BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020813
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 246
++HP+A +G +VGP+C +G ++G+ C + S
Sbjct: 15 VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPS 49
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-IGRHCRI 254
+IHPSA V P+ ++G+G +G C++ SV +G C++
Sbjct: 9 LIHPSA------VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKL 46
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 206 FSAQNNIIHP-SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXX 264
F + + H E+ + + + LG ++G C +K SVIG C I
Sbjct: 260 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDAN 319
Query: 265 XXXXXTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302
TIG ++ G+ + A + V +K ++G+G
Sbjct: 320 LAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKG 358
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 206 FSAQNNIIHP-SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXX 264
F + + H E+ + + + LG ++G C +K SVIG C I
Sbjct: 35 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDAN 94
Query: 265 XXXXXTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302
TIG ++ G+ + A + V +K ++G+G
Sbjct: 95 LAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKG 133
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRSVIGRHCRIGSXXXXXXX 263
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 284 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT----------------- 326
Query: 264 XXXXXXTIGDGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
+IGDG ++ G+ + ++ +L V +K+ +G G
Sbjct: 327 -HGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG 371
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 206 FSAQNNIIHP-SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXX 264
F + + H E+ + + + LG ++G C +K SVIG C I
Sbjct: 29 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDAN 88
Query: 265 XXXXXTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302
TIG ++ G+ + A + V +K ++G+G
Sbjct: 89 LAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKG 127
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRSVIGRHCRIGSXXXXXXX 263
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 288 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT----------------- 330
Query: 264 XXXXXXTIGDGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
+IGDG ++ G+ + ++ +L V +K+ +G G
Sbjct: 331 -HGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG 375
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRSVIGRHCRIGSXXXXXXX 263
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 282 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT----------------- 324
Query: 264 XXXXXXTIGDGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
+IGDG ++ G+ + ++ +L V +K+ +G G
Sbjct: 325 -HGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG 369
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 30/106 (28%)
Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRSVIGRHCRIGSXXXXXXX 263
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 290 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT----------------- 332
Query: 264 XXXXXXTIGDGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
+IGDG ++ G+ + ++ +L V +K+ +G G
Sbjct: 333 -HGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG 377
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 202 SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 255
S ++ II PSA + S +GP+C++G +G + V+G RIG
Sbjct: 5 SNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIG 59
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 202 SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIG 255
S ++ II PSA + S +GP+C++G +G + V+G RIG
Sbjct: 34 SNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIG 88
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 255
II P A+L VGP+ ++G +G + ++ SVI H IG
Sbjct: 30 IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIG 74
>pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
Hypothetical Protein Bab28848
pdb|2RS6|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Rna
Helicase A
Length = 99
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 60 LRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVR-SQLKSE 114
+RAVG + + + + + FN + + ++KD + +D + YLVR +++KSE
Sbjct: 27 IRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSE 82
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIG 255
F I+ A +G+ +GP C++G ++G+ +K V+ H +IG
Sbjct: 7 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIG 57
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIG 255
F I+ A +G+ +GP C++G ++G+ +K V+ H +IG
Sbjct: 9 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIG 59
>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|D Chain D, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|E Chain E, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|F Chain F, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E79|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
Length = 357
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 19/94 (20%)
Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIG 272
IHPSA + +G + ++GE +GD +VI H ++ +G
Sbjct: 111 IHPSAVISETAYIGHYVVIGENCVVGDN-----TVIQSHTKLDDNVE-----------VG 154
Query: 273 DGCSIQGSV-ICSNAQLQERVALKDCQV--GQGY 303
C I V I +++L++RV + V G+G+
Sbjct: 155 KDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGF 188
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 210 NNIIHPSAELGSKTTVGPHCML-----GEGSQMGDKCSVKRSVIGRHCRIGSXXXXXXXX 264
N II + +LG + +G C+L G ++ ++ S++G IG
Sbjct: 277 NVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGA 336
Query: 265 XXXXXT-IGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG---CEYKG 313
T +G+ I+ S + +++ + D ++G + AG C Y G
Sbjct: 337 ELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDG 389
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 187 FMDINR-DVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
+D +R D+ GE H G + + N+I + H +LG+ ++G C +K
Sbjct: 254 LLDPSRFDLRGELTH--GRDITIDTNVI-----------IEGHVILGDRVRIGTGCVLKN 300
Query: 246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302
VIG I T+G ++ G+ + A + V +K ++G+G
Sbjct: 301 CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG 358
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 194 VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR 253
VIG+ + +S Y + A L + TVGP L G+++ + V V + R
Sbjct: 302 VIGDDSEISPYT-------VLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKAR 354
Query: 254 IGSXXXXXXXXXXXXXTIGDGCSI-QGSVICS 284
+G IG G +I G++ C+
Sbjct: 355 LGKGSKAGHLSYLGDAEIGAGVNIGAGTITCN 386
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 187 FMDINR-DVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
+D +R D+ GE H G + + N+I + H +LG+ ++G C +K
Sbjct: 257 LLDPSRFDLRGELTH--GRDITIDTNVI-----------IEGHVILGDRVRIGTGCVLKN 303
Query: 246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302
VIG I T+G ++ G+ + A + V +K ++G+G
Sbjct: 304 CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG 361
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 194 VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR 253
VIG+ + +S Y + A L + TVGP L G+++ + V V + R
Sbjct: 305 VIGDDSEISPYT-------VLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKAR 357
Query: 254 IGSXXXXXXXXXXXXXTIGDGCSI-QGSVICS 284
+G IG G +I G++ C+
Sbjct: 358 LGKGSKAGHLSYLGDAEIGAGVNIGAGTITCN 389
>pdb|1J2Z|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine
Acyltransferase
Length = 270
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV 247
A+ II P AE+ +G C++G+G ++ + + +V
Sbjct: 5 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNV 44
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 206 FSAQNNIIH-PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI 254
F + + H E+ + + + LG ++G C +K SVIG C I
Sbjct: 260 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEI 309
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG 255
A + +I +A+LG+ ++G + ++ G ++GD +IG C +G
Sbjct: 101 APSAVIDATAKLGNNVSIGANAVIESGVELGDNV-----IIGAGCFVG 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,728,061
Number of Sequences: 62578
Number of extensions: 332445
Number of successful extensions: 659
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 48
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)