Query 020812
Match_columns 321
No_of_seqs 357 out of 2487
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 1.7E-38 3.7E-43 284.6 25.1 224 68-315 1-226 (252)
2 PRK05184 pyrroloquinoline quin 100.0 9.4E-36 2E-40 272.7 22.6 230 68-318 1-274 (302)
3 PRK11244 phnP carbon-phosphoru 100.0 1.5E-34 3.2E-39 258.8 22.3 213 68-315 1-224 (250)
4 TIGR02108 PQQ_syn_pqqB coenzym 100.0 3.6E-34 7.8E-39 261.5 21.3 225 69-316 1-273 (302)
5 TIGR02649 true_RNase_BN ribonu 100.0 1E-31 2.2E-36 246.9 20.8 209 70-315 1-272 (303)
6 TIGR02651 RNase_Z ribonuclease 100.0 2.6E-31 5.7E-36 243.8 19.6 206 69-315 1-270 (299)
7 TIGR03307 PhnP phosphonate met 100.0 6E-30 1.3E-34 227.4 20.5 204 79-315 2-214 (238)
8 KOG2121 Predicted metal-depend 100.0 3E-31 6.6E-36 255.4 7.8 219 66-315 441-689 (746)
9 COG1234 ElaC Metal-dependent h 100.0 4.9E-29 1.1E-33 226.8 18.6 218 67-316 1-261 (292)
10 PRK00055 ribonuclease Z; Revie 100.0 4.9E-28 1.1E-32 218.6 14.6 212 68-315 2-236 (270)
11 PRK02126 ribonuclease Z; Provi 99.9 4.6E-25 1E-29 204.1 21.0 195 111-315 16-316 (334)
12 PF12706 Lactamase_B_2: Beta-l 99.9 1.4E-21 3E-26 167.6 17.6 175 125-312 1-194 (194)
13 COG1235 PhnP Metal-dependent h 99.9 1.3E-21 2.9E-26 176.8 15.7 223 66-319 2-242 (269)
14 TIGR02650 RNase_Z_T_toga ribon 99.9 1.1E-21 2.5E-26 174.2 13.7 183 123-317 17-249 (277)
15 PRK00685 metal-dependent hydro 99.9 1.8E-20 3.9E-25 165.3 17.3 169 112-313 9-194 (228)
16 PRK04286 hypothetical protein; 99.8 2.5E-20 5.3E-25 170.6 14.3 214 68-316 1-253 (298)
17 TIGR00649 MG423 conserved hypo 99.8 3.5E-19 7.5E-24 171.0 18.1 189 108-315 11-229 (422)
18 TIGR03675 arCOG00543 arCOG0054 99.8 6.6E-18 1.4E-22 167.9 20.3 177 111-296 188-387 (630)
19 PRK11709 putative L-ascorbate 99.8 6.1E-17 1.3E-21 150.8 21.4 151 147-313 106-284 (355)
20 smart00849 Lactamase_B Metallo 99.7 9.8E-17 2.1E-21 135.5 15.4 142 108-264 3-148 (183)
21 COG1236 YSH1 Predicted exonucl 99.6 3.7E-15 8.1E-20 142.5 16.4 178 110-299 13-204 (427)
22 COG1782 Predicted metal-depend 99.6 4.7E-15 1E-19 138.4 15.5 182 110-301 193-398 (637)
23 COG0595 mRNA degradation ribon 99.6 2.6E-14 5.5E-19 139.1 19.7 188 108-315 19-237 (555)
24 TIGR03413 GSH_gloB hydroxyacyl 99.5 7.9E-14 1.7E-18 124.5 13.0 118 110-261 9-129 (248)
25 PRK11921 metallo-beta-lactamas 99.5 8.4E-14 1.8E-18 132.6 13.5 124 111-259 33-163 (394)
26 KOG1136 Predicted cleavage and 99.5 9.3E-14 2E-18 123.8 12.6 180 66-285 2-209 (501)
27 PLN02469 hydroxyacylglutathion 99.5 2.5E-13 5.4E-18 121.8 12.5 118 111-261 12-138 (258)
28 PLN02398 hydroxyacylglutathion 99.5 5.6E-13 1.2E-17 122.7 12.9 119 111-261 87-209 (329)
29 PF00753 Lactamase_B: Metallo- 99.5 9.1E-14 2E-18 117.3 7.2 142 109-263 4-150 (194)
30 PRK10241 hydroxyacylglutathion 99.5 6.3E-13 1.4E-17 118.9 11.7 116 111-261 12-130 (251)
31 PRK05452 anaerobic nitric oxid 99.4 1.2E-12 2.6E-17 127.2 13.4 126 110-259 34-167 (479)
32 COG0491 GloB Zn-dependent hydr 99.4 1.6E-12 3.5E-17 114.9 13.1 138 111-262 25-171 (252)
33 COG2220 Predicted Zn-dependent 99.4 1.8E-11 4E-16 110.0 18.1 179 112-313 15-213 (258)
34 PF13483 Lactamase_B_3: Beta-l 99.4 7.7E-12 1.7E-16 104.6 13.2 145 111-311 7-163 (163)
35 TIGR00361 ComEC_Rec2 DNA inter 99.4 7.5E-12 1.6E-16 126.5 15.5 175 66-310 438-629 (662)
36 PLN02962 hydroxyacylglutathion 99.4 6.4E-12 1.4E-16 112.0 12.7 120 111-260 23-152 (251)
37 PRK11539 ComEC family competen 99.4 9.4E-12 2E-16 127.4 14.5 148 65-278 498-663 (755)
38 PF02112 PDEase_II: cAMP phosp 99.3 5.1E-11 1.1E-15 109.6 17.1 207 108-316 14-302 (335)
39 COG2333 ComEC Predicted hydrol 99.3 4.3E-11 9.3E-16 108.3 15.5 132 113-264 56-196 (293)
40 COG0426 FpaA Uncharacterized f 99.3 6E-11 1.3E-15 110.0 12.6 125 111-259 36-166 (388)
41 KOG1137 mRNA cleavage and poly 99.3 1.5E-11 3.2E-16 116.1 8.5 172 110-290 26-217 (668)
42 COG1237 Metal-dependent hydrol 99.2 2.5E-11 5.4E-16 105.9 8.9 75 109-191 20-96 (259)
43 KOG0813 Glyoxylase [General fu 99.1 1.5E-09 3.3E-14 95.8 11.2 119 110-260 12-141 (265)
44 COG2248 Predicted hydrolase (m 99.0 9.4E-10 2E-14 95.1 8.3 191 113-312 17-247 (304)
45 COG5212 PDE1 Low-affinity cAMP 98.9 1.5E-08 3.3E-13 88.5 11.0 165 149-315 111-316 (356)
46 KOG1135 mRNA cleavage and poly 98.7 2.5E-07 5.4E-12 90.0 13.3 162 111-282 15-200 (764)
47 KOG0814 Glyoxylase [General fu 98.6 1.8E-07 3.9E-12 76.8 8.1 117 111-259 21-141 (237)
48 KOG1361 Predicted hydrolase in 98.6 3.9E-07 8.4E-12 86.8 10.8 135 125-284 90-234 (481)
49 PF14597 Lactamase_B_5: Metall 98.4 1.5E-06 3.2E-11 72.1 8.4 114 112-260 24-138 (199)
50 KOG3798 Predicted Zn-dependent 98.4 5.4E-06 1.2E-10 72.0 11.9 180 110-311 87-298 (343)
51 PF13691 Lactamase_B_4: tRNase 97.5 0.00023 5E-09 49.2 5.3 49 112-166 13-63 (63)
52 COG2015 Alkyl sulfatase and re 97.2 0.00044 9.6E-09 65.5 5.2 77 112-192 127-206 (655)
53 KOG4736 Uncharacterized conser 96.5 0.0048 1E-07 55.2 5.4 49 113-170 97-145 (302)
54 KOG3592 Microtubule-associated 83.7 0.86 1.9E-05 45.9 2.7 52 112-172 49-103 (934)
55 PF07521 RMMBL: RNA-metabolisi 77.1 3.9 8.6E-05 25.7 3.3 25 288-312 15-40 (43)
56 KOG1137 mRNA cleavage and poly 40.2 1.1E+02 0.0023 30.6 7.0 84 112-200 165-259 (668)
57 KOG1138 Predicted cleavage and 39.4 1E+02 0.0022 30.4 6.7 146 125-280 74-266 (653)
58 PF14572 Pribosyl_synth: Phosp 24.5 42 0.00091 28.5 1.4 48 112-172 85-132 (184)
59 PF14234 DUF4336: Domain of un 21.2 2.8E+02 0.006 25.4 6.0 69 113-190 22-93 (285)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=1.7e-38 Score=284.58 Aligned_cols=224 Identities=38% Similarity=0.637 Sum_probs=184.4
Q ss_pred eEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCC
Q 020812 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYG 147 (321)
Q Consensus 68 ~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~ 147 (321)
|+++|||||++.|+|.++| +|++|.+++ +.+.|.++|++|+. ++..+|||||++...++.+ .+
T Consensus 1 m~~~~lGtg~~~g~P~~~c------~c~~C~~~~---~~~~R~~~s~li~~----~~~~iLiD~G~g~~~~l~~----~~ 63 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGC------TCPVCTSKD---PRDNRLRTSALVET----EGARILIDCGPDFREQMLR----LP 63 (252)
T ss_pred CEEEEEEeCCCCCeecCCC------CCccCCCCC---CCCcceeeEEEEEE----CCeEEEEECCchHHHHHHh----cC
Confidence 7999999999999999999 999999974 56899999999994 7789999999998777655 25
Q ss_pred CCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEE
Q 020812 148 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT 226 (321)
Q Consensus 148 ~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 226 (321)
+.+||+|||||.|.||++|++.+..+.. ..+++||+++...+.+.+...+.+... .+++ ...++++.++ ++.++
T Consensus 64 ~~~id~I~lTH~H~DH~~gl~~l~~~~~--~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~ 138 (252)
T PRK02113 64 FGKIDAVLITHEHYDHVGGLDDLRPFCR--FGEVPIYAEQYVAERLRSRMPYCFVEH-SYPG--VPNIPLREIEPDRPFL 138 (252)
T ss_pred ccccCEEEECCCChhhhCCHHHHHHhcc--CCCceEEECHHHHHHHHhhCCeeeccC-CCCC--CcceeeEEcCCCCCEE
Confidence 6789999999999999999998865421 357899999998888876543322111 1111 1234556665 57899
Q ss_pred ECCEEEEEEEeccCCCceEEEEEEccEEEeCCCCCCCcchhhhcCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCC-
Q 020812 227 VQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRVDKFLAYSGN- 305 (321)
Q Consensus 227 ~~~~~v~~~p~~H~~g~~s~g~~i~~i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~~~~~H~~~~~a~~~~~~~~~- 305 (321)
+++++|+++++.|+.. +++||++++++|+||+.+.++...+.++++|+||+|+++. ....+|+++++++++++++++
T Consensus 139 ~~~~~i~~~~~~H~~~-~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~-~~~~~H~t~~~a~~~~~~~~~k 216 (252)
T PRK02113 139 VNHTEVTPLRVMHGKL-PILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENIKRIGAK 216 (252)
T ss_pred ECCeEEEEEEecCCCc-cEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC-CCCCCcCCHHHHHHHHHHhCCC
Confidence 9999999999999752 6899999999999999987777888899999999999873 456789999999999999997
Q ss_pred eEEEEeccCC
Q 020812 306 QFTLSNMSLT 315 (321)
Q Consensus 306 ~~vltH~~~~ 315 (321)
+++++|++..
T Consensus 217 ~l~l~H~s~~ 226 (252)
T PRK02113 217 ETYLIHMSHH 226 (252)
T ss_pred EEEEEccccc
Confidence 9999999764
No 2
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=9.4e-36 Score=272.72 Aligned_cols=230 Identities=21% Similarity=0.318 Sum_probs=177.2
Q ss_pred eEEEEEcccCCCCcccccccCCCCCCCcccccccCCC-CCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhh--c-
Q 020812 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPG-NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRW--F- 143 (321)
Q Consensus 68 ~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~-~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~--l- 143 (321)
|||+|||||++.|+|.++| +|++|.+++..+ ..+.|.++|++|+. .++..||||||+++..|+.+. +
T Consensus 1 m~lt~LGtg~~~g~P~~~C------~C~~C~~ar~~~~~~~~R~~ss~li~~---~g~~~iLiD~G~g~~~ql~~~~~~~ 71 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNC------NCPNCRGARAGTIRAKPRTQSSIAVSA---DGEDWVLLNASPDIRQQIQATPALQ 71 (302)
T ss_pred CEEEEEEecCCCCCCcCCC------CchhchhhhcCCCcCCcccccEEEEEc---CCCEEEEEECChhHHHHHHhchhcC
Confidence 8999999999999999999 999999998854 35889999999984 233569999999998888774 1
Q ss_pred --ccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC
Q 020812 144 --PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 221 (321)
Q Consensus 144 --~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (321)
.+.++.+||+|||||.|+||+.|++.+.. ..+++||+++.+.+.+.+.+++ +... . ....++++.+.
T Consensus 72 ~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~-----~~~l~Vyg~~~~~~~l~~~~~~-f~~~----~-~~~~~~~~~i~ 140 (302)
T PRK05184 72 PARGLRDTPIAAVVLTDGQIDHTTGLLTLRE-----GQPFPVYATPAVLEDLSTGFPI-FNVL----D-HYGGVQRRPIA 140 (302)
T ss_pred ccccCCcccccEEEEeCCchhhhhChHhhcc-----CCCeEEEeCHHHHHHHHhcCCc-cccc----c-cccceeeEEec
Confidence 12345689999999999999999988743 4579999999998888764332 2111 0 01234555565
Q ss_pred -CceEEEC---CEEEEEEEeccCC-----------CceEEEEEEc------cEEEeCCCCCCCcchhhhcCCCCEEEEcc
Q 020812 222 -EEPFTVQ---DLKITPLPVWHGA-----------GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDA 280 (321)
Q Consensus 222 -~~~~~~~---~~~v~~~p~~H~~-----------g~~s~g~~i~------~i~ysGDt~~~~~~~~~~~~~~dlli~ea 280 (321)
++.++++ +++|+++++.|.. ...++||+|+ +++|++|+...+++++++++++|+||+|+
T Consensus 141 ~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da 220 (302)
T PRK05184 141 LDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDG 220 (302)
T ss_pred CCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeC
Confidence 5678886 8999999998742 1259999993 79999888666788999999999999999
Q ss_pred cCCCC-------------CCCCCCCHH---HHHHHHHHhCC-eEEEEeccCCCCc
Q 020812 281 LRPDR-------------SSSTHFGLP---RVDKFLAYSGN-QFTLSNMSLTIFP 318 (321)
Q Consensus 281 ~~~~~-------------~~~~H~~~~---~a~~~~~~~~~-~~vltH~~~~~~p 318 (321)
++... ...+|++.+ ++++.+++.++ +++|||++.+ .|
T Consensus 221 ~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~-~~ 274 (302)
T PRK05184 221 TLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNT-NP 274 (302)
T ss_pred CCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCC-Ch
Confidence 84221 135788855 56777777776 9999999865 44
No 3
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=258.80 Aligned_cols=213 Identities=28% Similarity=0.505 Sum_probs=167.2
Q ss_pred eEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCC
Q 020812 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYG 147 (321)
Q Consensus 68 ~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~ 147 (321)
|||++||||++.|+|.++| +|+.|..+++ .+.+.|..+|++|+. ++..||||||.+. +.+ ...
T Consensus 1 m~~~~lGs~~~~~~p~~~c------~c~~c~~~~~-~p~~~r~~~s~li~~----~~~~iLiD~G~~~---~~~---~~~ 63 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGC------ECAACARARR-DPAYRRRPCSALIEF----NGARTLIDAGLPD---LAE---RFP 63 (250)
T ss_pred CEEEEEeccCCCCccCCCc------cchhhhhhhc-CCCCCcceeEEEEEE----CCCEEEEECCChH---Hhh---cCC
Confidence 8999999999999999999 9999999987 335688999999994 7789999999653 222 234
Q ss_pred CCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceee-EEe-CCceE
Q 020812 148 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NII-DEEPF 225 (321)
Q Consensus 148 ~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 225 (321)
+.+||+|||||.|.||++|+..+... ..++++||+++.... +...... ++ ..++ ..+ +++.+
T Consensus 64 ~~~i~~i~iTH~H~DHi~gl~~l~~~---~~~~i~i~~~~~~~~-~~~~~~~--------~~----~~~~~~~l~~~~~~ 127 (250)
T PRK11244 64 PGSLQQILLTHYHMDHVQGLFPLRWG---VGDPIPVYGPPDPEG-CDDLFKH--------PG----ILDFSHPLEPFEPF 127 (250)
T ss_pred cccCCEEEEccCchhhhccHHHHHhh---cCCceeEEeCCchhh-HHHHhcC--------cc----ccccccccCCCCCe
Confidence 57899999999999999999776431 135789999986532 2221110 00 0111 122 35788
Q ss_pred EECCEEEEEEEeccCCCceEEEEEEc----cEEEeCCCCCCCcchhhhc--CCCCEEEEcccCCCC--CCCCCCCHHHHH
Q 020812 226 TVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRVD 297 (321)
Q Consensus 226 ~~~~~~v~~~p~~H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~--~~~dlli~ea~~~~~--~~~~H~~~~~a~ 297 (321)
++++++|+++++.|+. .++||+++ +++|+|||.+.++.+.+.+ .++|++++|+++.+. ...+|++.++++
T Consensus 128 ~~~~~~I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~ 205 (250)
T PRK11244 128 DLGGLQVTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTAL 205 (250)
T ss_pred eECCEEEEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHH
Confidence 9999999999999987 68999996 8999999988766666654 579999999998754 257899999999
Q ss_pred HHHHHhCC-eEEEEeccCC
Q 020812 298 KFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 298 ~~~~~~~~-~~vltH~~~~ 315 (321)
++++++++ +++++|+++.
T Consensus 206 ~~a~~~~~k~lvltH~~~~ 224 (250)
T PRK11244 206 AIIEVLRPPRVILTHISHQ 224 (250)
T ss_pred HHHHhcCCceEEEEcccCC
Confidence 99999997 9999999764
No 4
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=3.6e-34 Score=261.46 Aligned_cols=225 Identities=21% Similarity=0.340 Sum_probs=172.6
Q ss_pred EEEEEcccCCCCcccccccCCCCCCCcccccccCC-CCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcc---
Q 020812 69 EIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEP-GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP--- 144 (321)
Q Consensus 69 ~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~-~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~--- 144 (321)
+|+|||||++.|+|+++| .|++|.+++.. +..+.|.++|++|+. +++.+||||||++.+.++++. .
T Consensus 1 ~~~~LGtg~s~G~P~~~C------~C~~C~~a~~~~~~~~~R~rss~ll~~---~g~~~iLID~Gpd~r~ql~~~-~~~~ 70 (302)
T TIGR02108 1 HIVVLGSAAGGGFPQWNC------NCPNCRGARAGTIGAKARTQSSIAVSA---DGERWVLLNASPDIRQQIQAT-PALH 70 (302)
T ss_pred CEEEEEecCCCCCCcCCC------CChhhHHHhcCCCCCccccccEEEEEe---CCCEEEEEECCHHHHHHHHhC-cccc
Confidence 589999999999999999 99999999763 345689999999974 456789999999998888763 2
Q ss_pred ---cCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC
Q 020812 145 ---AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 221 (321)
Q Consensus 145 ---~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (321)
+..+.+|++|||||.|.||+.||..+++ ..+++||+++.+++.+.+ ++ .+... . ...++++.++
T Consensus 71 ~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~-----~~~lpVya~~~t~~~L~~-~~-~~~~~---~---~~~~~~~~i~ 137 (302)
T TIGR02108 71 PQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE-----GQPFTLYATEMVLQDLSD-NP-IFNVL---D---HWNVRRQPIA 137 (302)
T ss_pred cccCCCcccCCEEEEeCCCcchhhCHHHHcC-----CCCceEEECHHHHHHHHh-CC-Ccccc---c---hhhccceEec
Confidence 2446899999999999999999998853 357999999999999875 32 22110 0 0112233333
Q ss_pred -CceEEE-----CCEEEEEEEeccC------C--C----ceEEEEEEc------cEEEeCCCCCCCcchhhhcCCCCEEE
Q 020812 222 -EEPFTV-----QDLKITPLPVWHG------A--G----YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILI 277 (321)
Q Consensus 222 -~~~~~~-----~~~~v~~~p~~H~------~--g----~~s~g~~i~------~i~ysGDt~~~~~~~~~~~~~~dlli 277 (321)
++.+.+ ++++|+++++.|+ . + ..++||+|+ +++|++|++..+++++++++++|+||
T Consensus 138 ~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~li 217 (302)
T TIGR02108 138 LNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVF 217 (302)
T ss_pred CCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEE
Confidence 345554 3599999999943 1 1 268999996 39999999988899999999999999
Q ss_pred EcccC-CC----------C--CCCCCCCHH---HHHHHHHHhCC-eEEEEeccCCC
Q 020812 278 MDALR-PD----------R--SSSTHFGLP---RVDKFLAYSGN-QFTLSNMSLTI 316 (321)
Q Consensus 278 ~ea~~-~~----------~--~~~~H~~~~---~a~~~~~~~~~-~~vltH~~~~~ 316 (321)
+|+++ .+ + ...+|++.+ ++++.+.+.++ +++|+|++.+.
T Consensus 218 ida~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~ 273 (302)
T TIGR02108 218 FDGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTN 273 (302)
T ss_pred EeCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCC
Confidence 99984 33 1 235677776 66666666766 99999998864
No 5
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=1e-31 Score=246.90 Aligned_cols=209 Identities=20% Similarity=0.275 Sum_probs=161.2
Q ss_pred EEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCC
Q 020812 70 IVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIR 149 (321)
Q Consensus 70 i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~ 149 (321)
|+|||||++ +|. ..|+.+|++|+..++.++..+|||||+++..++.+. +.++.
T Consensus 1 ~~~LGt~~~--~p~-----------------------~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~--~i~~~ 53 (303)
T TIGR02649 1 LIFLGTSAG--VPT-----------------------RTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT--AFNPG 53 (303)
T ss_pred CEEEecCCC--CCC-----------------------CCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHh--CCCHH
Confidence 589999976 554 468899999995211124789999999988777663 45668
Q ss_pred CccEEEecCCchhhhcChHHHHHh--hccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEE
Q 020812 150 TIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT 226 (321)
Q Consensus 150 ~Id~V~iTH~H~DH~~Gl~~l~~~--~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 226 (321)
+|++|||||.|+||++|++.+... ......+++||+|+.+.+.+........ . .. ...+++..+. ++.+.
T Consensus 54 ~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~-~---~~---~~~~~~~~i~~~~~~~ 126 (303)
T TIGR02649 54 KLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISG-S---WT---DYPLEIVEIGAGEILD 126 (303)
T ss_pred HCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhcc-c---cc---CCceEEEEcCCCceEe
Confidence 999999999999999999987642 2223456899999998877765432110 0 00 0123445554 45677
Q ss_pred ECCEEEEEEEeccCCCceEEEEEEc------------------------------------------------------c
Q 020812 227 VQDLKITPLPVWHGAGYRSLGFRFG------------------------------------------------------N 252 (321)
Q Consensus 227 ~~~~~v~~~p~~H~~g~~s~g~~i~------------------------------------------------------~ 252 (321)
.++++|+++++.|.. +++||+++ +
T Consensus 127 ~~~~~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~ 204 (303)
T TIGR02649 127 DGLRKVTAYPLEHPL--ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKA 204 (303)
T ss_pred cCCeEEEEEEccCcc--ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcE
Confidence 788999999999986 79999984 4
Q ss_pred EEEeCCCCCCCcchhhhcCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCC-eEEEEeccCC
Q 020812 253 ICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRVDKFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 253 i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~-----~~~~H~~~~~a~~~~~~~~~-~~vltH~~~~ 315 (321)
++|+|||.++ +++++.++++|+||+|+++.+. ..++|++.+||.++++++++ +++|+||++.
T Consensus 205 i~y~gDt~~~-~~~~~~~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~ 272 (303)
T TIGR02649 205 LAIFGDTGPC-DAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSR 272 (303)
T ss_pred EEEecCCCCh-HHHHHHhcCCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccc
Confidence 8999999986 6788999999999999999653 24789999999999999997 9999999874
No 6
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.98 E-value=2.6e-31 Score=243.81 Aligned_cols=206 Identities=25% Similarity=0.342 Sum_probs=161.6
Q ss_pred EEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCC
Q 020812 69 EIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGI 148 (321)
Q Consensus 69 ~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~ 148 (321)
||+|||||++ .|. ..|+++|++|+. ++..+|||||++...++.+. +..+
T Consensus 1 ~~~~lGtg~~--~p~-----------------------~~r~~~~~~v~~----~~~~iLiD~G~g~~~~l~~~--~~~~ 49 (299)
T TIGR02651 1 EITFLGTGGG--VPT-----------------------KERNLPSIALKL----NGELWLFDCGEGTQRQMLRS--GISP 49 (299)
T ss_pred CEEEEeCCCC--CCC-----------------------CCCCCceEEEEE----CCeEEEEECCHHHHHHHHHc--CCCH
Confidence 6899999986 453 357889999995 67899999999987777663 3456
Q ss_pred CCccEEEecCCchhhhcChHHHHHhh--ccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-Cc-e
Q 020812 149 RTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE-P 224 (321)
Q Consensus 149 ~~Id~V~iTH~H~DH~~Gl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 224 (321)
.+|++|||||.|+||++|++.+.... .....+++||+|+...+.++....+.... ....+++..+. ++ .
T Consensus 50 ~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 122 (299)
T TIGR02651 50 MKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTY-------LNYPIKIHEIEEGGLV 122 (299)
T ss_pred HHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcccC-------CCceEEEEEccCCCce
Confidence 78999999999999999999887532 22234688999999887776543221100 01123445555 34 5
Q ss_pred EEECCEEEEEEEeccCCCceEEEEEEc-----------------------------------------------------
Q 020812 225 FTVQDLKITPLPVWHGAGYRSLGFRFG----------------------------------------------------- 251 (321)
Q Consensus 225 ~~~~~~~v~~~p~~H~~g~~s~g~~i~----------------------------------------------------- 251 (321)
+..++++|+++++.|.. +++||+++
T Consensus 123 ~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g 200 (299)
T TIGR02651 123 FEDDGFKVEAFPLDHSI--PSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKG 200 (299)
T ss_pred EecCCEEEEEEEcCCCC--ceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCC
Confidence 88899999999999976 78999974
Q ss_pred -cEEEeCCCCCCCcchhhhcCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCC-eEEEEeccCC
Q 020812 252 -NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRVDKFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 252 -~i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~-----~~~~H~~~~~a~~~~~~~~~-~~vltH~~~~ 315 (321)
+++|+|||.++ +++.+.++++|+||+||++.+. ...+|++++|++++++++++ +++|+||++.
T Consensus 201 ~~i~y~gDt~~~-~~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~ 270 (299)
T TIGR02651 201 RKIAYTGDTRPC-EEVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPR 270 (299)
T ss_pred cEEEEecCCCCh-HHHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 59999999987 5688899999999999998764 24789999999999999997 9999999874
No 7
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.97 E-value=6e-30 Score=227.36 Aligned_cols=204 Identities=27% Similarity=0.467 Sum_probs=156.2
Q ss_pred CCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecC
Q 020812 79 EGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITH 158 (321)
Q Consensus 79 ~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH 158 (321)
.|+|+++| +|++|..++.. +.++|..+|++|+. ++..+|||||.+. +.+ .....+|++|||||
T Consensus 2 ~~~p~~~c------~c~~c~~a~~~-~~~~r~~~s~~i~~----~~~~iliD~G~~~---~~~---~~~~~~id~i~iTH 64 (238)
T TIGR03307 2 QQVPVYGC------DCVACQRARRN-PDYRRQPCSAVIEF----NGARTLIDAGLTD---LAE---RFPPGSLQAILLTH 64 (238)
T ss_pred CCCCcCCc------cchhhHhhhhC-ccccCcceEEEEEE----CCcEEEEECCChh---Hhh---ccCccCCCEEEEec
Confidence 57999999 99999999875 56789999999994 6789999999653 222 23457899999999
Q ss_pred CchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEEEEec
Q 020812 159 SHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW 238 (321)
Q Consensus 159 ~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~ 238 (321)
.|.||++|+..+... ..++++||+++.+... ..... . ++. ..+......++.+++++++|+++|+.
T Consensus 65 ~H~DHi~gl~~l~~~---~~~~~~v~~~~~~~~~-~~~~~----~----~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (238)
T TIGR03307 65 YHMDHVQGLFPLRWG---VGEPIPVYGPPDEEGC-DDLFK----H----PGI--LDFSKPLEAFEPFDLGGLRVTPLPLV 130 (238)
T ss_pred CchhhhcchHHHHHh---cCCceeEEeCchHhhH-HHHhc----C----ccc--ccccccccCCceEEECCEEEEEEecC
Confidence 999999999776432 1346899999876432 21111 0 010 00111122356888999999999999
Q ss_pred cCCCceEEEEEEc----cEEEeCCCCCCCcchhhhcC--CCCEEEEcccCCCC--CCCCCCCHHHHHHHHHHhCC-eEEE
Q 020812 239 HGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR--SSSTHFGLPRVDKFLAYSGN-QFTL 309 (321)
Q Consensus 239 H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~--~~dlli~ea~~~~~--~~~~H~~~~~a~~~~~~~~~-~~vl 309 (321)
|.. .++||+|+ +++|+||+.+.++.+.+.++ ++|+||+|+++.+. ....|+++++++++++++++ ++++
T Consensus 131 H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil 208 (238)
T TIGR03307 131 HSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVIL 208 (238)
T ss_pred CCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEE
Confidence 986 58999996 89999999887776777665 79999999998543 24689999999999999998 9999
Q ss_pred EeccCC
Q 020812 310 SNMSLT 315 (321)
Q Consensus 310 tH~~~~ 315 (321)
+|++..
T Consensus 209 ~H~~~~ 214 (238)
T TIGR03307 209 THISHQ 214 (238)
T ss_pred Eecccc
Confidence 999764
No 8
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.97 E-value=3e-31 Score=255.42 Aligned_cols=219 Identities=23% Similarity=0.288 Sum_probs=165.3
Q ss_pred CceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhccc
Q 020812 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA 145 (321)
Q Consensus 66 ~~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~ 145 (321)
++++|+|||||++ +|. ++|+.++++|+. ..+.+||+|||+|+..|+.|.+..
T Consensus 441 ~~~eIi~LGTGSa--iPs-----------------------kyRNVSS~lv~i---~~~~~IlLDCGEgTlgql~R~YG~ 492 (746)
T KOG2121|consen 441 KDPEIIFLGTGSA--IPS-----------------------KYRNVSSILVRI---DSDDSILLDCGEGTLGQLVRHYGV 492 (746)
T ss_pred CCcEEEEecCCcc--CCC-----------------------cccceEEEEEec---cCCccEEeecCCchHHHHHHHhhh
Confidence 6899999999988 775 589999999996 355679999999999999887652
Q ss_pred CC----CCCccEEEecCCchhhhcChHHHHHhh---cc--ccccccEEechhhHHHHHhhccc-ccccc--C-CC-CCCC
Q 020812 146 YG----IRTIDAVIITHSHADAIGGLDDLRDWT---NN--VQRHIPIYVAMRDFEVMKKTHYY-LVDTS--G-II-PGAA 211 (321)
Q Consensus 146 ~~----~~~Id~V~iTH~H~DH~~Gl~~l~~~~---~~--~~~~~~v~~~~~~~~~l~~~~~~-~~~~~--~-~~-~~~~ 211 (321)
.+ ++++++|+|||.|+||+.|+..+++.. .. ...++-|.+|+....|++.+... -+... . .. ++..
T Consensus 493 ~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~l 572 (746)
T KOG2121|consen 493 ENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGAL 572 (746)
T ss_pred cchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhh
Confidence 22 488999999999999999998887642 11 23355677788888888875410 00000 0 00 1111
Q ss_pred ccceee-E----EeCCceEEECCEEEEEEEeccCCCceEEEEEEc-----cEEEeCCCCCCCcchhhhcCCCCEEEEccc
Q 020812 212 VSELQF-N----IIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDAL 281 (321)
Q Consensus 212 ~~~~~~-~----~~~~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~-----~i~ysGDt~~~~~~~~~~~~~~dlli~ea~ 281 (321)
...... - .+....-+.+...|..+|+.|++ .++|..+. +++|+|||+++ +.+.+..+++|+||||||
T Consensus 573 f~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~-~~~v~~g~datlLIHEAT 649 (746)
T KOG2121|consen 573 FAQKSPDSVPERLLSYLLRELGLESIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPC-EDLVKAGKDATLLIHEAT 649 (746)
T ss_pred hhccCccccchhhhhHHHHhcCceeEEecCcEecC--hhhceeEecccceEEEEcCCCCCc-hhHhhhccCCceEEeehh
Confidence 110000 0 01111224567899999999999 78998885 99999999997 669999999999999999
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHhCC-eEEEEeccCC
Q 020812 282 RPDR-----SSSTHFGLPRVDKFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 282 ~~~~-----~~~~H~~~~~a~~~~~~~~~-~~vltH~~~~ 315 (321)
+.|. ..++|+|..||+++++++++ +++||||||.
T Consensus 650 ~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQR 689 (746)
T KOG2121|consen 650 LEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQR 689 (746)
T ss_pred hchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcc
Confidence 9885 36999999999999999998 9999999985
No 9
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.96 E-value=4.9e-29 Score=226.82 Aligned_cols=218 Identities=25% Similarity=0.292 Sum_probs=150.4
Q ss_pred ceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccC
Q 020812 67 QSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY 146 (321)
Q Consensus 67 ~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~ 146 (321)
.|+|+|||||++ +|. ..|+.++++|+. ++..+|||||+|+..++.+. +.
T Consensus 1 ~m~i~fLGtg~~--~Pt-----------------------~~r~~~s~ll~~----~~~~~L~DcGeGt~~~l~~~--~~ 49 (292)
T COG1234 1 MMEITFLGTGGA--VPT-----------------------KDRNVSSILLRL----EGEKFLFDCGEGTQHQLLRA--GL 49 (292)
T ss_pred CcEEEEEecCCC--CCc-----------------------CccccceeEEEe----CCeeEEEECCHhHHHHHHHh--cC
Confidence 489999999976 665 468899999994 77899999999998888773 56
Q ss_pred CCCCccEEEecCCchhhhcChHHHHHh--hccccccccEEechhhHHHHHhhccc---cccccCCCCCCCccceeeEE--
Q 020812 147 GIRTIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYY---LVDTSGIIPGAAVSELQFNI-- 219 (321)
Q Consensus 147 ~~~~Id~V~iTH~H~DH~~Gl~~l~~~--~~~~~~~~~v~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~-- 219 (321)
.+.+|++|||||.|.||+.||+.+... ......++.||+|+...+.+...... ...............+.+..
T Consensus 50 ~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~ 129 (292)
T COG1234 50 PPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALE 129 (292)
T ss_pred ChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEe
Confidence 667999999999999999999987654 23334468999998877665542110 00000000000000001100
Q ss_pred eC------C----ceEEEC------------CEEEEEEEeccCCC--ceEEEEEEc------cEEEeCCCCCCCcchhhh
Q 020812 220 ID------E----EPFTVQ------------DLKITPLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYPF 269 (321)
Q Consensus 220 ~~------~----~~~~~~------------~~~v~~~p~~H~~g--~~s~g~~i~------~i~ysGDt~~~~~~~~~~ 269 (321)
++ + +....+ +..++.++..|+.- ..+.++++. +|+|+|||.++ +++.+.
T Consensus 130 ~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~-~~~~~~ 208 (292)
T COG1234 130 LDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPC-DELIDL 208 (292)
T ss_pred cCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCC-HHHHHH
Confidence 00 0 011111 56667777778731 022333332 89999999998 668999
Q ss_pred cCCCCEEEEcccCCCCC-----CCCCCCHHHHHHHHHHhCC-eEEEEeccCCC
Q 020812 270 LQDCEILIMDALRPDRS-----SSTHFGLPRVDKFLAYSGN-QFTLSNMSLTI 316 (321)
Q Consensus 270 ~~~~dlli~ea~~~~~~-----~~~H~~~~~a~~~~~~~~~-~~vltH~~~~~ 316 (321)
++++|+||||+++.+.. ..+|++.+||.++++++++ +++|||+++.-
T Consensus 209 a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry 261 (292)
T COG1234 209 AKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRY 261 (292)
T ss_pred hcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccc
Confidence 99999999999997642 2349999999999999997 99999998754
No 10
>PRK00055 ribonuclease Z; Reviewed
Probab=99.95 E-value=4.9e-28 Score=218.59 Aligned_cols=212 Identities=22% Similarity=0.261 Sum_probs=143.8
Q ss_pred eEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCC
Q 020812 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYG 147 (321)
Q Consensus 68 ~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~ 147 (321)
|||+|||||++ .|. +.|+++|++|+. ++..+|||||.+...++.+. +.+
T Consensus 2 m~i~~LGsg~~--~~~-----------------------~~r~~~~~li~~----~~~~iLiD~G~g~~~~l~~~--~~~ 50 (270)
T PRK00055 2 MELTFLGTGSG--VPT-----------------------PTRNVSSILLRL----GGELFLFDCGEGTQRQLLKT--GIK 50 (270)
T ss_pred eEEEEEecCCC--CCc-----------------------CCCCCCEEEEEE----CCcEEEEECCHHHHHHHHHc--CCC
Confidence 89999999986 443 357789999994 67899999999987776653 456
Q ss_pred CCCccEEEecCCchhhhcChHHHHHhh--ccccccccEEechhhHHHHHhhcc------ccccccCCCCCCCccceee--
Q 020812 148 IRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHY------YLVDTSGIIPGAAVSELQF-- 217 (321)
Q Consensus 148 ~~~Id~V~iTH~H~DH~~Gl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~-- 217 (321)
+.+|++|||||.|+||++|++.+.... .....+++||+|+...+.+..... +.+.... ... ..+....
T Consensus 51 ~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 128 (270)
T PRK00055 51 PRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKD-KPG-KLDAEKLKA 128 (270)
T ss_pred HHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcC-CCC-CCCHHHHHH
Confidence 688999999999999999999887532 223457889999888776654211 1110000 000 0000000
Q ss_pred EEeC-CceE-EE-CCEEEEEEEeccCCCceEEEEEEc----cEEEeCCCCCCCcchhhhcCCCCEEEEcccCCCCC----
Q 020812 218 NIID-EEPF-TV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS---- 286 (321)
Q Consensus 218 ~~~~-~~~~-~~-~~~~v~~~p~~H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~~---- 286 (321)
..+. +..+ ++ .+.++.. ..|..-.++++|+++ +++|+|||.++ +++.+.++++|+||+||++.+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~-~~~~~~~~~~d~li~E~~~~~~~~~~~ 205 (270)
T PRK00055 129 LGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPRKGRKVAYCGDTRPC-EALVELAKGADLLVHEATFGDEDEELA 205 (270)
T ss_pred CCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCCCCcEEEEeCCCCCc-HHHHHHhCCCCEEEEeccCCcchhhHH
Confidence 0000 0000 00 1122221 112210135788885 89999999987 56888899999999999987642
Q ss_pred -CCCCCCHHHHHHHHHHhCC-eEEEEeccCC
Q 020812 287 -SSTHFGLPRVDKFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 287 -~~~H~~~~~a~~~~~~~~~-~~vltH~~~~ 315 (321)
..+|+++++++++++++++ +++++|++..
T Consensus 206 ~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~ 236 (270)
T PRK00055 206 KEYGHSTARQAAEIAKEAGVKRLILTHFSPR 236 (270)
T ss_pred hhcCCCCHHHHHHHHHHcCCCEEEEEeeccc
Confidence 4789999999999999997 9999999875
No 11
>PRK02126 ribonuclease Z; Provisional
Probab=99.94 E-value=4.6e-25 Score=204.10 Aligned_cols=195 Identities=17% Similarity=0.264 Sum_probs=143.6
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
.+|++|... .++..+|||||. ..++.+ .++.+|++||+||.|+||++|++.|+.....+.++++||+++.+.
T Consensus 16 dn~~~l~~~--~~~~~iLiD~G~--~~~l~~----~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~ 87 (334)
T PRK02126 16 DPGLYVDFL--FERRALLFDLGD--LHHLPP----RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFA 87 (334)
T ss_pred CcEEEEEEC--CCCeEEEEcCCC--HHHHhh----cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHH
Confidence 357777742 357889999999 344433 467799999999999999999999987654445678999999999
Q ss_pred HHHHhhcc-cccccc-CCCCCCCcccee----------e-------------EEe-CCceEEECCEEEEEEEeccCCCce
Q 020812 191 EVMKKTHY-YLVDTS-GIIPGAAVSELQ----------F-------------NII-DEEPFTVQDLKITPLPVWHGAGYR 244 (321)
Q Consensus 191 ~~l~~~~~-~~~~~~-~~~~~~~~~~~~----------~-------------~~~-~~~~~~~~~~~v~~~p~~H~~g~~ 244 (321)
+.++..+. +.+... ...+........ + ... ++..++.++++|+++++.|+. +
T Consensus 88 ~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p 165 (334)
T PRK02126 88 DQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI--P 165 (334)
T ss_pred HHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC--c
Confidence 98887654 211100 000000000000 0 000 123466789999999999987 7
Q ss_pred EEEEEEc-----------------------------------------------------------------------cE
Q 020812 245 SLGFRFG-----------------------------------------------------------------------NI 253 (321)
Q Consensus 245 s~g~~i~-----------------------------------------------------------------------~i 253 (321)
++||+|+ ++
T Consensus 166 ~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v 245 (334)
T PRK02126 166 CLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKI 245 (334)
T ss_pred eeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEE
Confidence 8999884 49
Q ss_pred EEeCCCCCCCc---chhhhcCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCC-eEEEEeccCC
Q 020812 254 CYISDVSEIPE---ETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRVDKFLAYSGN-QFTLSNMSLT 315 (321)
Q Consensus 254 ~ysGDt~~~~~---~~~~~~~~~dlli~ea~~~~~-----~~~~H~~~~~a~~~~~~~~~-~~vltH~~~~ 315 (321)
+|+|||.++++ .+.++++++|+||+|+++.+. ...+|++++++.++++++++ +++|+|++..
T Consensus 246 ~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~ 316 (334)
T PRK02126 246 GYVTDIGYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPR 316 (334)
T ss_pred EEECCCCCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcc
Confidence 99999999874 477888999999999999763 24789999999999999997 9999999875
No 12
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.88 E-value=1.4e-21 Score=167.61 Aligned_cols=175 Identities=27% Similarity=0.358 Sum_probs=124.9
Q ss_pred ceEEEecCCCchHHH--H-hhccc-CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhh-ccc
Q 020812 125 RNILIDAGKFFYHSA--L-RWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYY 199 (321)
Q Consensus 125 ~~iLID~G~~~~~~l--~-~~l~~-~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~ 199 (321)
.+||||||.+.. ++ . +.... ..+.+|++|||||.|.||+.|++.+........ . +||+++.+.+.+.+. ...
T Consensus 1 ~~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~-~-~i~~~~~~~~~l~~~~~~~ 77 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHP-K-PIYGPPETKEFLREYKFGI 77 (194)
T ss_dssp SEEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCT-T-EEEECHHHHHHHHHHHHTH
T ss_pred CEEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhccc-c-eEEecHHHHHHHHhhhccc
Confidence 379999999865 32 1 11111 122489999999999999999988876532211 2 899999999988742 111
Q ss_pred cccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCCceEE--EEEEc----cEEEeCCCCCCCcchhhhcCC
Q 020812 200 LVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSL--GFRFG----NICYISDVSEIPEETYPFLQD 272 (321)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~--g~~i~----~i~ysGDt~~~~~~~~~~~~~ 272 (321)
. .. + ......++..+. ++.+++++++|+++|+.|..+..+. ||+++ +++|+||+.+ + ++.+++
T Consensus 78 ~-~~---~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--~--~~~~~~ 147 (194)
T PF12706_consen 78 L-DL---Y--PEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--D--FEELKN 147 (194)
T ss_dssp H-TT---C--CTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS--C--HHHHTT
T ss_pred c-cc---c--ccccceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEecCCcceEEeeccch--h--hhhhcc
Confidence 0 00 0 011223445554 5689999999999999999853220 28886 9999999988 2 355589
Q ss_pred CCEEEEcccCCC------CCCCCCCCHHHHHHHHHHhCC-eEEEEec
Q 020812 273 CEILIMDALRPD------RSSSTHFGLPRVDKFLAYSGN-QFTLSNM 312 (321)
Q Consensus 273 ~dlli~ea~~~~------~~~~~H~~~~~a~~~~~~~~~-~~vltH~ 312 (321)
+|++++|+++.. .....|++.+++.++++++++ +++++|+
T Consensus 148 ~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 148 IDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp BSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred CCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999873 345899999999999999998 8999996
No 13
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=176.77 Aligned_cols=223 Identities=24% Similarity=0.413 Sum_probs=139.8
Q ss_pred CceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHhhccc
Q 020812 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA 145 (321)
Q Consensus 66 ~~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~ 145 (321)
..|++++||+|++.|+|.++| .|..|.. .|......+. .++++||+|.+.+.+..+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~------~~~~c~~--------~~~~v~~~~~------~~~~lid~g~~~~~~~~~---- 57 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGC------DCRACGG--------NRLRVDCGVG------VKTLLIDAGPDLRDQGLR---- 57 (269)
T ss_pred CceEEEEEEEcCCCCceecCC------CccccCC--------ceEEEEEEec------ceeEEEecChhHHhhhhc----
Confidence 468999999999999999999 8888881 2223333343 238999999998766554
Q ss_pred CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHH-----HHhhccccccccCCCCCCC--ccceeeE
Q 020812 146 YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV-----MKKTHYYLVDTSGIIPGAA--VSELQFN 218 (321)
Q Consensus 146 ~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~--~~~~~~~ 218 (321)
.++.++|+||+||.|+||+.|++.|++++. .+++........ +.+.+.+.+... ..+... ....++.
T Consensus 58 ~~~~~idai~~TH~H~DHi~Gl~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 131 (269)
T COG1235 58 LGVSDLDAILLTHEHSDHIQGLDDLRRAYT-----LPIYVNPGTLRASTSDRLLGGFPYLFRHP-FPPFSLPAIGGLEVT 131 (269)
T ss_pred ccccccCeEEEecccHHhhcChHHHHHHhc-----CCcccccceecccchhhhhccchhhhcCC-CCccccccccceeee
Confidence 334689999999999999999999998653 233333222211 222222211111 000000 0111111
Q ss_pred Ee--CCceEEECCEEEEEEEeccCCCceEEEEEE----ccEEEeCCCCCCCcchhhh---cCCCCEEEEcccCCCC-CCC
Q 020812 219 II--DEEPFTVQDLKITPLPVWHGAGYRSLGFRF----GNICYISDVSEIPEETYPF---LQDCEILIMDALRPDR-SSS 288 (321)
Q Consensus 219 ~~--~~~~~~~~~~~v~~~p~~H~~g~~s~g~~i----~~i~ysGDt~~~~~~~~~~---~~~~dlli~ea~~~~~-~~~ 288 (321)
.. ..+.++..+..+...+..+..+ ...||.+ +.++|.+|+...++..... ....++.+.+.++++. ...
T Consensus 132 ~~~~~hd~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 132 PFPVPHDAIEPVGFVIIRTGRKLHGG-TDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred cCCCCCccccCCCcccccCccccccc-ccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 11 1233333332222222222221 3455554 3888999998877655433 3457777888877654 458
Q ss_pred CCCCHHHHHHHHHHhCC-eEEEEeccCCCCcc
Q 020812 289 THFGLPRVDKFLAYSGN-QFTLSNMSLTIFPF 319 (321)
Q Consensus 289 ~H~~~~~a~~~~~~~~~-~~vltH~~~~~~p~ 319 (321)
+|.+.+++.+++++.++ |++|+|++.++-++
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~ 242 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKNDDE 242 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCCCHH
Confidence 89999999999999998 79999999988765
No 14
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.87 E-value=1.1e-21 Score=174.21 Aligned_cols=183 Identities=12% Similarity=0.074 Sum_probs=130.4
Q ss_pred CCceEEEe-cCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHH---hhccccccccEEechhhHHHHHhhcc
Q 020812 123 GRRNILID-AGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD---WTNNVQRHIPIYVAMRDFEVMKKTHY 198 (321)
Q Consensus 123 ~~~~iLID-~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~---~~~~~~~~~~v~~~~~~~~~l~~~~~ 198 (321)
....||+| +|.|....+.+. +..+++|||||.|.||++|+..+.. +...+.++..||+|+...+.+++...
T Consensus 17 ~~~~ilfD~ag~g~~~~l~~k-----~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~ 91 (277)
T TIGR02650 17 SPEEIIFDAAEEGSSTLGGKK-----VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSE 91 (277)
T ss_pred CchhheehhhcccchhHHhhh-----HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHH
Confidence 34789999 999976655442 4578999999999999999976543 23234556789999987776663322
Q ss_pred ccccccCCCCCCCccceeeEEeCC-ceEEEC----CEEEEEEEeccC-CCceEEEEEEc---------------------
Q 020812 199 YLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ----DLKITPLPVWHG-AGYRSLGFRFG--------------------- 251 (321)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~v~~~p~~H~-~g~~s~g~~i~--------------------- 251 (321)
.+...... .....++..+++ +.+... .+.|++++..|+ .+.+|+||.+.
T Consensus 92 ~~~~~~~~----~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l 167 (277)
T TIGR02650 92 FIKAANED----LFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLL 167 (277)
T ss_pred HHHHhhhh----hccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHH
Confidence 11111000 011123333443 333333 389999999998 34468999872
Q ss_pred ---------------cEEEeCCCCCCCcchhhhcCCCCEEEEcccCCCCC---CCCCCCHHHHHHHHHHhCC-eEEEEec
Q 020812 252 ---------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS---SSTHFGLPRVDKFLAYSGN-QFTLSNM 312 (321)
Q Consensus 252 ---------------~i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~~---~~~H~~~~~a~~~~~~~~~-~~vltH~ 312 (321)
+++|+|||.+++. +.++++|+||||||+.+.. ..+|++..|+++.+++++. +++|+|+
T Consensus 168 ~~~gg~~~t~e~~~~~vvysGDT~~~~~---~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~ 244 (277)
T TIGR02650 168 KEEGGDDFTREEHHKILLIIGDDLAADD---EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHH 244 (277)
T ss_pred HHhCCccccccccCcEEEEeCCCCCCCh---HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 7999999998843 6788999999999998753 3579999999999999997 9999999
Q ss_pred cCCCC
Q 020812 313 SLTIF 317 (321)
Q Consensus 313 ~~~~~ 317 (321)
+..-+
T Consensus 245 Ssry~ 249 (277)
T TIGR02650 245 ISRRI 249 (277)
T ss_pred ccccc
Confidence 87643
No 15
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.86 E-value=1.8e-20 Score=165.26 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=122.4
Q ss_pred cEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHH
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (321)
+|++|+ .++.++||||+..-.... .+..... ++|+|++||.|.||++++..+.. .+++++|++....+
T Consensus 9 s~~li~----~~~~~iLiDP~~~~~~~~--~~~~~~~-~id~vliTH~H~DH~~~~~~~~~-----~~~~~v~~~~~~~~ 76 (228)
T PRK00685 9 SAFLIE----TGGKKILIDPFITGNPLA--DLKPEDV-KVDYILLTHGHGDHLGDTVEIAK-----RTGATVIANAELAN 76 (228)
T ss_pred eEEEEE----ECCEEEEECCCCCCCCCC--CCChhcC-cccEEEeCCCCccccccHHHHHH-----hCCCEEEEeHHHHH
Confidence 378999 488999999854210000 1111223 89999999999999999876643 34688999988776
Q ss_pred HHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCCce----------EEEEEEc----cEEEe
Q 020812 192 VMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYR----------SLGFRFG----NICYI 256 (321)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~----------s~g~~i~----~i~ys 256 (321)
.+... + .. ++..++ ++.+++++++|+++|+.|..... ++||+++ +++|+
T Consensus 77 ~~~~~------------~--~~--~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~ 140 (228)
T PRK00685 77 YLSEK------------G--VE--KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHA 140 (228)
T ss_pred HHHhc------------C--CC--ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEe
Confidence 65432 0 00 223343 56789999999999999976421 5899996 99999
Q ss_pred CCCCCCCc-chhhhcCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecc
Q 020812 257 SDVSEIPE-ETYPFLQDCEILIMDALRPDRSSSTHFGLPRVDKFLAYSGN-QFTLSNMS 313 (321)
Q Consensus 257 GDt~~~~~-~~~~~~~~~dlli~ea~~~~~~~~~H~~~~~a~~~~~~~~~-~~vltH~~ 313 (321)
||+.+.++ ..+....++|++++.... ..|++.+||.++++++++ +++++|+.
T Consensus 141 GDt~~~~~~~~~~~~~~~D~~~~~~~~-----~~h~~~~ea~~~~~~~~~k~~v~~H~~ 194 (228)
T PRK00685 141 GDTGLFSDMKLIGELHKPDVALLPIGD-----NFTMGPEDAALAVELIKPKIVIPMHYN 194 (228)
T ss_pred cCccchhHHHHHHHhhCCCEEEEecCC-----ccccCHHHHHHHHHhhCCCEEEEeccC
Confidence 99998754 222223578999986532 469999999999999998 99999985
No 16
>PRK04286 hypothetical protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=170.63 Aligned_cols=214 Identities=15% Similarity=0.155 Sum_probs=127.6
Q ss_pred eEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCch-----------
Q 020812 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFY----------- 136 (321)
Q Consensus 68 ~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~----------- 136 (321)
|++.+||+|+. | +.++|++|+ .++.+||||+|....
T Consensus 1 m~~~~l~s~s~-g----------------------------~~~~~~~I~----~~~~~iLID~G~~~~~~~~~~~~~~~ 47 (298)
T PRK04286 1 MKIIPLASESL-G----------------------------VRSMATFVE----TKDVRILIDPGVSLAPRRYGLPPHPI 47 (298)
T ss_pred CEEEEEEeCCC-C----------------------------ceeeEEEEE----ECCeEEEEcCCCCcCccccCCCCcch
Confidence 78999999763 2 235688999 488999999995431
Q ss_pred --HHHHhhccc--CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHH-HHhhccc--cccccCCCCC
Q 020812 137 --HSALRWFPA--YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV-MKKTHYY--LVDTSGIIPG 209 (321)
Q Consensus 137 --~~l~~~l~~--~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~-l~~~~~~--~~~~~~~~~~ 209 (321)
..+.+.+.. ..+.+||+||+||.|+||+.|+..++.....+..++++|....+... ......+ ..... ....
T Consensus 48 ~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 126 (298)
T PRK04286 48 ELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAP-RFLK 126 (298)
T ss_pred hHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHH-hHHH
Confidence 112222222 22478999999999999999886652110011223566665444311 0000000 00000 0000
Q ss_pred C-CccceeeEEeCCceEEECCEEEEEE-EeccCCCceEEEEEE----c----cEEEeCCCC-CCCcchhhhcC--CCCEE
Q 020812 210 A-AVSELQFNIIDEEPFTVQDLKITPL-PVWHGAGYRSLGFRF----G----NICYISDVS-EIPEETYPFLQ--DCEIL 276 (321)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~v~~~-p~~H~~g~~s~g~~i----~----~i~ysGDt~-~~~~~~~~~~~--~~dll 276 (321)
. ..........+++.+.+++++|+.+ ++.|.....++||++ + +++|+||++ ..++++.+.++ ++|+|
T Consensus 127 ~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlL 206 (298)
T PRK04286 127 AVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFILEKKPDVV 206 (298)
T ss_pred HHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEE
Confidence 0 0000122233467889999999966 888965213555544 3 899999998 55677777776 89999
Q ss_pred EEccc--CCCCC----CCCCCCHHHHHHHHHHhCC-eEEEE-eccCCC
Q 020812 277 IMDAL--RPDRS----SSTHFGLPRVDKFLAYSGN-QFTLS-NMSLTI 316 (321)
Q Consensus 277 i~ea~--~~~~~----~~~H~~~~~a~~~~~~~~~-~~vlt-H~~~~~ 316 (321)
++++. +.... ...|++.+.+.+++.. ++ +++|+ |++.++
T Consensus 207 i~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~-~~k~liLtHHls~~~ 253 (298)
T PRK04286 207 IIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN-TPETLILDHHLLRDK 253 (298)
T ss_pred EeCCcchhhhhhhhccccHHHHHHHHHHHHhc-CCCEEEEeccccccC
Confidence 99983 33212 2456666666666655 75 99999 887764
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.82 E-value=3.5e-19 Score=170.98 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=130.6
Q ss_pred cccccEEEEEecCCCCCceEEEecCCCchHH-H---------HhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccc
Q 020812 108 RRLNTSILIRYPGPSGRRNILIDAGKFFYHS-A---------LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNV 177 (321)
Q Consensus 108 ~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~-l---------~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~ 177 (321)
..+.+|++|+. ++..+|||||.+.... + .+++. ....+|++|||||.|.||++|++.+....
T Consensus 11 eiG~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~-~~~~~i~~I~iTH~H~DHiggl~~l~~~~--- 82 (422)
T TIGR00649 11 EIGKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQ-ENQDKVKGIFITHGHEDHIGAVPYLFHTV--- 82 (422)
T ss_pred ccCCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHH-hccccCCEEEECCCChHHhCcHHHHHHhC---
Confidence 45678999994 7789999999864321 1 11122 12458999999999999999999987642
Q ss_pred cccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEEC-CEEEEEEEeccCCCceEEEEEEc----
Q 020812 178 QRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG---- 251 (321)
Q Consensus 178 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~~p~~H~~g~~s~g~~i~---- 251 (321)
+..+||+++.+...++..... . +... ...+..++ ++.++++ +++|+++++.|... .++||+++
T Consensus 83 -~~~~Vy~~~~t~~~l~~~~~~---~-----~~~~-~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p-~s~g~~i~~~~~ 151 (422)
T TIGR00649 83 -GFPPIYGTPLTIALIKSKIKE---N-----KLNV-RTDLLEIHEGEPIETGENHTIEFIRITHSIP-DSVGFALHTPLG 151 (422)
T ss_pred -CCCeEEeCHHHHHHHHHHHHh---c-----CCCC-CCceEEeCCCCEEEeCCceEEEEEECCCCCc-ceEEEEEEeCCc
Confidence 246899999988877654320 0 0000 11234444 5788996 59999999999631 58999984
Q ss_pred cEEEeCCCCCCC-------cc---hhhhc-CCCCEEEEcccCCCCC---CCCCCCHHHHHHHHHHhCCeEEEEeccCC
Q 020812 252 NICYISDVSEIP-------EE---TYPFL-QDCEILIMDALRPDRS---SSTHFGLPRVDKFLAYSGNQFTLSNMSLT 315 (321)
Q Consensus 252 ~i~ysGDt~~~~-------~~---~~~~~-~~~dlli~ea~~~~~~---~~~H~~~~~a~~~~~~~~~~~vltH~~~~ 315 (321)
+++|+||+.... .+ +.+.. +++|+|++|+|+.... ...|...+++.+++++.+.+++++||+.+
T Consensus 152 ~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~viv~~fa~~ 229 (422)
T TIGR00649 152 YIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGRVIVATFASN 229 (422)
T ss_pred EEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 799999996421 11 22222 4689999999987432 24466667777778777779999999754
No 18
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.79 E-value=6.6e-18 Score=167.89 Aligned_cols=177 Identities=22% Similarity=0.270 Sum_probs=113.0
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchH---HHHhhcc--cCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEe
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYH---SALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYV 185 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~---~l~~~l~--~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~ 185 (321)
.+|++|+. ++..+|||||..... .....+. ...+.+||+|||||.|.||+|+++.+.+.. ...+||+
T Consensus 188 ~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g----~~gpIY~ 259 (630)
T TIGR03675 188 RSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYG----YDGPVYC 259 (630)
T ss_pred CCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhC----CCCceee
Confidence 57999994 788999999976421 1112221 234678999999999999999999987641 2468999
Q ss_pred chhhHHHHHhhcccccc---cc---CCCCCCCccc--eeeEEeC-CceEEE-CCEEEEEEEeccCCCceEEEEEEc----
Q 020812 186 AMRDFEVMKKTHYYLVD---TS---GIIPGAAVSE--LQFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG---- 251 (321)
Q Consensus 186 ~~~~~~~l~~~~~~~~~---~~---~~~~~~~~~~--~~~~~~~-~~~~~~-~~~~v~~~p~~H~~g~~s~g~~i~---- 251 (321)
+..+.+.+...+..... .. ..+....... ..+..++ ++.+++ ++++++++++.|..|...+.+.+.
T Consensus 260 T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~ 339 (630)
T TIGR03675 260 TPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLY 339 (630)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCE
Confidence 99877654332111100 00 0000000000 1234444 567777 589999999999997544455553
Q ss_pred cEEEeCCCCCCCcchhh----hcCCCCEEEEcccCCCCCCCCCCCHHHH
Q 020812 252 NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPRV 296 (321)
Q Consensus 252 ~i~ysGDt~~~~~~~~~----~~~~~dlli~ea~~~~~~~~~H~~~~~a 296 (321)
+++|+||+......+++ ...++|+||+|+||.+.. ..|-+.+++
T Consensus 340 ~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~-~~~~~r~~~ 387 (630)
T TIGR03675 340 NIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD-DYQPSREEA 387 (630)
T ss_pred EEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC-CCCCCHHHH
Confidence 79999999875443332 235799999999997532 235555444
No 19
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.77 E-value=6.1e-17 Score=150.78 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=106.2
Q ss_pred CCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceE
Q 020812 147 GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPF 225 (321)
Q Consensus 147 ~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (321)
++.+||+|++||.|.||+. ...+........+.++++++....+.+... | .+..++..++ ++.+
T Consensus 106 ~i~~IDaVLiTH~H~DHlD-~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~------------G--vp~~rv~~v~~Ge~i 170 (355)
T PRK11709 106 AIREIDAVLATHDHSDHID-VNVAAAVLQNCADHVKFIGPQACVDLWIGW------------G--VPKERCIVVKPGDVV 170 (355)
T ss_pred HCCCCCEEEECCCcccccC-hHHHHHHHhhcCCCcEEEEcHHHHHHHHhc------------C--CCcceEEEecCCCcE
Confidence 3578999999999999984 444333221112457789988877665442 1 1112445555 6789
Q ss_pred EECCEEEEEEEeccCC-----------C---------ceEEEEEEc----cEEEeCCCCCCCcchhhhcC--CCCEEEEc
Q 020812 226 TVQDLKITPLPVWHGA-----------G---------YRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMD 279 (321)
Q Consensus 226 ~~~~~~v~~~p~~H~~-----------g---------~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~--~~dlli~e 279 (321)
++++++|+++|+.|.. . ..++||+|+ +|+|+|||.+++ .+.+..+ ++|++++.
T Consensus 171 ~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~-~~~~i~~~~~iDvall~ 249 (355)
T PRK11709 171 KVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSN-YFAKHGNDHQIDVALGS 249 (355)
T ss_pred EECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccH-HHHHHHhcCCCCEEEec
Confidence 9999999999995531 1 136899995 999999999874 2443332 58999986
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecc
Q 020812 280 ALRPDRSSSTHFGLPRVDKFLAYSGN-QFTLSNMS 313 (321)
Q Consensus 280 a~~~~~~~~~H~~~~~a~~~~~~~~~-~~vltH~~ 313 (321)
..........|++++++.++++.+++ +++++|+.
T Consensus 250 iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~d 284 (355)
T PRK11709 250 YGENPRGITDKMTSIDILRMAESLNAKVVIPVHHD 284 (355)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEEChh
Confidence 65422234579999999999999998 89999974
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.73 E-value=9.8e-17 Score=135.49 Aligned_cols=142 Identities=24% Similarity=0.268 Sum_probs=98.1
Q ss_pred cccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEech
Q 020812 108 RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (321)
Q Consensus 108 ~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (321)
.+.++|++|+ .+++.+|||||.+...++.+.+.+.+.++|++|++||.|.||++|++.+.+. ++++||+++
T Consensus 3 ~~~~~~~li~----~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-----~~~~i~~~~ 73 (183)
T smart00849 3 GVGVNSYLVE----GDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-----PGAPVYAPE 73 (183)
T ss_pred ccceeEEEEE----eCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-----CCCcEEEch
Confidence 3567899999 4788999999976544554445556678999999999999999999888763 468899999
Q ss_pred hhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEe-ccCCCceEEEEEEc--cEEEeCCCCCCC
Q 020812 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIP 263 (321)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~-~H~~g~~s~g~~i~--~i~ysGDt~~~~ 263 (321)
...+.+........... ........+..+. ++.+.+++.+++.++. .|+++ +++|.++ +++|+||+....
T Consensus 74 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~~~~~~~~~vl~~gD~~~~~ 147 (183)
T smart00849 74 GTAELLKDLLKLGGALG----AEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPG--SIVLYLPEGKILFTGDLLFSG 147 (183)
T ss_pred hhhHHHhccchhccccC----cCCCCCccceecCCCCEEEeCCceEEEEECCCCCCC--cEEEEECCCCEEEECCeeecc
Confidence 88887764322100000 0000111233333 5788888777776655 47774 5678886 899999998764
Q ss_pred c
Q 020812 264 E 264 (321)
Q Consensus 264 ~ 264 (321)
+
T Consensus 148 ~ 148 (183)
T smart00849 148 G 148 (183)
T ss_pred C
Confidence 4
No 21
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.7e-15 Score=142.54 Aligned_cols=178 Identities=22% Similarity=0.230 Sum_probs=116.2
Q ss_pred cccEEEEEecCCCCCceEEEecCCCchHHHHhhcccC-CCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY-GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~-~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
+.+|.+|+. ++..||+|||....... +...-. ...++|+|+|||+|.||+++++.+.... . ..+||+++.
T Consensus 13 g~s~~~l~~----~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~---~-~~~v~aT~~ 83 (427)
T COG1236 13 GRSCVLLET----GGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG---F-EGPVYATPP 83 (427)
T ss_pred CcEEEEEEE----CCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc---c-CCceeeccC
Confidence 357999995 66999999998642221 111111 1226999999999999999999987642 2 378999999
Q ss_pred hHHHHHhhccccccccC-----CCCCCCcc--ceeeEEeC-CceEEECCEEEEEEEeccCCCceEEEEEEc--cEEEeCC
Q 020812 189 DFEVMKKTHYYLVDTSG-----IIPGAAVS--ELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG--NICYISD 258 (321)
Q Consensus 189 ~~~~l~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~--~i~ysGD 258 (321)
+.+...-.......... .+...+.. ...++.++ ++++++++++|+++++.|.+|...+-+..+ +++|+||
T Consensus 84 T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~~~~ilytGD 163 (427)
T COG1236 84 TAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDGGRILYTGD 163 (427)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeCCceEEEEec
Confidence 98776544322211110 00000011 11344465 689999999999999999997544444443 8999999
Q ss_pred CCCCCcchhhh---cCCCCEEEEcccCCCCCCCCCCCHHHHHHH
Q 020812 259 VSEIPEETYPF---LQDCEILIMDALRPDRSSSTHFGLPRVDKF 299 (321)
Q Consensus 259 t~~~~~~~~~~---~~~~dlli~ea~~~~~~~~~H~~~~~a~~~ 299 (321)
.....+.+..- ...+|+||+|+||.+ ..|.+.++..+.
T Consensus 164 ~~~~~~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~e~~ 204 (427)
T COG1236 164 VKRRKDRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEVERR 204 (427)
T ss_pred cCCCcCCCCCccccCCCCcEEEEecccCC---ccCCCHHHHHHH
Confidence 97644433321 122699999999987 556666655444
No 22
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.64 E-value=4.7e-15 Score=138.36 Aligned_cols=182 Identities=23% Similarity=0.291 Sum_probs=118.7
Q ss_pred cccEEEEEecCCCCCceEEEecCCCchH---HHHhhc--ccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEE
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKFFYH---SALRWF--PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIY 184 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~---~l~~~l--~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~ 184 (321)
+.||+||. +++.++|+|||..... ....+| .+..+..+|+|+|||+|.||+|=++.|.+.. -+-|||
T Consensus 193 GRSa~lv~----T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYg----y~GPVY 264 (637)
T COG1782 193 GRSALLVS----TPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYG----YDGPVY 264 (637)
T ss_pred cceeEEEe----cCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcC----CCCCee
Confidence 46899999 5889999999975322 122222 2334457999999999999999999887653 256999
Q ss_pred echhhHHHHHhhccccccccCCCCCCC-------ccc-e-eeEEeC-CceEEE-CCEEEEEEEeccCCCceEEEEEEc--
Q 020812 185 VAMRDFEVMKKTHYYLVDTSGIIPGAA-------VSE-L-QFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG-- 251 (321)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~-~-~~~~~~-~~~~~~-~~~~v~~~p~~H~~g~~s~g~~i~-- 251 (321)
+++++.+.+.-.....++... ..|.. +.. + ....++ ++.-++ .+++++...+.|-.|....-+-|+
T Consensus 265 ~T~PTRDlm~LLq~Dyi~va~-keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdG 343 (637)
T COG1782 265 CTPPTRDLMVLLQLDYIEVAE-KEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDG 343 (637)
T ss_pred eCCCcHHHHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCC
Confidence 999887654322111111000 00111 111 1 122233 333333 479999999999998666667776
Q ss_pred --cEEEeCCCCCCCcchhhh----cCCCCEEEEcccCCCCCCCCCCCHHHHHHHHH
Q 020812 252 --NICYISDVSEIPEETYPF----LQDCEILIMDALRPDRSSSTHFGLPRVDKFLA 301 (321)
Q Consensus 252 --~i~ysGDt~~~~~~~~~~----~~~~dlli~ea~~~~~~~~~H~~~~~a~~~~~ 301 (321)
+++|+||..+....+++- ++.++.||+|+||.. ....+.+.++|.+-+.
T Consensus 344 lyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg-~~d~q~~R~eaE~~L~ 398 (637)
T COG1782 344 LYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGG-RDDVQPPREEAEKELI 398 (637)
T ss_pred ceeEEEecccccceeeecChhhccCcchhheeeeeccCC-ccccCccHHHHHHHHH
Confidence 999999998765555543 456999999999972 3456777777765543
No 23
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.63 E-value=2.6e-14 Score=139.09 Aligned_cols=188 Identities=19% Similarity=0.274 Sum_probs=129.5
Q ss_pred cccccEEEEEecCCCCCceEEEecCCCchHH-------H---HhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccc
Q 020812 108 RRLNTSILIRYPGPSGRRNILIDAGKFFYHS-------A---LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNV 177 (321)
Q Consensus 108 ~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~-------l---~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~ 177 (321)
..+.+++++++ ++..+++|||..+... + ..++. ....+|++|||||.|.||+|+++.+....
T Consensus 19 EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~-~n~~kvkgI~lTHgHeDHIGaip~ll~~~--- 90 (555)
T COG0595 19 EIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLE-ENKDKVKGIFLTHGHEDHIGALPYLLKQV--- 90 (555)
T ss_pred hhccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhh-hccccceEEEecCCchhhccchHHHHhcC---
Confidence 34467899996 7899999999653211 0 01111 22358999999999999999999998742
Q ss_pred cccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCCceEEEEEEc----c
Q 020812 178 QRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----N 252 (321)
Q Consensus 178 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~----~ 252 (321)
..+|||+++-+...++...... +......+++.++ ++.++++++.|+++++.|+.. .++||.+. .
T Consensus 91 -~~~piy~s~lt~~Li~~k~~~~--------~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIP-ds~g~~i~Tp~G~ 160 (555)
T COG0595 91 -LFAPIYASPLTAALIKEKLKEH--------GLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIP-DSLGIVIKTPEGN 160 (555)
T ss_pred -CcCceecCHhhHHHHHHHHHHh--------ccccccCceEEeCCCCeEEeCcEEEEEEeecccCc-cceEEEEECCCcc
Confidence 2499999999988887653310 0001112455555 578899999999999999984 69999996 7
Q ss_pred EEEeCCCCCCCc----------chhhhcC-CCCEEEEcccCCCCCCCCCCCH-----HHHHHHHHHhCCeEEEEeccCC
Q 020812 253 ICYISDVSEIPE----------ETYPFLQ-DCEILIMDALRPDRSSSTHFGL-----PRVDKFLAYSGNQFTLSNMSLT 315 (321)
Q Consensus 253 i~ysGDt~~~~~----------~~~~~~~-~~dlli~ea~~~~~~~~~H~~~-----~~a~~~~~~~~~~~vltH~~~~ 315 (321)
|+|+||....+. .+.+..+ ++.+|+.|+|... .++.+.. +.+.++++.++.+++++=|+.+
T Consensus 161 Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~--~pg~t~SE~~v~~~l~~i~~~a~grVIv~tfaSn 237 (555)
T COG0595 161 IVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE--NPGFTPSESEVGENLEDIIRNAKGRVIVTTFASN 237 (555)
T ss_pred EEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC--CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEchhh
Confidence 999999853321 2223333 4899999999875 3333333 3445556666668888876654
No 24
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.54 E-value=7.9e-14 Score=124.53 Aligned_cols=118 Identities=24% Similarity=0.427 Sum_probs=84.9
Q ss_pred cccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhh
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~ 189 (321)
.|.+|+|.. .+++.+|||+|.. ..+.+.+++.+. ++++|++||.|+||++|+..+.+.+ +++||+++.+
T Consensus 9 dN~~yli~~---~~~~~ilID~g~~--~~i~~~l~~~g~-~l~~Il~TH~H~DHigG~~~l~~~~-----~~~V~~~~~~ 77 (248)
T TIGR03413 9 DNYIWLLHD---PDGQAAVVDPGEA--EPVLDALEARGL-TLTAILLTHHHHDHVGGVAELLEAF-----PAPVYGPAEE 77 (248)
T ss_pred cEEEEEEEc---CCCCEEEEcCCCh--HHHHHHHHHcCC-eeeEEEeCCCCccccCCHHHHHHHC-----CCeEEecccc
Confidence 367889883 2348999999975 345566666665 6999999999999999999987643 3789998654
Q ss_pred HHHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEEEEec-cCCCceEEEEEEc--cEEEeCCCCC
Q 020812 190 FEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 261 (321)
Q Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-H~~g~~s~g~~i~--~i~ysGDt~~ 261 (321)
. . +. ......+++.+.+++.+++.+++. |++|+ ++|.+. +++|+||+..
T Consensus 78 -----~-----~------~~-----~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~--i~~~~~~~~~lftGDtl~ 129 (248)
T TIGR03413 78 -----R-----I------PG-----ITHPVKDGDTVTLGGLEFEVLAVPGHTLGH--IAYYLPDSPALFCGDTLF 129 (248)
T ss_pred -----c-----C------CC-----CcEEeCCCCEEEECCEEEEEEECCCCCccc--EEEEECCCCEEEEcCccc
Confidence 0 0 01 011223467888888877766544 88864 788775 8999999854
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.53 E-value=8.4e-14 Score=132.56 Aligned_cols=124 Identities=19% Similarity=0.295 Sum_probs=89.1
Q ss_pred ccEEEEEecCCCCCceEEEecCCC-chHHHHhhccc-CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~~-~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
.+||||. +++.+|||+|.+ ....+.+.+++ .++.+|++|++||.|.||++|+..+.+. .++++||+++.
T Consensus 33 ~NsyLI~-----~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~----~p~a~V~~~~~ 103 (394)
T PRK11921 33 YNSYLIK-----DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE----IPDTPIYCTKN 103 (394)
T ss_pred EEEEEEe-----CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH----CCCCEEEECHH
Confidence 4699998 357899999964 33445544433 4567899999999999999999988764 45789999988
Q ss_pred hHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEE--EeccCCCceEEEEEEc--cEEEeCCC
Q 020812 189 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPL--PVWHGAGYRSLGFRFG--NICYISDV 259 (321)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~--p~~H~~g~~s~g~~i~--~i~ysGDt 259 (321)
..+.+...+.. ......++ ++.+++|+.+++.+ |..|++++ +.+.+. +++|+||+
T Consensus 104 ~~~~l~~~~~~--------------~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~--~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 104 GAKSLKGHYHQ--------------DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDS--MFTYLTGDNILFSNDA 163 (394)
T ss_pred HHHHHHHHhCC--------------CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCc--eEEEEcCCCEEEecCc
Confidence 77766542110 01233343 67899999888877 55599963 444444 89999998
No 26
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.53 E-value=9.3e-14 Score=123.83 Aligned_cols=180 Identities=22% Similarity=0.354 Sum_probs=113.7
Q ss_pred CceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCchHHHHh----
Q 020812 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALR---- 141 (321)
Q Consensus 66 ~~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~---- 141 (321)
.+++++-||.|.-. +.+|+||.. ++++|++|||....-+-.+
T Consensus 2 p~i~v~pLGAGQdv------------------------------GrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPd 47 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDV------------------------------GRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPD 47 (501)
T ss_pred CcceEEeccCCccc------------------------------CceEEEEEE----CCcEEEEecccccccCccccCCC
Confidence 46889999987532 357999995 8899999999742111111
Q ss_pred --hcccCC-C-CCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHH---HHhhccccccccCCCCCCC-c-
Q 020812 142 --WFPAYG-I-RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV---MKKTHYYLVDTSGIIPGAA-V- 212 (321)
Q Consensus 142 --~l~~~~-~-~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~---l~~~~~~~~~~~~~~~~~~-~- 212 (321)
++.+.| + +-||.|+|||+|.||+|.|+.+.+... -+-|||++.++.+. +.+.+.... ....|.. .
T Consensus 48 FSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G---Y~GPIYMt~PTkaicPvlLeDyRkv~---vd~kGe~n~F 121 (501)
T KOG1136|consen 48 FSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG---YDGPIYMTYPTKAICPVLLEDYRKVA---VDRKGESNFF 121 (501)
T ss_pred ceeecCCCCcccceeEEEEeeecccccccccchHhhhC---CCCceEEecchhhhchHHHHHHHHHh---ccccCcccce
Confidence 122222 1 569999999999999999999988653 25789998776543 222111100 0001110 0
Q ss_pred -----cc-e-eeEEeC-CceEEE-CCEEEEEEEeccCCCceEEEEEEc--cEEEeCCCCCCCcchhh--hc--CCCCEEE
Q 020812 213 -----SE-L-QFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIPEETYP--FL--QDCEILI 277 (321)
Q Consensus 213 -----~~-~-~~~~~~-~~~~~~-~~~~v~~~p~~H~~g~~s~g~~i~--~i~ysGDt~~~~~~~~~--~~--~~~dlli 277 (321)
.. . ++..++ .+.+.+ .++.|+++.+.|..|...+-..++ +++|+||....|+.-+. ++ -+.|+||
T Consensus 122 T~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLI 201 (501)
T KOG1136|consen 122 TTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLI 201 (501)
T ss_pred eHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecceeEEEecCccCCcccccchhhhccccCceEE
Confidence 00 0 112222 245555 479999999999997433333444 99999999777764332 22 2589999
Q ss_pred EcccCCCC
Q 020812 278 MDALRPDR 285 (321)
Q Consensus 278 ~ea~~~~~ 285 (321)
.|+|+...
T Consensus 202 sESTYatt 209 (501)
T KOG1136|consen 202 SESTYATT 209 (501)
T ss_pred eeccceee
Confidence 99998653
No 27
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.50 E-value=2.5e-13 Score=121.79 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=82.0
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
|.+|||... ..+..+|||+|. ...+++.+++.+. +|++|++||.|+||++|+..+.+. .+.++||++....
T Consensus 12 Ny~Yli~d~--~~~~~vlIDp~~--~~~il~~l~~~g~-~l~~Il~TH~H~DH~gG~~~l~~~----~~~~~V~~~~~~~ 82 (258)
T PLN02469 12 NYAYLIIDE--STKDAAVVDPVD--PEKVLQAAHEHGA-KIKLVLTTHHHWDHAGGNEKIKKL----VPGIKVYGGSLDN 82 (258)
T ss_pred eEEEEEEeC--CCCeEEEECCCC--hHHHHHHHHHcCC-cccEEEecCCCCccccCHHHHHHH----CCCCEEEEechhc
Confidence 458998741 235799999985 3556666666665 899999999999999999999875 2468899875420
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEeCCceEEECC---EEEEEEEeccCCCceEEEEEEc------cEEEeCCCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD---LKITPLPVWHGAGYRSLGFRFG------NICYISDVSE 261 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~p~~H~~g~~s~g~~i~------~i~ysGDt~~ 261 (321)
. ++ ....+.+++.+.+++ +++..+|+ |++|+ ++|.+. .++|+||+-.
T Consensus 83 ------~----------~~-----~~~~v~~gd~i~lg~~~~~~vi~tPG-HT~gh--i~~~~~~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 83 ------V----------KG-----CTHPVENGDKLSLGKDVNILALHTPC-HTKGH--ISYYVTGKEGEDPAVFTGDTLF 138 (258)
T ss_pred ------C----------CC-----CCeEeCCCCEEEECCceEEEEEECCC-CCCCC--EEEEeccCCCCCCEEEecCccc
Confidence 0 01 011223467788874 45566676 99965 677664 4999999843
No 28
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.47 E-value=5.6e-13 Score=122.66 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=83.6
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
|.+|+|... ..+..++||+|.. ..+.+.+++.+. +|++|++||.|+||++|+..+.+.+ +++||+++.+.
T Consensus 87 Ny~Yli~d~--~t~~~~vVDP~~a--~~vl~~l~~~g~-~L~~ILlTH~H~DH~GG~~~L~~~~-----ga~V~g~~~~~ 156 (329)
T PLN02398 87 NYAYLLHDE--DTGTVGVVDPSEA--VPVIDALSRKNR-NLTYILNTHHHYDHTGGNLELKARY-----GAKVIGSAVDK 156 (329)
T ss_pred eEEEEEEEC--CCCEEEEEcCCCH--HHHHHHHHhcCC-CceEEEECCCCchhhCCHHHHHHhc-----CCEEEEehHHh
Confidence 568888631 2357899999864 345555555664 7999999999999999999998753 58999997654
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEE--EEeccCCCceEEEEEEc--cEEEeCCCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITP--LPVWHGAGYRSLGFRFG--NICYISDVSE 261 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~p~~H~~g~~s~g~~i~--~i~ysGDt~~ 261 (321)
+.+ ++ .+..+-+++.+.+++.+++. +|+ |++|| ++|.+. +++|+||+..
T Consensus 157 ~~i--------------~~-----~d~~v~dGd~i~lgg~~l~vi~tPG-HT~Gh--I~~~~~~~~vLFtGDtLf 209 (329)
T PLN02398 157 DRI--------------PG-----IDIVLKDGDKWMFAGHEVLVMETPG-HTRGH--ISFYFPGSGAIFTGDTLF 209 (329)
T ss_pred hhc--------------cC-----CcEEeCCCCEEEECCeEEEEEeCCC-cCCCC--EEEEECCCCEEEECCCcC
Confidence 321 11 12222346778888866554 455 99976 667664 7999999954
No 29
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.47 E-value=9.1e-14 Score=117.34 Aligned_cols=142 Identities=25% Similarity=0.240 Sum_probs=80.8
Q ss_pred ccccEEEEEecCCCCCceEEEecCCCchHHHHh--hcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEec
Q 020812 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALR--WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (321)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~--~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (321)
...+|++|+ ++++.+|||||.+....... ........+|++||+||.|.||++|+..+.+.. +...++..
T Consensus 4 ~~~n~~li~----~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~----~~~~~~~~ 75 (194)
T PF00753_consen 4 GGSNSYLIE----GGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG----PVVIIYSS 75 (194)
T ss_dssp EEEEEEEEE----ETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT----TEEEEEEH
T ss_pred eeEEEEEEE----ECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc----ceeeeecc
Confidence 356799999 48899999999985333221 223456789999999999999999999998863 23334444
Q ss_pred hhhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCCceEEEEEEc--cEEEeCCCCCCC
Q 020812 187 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIP 263 (321)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~--~i~ysGDt~~~~ 263 (321)
................... ............ ......+.......+. |..++..+.+.+. +++|+||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlftGD~~~~~ 150 (194)
T PF00753_consen 76 ADAAKAIRPPDRDSASRRG----PAVPPPPIIDEDEDDLEIGGDRILFIIPG-PGHGSDSLIIYLPGGKVLFTGDLLFSN 150 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHESEEEEEETTTEEEEETTEEEEEEES-SSSSTTEEEEEETTTTEEEEETTSCTT
T ss_pred ccccccccccccccccccc----cccccccceeeecccccccccccccceec-cccCCcceEEEeCCCcEEEeeeEeccC
Confidence 3333222211110000000 000001111122 2333444555554443 5554455555554 999999997653
No 30
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.45 E-value=6.3e-13 Score=118.93 Aligned_cols=116 Identities=20% Similarity=0.302 Sum_probs=81.2
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
|.+|+|.. .+++.+|||+|.. ..+++.+++.+. ++++|++||.|.||++|+..+.+. .+.++||++....
T Consensus 12 Ny~~li~~---~~~~~ilIDpg~~--~~vl~~l~~~g~-~l~~IllTH~H~DHigG~~~l~~~----~~~~~V~~~~~~~ 81 (251)
T PRK10241 12 NYIWVLND---EAGRCLIVDPGEA--EPVLNAIAENNW-QPEAIFLTHHHHDHVGGVKELVEK----FPQIVVYGPQETQ 81 (251)
T ss_pred eEEEEEEc---CCCcEEEECCCCh--HHHHHHHHHcCC-ccCEEEeCCCCchhhccHHHHHHH----CCCCEEEeccccc
Confidence 45677763 3567899999975 455666666665 689999999999999999999875 3467899875431
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEe-CCceEEECCEEEEE--EEeccCCCceEEEEEEccEEEeCCCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITP--LPVWHGAGYRSLGFRFGNICYISDVSE 261 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~--~p~~H~~g~~s~g~~i~~i~ysGDt~~ 261 (321)
. .+ ..+.+ +++.+.+++.+++. .|+ |++|| ++|....++|+||+..
T Consensus 82 ~----------------~~------~~~~v~~g~~i~ig~~~~~vi~tPG-HT~gh--i~~~~~~~lFtGDtlf 130 (251)
T PRK10241 82 D----------------KG------TTQVVKDGETAFVLGHEFSVFATPG-HTLGH--ICYFSKPYLFCGDTLF 130 (251)
T ss_pred c----------------cC------CceEeCCCCEEEeCCcEEEEEEcCC-CCccc--eeeecCCcEEEcCeec
Confidence 1 00 01122 35678887765554 455 99975 6665578999999854
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.44 E-value=1.2e-12 Score=127.18 Aligned_cols=126 Identities=22% Similarity=0.388 Sum_probs=88.3
Q ss_pred cccEEEEEecCCCCCceEEEecCCC-chHHHHhhcc-cCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEech
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFP-AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~-~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (321)
..+||||. +++.+|||+|.. ...++++.+. ..++.+|++|++||.|.||++|++.+++. .++++||+++
T Consensus 34 t~NsYLI~-----~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~----~p~a~V~~s~ 104 (479)
T PRK05452 34 SYNSYLIR-----EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQ----IPDTPIYCTA 104 (479)
T ss_pred EEEEEEEE-----CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHH----CCCCEEEECH
Confidence 45799998 457899999964 3344444443 34567899999999999999999988864 3578999998
Q ss_pred hhHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEEC-CEE--EEEEEeccCCCceEEEEEEc--cEEEeCCC
Q 020812 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLK--ITPLPVWHGAGYRSLGFRFG--NICYISDV 259 (321)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--v~~~p~~H~~g~~s~g~~i~--~i~ysGDt 259 (321)
.....+..... .+..++..++ ++.+.+| +.+ +...|..|+++ ++.+.+. +++|+||.
T Consensus 105 ~~~~~l~~~~~-------------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pg--s~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 105 NAIDSINGHHH-------------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPD--SMMTYLTGDAVLFSNDA 167 (479)
T ss_pred HHHHHHHHhhc-------------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCC--ceEEEEcCCCEEEeccc
Confidence 88776654211 0112344554 6788888 444 45556559995 4555453 99999996
No 32
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.44 E-value=1.6e-12 Score=114.94 Aligned_cols=138 Identities=21% Similarity=0.302 Sum_probs=87.3
Q ss_pred ccEEEEEecCCCCC-ceEEEecCCCc--hHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEech
Q 020812 111 NTSILIRYPGPSGR-RNILIDAGKFF--YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (321)
Q Consensus 111 ~ss~lI~~~~~~~~-~~iLID~G~~~--~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (321)
++++++. .++ ..+|||+|.+. ...+.+.+...+. +|++|++||.|.||++|+..+.+... .++++.++
T Consensus 25 ~~~~~~~----~~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~----~~~~~~~~ 95 (252)
T COG0491 25 NSVYLLV----DGEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG----AAPVIAPA 95 (252)
T ss_pred ccEEEEE----cCCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC----CceEEccc
Confidence 4456665 244 89999999875 4566666666776 99999999999999999998876431 36775554
Q ss_pred hhHHHHHhhccccccccCCCCCCCcc--ceeeEEeCCceEEECC--EEEEEEEeccCCCceEEEEEEc--cEEEeCCCCC
Q 020812 188 RDFEVMKKTHYYLVDTSGIIPGAAVS--ELQFNIIDEEPFTVQD--LKITPLPVWHGAGYRSLGFRFG--NICYISDVSE 261 (321)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~v~~~p~~H~~g~~s~g~~i~--~i~ysGDt~~ 261 (321)
................. ......+ .......+++.+.+++ +++..+|+ |++|| ++|.++ +++|+||...
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpG-HT~g~--~~~~~~~~~~l~~gD~~~ 170 (252)
T COG0491 96 EVPLLLREEILRKAGVT--AEAYAAPGASPLRALEDGDELDLGGLELEVLHTPG-HTPGH--IVFLLEDGGVLFTGDTLF 170 (252)
T ss_pred hhhhhhhcccccccccc--cccCCCCccccceecCCCCEEEecCeEEEEEECCC-CCCCe--EEEEECCccEEEecceec
Confidence 44443333221111000 0000011 1111222456778877 77777885 99965 777777 4999999865
Q ss_pred C
Q 020812 262 I 262 (321)
Q Consensus 262 ~ 262 (321)
.
T Consensus 171 ~ 171 (252)
T COG0491 171 A 171 (252)
T ss_pred c
Confidence 4
No 33
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.41 E-value=1.8e-11 Score=109.99 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=112.6
Q ss_pred cEEEEEecCCCCCceEEEecCCCchHHHHh---hcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFFYHSALR---WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~---~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
+|++|+. ++.+||||+..+....... ......+..+|+|++||.|.||+..- .+..... .+...++++..
T Consensus 15 a~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~-~~~~~~~--~~~~~~~~p~~ 87 (258)
T COG2220 15 AAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDE-TLIALRT--NKAPVVVVPLG 87 (258)
T ss_pred eEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHH-HHHHHhc--CCCcEEEeHHH
Confidence 4899995 7799999998653211110 00112245799999999999999733 3322211 11234555554
Q ss_pred hHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCC-----------ceEEEEEEc----c
Q 020812 189 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAG-----------YRSLGFRFG----N 252 (321)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g-----------~~s~g~~i~----~ 252 (321)
....+.+. + .....+..++ ++.+++++.+++.+++.|... ....+|+++ +
T Consensus 88 ~~~~~~~~------------g--~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~ 153 (258)
T COG2220 88 AGDLLIRD------------G--VEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGR 153 (258)
T ss_pred HHHHHHhc------------C--CCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCce
Confidence 43333221 1 1112334443 467788888888777776541 236778885 8
Q ss_pred EEEeCCCCCCCcchhhhcCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecc
Q 020812 253 ICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRVDKFLAYSGN-QFTLSNMS 313 (321)
Q Consensus 253 i~ysGDt~~~~~~~~~~~~~~dlli~ea~~~~~~~~~H~~~~~a~~~~~~~~~-~~vltH~~ 313 (321)
++++||+.+...........+|+++++....+ ...++..+++.++.+.+++ +++.+|..
T Consensus 154 iyh~GDt~~~~~~~~~~~~~~DvallPig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 154 VYHAGDTGYLFLIIEELDGPVDVALLPIGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred EEeccCccHHHHhhhhhcCCccEEEeccCCCC--CCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 99999998721111222223799999886532 4679999999999999998 88889976
No 34
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.39 E-value=7.7e-12 Score=104.56 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
++|++|+. ++.+||+|+...... . .....++|+|++||.|.||+.- ..+.. .
T Consensus 7 ha~~~ie~----~g~~iliDP~~~~~~-~-----~~~~~~~D~IlisH~H~DH~~~-~~l~~--------~--------- 58 (163)
T PF13483_consen 7 HASFLIET----GGKRILIDPWFSSVG-Y-----APPPPKADAILISHSHPDHFDP-ETLKR--------L--------- 58 (163)
T ss_dssp TTEEEEEE----TTEEEEES--TTT---T------TSS-B-SEEEESSSSTTT-CC-CCCCC--------H---------
T ss_pred eeEEEEEE----CCEEEEECCCCCccC-c-----ccccCCCCEEEECCCccccCCh-hHhhh--------c---------
Confidence 56999994 789999999864111 1 1113689999999999999974 21211 1
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCC-----CceEEEEEEc----cEEEeCCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISDVS 260 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~-----g~~s~g~~i~----~i~ysGDt~ 260 (321)
.. +...+. ++.+++++++|+.++..|.. ....++|.++ ++++.||+.
T Consensus 59 ---~~--------------------~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~ 115 (163)
T PF13483_consen 59 ---DR--------------------DIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTG 115 (163)
T ss_dssp ---HT--------------------SSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--
T ss_pred ---cc--------------------ccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCc
Confidence 00 122232 46788999999999998852 1246888886 999999997
Q ss_pred CCC-cchhhhcCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEe
Q 020812 261 EIP-EETYPFLQDCEILIMDALRPDRSSSTHFGLPRVDKFLAYSGN-QFTLSN 311 (321)
Q Consensus 261 ~~~-~~~~~~~~~~dlli~ea~~~~~~~~~H~~~~~a~~~~~~~~~-~~vltH 311 (321)
..+ .+....+.++|++++...- ...+..+++.+++++++| .++.+|
T Consensus 116 ~~~~~~~~~~~~~vDvl~~p~~g-----~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 116 FPPDDEQLKQLGKVDVLFLPVGG-----PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp S---HHHHHHH-S-SEEEEE--T-----TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred cCCCHHHHhcccCCCEEEecCCC-----CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 532 2344556789999997755 458999999999999998 566665
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.38 E-value=7.5e-12 Score=126.55 Aligned_cols=175 Identities=14% Similarity=0.218 Sum_probs=111.3
Q ss_pred CceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCCc------hHHH
Q 020812 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFF------YHSA 139 (321)
Q Consensus 66 ~~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~------~~~l 139 (321)
+..+|+||..|.+ .|++|+. +++.+|||+|... ...+
T Consensus 438 ~~~~v~~lDVGqG---------------------------------daili~~----~~~~iLIDtG~~~~~~~~~~~~l 480 (662)
T TIGR00361 438 SSWQVDMLDVGQG---------------------------------LAMFIGA----NGKGILYDTGEPWREGSLGEKVI 480 (662)
T ss_pred CCEEEEEEecCCc---------------------------------eEEEEEE----CCeEEEEeCCCCCCCCCccHHHH
Confidence 4689999998864 2889994 6689999999752 2347
Q ss_pred HhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEE
Q 020812 140 LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNI 219 (321)
Q Consensus 140 ~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (321)
..+|+..|++ ||+|++||.|.||++|+..+.+.. +...++.+.... .. +. .....
T Consensus 481 ~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~----~v~~i~~~~~~~----~~------------~~----~~~~~ 535 (662)
T TIGR00361 481 IPFLTAKGIK-LEALILSHADQDHIGGAEIILKHH----PVKRLVIPKGFV----EE------------GV----AIEEC 535 (662)
T ss_pred HHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhC----CccEEEeccchh----hC------------CC----ceEec
Confidence 7788888997 999999999999999999998753 345677764410 00 00 00112
Q ss_pred eCCceEEECCEEEEEEEecc----CCCceEEEEEEc----cEEEeCCCCCCCcc-hhhhc--CCCCEEEEcccCCCCCCC
Q 020812 220 IDEEPFTVQDLKITPLPVWH----GAGYRSLGFRFG----NICYISDVSEIPEE-TYPFL--QDCEILIMDALRPDRSSS 288 (321)
Q Consensus 220 ~~~~~~~~~~~~v~~~p~~H----~~g~~s~g~~i~----~i~ysGDt~~~~~~-~~~~~--~~~dlli~ea~~~~~~~~ 288 (321)
..++.+++++++++.+.-.. ..+..|+.++++ +++++||.....|+ +.+.. -++|+|... .|+
T Consensus 536 ~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~~------HHG 609 (662)
T TIGR00361 536 KRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQVG------HHG 609 (662)
T ss_pred CCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHhcccCcCccEEEeC------CCC
Confidence 23567888888888763211 123457888776 89999999764332 22211 246677541 111
Q ss_pred CCCCHHHHHHHHHHhCCeEEEE
Q 020812 289 THFGLPRVDKFLAYSGNQFTLS 310 (321)
Q Consensus 289 ~H~~~~~a~~~~~~~~~~~vlt 310 (321)
...+. ..+++++++|+++++
T Consensus 610 S~~Ss--s~~fl~~v~P~~aii 629 (662)
T TIGR00361 610 SKTST--SEELIQQVQPKVAII 629 (662)
T ss_pred CCCCC--hHHHHHhcCCCEEEE
Confidence 12221 345666777755543
No 36
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.37 E-value=6.4e-12 Score=112.01 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
+.||+|...+..+++.+|||+|......+++.+++.++ +|++|++||.|+||++|+..+.+. .+.+++|+++..
T Consensus 23 ~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~-~i~~Il~TH~H~DHigg~~~l~~~----~~~a~v~~~~~~- 96 (251)
T PLN02962 23 TYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL-KLIYAMNTHVHADHVTGTGLLKTK----LPGVKSIISKAS- 96 (251)
T ss_pred eEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCC-eeEEEEcCCCCchhHHHHHHHHHH----CCCCeEEecccc-
Confidence 45888863100145789999986544556666666775 789999999999999999999764 246788875421
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEE--EEEeccCCCceEEEEEEc--------cEEEeCCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKIT--PLPVWHGAGYRSLGFRFG--------NICYISDVS 260 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~p~~H~~g~~s~g~~i~--------~i~ysGDt~ 260 (321)
+. ..+...-+++.+.+++.+++ .+|+ |++| +++|.+. +++|+||+.
T Consensus 97 ------------------~~---~~d~~l~~g~~i~~g~~~l~vi~tPG-HT~g--~v~~~~~d~~~~~~~~~lftGD~L 152 (251)
T PLN02962 97 ------------------GS---KADLFVEPGDKIYFGDLYLEVRATPG-HTAG--CVTYVTGEGPDQPQPRMAFTGDAL 152 (251)
T ss_pred ------------------CC---CCCEEeCCCCEEEECCEEEEEEECCC-CCcC--cEEEEeccCCCCCccceEEECCee
Confidence 00 01112224677888886555 4565 8885 5777664 499999984
No 37
>PRK11539 ComEC family competence protein; Provisional
Probab=99.36 E-value=9.4e-12 Score=127.42 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=100.5
Q ss_pred CCceEEEEEcccCCCCcccccccCCCCCCCcccccccCCCCCCcccccEEEEEecCCCCCceEEEecCCC------chHH
Q 020812 65 AQQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKF------FYHS 138 (321)
Q Consensus 65 ~~~~~i~~LGtG~s~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~------~~~~ 138 (321)
.++.+|+||..|.+ .|++|+ ++++.+|||+|.. ....
T Consensus 498 ~~~~~v~~lDVGqG---------------------------------~a~li~----~~~~~lLiDtG~~~~~~~~~~~~ 540 (755)
T PRK11539 498 EYEWRVDMLDVGHG---------------------------------LAVVIE----RNGKAILYDTGNAWPTGDSAQQV 540 (755)
T ss_pred CCcEEEEEEEccCc---------------------------------eEEEEE----ECCEEEEEeCCCCCCCCcchHHH
Confidence 56799999998864 278899 4789999999974 1245
Q ss_pred HHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeE
Q 020812 139 ALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFN 218 (321)
Q Consensus 139 l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (321)
+..+|+..|+ +||+|++||.|.||++|+..+.+. .+..+++.+..... . ..
T Consensus 541 i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~----~~~~~i~~~~~~~~-----------~-------------~~ 591 (755)
T PRK11539 541 IIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHA----WPMAWIRSPLNWAN-----------H-------------LP 591 (755)
T ss_pred HHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHh----CCcceeeccCcccC-----------c-------------cc
Confidence 6777888898 699999999999999999999875 34566776532100 0 00
Q ss_pred EeCCceEEECCEEEEEE-EeccC---CCceEEEEEEc----cEEEeCCCCCCCcc-hhhhc---CCCCEEEE
Q 020812 219 IIDEEPFTVQDLKITPL-PVWHG---AGYRSLGFRFG----NICYISDVSEIPEE-TYPFL---QDCEILIM 278 (321)
Q Consensus 219 ~~~~~~~~~~~~~v~~~-p~~H~---~g~~s~g~~i~----~i~ysGDt~~~~~~-~~~~~---~~~dlli~ 278 (321)
..+++.+..++++++.+ |..|. .+..|+.++++ +++++||.....|+ +.+.. -++|++..
T Consensus 592 ~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v 663 (755)
T PRK11539 592 CVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV 663 (755)
T ss_pred ccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe
Confidence 12345677788888765 33232 23457888885 89999998653332 22211 14677755
No 38
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.35 E-value=5.1e-11 Score=109.64 Aligned_cols=207 Identities=16% Similarity=0.241 Sum_probs=122.0
Q ss_pred cccccEEEEEecCCCCCceEEEecCCCchH--HHH-h-hccc-C----C----------------CCCccEEEecCCchh
Q 020812 108 RRLNTSILIRYPGPSGRRNILIDAGKFFYH--SAL-R-WFPA-Y----G----------------IRTIDAVIITHSHAD 162 (321)
Q Consensus 108 ~r~~ss~lI~~~~~~~~~~iLID~G~~~~~--~l~-~-~l~~-~----~----------------~~~Id~V~iTH~H~D 162 (321)
..+.+++|++.. ..+..+-+|+|..... .+. + .+.. . . -..|..++|||.|.|
T Consensus 14 e~nls~~L~~~~--~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLD 91 (335)
T PF02112_consen 14 EGNLSAYLVRSI--GSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLD 91 (335)
T ss_pred CCCcceeeeeec--CcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchh
Confidence 345689999963 2456788999974211 111 1 0100 0 0 146889999999999
Q ss_pred hhcChHHHHHhhccc-cccccEEechhhHHHHHhhccccccccCC---CCCCCccceeeEEeC-CceEEE----------
Q 020812 163 AIGGLDDLRDWTNNV-QRHIPIYVAMRDFEVMKKTHYYLVDTSGI---IPGAAVSELQFNIID-EEPFTV---------- 227 (321)
Q Consensus 163 H~~Gl~~l~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~---------- 227 (321)
|+.||..-....... ..+.+||+.+.+.+.+++..-++.-+... ..+......+...+. ++....
T Consensus 92 Hi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~ 171 (335)
T PF02112_consen 92 HIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPLNNTTLSVIPN 171 (335)
T ss_pred hHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeeccccccccccc
Confidence 999985221111110 14678999999999998743222111100 001001111222221 111111
Q ss_pred ---CCEEEEEEEeccCCCc----eEEEEEEc------cEEEeCCCCCCC-------cchhhhc------CCCCEEEEccc
Q 020812 228 ---QDLKITPLPVWHGAGY----RSLGFRFG------NICYISDVSEIP-------EETYPFL------QDCEILIMDAL 281 (321)
Q Consensus 228 ---~~~~v~~~p~~H~~g~----~s~g~~i~------~i~ysGDt~~~~-------~~~~~~~------~~~dlli~ea~ 281 (321)
.+..++++|+.|.... .|.+|.++ .++|.||+++.. ..+|+.+ ++..-+++||.
T Consensus 172 ~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS 251 (335)
T PF02112_consen 172 EFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECS 251 (335)
T ss_pred cccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeC
Confidence 1366778999998752 27888885 899999997632 2334433 35788999999
Q ss_pred CCCC----CCCCCCCHHHHHHHHHHh-----------CC-eEEEEeccCCC
Q 020812 282 RPDR----SSSTHFGLPRVDKFLAYS-----------GN-QFTLSNMSLTI 316 (321)
Q Consensus 282 ~~~~----~~~~H~~~~~a~~~~~~~-----------~~-~~vltH~~~~~ 316 (321)
+++. .-.+|+++..+++.++.+ +. ++|++|+-..-
T Consensus 252 ~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~ 302 (335)
T PF02112_consen 252 YPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSL 302 (335)
T ss_pred CCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcc
Confidence 8764 248999997666554432 12 78999985543
No 39
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.33 E-value=4.3e-11 Score=108.25 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=86.4
Q ss_pred EEEEEecCCCCCceEEEecCCC-chHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHH
Q 020812 113 SILIRYPGPSGRRNILIDAGKF-FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (321)
Q Consensus 113 s~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (321)
+++|+ .++..+++|+|.. ....+..+|++.|+.+||.+++||.|.||+||+..+.+.+. --++|+......
T Consensus 56 a~li~----~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~----v~~~~i~~~~~~ 127 (293)
T COG2333 56 ATLIR----SEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK----VPELWIYAGSDS 127 (293)
T ss_pred EEEEe----eCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC----CCcEEEeCCCCc
Confidence 78899 4778999999982 33567888899999999999999999999999999987421 223444332221
Q ss_pred HHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEEEEec-cC---CCceEEEEEEc----cEEEeCCCCCCC
Q 020812 192 VMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HG---AGYRSLGFRFG----NICYISDVSEIP 263 (321)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-H~---~g~~s~g~~i~----~i~ysGDt~~~~ 263 (321)
..... ..+ . + ........++.+.+++..++.+.-. .. .+..|+.++++ +++++||...-.
T Consensus 128 ~~~~~---~~~-~----~----~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~ 195 (293)
T COG2333 128 TSTFV---LRD-A----G----IPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKG 195 (293)
T ss_pred cchhh---hhh-c----C----CceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchh
Confidence 10000 000 0 0 0011223467889999888865321 22 13357777776 999999997643
Q ss_pred c
Q 020812 264 E 264 (321)
Q Consensus 264 ~ 264 (321)
|
T Consensus 196 E 196 (293)
T COG2333 196 E 196 (293)
T ss_pred H
Confidence 3
No 40
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.26 E-value=6e-11 Score=109.99 Aligned_cols=125 Identities=21% Similarity=0.294 Sum_probs=95.3
Q ss_pred ccEEEEEecCCCCCceEEEecCCC-chHHHHhhccc-CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~~-~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
.+||||. +++.+|||++.. +...++..+++ .++++||+|+++|..+||.+.++.+++. .|+++|++++.
T Consensus 36 yNSYLI~-----~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~----~p~a~ii~s~~ 106 (388)
T COG0426 36 YNSYLIV-----GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL----APNAKIICSKL 106 (388)
T ss_pred eeeEEEe-----CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHh----CCCCEEEeeHH
Confidence 4799999 789999999864 55666655554 5678899999999999999999999875 56899999999
Q ss_pred hHHHHHhhccccccccCCCCCCCccceeeEEeC-CceEEECCEEEEEE--EeccCCCceEEEEEEc-cEEEeCCC
Q 020812 189 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPL--PVWHGAGYRSLGFRFG-NICYISDV 259 (321)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~--p~~H~~g~~s~g~~i~-~i~ysGDt 259 (321)
..+.+...+... . .+.+++ ++.+.+||-+++++ |..|+|+ .-+-|..+ +|+||+|.
T Consensus 107 ~~~~L~~~~~~~-------------~-~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd-~m~TYd~~~kILFS~D~ 166 (388)
T COG0426 107 AARFLKGFYHDP-------------E-WFKIVKTGDTLDLGGHTLKFIPAPFLHWPD-TMFTYDPEDKILFSCDA 166 (388)
T ss_pred HHHHHHHhcCCc-------------c-ceeecCCCCEeccCCcEEEEEeCCCCCCCC-ceeEeecCCcEEEcccc
Confidence 888887753211 0 144555 68999998666655 5569995 34455554 99999997
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=116.13 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=108.9
Q ss_pred cccEEEEEecCCCCCceEEEecCCCch---HHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEec
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKFFY---HSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~---~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (321)
+.+|.++++ ++++|++|||.-.. ...+.++...++..||.++|||+|.||++.++++.+.... ..++|++
T Consensus 26 GRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf---~grvfmt 98 (668)
T KOG1137|consen 26 GRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF---IGRVFMT 98 (668)
T ss_pred CceEEEEEe----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccc---cceeEEe
Confidence 457999996 88999999996321 1233445567788999999999999999999998875432 4567776
Q ss_pred hhhHHHHHhhccccccccC------CC-CCCCc-cceeeEEeC-CceEEECCEEEEEEEeccCCCceEEEEEEc----cE
Q 020812 187 MRDFEVMKKTHYYLVDTSG------II-PGAAV-SELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NI 253 (321)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~------~~-~~~~~-~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~----~i 253 (321)
..+....+-.......... .+ .+... .-.+++.++ -+..+++|++|.++-+.|.-| +..|.++ ++
T Consensus 99 h~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlg--acMf~veiagv~l 176 (668)
T KOG1137|consen 99 HPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLG--ACMFMVEIAGVRL 176 (668)
T ss_pred cchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhh--heeeeeeeceEEE
Confidence 6654433322211111110 01 01000 011333343 256788999999999999886 3556665 99
Q ss_pred EEeCCCCCCCcchhhh--c--CCCCEEEEcccCCCCCCCCC
Q 020812 254 CYISDVSEIPEETYPF--L--QDCEILIMDALRPDRSSSTH 290 (321)
Q Consensus 254 ~ysGDt~~~~~~~~~~--~--~~~dlli~ea~~~~~~~~~H 290 (321)
+|+||.....++-... + .+.|++|.|.++....+..|
T Consensus 177 LyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r 217 (668)
T KOG1137|consen 177 LYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPR 217 (668)
T ss_pred EeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCch
Confidence 9999986543321111 1 25899999999875433333
No 42
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=105.91 Aligned_cols=75 Identities=31% Similarity=0.426 Sum_probs=58.5
Q ss_pred ccccEEEEEecCCCCCceEEEecCCCchHHHHhhcccC--CCCCccEEEecCCchhhhcChHHHHHhhccccccccEEec
Q 020812 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY--GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (321)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~--~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (321)
+..-|+||+ .++++||+|+|... ..++.+++.+ ++.+||+|+|||.|+||++||..+.+.. .+.++||++
T Consensus 20 ~hGfS~LVE----~~~~riLFDtG~~~-~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~---~~~i~v~ah 91 (259)
T COG1237 20 EHGFSALVE----DEGTRILFDTGTDS-DVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEEN---NPGIPVYAH 91 (259)
T ss_pred cCceEEEEE----cCCeEEEEeCCCCc-HHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhcc---CCCceEEeC
Confidence 345699999 57799999999654 2344444444 4579999999999999999999887643 367899999
Q ss_pred hhhHH
Q 020812 187 MRDFE 191 (321)
Q Consensus 187 ~~~~~ 191 (321)
+....
T Consensus 92 p~af~ 96 (259)
T COG1237 92 PDAFK 96 (259)
T ss_pred hHHHh
Confidence 88876
No 43
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.06 E-value=1.5e-09 Score=95.78 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=75.9
Q ss_pred cccEEEEEecCCCCCceEEEecCCC-chHHHHhhccc---CCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEe
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA---YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYV 185 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~~---~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~ 185 (321)
.+.+|||. ++..++++|.+.- ....+...+.+ .+ .+|.+||.||.|+||+||+..|.+.. .+++.+|+
T Consensus 12 ~Ny~YLl~----~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~-~~l~~Il~THhH~DHsGGn~~i~~~~---~~~~~v~g 83 (265)
T KOG0813|consen 12 DNYMYLLG----DGDKTIDADLVDPAEPEYVIPSLKKLDDEN-RRLTAILTTHHHYDHSGGNEDIKREI---PYDIKVIG 83 (265)
T ss_pred CceEEEEe----cccceeeeeeecCcchHHHHHHHHhhhhcc-CceeEEEeccccccccCcHHHHHhhc---cCCcEEec
Confidence 46688888 3466666666542 22223222222 33 48999999999999999999998742 13677777
Q ss_pred ch-hhHHHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEEEEec-cCCCceEEEEEEc-----cEEEeCC
Q 020812 186 AM-RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG-----NICYISD 258 (321)
Q Consensus 186 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-H~~g~~s~g~~i~-----~i~ysGD 258 (321)
.. .... + +...+-+++.+.++|.+|+.+..+ |+.|| +.|.+. +.+|+||
T Consensus 84 ~~~~r~~-----------------~-----i~~~~~~~e~~~~~g~~v~~l~TPgHT~~h--i~~~~~~~~~e~~iFtGD 139 (265)
T KOG0813|consen 84 GADDRIP-----------------G-----ITRGLKDGETVTVGGLEVRCLHTPGHTAGH--ICYYVTESTGERAIFTGD 139 (265)
T ss_pred CChhcCc-----------------c-----ccccCCCCcEEEECCEEEEEEeCCCccCCc--EEEEeecCCCCCeEEeCC
Confidence 74 1111 1 111122357899999888865332 88865 666664 7999999
Q ss_pred CC
Q 020812 259 VS 260 (321)
Q Consensus 259 t~ 260 (321)
+.
T Consensus 140 tl 141 (265)
T KOG0813|consen 140 TL 141 (265)
T ss_pred ce
Confidence 94
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.03 E-value=9.4e-10 Score=95.06 Aligned_cols=191 Identities=16% Similarity=0.218 Sum_probs=104.8
Q ss_pred EEEEEecCCCCCceEEEecCCCchH-------------HHHhhcccCC--CCCccEEEecCCchhhhcCh-HHHHHhhc-
Q 020812 113 SILIRYPGPSGRRNILIDAGKFFYH-------------SALRWFPAYG--IRTIDAVIITHSHADAIGGL-DDLRDWTN- 175 (321)
Q Consensus 113 s~lI~~~~~~~~~~iLID~G~~~~~-------------~l~~~l~~~~--~~~Id~V~iTH~H~DH~~Gl-~~l~~~~~- 175 (321)
|.+|+ +.+-.||||+|..... ++.+..+++. .++.+.|.|||.|+||..-. +.+-+...
T Consensus 17 At~ve----t~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e 92 (304)
T COG2248 17 ATFVE----TKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGE 92 (304)
T ss_pred hheee----cCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhccc
Confidence 67899 5889999999965311 1111111111 25678899999999999752 11111100
Q ss_pred ---cccccccEEe-ch-hhHHHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEE-EEeccCCCceEEEEE
Q 020812 176 ---NVQRHIPIYV-AM-RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITP-LPVWHGAGYRSLGFR 249 (321)
Q Consensus 176 ---~~~~~~~v~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~p~~H~~g~~s~g~~ 249 (321)
.-..+..+.+ ++ ..+++-++...+.+-. .......++..-++..|++|+..|++ -|++|++...-+||+
T Consensus 93 ~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~-----~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyV 167 (304)
T COG2248 93 TAKEIYKGKLLLLKHPTENINRSQRRRAYRFLE-----SLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYV 167 (304)
T ss_pred chHHHhcCcEEEecCchhhhCHHHHHHHHHHHH-----HhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceE
Confidence 0011112222 11 2222222111111100 00011125555677899999999986 477898854567887
Q ss_pred Ec--------cEEEeCCCC-CCCcchhhhc--CCCCEEEEccc--CCCCCCCCCCCH----HHHHHHHHHhCCeEEEEec
Q 020812 250 FG--------NICYISDVS-EIPEETYPFL--QDCEILIMDAL--RPDRSSSTHFGL----PRVDKFLAYSGNQFTLSNM 312 (321)
Q Consensus 250 i~--------~i~ysGDt~-~~~~~~~~~~--~~~dlli~ea~--~~~~~~~~H~~~----~~a~~~~~~~~~~~vltH~ 312 (321)
+. +++|+.|+. +..++.++++ ++.|++|++.- |.-+-..+-.+. ....+++.+.++++|+-|.
T Consensus 168 l~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHH 247 (304)
T COG2248 168 LMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHH 247 (304)
T ss_pred EEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeeh
Confidence 74 999999996 4444455554 46999999873 221111222333 3444555566678888884
No 45
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-08 Score=88.50 Aligned_cols=165 Identities=20% Similarity=0.297 Sum_probs=106.4
Q ss_pred CCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeCC---ceE
Q 020812 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE---EPF 225 (321)
Q Consensus 149 ~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 225 (321)
..|+..+|||+|.||+.|+..--. ....+.+.+||+...+++.+++..-+|.-+.... ......++++.+++ ...
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp-~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt-~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSP-DDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLT-DSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhceeecCc-cccccCCceEEechhHHHHHHHHhhcccccCCcc-cccCceEEEEEeChhHeeee
Confidence 578999999999999999843211 1122456789999999999988644433222111 11122456777764 234
Q ss_pred EECCEEEEEEEeccCC--Cce--EEEEEEc------cEEEeCCCCCCC---c----chhhhc------CCCCEEEEcccC
Q 020812 226 TVQDLKITPLPVWHGA--GYR--SLGFRFG------NICYISDVSEIP---E----ETYPFL------QDCEILIMDALR 282 (321)
Q Consensus 226 ~~~~~~v~~~p~~H~~--g~~--s~g~~i~------~i~ysGDt~~~~---~----~~~~~~------~~~dlli~ea~~ 282 (321)
.+-.+++.++|+.|.. |.+ +..|.+. -++|.||+.+.. + .+|+.+ +...-+++||.+
T Consensus 189 t~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~ 268 (356)
T COG5212 189 TLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSY 268 (356)
T ss_pred eeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecC
Confidence 4446789999999976 333 3556664 689999997642 1 223322 236778889999
Q ss_pred CCCCC----CCCCCHHHHHHHHHHhC----------C-eEEEEeccCC
Q 020812 283 PDRSS----STHFGLPRVDKFLAYSG----------N-QFTLSNMSLT 315 (321)
Q Consensus 283 ~~~~~----~~H~~~~~a~~~~~~~~----------~-~~vltH~~~~ 315 (321)
++... .+|+++.-.+.-+..++ . .+++||+-..
T Consensus 269 P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~ 316 (356)
T COG5212 269 PNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSS 316 (356)
T ss_pred CCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCc
Confidence 87543 68999976655544332 2 6799997543
No 46
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.70 E-value=2.5e-07 Score=90.00 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=102.2
Q ss_pred ccEEEEEecCCCCCceEEEecCCCc--hHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFF--YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~--~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
.-|++|+. ++.+||||||... ..++...++.. +..||+|++||...=|+|||++..... .-+++||++-+
T Consensus 15 ~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~-i~~iDaILLShpd~~hlGaLpY~~~k~---gl~~~VYAT~P 86 (764)
T KOG1135|consen 15 PLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPV-IPTIDAILLSHPDILHLGALPYAVGKL---GLNAPVYATLP 86 (764)
T ss_pred cceEEEEE----cCeEEEEeCCCcchhccchhhhhhcc-cccccEEEecCCChHHhccchhhHhhC---CccceEEEecc
Confidence 34899996 7899999999863 33444433333 468999999999999999999887643 22589999988
Q ss_pred hHHHHHhhccccccc--c----CCCCCCCcc-ce-eeEEeC-CceEEE----CCEEEEEEEeccCCCceEEEEEEc----
Q 020812 189 DFEVMKKTHYYLVDT--S----GIIPGAAVS-EL-QFNIID-EEPFTV----QDLKITPLPVWHGAGYRSLGFRFG---- 251 (321)
Q Consensus 189 ~~~~l~~~~~~~~~~--~----~~~~~~~~~-~~-~~~~~~-~~~~~~----~~~~v~~~p~~H~~g~~s~g~~i~---- 251 (321)
+...-+-.....+.. . ..+.-.++. .+ .+..++ .+++.+ .|++|+++++.|+.| .+ -|+|.
T Consensus 87 V~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiG-Gs-IWkI~k~~E 164 (764)
T KOG1135|consen 87 VIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIG-GS-IWKISKVGE 164 (764)
T ss_pred hhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccC-ce-EEEEEecCc
Confidence 765422110000000 0 000000010 00 222333 244444 368999999999997 34 45552
Q ss_pred cEEEeCCCCCCCc-----chhhhcCCCCEEEEcccC
Q 020812 252 NICYISDVSEIPE-----ETYPFLQDCEILIMDALR 282 (321)
Q Consensus 252 ~i~ysGDt~~~~~-----~~~~~~~~~dlli~ea~~ 282 (321)
+|+|+=|..+--| ..++.+.++.+||.++..
T Consensus 165 ~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~ 200 (764)
T KOG1135|consen 165 DIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANH 200 (764)
T ss_pred eEEEEEecccchhcccCCccccccCCcceEEecccc
Confidence 9999999865433 235566789999999853
No 47
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=76.77 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=78.8
Q ss_pred ccEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhH
Q 020812 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (321)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (321)
+-+||+-.. ..++.++||+-.....+-.+.++++|+ ++-+-+-||.|+||+.|...|+... | ...
T Consensus 21 TytYll~d~--~~~~AviIDPV~et~~RD~qlikdLgl-~LiYa~NTH~HADHiTGtg~Lkt~~----p--------g~k 85 (237)
T KOG0814|consen 21 TYTYLLGDH--KTGKAVIIDPVLETVSRDAQLIKDLGL-DLIYALNTHVHADHITGTGLLKTLL----P--------GCK 85 (237)
T ss_pred eEEEEeeeC--CCCceEEecchhhcccchHHHHHhcCc-eeeeeecceeecccccccchHHHhc----c--------cHH
Confidence 346777642 467899999987654443444456787 6779999999999999988776531 1 222
Q ss_pred HHHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEE--EEEeccCCCceEEEEEEc--cEEEeCCC
Q 020812 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKIT--PLPVWHGAGYRSLGFRFG--NICYISDV 259 (321)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~p~~H~~g~~s~g~~i~--~i~ysGDt 259 (321)
..+.+. .|. ..+.++-+++.+++|++.++ +.|+ |++| ++-|+.. +.+|+||+
T Consensus 86 SVis~~-----------SGa---kAD~~l~~Gd~i~~G~~~le~ratPG-HT~G--C~TyV~~d~~~aFTGDa 141 (237)
T KOG0814|consen 86 SVISSA-----------SGA---KADLHLEDGDIIEIGGLKLEVRATPG-HTNG--CVTYVEHDLRMAFTGDA 141 (237)
T ss_pred HHhhhc-----------ccc---ccccccCCCCEEEEccEEEEEecCCC-CCCc--eEEEEecCcceeeecce
Confidence 222221 111 12444556789999986655 5666 8884 7888886 99999998
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.58 E-value=3.9e-07 Score=86.75 Aligned_cols=135 Identities=23% Similarity=0.326 Sum_probs=90.3
Q ss_pred ceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHHHhhcccccccc
Q 020812 125 RNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTS 204 (321)
Q Consensus 125 ~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 204 (321)
..+.+++|.-+.-...++ .-.....+-|+||+|.||..||..- |. .-++|++.-+...+.......
T Consensus 90 ~~~~~~p~~~f~VD~f~~---~~~~~~s~yFLsHFHSDHy~GL~~s--W~-----~p~lYCS~ita~Lv~~~~~v~---- 155 (481)
T KOG1361|consen 90 HVIKVLPGGEFSVDAFRY---GHIEGCSAYFLSHFHSDHYIGLTKS--WS-----HPPLYCSPITARLVPLKVSVT---- 155 (481)
T ss_pred cceeecCCCcEEEehhhc---CCccccceeeeeccccccccccccc--cc-----CCcccccccchhhhhhhcccC----
Confidence 467777765432222221 1124788999999999999998543 21 234999988877765543211
Q ss_pred CCCCCCCccceeeEEeC-CceEEECCEEEEEEEeccCCCceEEEEEEc-----cEEEeCCCCCCCcchh---hhc-CCCC
Q 020812 205 GIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETY---PFL-QDCE 274 (321)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~-----~i~ysGDt~~~~~~~~---~~~-~~~d 274 (321)
.-.++.++ ++.+.+.++.++.++++|++|. +.|.++ .++++||.+...+... ... +.++
T Consensus 156 ---------~~~i~~l~l~~~~~i~~~~vt~ldAnHCPGa--~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~ 224 (481)
T KOG1361|consen 156 ---------KQSIQALDLNQPLEIPGIQVTLLDANHCPGA--VMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTID 224 (481)
T ss_pred ---------hhhceeecCCCceeecceEEEEeccccCCCc--eEEEeecCCCceEEecCCcccChhhhhChHHhcCCccc
Confidence 01223344 5688889999999999999974 444443 8999999988644222 223 5699
Q ss_pred EEEEcccCCC
Q 020812 275 ILIMDALRPD 284 (321)
Q Consensus 275 lli~ea~~~~ 284 (321)
.+.+|+|+-+
T Consensus 225 ~lyLDtTycn 234 (481)
T KOG1361|consen 225 ILYLDTTYCN 234 (481)
T ss_pred eEEEeecccC
Confidence 9999999865
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=98.40 E-value=1.5e-06 Score=72.10 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=67.6
Q ss_pred cEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHH
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (321)
+|++.. .++.+||||+-+-.. ...++|...| .+++|++||. ||+.....+.+.+ .++||+|..+.+
T Consensus 24 ng~~~~----~p~GnilIDP~~ls~-~~~~~l~a~g--gv~~IvLTn~--dHvR~A~~ya~~~-----~a~i~~p~~d~~ 89 (199)
T PF14597_consen 24 NGHAWR----RPEGNILIDPPPLSA-HDWKHLDALG--GVAWIVLTNR--DHVRAAEDYAEQT-----GAKIYGPAADAA 89 (199)
T ss_dssp EEEEE------TT--EEES-----H-HHHHHHHHTT----SEEE-SSG--GG-TTHHHHHHHS-------EEEEEGGGCC
T ss_pred eeEEEE----cCCCCEEecCccccH-HHHHHHHhcC--CceEEEEeCC--hhHhHHHHHHHHh-----CCeeeccHHHHh
Confidence 345555 288999999987553 3444445554 5899999986 9999998888754 689999988753
Q ss_pred HHHhhccccccccCCCCCCCccceeeEEeCCceEEECCEEEEEEEeccCCCceEEEEEEc-cEEEeCCCC
Q 020812 192 VMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-NICYISDVS 260 (321)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~H~~g~~s~g~~i~-~i~ysGDt~ 260 (321)
.+ ++. .+...-++ ...++|+++..+++.|++| .+++.++ +++++||..
T Consensus 90 ~~----p~~--------------~D~~l~dg-e~i~~g~~vi~l~G~ktpG--E~ALlled~vLi~GDl~ 138 (199)
T PF14597_consen 90 QF----PLA--------------CDRWLADG-EEIVPGLWVIHLPGSKTPG--ELALLLEDRVLITGDLL 138 (199)
T ss_dssp C-----SS----------------SEEE-TT--BSSTTEEEEEE-SSSSTT--EEEEEETTTEEEESSSE
T ss_pred hC----CCC--------------CccccccC-CCccCceEEEEcCCCCCCc--eeEEEeccceEEeccee
Confidence 21 110 01122233 3566899999999999997 4777776 999999974
No 50
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.39 E-value=5.4e-06 Score=72.05 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=107.8
Q ss_pred cccEEEEEecCCCCCceEEEecCCCch--------HHHHhh-cccCCCCCccEEEecCCchhhhcChHHHHHhhcccccc
Q 020812 110 LNTSILIRYPGPSGRRNILIDAGKFFY--------HSALRW-FPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRH 180 (321)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~--------~~l~~~-l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~ 180 (321)
+++|.++.. ++-.++-|+=...+ .+.... .....+.++|.+++||.|+||.. +..+..+. ...+.
T Consensus 87 g~a~~~~~~----~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld-~~~~~~~~-~~~~~ 160 (343)
T KOG3798|consen 87 GHATVLVDL----EGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLD-ADAVKKIT-DRNPQ 160 (343)
T ss_pred cceeEEEec----cCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccc-hHHHHhhh-ccCcc
Confidence 567888885 66777777643211 111100 01134578999999999999985 55555543 22333
Q ss_pred ccEEechhhHHHHHhhccccccccCCCCCCCccceeeEEeCC--ceEEECC--EEEEEEEeccCCCce------E--EEE
Q 020812 181 IPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE--EPFTVQD--LKITPLPVWHGAGYR------S--LGF 248 (321)
Q Consensus 181 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~v~~~p~~H~~g~~------s--~g~ 248 (321)
+ -+++...+.++... |... ....... ..+.-++ ++|..+|+.|..+.. . .++
T Consensus 161 ~-wfvp~g~k~~m~~~------------gc~~---v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw 224 (343)
T KOG3798|consen 161 I-WFVPLGMKKWMEGD------------GSST---VTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSW 224 (343)
T ss_pred c-eeehhhhhheecCC------------CCCc---eeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeee
Confidence 3 55665554443321 1110 1111111 2233333 667788999976311 1 123
Q ss_pred EE-c---cEEEeCCCCCCCcchhhh---cCCCCEEEEcccCCCC---CCCCCCCHHHHHHHHHHhCC-eEEEEe
Q 020812 249 RF-G---NICYISDVSEIPEETYPF---LQDCEILIMDALRPDR---SSSTHFGLPRVDKFLAYSGN-QFTLSN 311 (321)
Q Consensus 249 ~i-~---~i~ysGDt~~~~~~~~~~---~~~~dlli~ea~~~~~---~~~~H~~~~~a~~~~~~~~~-~~vltH 311 (321)
.+ . +++|.|||++|+.++.+. +..+|+..+.+..... ....|.+++||.++-+.+.+ +.+-+|
T Consensus 225 ~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~~HInPeEav~Ihkdv~arns~gIH 298 (343)
T KOG3798|consen 225 AVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIH 298 (343)
T ss_pred EEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhcccccCCHHHHHHHHHHHhhhcceeEe
Confidence 33 2 899999999998655543 3348988888864432 35789999999999999997 666666
No 51
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.52 E-value=0.00023 Score=49.17 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCCceEEE-ecCCCchHHHHhhcccCCCCCccEEEecCCc-hhhhcC
Q 020812 112 TSILIRYPGPSGRRNILI-DAGKFFYHSALRWFPAYGIRTIDAVIITHSH-ADAIGG 166 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLI-D~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H-~DH~~G 166 (321)
+|++|.. +++++|| +||+|+...+.+ .+..+.+++.||+|+.. +|++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEGtQR~~~e--~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEGTQRACNE--HKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcHHHHHHHH--cCCCccccceEEECCCCcccccCC
Confidence 6899995 6799999 999998665555 36778999999999999 999987
No 52
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.23 E-value=0.00044 Score=65.54 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=53.6
Q ss_pred cEEEEEecCCCCCceEEEecCCC--chHHHHhhc-ccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechh
Q 020812 112 TSILIRYPGPSGRRNILIDAGKF--FYHSALRWF-PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~--~~~~l~~~l-~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (321)
+-.+|+ .+...|+||+=.. +....++.+ +..+-..|.+|+.||.|.||.||...+.........+++|++|++
T Consensus 127 NITfve----Gdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 127 NITFVE----GDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred ceEEEc----CCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 345677 5778999998654 222222221 235556799999999999999999888654333345789999998
Q ss_pred hHHH
Q 020812 189 DFEV 192 (321)
Q Consensus 189 ~~~~ 192 (321)
.++.
T Consensus 203 Fme~ 206 (655)
T COG2015 203 FMEE 206 (655)
T ss_pred HHHH
Confidence 7654
No 53
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.0048 Score=55.25 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=36.8
Q ss_pred EEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHH
Q 020812 113 SILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDL 170 (321)
Q Consensus 113 s~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l 170 (321)
..++. +++..+++|.|.+. +.+ +..-+++|+.|++||.|.+|.+++..+
T Consensus 97 ~tl~~----d~~~v~v~~~gls~---lak--~~vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 97 ITLVV----DGGDVVVVDTGLSV---LAK--EGVTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred cceee----cCCceEEEecCCch---hhh--cCcChhhcceeEEeccCcccccccccc
Confidence 44555 57889999999882 222 134458999999999999999988654
No 54
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=83.65 E-value=0.86 Score=45.87 Aligned_cols=52 Identities=29% Similarity=0.499 Sum_probs=38.9
Q ss_pred cEEEEEecCCCCCceEEEecCCCc---hHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHH
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFF---YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD 172 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~---~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~ 172 (321)
.+.|... ++.+||+|.|..- +=.+.++ +++||+|++||.-.|...|+..|++
T Consensus 49 daALFav----nGf~iLv~GgserKS~fwklVrH-----ldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 49 DAALFAV----NGFNILVNGGSERKSCFWKLVRH-----LDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceeEee----cceEEeecCCcccccchHHHHHH-----HhhhhhhhhcccccCccccchHHHH
Confidence 3556664 7899999988752 2234443 4689999999999999999988765
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=77.10 E-value=3.9 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHhCC-eEEEEec
Q 020812 288 STHFGLPRVDKFLAYSGN-QFTLSNM 312 (321)
Q Consensus 288 ~~H~~~~~a~~~~~~~~~-~~vltH~ 312 (321)
.+|.+.++..++++.+++ +++++|=
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 689999999999999998 9999983
No 56
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=40.18 E-value=1.1e+02 Score=30.64 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=53.1
Q ss_pred cEEEEEecCCCCCceEEEecCCCchHH---H-HhhcccCCC-----CCccEEEecCCchhhhcChHHHHHhhc--ccccc
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFFYHS---A-LRWFPAYGI-----RTIDAVIITHSHADAIGGLDDLRDWTN--NVQRH 180 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~---l-~~~l~~~~~-----~~Id~V~iTH~H~DH~~Gl~~l~~~~~--~~~~~ 180 (321)
+=++|+. .+..|+|+|.-.+.. + .+.+...++ +.+-++.++|.|.||.+-+..+....- ..+--
T Consensus 165 cMf~vei-----agv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L 239 (668)
T KOG1137|consen 165 CMFMVEI-----AGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVL 239 (668)
T ss_pred eeeeeee-----ceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceE
Confidence 3567774 467889999765322 1 111122222 566788999999999999988876532 11224
Q ss_pred ccEEechhhHHHHHhhcccc
Q 020812 181 IPIYVAMRDFEVMKKTHYYL 200 (321)
Q Consensus 181 ~~v~~~~~~~~~l~~~~~~~ 200 (321)
+||++.....+.+.....+|
T Consensus 240 ~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 240 IPVFALGRAQELLLILDEYW 259 (668)
T ss_pred eeeeecchHHHHHHHHHHHh
Confidence 78898877777665544444
No 57
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=39.42 E-value=1e+02 Score=30.43 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=77.7
Q ss_pred ceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhhHHHH----Hhh----
Q 020812 125 RNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVM----KKT---- 196 (321)
Q Consensus 125 ~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l----~~~---- 196 (321)
..+.+|..+.+....... .+...||.|+||-.|. ..||+.+-+-. .-..+||+++.+.+.- ++.
T Consensus 74 ~rvfvesppe~~l~~t~l---ld~stiDvILISNy~~--mlgLPfiTent---GF~gkiY~TE~t~qiGrllMEelv~fi 145 (653)
T KOG1138|consen 74 GRVFVESPPEFTLPATHL---LDASTIDVILISNYMG--MLGLPFITENT---GFFGKIYATEPTAQIGRLLMEELVSFI 145 (653)
T ss_pred CceEEcCCchhccchhhh---hcccceeEEEEcchhh--hcccceeecCC---CceeEEEEechHHHHHHHHHHHHHHHH
Confidence 356667665432222222 3457899999999874 56777776532 2257899998875431 111
Q ss_pred --c------cccccc--cCCC---------CCCCccce----------eeEEeC-CceEEE-CCEEEEEEEeccCCCceE
Q 020812 197 --H------YYLVDT--SGII---------PGAAVSEL----------QFNIID-EEPFTV-QDLKITPLPVWHGAGYRS 245 (321)
Q Consensus 197 --~------~~~~~~--~~~~---------~~~~~~~~----------~~~~~~-~~~~~~-~~~~v~~~p~~H~~g~~s 245 (321)
+ ..|.+. .... .+.+..-. ++..+. .+.+.+ |-+.++++...|+.| +
T Consensus 146 er~p~~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lG--S 223 (653)
T KOG1138|consen 146 ERFPKASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLG--S 223 (653)
T ss_pred HhccccccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEecccccccc--c
Confidence 1 112111 0000 01000000 111111 133444 457888888888886 3
Q ss_pred EEEEEc----cEEEeCCCCCCCc--ch--hhhcCCCCEEEEcc
Q 020812 246 LGFRFG----NICYISDVSEIPE--ET--YPFLQDCEILIMDA 280 (321)
Q Consensus 246 ~g~~i~----~i~ysGDt~~~~~--~~--~~~~~~~dlli~ea 280 (321)
.-|.|. ++.|..|.....- +. ..-++.+|+||.-.
T Consensus 224 snW~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~ 266 (653)
T KOG1138|consen 224 SNWLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTG 266 (653)
T ss_pred cceEEecCCcceEEEecCcccccCCccccccccccccEEEEec
Confidence 445553 8999888754321 11 23467899998765
No 58
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=24.46 E-value=42 Score=28.46 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=28.7
Q ss_pred cEEEEEecCCCCCceEEEecCCCchHHHHhhcccCCCCCccEEEecCCchhhhcChHHHHH
Q 020812 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD 172 (321)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~ 172 (321)
.|++|+. +||+|..+.. ..+.|++.|..+| +++.||.-+- ++....++
T Consensus 85 ~~IIvDD---------iIdtg~Tl~~-aA~~Lk~~GA~~V-~~~aTHgvfs--~~A~~~l~ 132 (184)
T PF14572_consen 85 ICIIVDD---------IIDTGGTLIK-AAELLKERGAKKV-YACATHGVFS--GDAPERLE 132 (184)
T ss_dssp EEEEEEE---------EESSTHHHHH-HHHHHHHTTESEE-EEEEEEE-----TTHHHHHH
T ss_pred eEeeecc---------cccchHHHHH-HHHHHHHcCCCEE-EEEEeCcccC--chHHHHHh
Confidence 4677762 6788876533 3344566787777 7999998874 34444433
No 59
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=21.22 E-value=2.8e+02 Score=25.35 Aligned_cols=69 Identities=4% Similarity=-0.085 Sum_probs=45.6
Q ss_pred EEEEEecCCCCCceEEEecCCCchHHHHhhcccC---CCCCccEEEecCCchhhhcChHHHHHhhccccccccEEechhh
Q 020812 113 SILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY---GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189 (321)
Q Consensus 113 s~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~---~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~ 189 (321)
..+|+. .++..++..+-.-+ ..+.+.++++ + ..|++|+.--...-|..-+..+.+. +|++.||++++.
T Consensus 22 MTVVrL---~~G~L~VhSPvapT-~el~~~l~~L~~~~-G~VkyIVaPn~~lEH~lfl~~w~~a----fP~A~v~~~Pg~ 92 (285)
T PF14234_consen 22 MTVVRL---SDGGLWVHSPVAPT-PELKAELDELEAQH-GPVKYIVAPNKGLEHHLFLGPWARA----FPDAKVWAPPGQ 92 (285)
T ss_pred EEEEEE---CCCCEEEECCCCCC-HHHHHHHHHHhccC-CceeEEEcCCcchhHHHhHHHHHHH----CCCCEEEeCCCc
Confidence 567886 35566666665543 3344444443 2 3799999976655687777776665 689999999875
Q ss_pred H
Q 020812 190 F 190 (321)
Q Consensus 190 ~ 190 (321)
.
T Consensus 93 ~ 93 (285)
T PF14234_consen 93 W 93 (285)
T ss_pred c
Confidence 4
Done!