ P HG S
Sbjct: 120 RNRLYDTFGYCFETPVGSSYPPILSMH-DIAPETPFSIEGAGGAIRFEPFSQVHG-DIES 177
Query: 246 LGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGL 293
LGFR G++ Y +DVS PE++ +++D ++LI+ AL+ R +HF L
Sbjct: 178 LGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQ-YRPHPSHFSL 224
>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12
pdb|3G1P|B Chain B, Crystals Structure Of Phnp From E.Coli K-12
pdb|3P2U|A Chain A, Crystal Structure Of Phnp In Complex With Orthovanadate
pdb|3P2U|B Chain B, Crystal Structure Of Phnp In Complex With Orthovanadate
Length = 258
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 49/222 (22%)
Query: 78 SEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYH 137
++G+P C +C C +A + RR S ++++ LIDAG +
Sbjct: 13 AQGVPAWGC------ECAACARARR-SPQYRRQPCSGVVKF----NDAITLIDAG--LHD 59
Query: 138 SALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF---EVMK 194
A RW P + ++TH H D + GL LR W V IP+Y + ++ K
Sbjct: 60 LADRWSPG----SFQQFLLTHYHMDHVQGLFPLR-W--GVGDPIPVYGPPDEQGCDDLFK 112
Query: 195 KTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTV---QDLKITPLPVWHGA---GYRSLGF 248
H L+D S + EPF V Q L++TPLP+ H GY L
Sbjct: 113 --HPGLLDFSHTV---------------EPFVVFDLQGLQVTPLPLNHSKLTFGYL-LET 154
Query: 249 RFGNICYISDVSEIPEETYPFLQDC--EILIMDALRPDRSSS 288
+ ++SD + +PE+T FL++ ++++MD P R+ +
Sbjct: 155 AHSRVAWLSDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADA 196
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGXFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+H D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKL 71
>pdb|2BFK|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFK|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFL|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BFL|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BG2|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG2|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG8|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents
Length = 227
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADCIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|2BFZ|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BFZ|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BG6|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG6|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG8|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents.
pdb|2BGA|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BGA|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized
Length = 227
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADCIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9 C168S
Mutant
Length = 227
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1MQO|A Chain A, Metallo-Beta-Lactamase Bcii Cd Substituted From Bacillus
Cereus At 1.35 Angstroms Resolution
pdb|3I11|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus
pdb|3I13|A Chain A, Bacillus Cereus Zn-dependent Metallo-beta-lactamase At Ph
5.8
Length = 227
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|2BC2|B Chain B, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|3BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Monoclinic Crystal Form
pdb|3I15|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Fully Oxidized
Length = 227
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|1BMC|A Chain A, Structure Of A Zinc Metallo-Beta-Lactamase From Bacillus
Cereus
Length = 221
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|3KNR|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNS|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
Length = 227
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|2NZE|A Chain A, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121.
pdb|2NZE|B Chain B, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121
Length = 222
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 72 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 115
>pdb|2NZF|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group C2
Length = 221
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|3I14|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Partially Oxidized
Length = 216
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 65 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 108
>pdb|2NXA|A Chain A, Structure Of Zn-Dependent Metallo-Beta-Lactamase From
Bacillus Cereus R121h, C221d Double Mutant
pdb|2NYP|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221d Doble Mutant With Two Zinc Ions
Length = 221
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|3FCZ|A Chain A, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
pdb|3FCZ|B Chain B, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
Length = 222
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
R DA IITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 73 RVTDA-IITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 115
>pdb|3I0V|A Chain A, Bacillus Cereus Metallo-beta-lactamase: Apo Form
Length = 212
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 61 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 104
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 140 LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 195
+ WF G + I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 60 VTWFVERGYK-IKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 108
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 140 LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 195
+ WF G + I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 59 VTWFVERGYK-IKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 107
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 122 SGRRNILIDAGKFFYHSALRWFPAYGI--RTIDAVIITHSHADAIGGLDDL 170
+G R +L+D G F R +G + +DAV++TH+ D +G L L
Sbjct: 21 AGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAALDHVGRLPKL 71
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 140 LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 195
+ WF G + I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 60 VTWFVERGYK-IKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 108
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 117 RYPGPSG----RRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDL 170
RYP G +++L D R ++ +D +++TH+H+D IG +D+L
Sbjct: 46 RYPWREGIETSYKHVLTDR-------VFRRLKELSVQKLDFILVTHTHSDHIGNVDEL 96
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 148 IRTIDAVIITHSHADAIGGLDDL 170
++ +D +++TH+H+D IG +D+L
Sbjct: 75 VQKLDFILVTHTHSDHIGNVDEL 97
>pdb|2UYX|A Chain A, Metallo-Beta-Lactamase (1bc2) Single Point Mutant D120s
Length = 228
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 198
+ + VIITH+HA IGG+ L+ +R I + E+ KK Y
Sbjct: 78 KRVTDVIITHAHASRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 121
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 122 SGRRNILIDAGKFF---YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNN 176
+G R ILID G+ Y S L+ I +++TH H D GG+ D+ NN
Sbjct: 39 TGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINN 96
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 121 PSGRRNILIDAGK---FFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDL 170
G + I++D G+ F + L + I V++TH H D IGGL L
Sbjct: 39 KKGNKEIVVDTGQSENFIKNCGLMGID---VGRIKKVVLTHGHYDHIGGLKGL 88
>pdb|1MK4|A Chain A, Structure Of Protein Of Unknown Function Yqjy From
Bacillus Subtilis, Probable Acetyltransferase
pdb|1MK4|B Chain B, Structure Of Protein Of Unknown Function Yqjy From
Bacillus Subtilis, Probable Acetyltransferase
Length = 157
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 71 VFMGTGTSEGIPRVSCLTNPSKKCPVCTKA-----VEPGNKNRRLNTSILIRYPGPSGRR 125
VF+ T G RV C+T+P K + +E G K S+ Y GP R
Sbjct: 92 VFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVN-GISVFANYDGPGQDR 150
Query: 126 NILI 129
+ +
Sbjct: 151 VLFV 154
>pdb|2I14|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|E Chain E, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
pdb|2I14|F Chain F, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Pyrococcus Furiosus
Length = 395
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 92 KKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFF 135
++CPVC VEP K N I++ +P R +++ K F
Sbjct: 348 ERCPVCNAKVEPLLKPIIENGEIVVEFPKAREIREYVLEQAKKF 391
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J
pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX
Length = 562
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 151 IDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGA 210
I A ++TH H D IGGL L + +PIY A +++ ++ G+ PGA
Sbjct: 75 IKAWVLTHGHEDHIGGLPFLLPXIFGKESPVPIYGARLTLGLLRGK----LEEFGLRPGA 130
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 PAYGIRTIDAVIITHSHADAIGGL 167
P + + ++DAVIITH+H D G L
Sbjct: 228 PEFTLDSLDAVIITHAHLDHSGFL 251
>pdb|1TKW|B Chain B, The Transient Complex Of Poplar Plastocyanin With Turnip
Cytochrome F Determined With Paramagnetic Nmr
pdb|1HCZ|A Chain A, Lumen-Side Domain Of Reduced Cytochrome F At-35 Degrees
Celsius
Length = 252
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 205 GIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLG 247
G +PG SE+ F I+ +P T +D+ P++ G G R G
Sbjct: 116 GPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVG-GNRGRG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,870,396
Number of Sequences: 62578
Number of extensions: 419716
Number of successful extensions: 1092
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 40
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)