Query 020813
Match_columns 321
No_of_seqs 284 out of 2750
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1462 Translation initiation 100.0 3.9E-42 8.4E-47 311.3 21.0 273 11-321 151-427 (433)
2 COG0448 GlgC ADP-glucose pyrop 100.0 3.6E-34 7.8E-39 263.6 15.8 226 28-314 128-390 (393)
3 KOG1461 Translation initiation 100.0 1.8E-31 4E-36 254.7 18.1 238 25-316 174-422 (673)
4 KOG1322 GDP-mannose pyrophosph 99.9 6.9E-28 1.5E-32 215.0 10.1 210 28-312 121-350 (371)
5 PRK02862 glgC glucose-1-phosph 99.9 6.8E-27 1.5E-31 225.8 16.3 227 28-315 125-427 (429)
6 PRK05293 glgC glucose-1-phosph 99.9 1.6E-26 3.4E-31 220.2 17.7 226 28-312 126-380 (380)
7 PLN02241 glucose-1-phosphate a 99.9 1.4E-25 3.1E-30 217.1 17.4 227 28-314 131-427 (436)
8 PRK00844 glgC glucose-1-phosph 99.9 1.9E-25 4.1E-30 214.5 17.8 212 28-296 126-382 (407)
9 PRK00725 glgC glucose-1-phosph 99.9 2.2E-24 4.7E-29 208.2 16.4 211 28-295 138-393 (425)
10 COG1208 GCD1 Nucleoside-diphos 99.9 2.8E-24 6E-29 202.5 16.1 197 28-290 108-324 (358)
11 TIGR02091 glgC glucose-1-phosp 99.9 1.3E-23 2.8E-28 198.7 17.0 208 29-312 121-360 (361)
12 TIGR02092 glgD glucose-1-phosp 99.9 1.1E-22 2.4E-27 193.1 15.6 210 28-314 123-356 (369)
13 TIGR01208 rmlA_long glucose-1- 99.9 1.7E-21 3.7E-26 183.8 16.6 213 30-305 109-351 (353)
14 KOG1460 GDP-mannose pyrophosph 99.9 3.1E-22 6.6E-27 176.5 9.0 235 35-306 123-398 (407)
15 PRK14355 glmU bifunctional N-a 99.9 8.6E-21 1.9E-25 185.1 18.6 170 70-295 168-354 (459)
16 PRK14356 glmU bifunctional N-a 99.8 4.4E-20 9.6E-25 179.9 17.7 182 70-305 169-365 (456)
17 PRK14359 glmU bifunctional N-a 99.8 8.8E-20 1.9E-24 176.5 18.9 169 70-294 160-357 (430)
18 PRK14352 glmU bifunctional N-a 99.8 8.1E-20 1.8E-24 179.2 18.0 185 70-311 171-389 (482)
19 PRK09451 glmU bifunctional N-a 99.8 4.6E-20 9.9E-25 179.8 15.8 172 70-295 165-351 (456)
20 PRK14353 glmU bifunctional N-a 99.8 2.1E-19 4.5E-24 174.7 20.1 189 71-314 170-398 (446)
21 TIGR01173 glmU UDP-N-acetylglu 99.8 1.2E-19 2.6E-24 176.4 18.4 176 71-302 162-354 (451)
22 PRK14358 glmU bifunctional N-a 99.8 8.5E-19 1.8E-23 171.8 14.9 145 166-312 216-390 (481)
23 COG1207 GlmU N-acetylglucosami 99.8 9.1E-18 2E-22 155.5 13.4 194 72-319 170-389 (460)
24 PRK14354 glmU bifunctional N-a 99.7 6.3E-17 1.4E-21 157.8 18.2 135 166-303 211-358 (458)
25 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 4E-17 8.8E-22 144.6 12.6 137 174-313 45-195 (231)
26 PRK14357 glmU bifunctional N-a 99.7 1.9E-16 4.2E-21 154.0 17.6 20 71-90 160-179 (448)
27 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.1E-15 2.4E-20 128.7 15.4 86 209-294 16-102 (163)
28 PRK14360 glmU bifunctional N-a 99.7 4.3E-15 9.4E-20 144.6 17.5 101 210-311 262-380 (450)
29 cd05636 LbH_G1P_TT_C_like Puta 99.6 3.9E-15 8.4E-20 125.4 14.7 106 206-311 31-162 (163)
30 TIGR02287 PaaY phenylacetic ac 99.6 4.1E-15 8.8E-20 128.1 13.6 103 212-314 10-122 (192)
31 cd04745 LbH_paaY_like paaY-lik 99.6 6.1E-15 1.3E-19 123.2 14.1 102 214-315 4-115 (155)
32 cd04652 LbH_eIF2B_gamma_C eIF- 99.6 3E-15 6.4E-20 111.2 10.6 79 231-309 2-80 (81)
33 PRK13627 carnitine operon prot 99.6 1.1E-14 2.3E-19 125.9 13.9 105 211-315 11-125 (196)
34 COG0663 PaaY Carbonic anhydras 99.6 1.8E-14 3.8E-19 120.0 11.9 106 208-315 15-126 (176)
35 cd04646 LbH_Dynactin_6 Dynacti 99.6 4.2E-14 9.1E-19 119.1 14.0 101 214-314 3-119 (164)
36 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 4.3E-14 9.2E-19 127.5 14.9 74 245-318 77-160 (254)
37 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 4.1E-14 8.8E-19 127.6 14.5 68 246-313 103-173 (254)
38 PLN02296 carbonate dehydratase 99.6 4.5E-14 9.8E-19 127.4 14.0 103 213-315 55-173 (269)
39 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 1E-13 2.2E-18 129.0 16.4 77 218-294 111-210 (324)
40 TIGR01852 lipid_A_lpxA acyl-[a 99.6 7.5E-14 1.6E-18 125.9 14.9 107 210-316 28-157 (254)
41 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 5.5E-14 1.2E-18 127.7 13.8 112 209-320 122-266 (338)
42 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 8.4E-14 1.8E-18 120.4 14.3 92 210-301 15-107 (193)
43 cd03356 LbH_G1P_AT_C_like Left 99.5 5.7E-14 1.2E-18 103.6 10.4 76 231-306 2-78 (79)
44 PLN02472 uncharacterized prote 99.5 1.2E-13 2.6E-18 123.1 14.4 102 210-313 65-178 (246)
45 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 8.6E-14 1.9E-18 126.5 13.6 106 207-312 102-240 (338)
46 cd04645 LbH_gamma_CA_like Gamm 99.5 1.1E-13 2.3E-18 115.3 13.1 101 215-315 4-114 (153)
47 TIGR01852 lipid_A_lpxA acyl-[a 99.5 2.5E-13 5.4E-18 122.5 16.0 102 213-314 13-137 (254)
48 cd04650 LbH_FBP Ferripyochelin 99.5 1.6E-13 3.4E-18 114.5 13.7 99 215-313 5-113 (154)
49 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 2.9E-13 6.4E-18 127.2 16.9 32 246-277 149-181 (343)
50 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 1.1E-13 2.3E-18 102.7 10.5 79 213-292 2-80 (81)
51 cd00710 LbH_gamma_CA Gamma car 99.5 2.8E-13 6E-18 114.5 14.3 86 230-315 44-135 (167)
52 cd04651 LbH_G1P_AT_C Glucose-1 99.5 1.1E-13 2.4E-18 107.7 11.0 76 218-295 3-78 (104)
53 PRK05289 UDP-N-acetylglucosami 99.5 2E-13 4.3E-18 123.6 14.0 16 263-278 81-96 (262)
54 TIGR03308 phn_thr-fam phosphon 99.5 3.5E-13 7.5E-18 117.4 13.8 100 214-314 6-144 (204)
55 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 3.2E-13 7E-18 125.6 14.1 71 224-294 135-232 (324)
56 cd00710 LbH_gamma_CA Gamma car 99.5 6E-13 1.3E-17 112.5 14.5 101 213-313 5-116 (167)
57 cd05824 LbH_M1P_guanylylT_C Ma 99.5 2.7E-13 5.9E-18 100.3 10.9 77 213-289 2-79 (80)
58 cd05787 LbH_eIF2B_epsilon eIF- 99.5 2.2E-13 4.9E-18 100.1 10.1 76 231-306 2-78 (79)
59 PRK14353 glmU bifunctional N-a 99.5 3.7E-13 8.1E-18 130.9 14.4 33 280-312 381-414 (446)
60 PRK05289 UDP-N-acetylglucosami 99.5 4.8E-13 1E-17 121.1 13.4 84 211-294 33-138 (262)
61 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 6.2E-13 1.3E-17 125.0 14.0 16 71-86 51-66 (343)
62 cd03356 LbH_G1P_AT_C_like Left 99.5 5.5E-13 1.2E-17 98.3 10.5 77 213-290 2-79 (79)
63 PRK12461 UDP-N-acetylglucosami 99.5 1.5E-12 3.3E-17 117.1 14.6 14 247-260 79-92 (255)
64 TIGR03570 NeuD_NnaD sugar O-ac 99.4 4.1E-12 8.9E-17 109.8 16.2 127 175-314 60-189 (201)
65 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 1.8E-12 3.8E-17 112.1 13.6 57 230-286 52-109 (193)
66 cd05824 LbH_M1P_guanylylT_C Ma 99.4 1.5E-12 3.2E-17 96.3 11.0 76 226-306 3-79 (80)
67 cd04651 LbH_G1P_AT_C Glucose-1 99.4 8.6E-13 1.9E-17 102.7 10.2 80 235-315 2-81 (104)
68 cd03350 LbH_THP_succinylT 2,3, 99.4 4.2E-12 9.2E-17 104.0 14.2 33 280-312 76-109 (139)
69 cd04745 LbH_paaY_like paaY-lik 99.4 5.1E-12 1.1E-16 105.4 15.0 96 210-305 18-123 (155)
70 cd04646 LbH_Dynactin_6 Dynacti 99.4 4.5E-12 9.7E-17 106.8 14.5 100 210-314 17-131 (164)
71 PRK12461 UDP-N-acetylglucosami 99.4 2.7E-12 5.8E-17 115.5 14.0 50 263-312 120-171 (255)
72 cd03360 LbH_AT_putative Putati 99.4 7.3E-12 1.6E-16 107.3 16.2 99 211-314 85-186 (197)
73 cd03358 LbH_WxcM_N_like WcxM-l 99.4 2.1E-12 4.4E-17 102.6 11.6 99 214-313 2-102 (119)
74 PRK14360 glmU bifunctional N-a 99.4 6E-13 1.3E-17 129.6 10.3 21 70-90 166-186 (450)
75 KOG1461 Translation initiation 99.4 4.1E-13 8.9E-18 129.6 8.6 89 229-317 316-405 (673)
76 TIGR02287 PaaY phenylacetic ac 99.4 2.7E-12 5.9E-17 110.6 12.8 79 229-312 48-132 (192)
77 TIGR01173 glmU UDP-N-acetylglu 99.4 1.8E-12 3.9E-17 126.1 11.8 51 229-279 297-348 (451)
78 cd03350 LbH_THP_succinylT 2,3, 99.4 8E-12 1.7E-16 102.4 13.5 93 210-302 13-117 (139)
79 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 5.3E-12 1.2E-16 112.7 13.0 32 263-294 174-206 (269)
80 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 1.4E-11 3E-16 107.5 15.6 10 280-289 133-142 (205)
81 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 7.7E-12 1.7E-16 111.7 13.8 71 232-302 127-209 (269)
82 cd04650 LbH_FBP Ferripyochelin 99.4 1.3E-11 2.8E-16 102.9 14.3 94 211-304 19-122 (154)
83 PLN02296 carbonate dehydratase 99.4 1E-11 2.2E-16 112.2 14.3 92 213-304 73-180 (269)
84 cd04649 LbH_THP_succinylT_puta 99.4 9.2E-12 2E-16 101.1 12.5 96 209-312 6-111 (147)
85 cd05787 LbH_eIF2B_epsilon eIF- 99.4 5.2E-12 1.1E-16 92.8 10.2 76 213-289 2-78 (79)
86 cd03359 LbH_Dynactin_5 Dynacti 99.4 1.3E-11 2.7E-16 103.8 13.6 47 246-292 73-120 (161)
87 PLN02472 uncharacterized prote 99.4 1.2E-11 2.5E-16 110.4 13.9 96 211-311 78-188 (246)
88 PRK09451 glmU bifunctional N-a 99.4 3.8E-12 8.3E-17 124.2 11.4 63 212-275 285-348 (456)
89 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 6.1E-12 1.3E-16 113.2 11.7 73 229-301 133-217 (272)
90 COG1043 LpxA Acyl-[acyl carrie 99.4 8.2E-12 1.8E-16 107.9 11.7 112 207-318 6-146 (260)
91 cd05635 LbH_unknown Uncharacte 99.4 1.3E-11 2.8E-16 95.4 11.8 84 210-295 11-95 (101)
92 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 1.9E-11 4.2E-16 110.0 13.8 71 247-317 134-215 (272)
93 PRK14356 glmU bifunctional N-a 99.3 6.7E-12 1.5E-16 122.4 11.3 66 246-311 288-354 (456)
94 PRK14358 glmU bifunctional N-a 99.3 7.7E-12 1.7E-16 122.8 11.7 72 246-317 341-420 (481)
95 cd03359 LbH_Dynactin_5 Dynacti 99.3 2.8E-11 6E-16 101.7 13.4 68 246-313 43-124 (161)
96 PRK14355 glmU bifunctional N-a 99.3 1.3E-11 2.8E-16 120.6 13.1 86 225-310 265-352 (459)
97 PRK14357 glmU bifunctional N-a 99.3 9.3E-12 2E-16 121.2 11.9 126 166-294 201-339 (448)
98 PRK14359 glmU bifunctional N-a 99.3 1.3E-11 2.7E-16 119.6 12.5 60 253-312 333-401 (430)
99 cd04645 LbH_gamma_CA_like Gamm 99.3 4.7E-11 1E-15 99.4 13.4 96 210-305 17-122 (153)
100 PRK13627 carnitine operon prot 99.3 3.3E-11 7.3E-16 104.2 12.8 66 230-295 51-122 (196)
101 KOG1462 Translation initiation 99.3 6.8E-12 1.5E-16 115.1 8.8 72 246-317 335-406 (433)
102 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 8.6E-11 1.9E-15 102.5 15.5 34 279-312 150-184 (205)
103 TIGR03570 NeuD_NnaD sugar O-ac 99.3 4.7E-11 1E-15 103.1 13.4 83 212-294 95-186 (201)
104 COG1207 GlmU N-acetylglucosami 99.3 7.2E-12 1.6E-16 116.6 8.4 93 225-317 265-359 (460)
105 cd03360 LbH_AT_putative Putati 99.3 5.2E-11 1.1E-15 102.0 13.2 98 206-308 86-186 (197)
106 cd04649 LbH_THP_succinylT_puta 99.3 9.8E-11 2.1E-15 95.1 13.3 55 262-317 47-110 (147)
107 PRK14352 glmU bifunctional N-a 99.3 4.3E-11 9.3E-16 117.6 13.6 68 246-313 358-434 (482)
108 COG0663 PaaY Carbonic anhydras 99.3 2.6E-11 5.7E-16 101.1 9.6 78 229-316 51-133 (176)
109 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.3 5.5E-11 1.2E-15 105.5 12.1 95 209-304 97-202 (231)
110 cd05635 LbH_unknown Uncharacte 99.3 1.5E-10 3.2E-15 89.6 12.5 84 228-313 11-96 (101)
111 TIGR03308 phn_thr-fam phosphon 99.2 7.4E-11 1.6E-15 102.8 12.0 92 211-308 20-144 (204)
112 PRK14354 glmU bifunctional N-a 99.2 7.4E-11 1.6E-15 115.1 13.2 40 71-110 166-209 (458)
113 COG1208 GCD1 Nucleoside-diphos 99.2 5.9E-11 1.3E-15 112.1 12.0 97 207-309 258-355 (358)
114 TIGR02092 glgD glucose-1-phosp 99.2 5.7E-11 1.2E-15 112.8 11.3 62 250-313 277-338 (369)
115 PRK05293 glgC glucose-1-phosph 99.2 1E-10 2.2E-15 111.5 12.2 86 227-314 275-360 (380)
116 TIGR02091 glgC glucose-1-phosp 99.2 1E-10 2.2E-15 110.7 11.2 67 247-314 279-345 (361)
117 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.9E-10 4.1E-15 104.0 11.4 34 280-314 251-284 (341)
118 cd03358 LbH_WxcM_N_like WcxM-l 99.2 5.3E-10 1.2E-14 88.7 11.6 81 212-297 12-103 (119)
119 COG1043 LpxA Acyl-[acyl carrie 99.1 2.6E-10 5.7E-15 98.7 9.9 49 246-294 82-139 (260)
120 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 7.7E-10 1.7E-14 100.1 12.6 92 213-312 187-288 (341)
121 PRK10191 putative acyl transfe 99.1 6.5E-10 1.4E-14 91.5 11.0 96 210-310 41-141 (146)
122 TIGR01172 cysE serine O-acetyl 99.1 4.2E-10 9E-15 94.6 10.0 33 263-295 114-147 (162)
123 PRK10092 maltose O-acetyltrans 99.1 9.8E-10 2.1E-14 94.0 12.4 81 210-293 59-155 (183)
124 COG2171 DapD Tetrahydrodipicol 99.1 4.6E-10 1E-14 99.0 9.9 99 217-315 109-219 (271)
125 PRK00725 glgC glucose-1-phosph 99.1 3.1E-10 6.8E-15 109.8 9.7 74 241-315 323-396 (425)
126 COG0448 GlgC ADP-glucose pyrop 99.1 4.6E-10 1E-14 104.5 9.3 82 232-315 283-364 (393)
127 PRK00844 glgC glucose-1-phosph 99.1 7.4E-10 1.6E-14 106.7 11.0 71 242-313 312-382 (407)
128 TIGR01208 rmlA_long glucose-1- 99.1 7.7E-10 1.7E-14 104.5 10.9 86 228-313 248-339 (353)
129 PLN02694 serine O-acetyltransf 99.1 8.5E-10 1.8E-14 99.6 10.5 83 210-297 160-248 (294)
130 PRK10502 putative acyl transfe 99.1 1.3E-09 2.8E-14 93.3 11.0 34 228-261 71-107 (182)
131 TIGR03535 DapD_actino 2,3,4,5- 99.1 2.5E-09 5.4E-14 96.3 12.7 53 262-315 199-260 (319)
132 PLN02241 glucose-1-phosphate a 99.0 1.1E-09 2.3E-14 106.4 10.6 79 233-313 304-401 (436)
133 PRK11132 cysE serine acetyltra 99.0 1.2E-09 2.7E-14 98.5 10.0 35 262-296 193-228 (273)
134 TIGR03535 DapD_actino 2,3,4,5- 99.0 2.6E-09 5.7E-14 96.1 11.7 90 214-312 163-263 (319)
135 PRK02862 glgC glucose-1-phosph 99.0 1.3E-09 2.7E-14 105.7 10.2 82 231-314 295-395 (429)
136 cd03357 LbH_MAT_GAT Maltose O- 99.0 4E-09 8.7E-14 89.3 11.7 49 210-261 48-98 (169)
137 PLN02357 serine acetyltransfer 99.0 2.9E-09 6.2E-14 98.8 11.1 97 210-311 226-328 (360)
138 PRK09527 lacA galactoside O-ac 99.0 5.9E-09 1.3E-13 90.5 12.4 51 208-261 59-111 (203)
139 PLN02694 serine O-acetyltransf 99.0 1.6E-09 3.6E-14 97.8 9.1 85 224-313 162-247 (294)
140 PRK11132 cysE serine acetyltra 99.0 3.3E-09 7.2E-14 95.7 10.8 84 221-312 140-227 (273)
141 PRK10502 putative acyl transfe 99.0 5.1E-09 1.1E-13 89.7 11.5 65 247-311 73-157 (182)
142 PRK09677 putative lipopolysacc 99.0 1.1E-08 2.3E-13 88.5 12.9 33 229-261 66-101 (192)
143 cd03354 LbH_SAT Serine acetylt 99.0 7.4E-09 1.6E-13 79.9 10.7 77 213-294 5-87 (101)
144 cd03354 LbH_SAT Serine acetylt 99.0 1E-08 2.2E-13 79.1 11.2 84 223-314 3-90 (101)
145 PRK09677 putative lipopolysacc 99.0 1.1E-08 2.3E-13 88.5 12.5 68 246-313 66-165 (192)
146 cd00208 LbetaH Left-handed par 99.0 7.1E-09 1.5E-13 75.4 9.7 33 231-263 3-36 (78)
147 KOG1460 GDP-mannose pyrophosph 98.9 3.2E-09 7E-14 94.6 8.9 90 225-314 285-389 (407)
148 cd00208 LbetaH Left-handed par 98.9 7.2E-09 1.6E-13 75.3 9.4 63 248-310 3-76 (78)
149 COG2171 DapD Tetrahydrodipicol 98.9 3.2E-09 7E-14 93.7 8.6 83 213-295 117-216 (271)
150 KOG1322 GDP-mannose pyrophosph 98.9 1.6E-09 3.5E-14 97.9 6.5 89 208-296 262-351 (371)
151 cd04647 LbH_MAT_like Maltose O 98.9 1.2E-08 2.6E-13 79.4 10.4 82 214-295 5-92 (109)
152 KOG3121 Dynactin, subunit p25 98.9 1.8E-09 3.8E-14 86.0 5.1 75 245-319 54-142 (184)
153 PLN02739 serine acetyltransfer 98.9 1.1E-08 2.3E-13 94.4 10.3 82 210-296 205-292 (355)
154 PRK09527 lacA galactoside O-ac 98.9 1.9E-08 4.1E-13 87.3 11.3 32 281-312 133-165 (203)
155 cd04198 eIF-2B_gamma_N The N-t 98.9 1.6E-09 3.4E-14 95.2 4.5 66 20-85 149-214 (214)
156 TIGR01172 cysE serine O-acetyl 98.9 1.7E-08 3.8E-13 84.8 10.5 35 279-313 113-148 (162)
157 cd04647 LbH_MAT_like Maltose O 98.9 1.7E-08 3.6E-13 78.6 9.6 86 224-312 3-92 (109)
158 cd05825 LbH_wcaF_like wcaF-lik 98.8 4.2E-08 9.1E-13 76.6 11.0 16 246-261 24-39 (107)
159 PRK10191 putative acyl transfe 98.8 6E-08 1.3E-12 79.8 11.3 14 247-260 94-107 (146)
160 cd06428 M1P_guanylylT_A_like_N 98.8 2.6E-09 5.7E-14 96.4 3.4 109 29-194 113-257 (257)
161 PLN02357 serine acetyltransfer 98.8 3.3E-08 7.3E-13 91.8 10.3 35 279-313 278-313 (360)
162 PRK10092 maltose O-acetyltrans 98.8 7.9E-08 1.7E-12 82.3 11.5 35 262-296 129-164 (183)
163 cd03357 LbH_MAT_GAT Maltose O- 98.8 6.5E-08 1.4E-12 81.8 10.5 26 216-241 62-89 (169)
164 PLN02739 serine acetyltransfer 98.8 3.6E-08 7.8E-13 91.0 9.4 21 269-289 258-279 (355)
165 COG1045 CysE Serine acetyltran 98.7 4.9E-08 1.1E-12 82.6 9.0 77 210-297 67-155 (194)
166 cd05825 LbH_wcaF_like wcaF-lik 98.7 1.9E-07 4.1E-12 72.9 10.1 33 263-295 57-90 (107)
167 cd06425 M1P_guanylylT_B_like_N 98.7 1.2E-08 2.6E-13 90.6 3.7 105 30-195 112-233 (233)
168 PF00483 NTP_transferase: Nucl 98.6 2.7E-08 5.9E-13 88.9 2.7 113 28-196 112-247 (248)
169 TIGR02623 G1P_cyt_trans glucos 98.6 4.4E-08 9.6E-13 88.3 4.0 107 28-197 127-247 (254)
170 COG1045 CysE Serine acetyltran 98.5 5.6E-07 1.2E-11 76.2 9.1 32 280-311 120-152 (194)
171 KOG3121 Dynactin, subunit p25 98.5 3.1E-07 6.7E-12 73.3 5.8 63 245-312 84-147 (184)
172 cd03349 LbH_XAT Xenobiotic acy 98.4 1.7E-06 3.8E-11 71.2 10.0 34 262-295 73-107 (145)
173 PRK10122 GalU regulator GalF; 98.4 1.8E-07 3.9E-12 86.3 3.3 68 70-194 207-276 (297)
174 TIGR01105 galF UTP-glucose-1-p 98.4 2.5E-07 5.3E-12 85.3 3.6 66 70-194 207-276 (297)
175 COG1209 RfbA dTDP-glucose pyro 98.3 3.1E-07 6.7E-12 81.6 3.3 156 29-257 109-284 (286)
176 cd03349 LbH_XAT Xenobiotic acy 98.3 5E-06 1.1E-10 68.5 10.2 34 279-312 73-107 (145)
177 cd02507 eIF-2B_gamma_N_like Th 98.3 5.5E-07 1.2E-11 79.2 4.1 62 24-85 153-216 (216)
178 TIGR02353 NRPS_term_dom non-ri 98.3 4E-06 8.7E-11 85.8 10.4 44 246-289 617-667 (695)
179 PRK13389 UTP--glucose-1-phosph 98.2 7.3E-07 1.6E-11 82.4 3.5 67 70-194 210-279 (302)
180 KOG4750 Serine O-acetyltransfe 98.2 2.5E-06 5.5E-11 73.4 6.2 75 211-294 149-233 (269)
181 cd02541 UGPase_prokaryotic Pro 98.2 9E-07 1.9E-11 80.2 3.7 69 70-195 195-265 (267)
182 TIGR02353 NRPS_term_dom non-ri 98.2 5.9E-06 1.3E-10 84.6 9.6 15 247-261 133-147 (695)
183 cd02538 G1P_TT_short G1P_TT_sh 98.2 1.7E-06 3.8E-11 77.1 5.1 69 70-194 166-237 (240)
184 TIGR01099 galU UTP-glucose-1-p 98.2 1E-06 2.3E-11 79.4 3.6 64 70-190 195-260 (260)
185 KOG4042 Dynactin subunit p27/W 98.2 2.1E-06 4.6E-11 69.2 4.4 52 211-262 9-64 (190)
186 cd02524 G1P_cytidylyltransfera 98.1 2.6E-06 5.6E-11 76.7 4.2 106 28-196 127-247 (253)
187 COG0110 WbbJ Acetyltransferase 98.0 3.4E-05 7.3E-10 66.2 9.9 37 222-261 67-103 (190)
188 cd06422 NTP_transferase_like_1 98.0 2.7E-06 5.8E-11 74.8 2.7 78 28-110 106-198 (221)
189 TIGR01207 rmlA glucose-1-phosp 98.0 6.5E-06 1.4E-10 75.6 4.9 77 31-110 111-207 (286)
190 PRK15480 glucose-1-phosphate t 97.9 9.8E-06 2.1E-10 74.6 4.7 76 31-110 115-211 (292)
191 KOG4042 Dynactin subunit p27/W 97.9 9E-06 1.9E-10 65.6 3.8 88 205-295 27-129 (190)
192 COG4801 Predicted acyltransfer 97.9 4.2E-05 9.2E-10 66.2 8.1 83 232-314 20-104 (277)
193 cd04189 G1P_TT_long G1P_TT_lon 97.8 1.5E-05 3.2E-10 70.7 3.8 70 70-196 163-235 (236)
194 cd04197 eIF-2B_epsilon_N The N 97.8 2.3E-05 5E-10 68.8 4.2 58 28-85 158-217 (217)
195 COG0110 WbbJ Acetyltransferase 97.7 0.0003 6.5E-09 60.2 9.8 34 263-296 125-159 (190)
196 COG4801 Predicted acyltransfer 97.6 0.00032 7E-09 60.9 7.8 95 213-308 19-115 (277)
197 cd04181 NTP_transferase NTP_tr 97.5 5.6E-05 1.2E-09 65.8 2.6 79 29-109 106-201 (217)
198 cd06426 NTP_transferase_like_2 97.4 0.00021 4.6E-09 62.5 5.4 63 70-191 158-220 (220)
199 cd06915 NTP_transferase_WcbM_l 97.4 0.00022 4.7E-09 62.3 5.3 61 70-190 162-222 (223)
200 cd02508 ADP_Glucose_PP ADP-glu 97.4 7.6E-05 1.6E-09 64.6 2.1 37 73-109 147-185 (200)
201 PF14602 Hexapep_2: Hexapeptid 97.4 0.00028 6.2E-09 42.9 3.8 10 249-258 5-14 (34)
202 PF14602 Hexapep_2: Hexapeptid 97.1 0.00061 1.3E-08 41.4 3.2 13 247-259 19-31 (34)
203 KOG4750 Serine O-acetyltransfe 97.1 0.00091 2E-08 57.9 5.4 77 231-312 151-234 (269)
204 PRK05450 3-deoxy-manno-octulos 97.0 0.0016 3.5E-08 58.0 6.5 21 70-90 174-194 (245)
205 cd02517 CMP-KDO-Synthetase CMP 96.7 0.0028 6.1E-08 56.2 5.6 21 70-90 171-191 (239)
206 cd04183 GT2_BcE_like GT2_BcbE_ 96.7 0.0017 3.7E-08 57.3 3.8 41 70-110 161-208 (231)
207 cd02523 PC_cytidylyltransferas 96.7 0.0037 8.1E-08 55.0 5.9 39 70-108 158-202 (229)
208 PRK13368 3-deoxy-manno-octulos 96.6 0.0027 5.9E-08 56.2 4.7 25 166-192 212-236 (238)
209 PF07959 Fucokinase: L-fucokin 96.4 0.0085 1.8E-07 57.9 6.7 49 236-284 275-323 (414)
210 PF07959 Fucokinase: L-fucokin 96.1 0.014 3E-07 56.4 6.8 38 228-265 284-321 (414)
211 PRK13412 fkp bifunctional fuco 95.4 0.089 1.9E-06 55.6 9.7 19 72-90 228-246 (974)
212 COG1664 CcmA Integral membrane 91.9 0.85 1.8E-05 37.5 7.3 71 243-314 48-119 (146)
213 PF04519 Bactofilin: Polymer-f 89.6 0.59 1.3E-05 35.6 4.3 62 251-314 36-98 (101)
214 PRK13412 fkp bifunctional fuco 89.4 0.54 1.2E-05 49.9 5.1 60 242-301 333-394 (974)
215 cd02540 GT2_GlmU_N_bac N-termi 87.7 1.2 2.5E-05 38.9 5.5 40 71-110 163-206 (229)
216 TIGR01479 GMP_PMI mannose-1-ph 87.2 0.69 1.5E-05 45.5 4.0 22 170-191 260-281 (468)
217 COG1210 GalU UDP-glucose pyrop 84.5 0.98 2.1E-05 40.9 3.3 71 68-196 198-271 (291)
218 PF04519 Bactofilin: Polymer-f 68.7 12 0.00025 28.3 4.9 26 269-294 70-95 (101)
219 cd02509 GDP-M1P_Guanylyltransf 66.7 4.4 9.6E-05 36.8 2.5 19 72-90 189-207 (274)
220 COG1664 CcmA Integral membrane 58.5 43 0.00094 27.4 6.6 61 235-296 58-118 (146)
221 KOG2638 UDP-glucose pyrophosph 45.9 25 0.00055 33.8 3.7 40 264-303 449-493 (498)
222 PLN02917 CMP-KDO synthetase 43.4 45 0.00097 30.6 5.0 18 71-88 219-236 (293)
223 KOG2638 UDP-glucose pyrophosph 35.8 52 0.0011 31.8 4.1 42 247-288 449-495 (498)
224 COG1213 Predicted sugar nucleo 25.5 1.7E+02 0.0038 26.0 5.4 22 175-196 209-230 (239)
No 1
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-42 Score=311.31 Aligned_cols=273 Identities=35% Similarity=0.607 Sum_probs=219.8
Q ss_pred ccccCCCCcccCCCCCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHHHHHHh
Q 020813 11 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl~~~l~ 90 (321)
.+++.||+|.|.+ +.+ ++++++.++.++++....+|.++.+.+++++||.||++++.++|.|+|||+|++|+++ ++.
T Consensus 151 s~~~~pgqk~k~k-~~~-d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~ 227 (433)
T KOG1462|consen 151 SEVPIPGQKGKKK-QAR-DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLS 227 (433)
T ss_pred ccccccCcccccc-ccc-ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHh
Confidence 3689999999884 667 7999999999999999989999999999999999999999999999999999999995 778
Q ss_pred ccccCCCCccchhHHHHHhhccccccc--CCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813 91 QKDKFQSLKQDVLPYLVRSQLKSEILI--NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 168 (321)
Q Consensus 91 ~~~~~~si~~dlip~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (321)
++....||+.||+|+|+++|++...-. |+.. ++. .+..+ .+.+.-...++.+|+
T Consensus 228 ~~~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~----------------~l~---t~~~~-----~~d~~~~~~d~ik~y 283 (433)
T KOG1462|consen 228 EKESISSFKADFLPYLVKKQFQKNPPLKKNETS----------------ILP---TPNLN-----NPDGIHSPDDRIKCY 283 (433)
T ss_pred cCCcceeecccccchhhhhhhhcCCCccccccc----------------ccC---Ccccc-----CcccccCcccceeee
Confidence 788899999999999999998643211 1100 000 01100 000100001247899
Q ss_pred EEEecCccceeeccCHHHHHHHchh--hccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEece
Q 020813 169 VYIASNSKYCVRLNSIQAFMDINRD--VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 246 (321)
Q Consensus 169 ~~i~~~~~~w~~i~t~~~y~~~~~~--~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~s 246 (321)
+|+.+.+..+.|++|+-.|+++|++ +..-. ++.. .+...+.. .+.++..++|+++|.|++++.|++|
T Consensus 284 ~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~----~e~~-----~~k~~~~~--~~l~g~d~iv~~~t~i~~~s~ik~S 352 (433)
T KOG1462|consen 284 AYILPTESLFVRANTLLSYMEINRDKKLKKLC----SEAK-----FVKNYVKK--VALVGADSIVGDNTQIGENSNIKRS 352 (433)
T ss_pred EEEccCccceEEecchHHHHhhhHHHHHHHhc----cccc-----cccchhhh--eeccchhhccCCCceecccceeeee
Confidence 9999999999999999999999962 22111 1111 11111111 1556778999999999999999999
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEeeecC
Q 020813 247 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 321 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~~~~k 321 (321)
+||.||.||++++|.+|+||+||+||+|+.|++||||++++||+|+.+.+|+||.+.+|++..+..+|++.+.|+
T Consensus 353 viG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev~~~~~d 427 (433)
T KOG1462|consen 353 VIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEVLVSNED 427 (433)
T ss_pred eecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccEeeccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988764
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=263.55 Aligned_cols=226 Identities=24% Similarity=0.407 Sum_probs=190.5
Q ss_pred ccEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeecC-----------------C-CccceEEeEeHHHHHHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIRA-----------------D-LMDAHMYAFNRSVLQEV 88 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~s-----------------~-l~d~giYi~~~~vl~~~ 88 (321)
|.++.||++.++..|++++||+|. ..+++++.+.+|+.+.++. + |+.+|||||++++|.++
T Consensus 128 DhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~ 207 (393)
T COG0448 128 DHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKEL 207 (393)
T ss_pred CEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHH
Confidence 599999999999999999999997 6789999999999887642 2 68899999999999999
Q ss_pred Hhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCc
Q 020813 89 LDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT 164 (321)
Q Consensus 89 l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (321)
|++. ....+|++|+||.+++.+
T Consensus 208 L~~~~~~~~~~~DfgkdiIp~~~~~~------------------------------------------------------ 233 (393)
T COG0448 208 LEEDAKDPNSSHDFGKDIIPKLLERG------------------------------------------------------ 233 (393)
T ss_pred HHHHhcccCccccchHHHHHHHHhcC------------------------------------------------------
Confidence 8742 346899999999998875
Q ss_pred ceeEEEEecCccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCC
Q 020813 165 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDK 240 (321)
Q Consensus 165 ~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~ 240 (321)
.++|| ++++||.||||+++||++|++++...+.+.. +++++... ..|++++..++.+ .+++|++||+|..
T Consensus 234 -~v~AY--~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~-~~pPak~~~~s~v-~nSLv~~GciI~G- 307 (393)
T COG0448 234 -KVYAY--EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNK-NLPPAKFVNDSEV-SNSLVAGGCIISG- 307 (393)
T ss_pred -CEEEE--eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCC-CCCCceEecCceE-eeeeeeCCeEEEe-
Confidence 36788 7899999999999999999999986555533 33444433 4688899888876 7999999999986
Q ss_pred CeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCe----------EECCCcEEcCCcE
Q 020813 241 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC----------QVGQGYVVSAGCE 310 (321)
Q Consensus 241 ~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~----------iIg~~~~V~~~~~ 310 (321)
+|.+|+|+.+++|+++|.|.+|+||++|.||+||.|.++||++||.|++|++|.+. +.+.-++|+.++.
T Consensus 308 -~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~~~~d~~~~~~~~~ivVv~k~~~ 386 (393)
T COG0448 308 -TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMV 386 (393)
T ss_pred -EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCCcchhccccccccCCcEEEecccE
Confidence 89999999999999999999999999999999999999999999999999988754 1233356666665
Q ss_pred EcCC
Q 020813 311 YKGE 314 (321)
Q Consensus 311 i~~~ 314 (321)
++.+
T Consensus 387 ~~~~ 390 (393)
T COG0448 387 IKLD 390 (393)
T ss_pred eccc
Confidence 5543
No 3
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.8e-31 Score=254.69 Aligned_cols=238 Identities=26% Similarity=0.470 Sum_probs=202.4
Q ss_pred CCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHHHHHHhccccCCCCccchhH
Q 020813 25 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP 104 (321)
Q Consensus 25 ~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip 104 (321)
++. .++++|..+..++|+..-.......+++++++..++.+++++||.|++|-||++.|+. ++.+|++|+ .|.||+.
T Consensus 174 ~~~-~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq-~r~DfV~ 250 (673)
T KOG1461|consen 174 TEQ-VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ-TRDDFVR 250 (673)
T ss_pred Ccc-eEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccce-ehhhhhh
Confidence 444 8999999777777776411112257788999999999999999999999999999996 567789999 9999998
Q ss_pred HHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCH
Q 020813 105 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI 184 (321)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~ 184 (321)
-++...+- ..+++.++.....|..++.++
T Consensus 251 GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA~rv~n~ 279 (673)
T KOG1461|consen 251 GVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYAARVENL 279 (673)
T ss_pred hhhhhhhc---------------------------------------------------CCeEEEEEcChhhhhhhhccc
Confidence 77665421 146788877666799999999
Q ss_pred HHHHHHchhhccccccC----------CCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEE
Q 020813 185 QAFMDINRDVIGEANHL----------SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI 254 (321)
Q Consensus 185 ~~y~~~~~~~l~~~~~~----------~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~I 254 (321)
++|..++++++.++.+. ..+.+...+.+..|.+.+...+.++.++.||.++.||.++.|.||+||+||.|
T Consensus 280 ~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~I 359 (673)
T KOG1461|consen 280 RSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRI 359 (673)
T ss_pred HHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEe
Confidence 99999999999887542 11233445667788899999999999999999999999999999999999999
Q ss_pred CCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeE
Q 020813 255 GSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESL 316 (321)
Q Consensus 255 g~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~ 316 (321)
|++++|.+|.||+||+||+||.|++|+|+++|+|++|++++ +|+||.+++|+++.++...+.
T Consensus 360 gsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~ 422 (673)
T KOG1461|consen 360 GSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSK 422 (673)
T ss_pred cCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccccc
Confidence 99999999999999999999999999999999999999995 999999999999999887743
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.95 E-value=6.9e-28 Score=215.04 Aligned_cols=210 Identities=17% Similarity=0.288 Sum_probs=136.6
Q ss_pred ccEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec-----------------CCCccceEEeEeHHHHHHHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR-----------------ADLMDAHMYAFNRSVLQEVL 89 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~-----------------s~l~d~giYi~~~~vl~~~l 89 (321)
|.++.+|+.+++.+|+++++|.|. .+.+. ..++||.+.+. ++-+|+|||+|+|++|..++
T Consensus 121 Dvi~~~p~~~~vqfH~~~gae~TI~~t~vd--epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 121 DVICRMPYKEMVQFHRAHGAEITIVVTKVD--EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRIL 198 (371)
T ss_pred CeeecCCHHHHHHHHHhcCCceEEEEEecc--CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhh
Confidence 589999999999999999999986 33333 35667766553 56899999999999998776
Q ss_pred hccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEE
Q 020813 90 DQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCV 169 (321)
Q Consensus 90 ~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (321)
...+||.+++||.+++. .++++
T Consensus 199 ---~~ptSiekEifP~~a~~-------------------------------------------------------~~l~a 220 (371)
T KOG1322|consen 199 ---LRPTSIEKEIFPAMAEE-------------------------------------------------------HQLYA 220 (371)
T ss_pred ---hcccchhhhhhhhhhhc-------------------------------------------------------CceEE
Confidence 44678999999977664 25678
Q ss_pred EEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEE
Q 020813 170 YIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVI 248 (321)
Q Consensus 170 ~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svI 248 (321)
|. .++||+|+|++++|+++...+++..+.... ..+ .|++.+ -.++++.+-..+|++|.|++ ++|
T Consensus 221 ~~--l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~------~r~-~p~~~i------~~nvlvd~~~~iG~~C~Ig~~vvI 285 (371)
T KOG1322|consen 221 FD--LPGFWMDIGQPKDFLTGFSFYLRSLPKYTS------PRL-LPGSKI------VGNVLVDSIASIGENCSIGPNVVI 285 (371)
T ss_pred Ee--cCchhhhcCCHHHHHHHHHHHHhhCcccCC------ccc-cCCccc------cccEeeccccccCCccEECCCceE
Confidence 84 589999999999999997777665432211 111 111222 22222323333333444443 456
Q ss_pred CCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 249 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 249 g~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
|++|+|++|++|.+|.++.++.++..+.|..++++.++.||.+++|+ +|+||++++|.+.-.+.
T Consensus 286 G~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn 350 (371)
T KOG1322|consen 286 GPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVN 350 (371)
T ss_pred CCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccc
Confidence 66666666666666666666666666666666666666666555554 45555555555444443
No 5
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.95 E-value=6.8e-27 Score=225.79 Aligned_cols=227 Identities=22% Similarity=0.378 Sum_probs=167.0
Q ss_pred ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-------------------------------------c
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-------------------------------------R 69 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-------------------------------------~ 69 (321)
|.++.+|+..++.+|.++++++|..+ +++.....+|+.+.+ .
T Consensus 125 D~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~ 204 (429)
T PRK02862 125 DQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGK 204 (429)
T ss_pred CEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCC
Confidence 34566777778888877777766432 222222223333322 1
Q ss_pred CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE 149 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (321)
.+++++|+|+|++++|..++.+.....++.+|++|+|++.+
T Consensus 205 ~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~--------------------------------------- 245 (429)
T PRK02862 205 PYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDY--------------------------------------- 245 (429)
T ss_pred ceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccC---------------------------------------
Confidence 24889999999999997777655456688899999986532
Q ss_pred cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhc-cccccCCC----cccccCCeeeCCCCeeCCCcE
Q 020813 150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSG----YNFSAQNNIIHPSAELGSKTT 224 (321)
Q Consensus 150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l-~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~ 224 (321)
++++| ..++||.|+||+++|+++|++++ ...+.... ....+. ..+.|++.+. ++.
T Consensus 246 ----------------~v~~~--~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~-~~~~~~a~~~-~~~ 305 (429)
T PRK02862 246 ----------------KVQSY--LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR-ARYLPPSKLL-DAT 305 (429)
T ss_pred ----------------cEEEE--EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceecc-CCCCCCcccc-ccE
Confidence 45677 45789999999999999999988 33322211 111222 3345666663 567
Q ss_pred ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECC-------------------CCEECCCcEEeceEECCC
Q 020813 225 VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGSVICSN 285 (321)
Q Consensus 225 i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~-------------------~v~Ig~~~~I~~~iI~~~ 285 (321)
+. +++||++|.| +++.|++|+||++|+||++|+|.+|+|++ ++.||++|.|.+|+|+++
T Consensus 306 ~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 383 (429)
T PRK02862 306 IT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN 383 (429)
T ss_pred EE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC
Confidence 74 6999999999 88999999999999999999999999987 699999999999999999
Q ss_pred CEECcCcEec-------------CeEECCC-cEEcCCcEEcCCe
Q 020813 286 AQLQERVALK-------------DCQVGQG-YVVSAGCEYKGES 315 (321)
Q Consensus 286 ~~Ig~~~~i~-------------~~iIg~~-~~V~~~~~i~~~~ 315 (321)
+.||+++++. +++|++| ++|+.+++++.++
T Consensus 384 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (429)
T PRK02862 384 ARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT 427 (429)
T ss_pred cEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence 9999999994 3566776 6677777666543
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.94 E-value=1.6e-26 Score=220.20 Aligned_cols=226 Identities=21% Similarity=0.303 Sum_probs=171.8
Q ss_pred ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHh
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~ 90 (321)
|.++..|+.+++..|.+++++++.. ..++.+...+|+.+.+. ++++++|+|+|++++|..+++
T Consensus 126 D~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 126 DHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred CEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHH
Confidence 3566678888888888887776643 23333334455555442 468999999999999976765
Q ss_pred cc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcce
Q 020813 91 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 166 (321)
Q Consensus 91 ~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (321)
+. ....++..|++|.|++++ .+
T Consensus 206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~ 231 (380)
T PRK05293 206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK 231 (380)
T ss_pred HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence 31 234466789999998765 24
Q ss_pred eEEEEecCccceeeccCHHHHHHHchhhccccccCCCc---ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeE
Q 020813 167 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY---NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 243 (321)
Q Consensus 167 v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~---~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I 243 (321)
+++| ..++||.++|++++|+++++.++......... ........+.+++.|++++.+ .++.|+++|.|+. .+
T Consensus 232 v~~~--~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v 306 (380)
T PRK05293 232 LYAY--PFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TV 306 (380)
T ss_pred EEEE--EeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--ee
Confidence 6677 44689999999999999999988654432211 011122345567788888888 5778888888863 57
Q ss_pred eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-----eEECCCcEEcCCcEEc
Q 020813 244 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-----CQVGQGYVVSAGCEYK 312 (321)
Q Consensus 244 ~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-----~iIg~~~~V~~~~~i~ 312 (321)
.+|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|++++.|+.++++.+ .+||+++.|+++++|+
T Consensus 307 ~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 307 EHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred cceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 78999999999999999999999999999999999999999999999999986 7899999999988764
No 7
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.93 E-value=1.4e-25 Score=217.09 Aligned_cols=227 Identities=19% Similarity=0.362 Sum_probs=163.0
Q ss_pred ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-------------------------------------c
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-------------------------------------R 69 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-------------------------------------~ 69 (321)
|.++.+|+..++..|.++++++|..+ +++.+...+|+.+.+ .
T Consensus 131 D~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (436)
T PLN02241 131 DHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEK 210 (436)
T ss_pred CeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCccccccccccccccccccccccc
Confidence 46778888889999999888877432 222211223333222 1
Q ss_pred CCCccceEEeEeHHHHHHHHhccc-cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH 148 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~-~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (321)
++++++|||+|++++|..++++.. ...++.+|++|.|++++
T Consensus 211 ~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g-------------------------------------- 252 (436)
T PLN02241 211 PYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEG-------------------------------------- 252 (436)
T ss_pred ceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcC--------------------------------------
Confidence 379999999999999976765432 23367789999998765
Q ss_pred ccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcE
Q 020813 149 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTT 224 (321)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~ 224 (321)
.++++| ..++||.|+|++++|++++++++...+.... ..+.+.. ...|++.+ .++.
T Consensus 253 ----------------~~v~~~--~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~~~ 312 (436)
T PLN02241 253 ----------------YNVQAY--LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSP-RFLPPSKI-EDCR 312 (436)
T ss_pred ----------------CeEEEE--eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccC-CCCCCcEe-cCCe
Confidence 256777 4478999999999999999999875432211 1112222 22355666 4566
Q ss_pred ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCC-------------------CEECCCcEEeceEECCC
Q 020813 225 VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSN 285 (321)
Q Consensus 225 i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~-------------------v~Ig~~~~I~~~iI~~~ 285 (321)
+.+ ++|+++|.|+ +|.|++|+||++|.||++|+|.+|+|+++ ++||++|.|++++|+++
T Consensus 313 i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~ 390 (436)
T PLN02241 313 ITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN 390 (436)
T ss_pred EEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC
Confidence 654 9999999999 99999999999999999999999999773 38999999999999999
Q ss_pred CEECcCcEecC-------eEECCCcEEcCCc-EEcCC
Q 020813 286 AQLQERVALKD-------CQVGQGYVVSAGC-EYKGE 314 (321)
Q Consensus 286 ~~Ig~~~~i~~-------~iIg~~~~V~~~~-~i~~~ 314 (321)
+.||+++.+.+ .++|++++|++|+ .|+..
T Consensus 391 v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 427 (436)
T PLN02241 391 ARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKN 427 (436)
T ss_pred CEECCCcEEecccccCCccccccccEEeCCEEEEcCC
Confidence 99999998841 2445555555552 44433
No 8
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.93 E-value=1.9e-25 Score=214.54 Aligned_cols=212 Identities=21% Similarity=0.378 Sum_probs=154.4
Q ss_pred ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeeec-----------------------CCCccceEEeEeHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDIR-----------------------ADLMDAHMYAFNRS 83 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~~-----------------------s~l~d~giYi~~~~ 83 (321)
|.++.+|+..++.+|.+++++++..+ .++.+...+|+.+.+. ++++++|+|+|+++
T Consensus 126 D~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~ 205 (407)
T PRK00844 126 DHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTD 205 (407)
T ss_pred CEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHH
Confidence 56778888889999998888877533 2333344455555442 35899999999999
Q ss_pred HHHHHHhc----cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCC
Q 020813 84 VLQEVLDQ----KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 159 (321)
Q Consensus 84 vl~~~l~~----~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (321)
+|.+++++ +....++..|++|+|++++
T Consensus 206 ~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~------------------------------------------------- 236 (407)
T PRK00844 206 ALVDALRRDAADEDSSHDMGGDIIPRLVERG------------------------------------------------- 236 (407)
T ss_pred HHHHHHHHhhcCCcccccchhhHHHHHhccC-------------------------------------------------
Confidence 98666553 2345678889999998865
Q ss_pred CCCCcceeEEEEe----------cCccceeeccCHHHHHHHchhhccccccCCCc----ccccCCeeeCCCCee-CCC--
Q 020813 160 PVRRTHKCCVYIA----------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAEL-GSK-- 222 (321)
Q Consensus 160 ~~~~~~~v~~~i~----------~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~p~a~i-~~~-- 222 (321)
++++|.. ..++||.|+|++++|+++|+++|........+ ...+.... .|++.+ +..
T Consensus 237 ------~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (407)
T PRK00844 237 ------RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPN-LPPAKFVDGGGR 309 (407)
T ss_pred ------eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCC-CCCceEecCCCc
Confidence 1333422 23689999999999999999999754432211 11111111 233333 222
Q ss_pred cEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC
Q 020813 223 TTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 296 (321)
Q Consensus 223 ~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 296 (321)
..+.+++.|+++|.|+ ++.|++|+||++|.|+++|+|.+|+||++|+||++|.|.+|+|++++.|++++++.+
T Consensus 310 ~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 310 VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 1234678999999998 899999999999999999999999999999999999999999999999998887754
No 9
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.92 E-value=2.2e-24 Score=208.15 Aligned_cols=211 Identities=21% Similarity=0.364 Sum_probs=150.5
Q ss_pred ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeeec-----------------------CCCccceEEeEeHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDIR-----------------------ADLMDAHMYAFNRS 83 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~~-----------------------s~l~d~giYi~~~~ 83 (321)
|.++..|+..++..|.+++++++... .++.....+|+.+.+. ++++++|||+|+++
T Consensus 138 D~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~ 217 (425)
T PRK00725 138 DHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNAD 217 (425)
T ss_pred CeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEECCCCccccccCccceEEEeeEEEEeHH
Confidence 46778888889999998888777532 2332333455555442 34889999999999
Q ss_pred HHHHHHhc---c-ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCC
Q 020813 84 VLQEVLDQ---K-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA 159 (321)
Q Consensus 84 vl~~~l~~---~-~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (321)
+|..++.+ + ....++.+|++|+|++++
T Consensus 218 ~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~------------------------------------------------- 248 (425)
T PRK00725 218 YLYELLEEDAEDPNSSHDFGKDIIPKIVEEG------------------------------------------------- 248 (425)
T ss_pred HHHHHHHHhhcCCCccchhhHHHHHHHhccC-------------------------------------------------
Confidence 98666643 1 234567789999998764
Q ss_pred CCCCcceeEEEEe---------cCccceeeccCHHHHHHHchhhccccccCCCcc----cccCCeeeCCCCee---CCCc
Q 020813 160 PVRRTHKCCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL---GSKT 223 (321)
Q Consensus 160 ~~~~~~~v~~~i~---------~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~p~a~i---~~~~ 223 (321)
++++|.. ..++||.|+|++++|+++|++++........+. ..+... ..|++.+ +.++
T Consensus 249 ------~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~-~~~~~~~~~~~~~~ 321 (425)
T PRK00725 249 ------KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQE-QLPPAKFVFDRSGR 321 (425)
T ss_pred ------cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCC-CCCCCeEeccCCCC
Confidence 2344432 235899999999999999999986543322111 111111 2233333 1221
Q ss_pred E-ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec
Q 020813 224 T-VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK 295 (321)
Q Consensus 224 ~-i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 295 (321)
. +..+++|+++|.| ++|.|++|+||++|.||++|+|.+|+||++|.||++|.|.+|+|++++.|+++++|.
T Consensus 322 ~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 322 RGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred cceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEEC
Confidence 1 2348899999999 688899999999999999999999999999999999999999999999999877665
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.8e-24 Score=202.46 Aligned_cols=197 Identities=19% Similarity=0.323 Sum_probs=133.6
Q ss_pred ccEEEecCCccEEEeeccccccccceeecHHHHhhcCee-------------------eecCCCccceEEeEeHHHHHHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQM-------------------DIRADLMDAHMYAFNRSVLQEV 88 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~-------------------~~~s~l~d~giYi~~~~vl~~~ 88 (321)
|.++.+|+..++.+|.++++..+..+.-..+. ..|+.+ ...++++++|+|+|++++|+ +
T Consensus 108 Dv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~-~ 185 (358)
T COG1208 108 DVLTDLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFD-Y 185 (358)
T ss_pred CeeeccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhh-h
Confidence 57888888888889988865555321110001 112111 33468999999999999997 4
Q ss_pred HhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813 89 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 168 (321)
Q Consensus 89 l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (321)
++ .....++..|++|+|++++. .++
T Consensus 186 i~-~~~~~~~~~~~~~~l~~~~~------------------------------------------------------~v~ 210 (358)
T COG1208 186 IE-KGERFDFEEELLPALAAKGE------------------------------------------------------DVY 210 (358)
T ss_pred cc-cCCcccchhhHHHHHHhCCC------------------------------------------------------cEE
Confidence 33 24467788899999998751 356
Q ss_pred EEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eE
Q 020813 169 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SV 247 (321)
Q Consensus 169 ~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-sv 247 (321)
+| ..++||.|+|++++|.+++..++........ ........ .+.. +.+.++++|+++|.|+.++.|+. ++
T Consensus 211 ~~--~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~-~~~~~~~~-----~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ 281 (358)
T COG1208 211 GY--VFEGYWLDIGTPEDLLEANELLLRGDGKSPL-GPIEEPVV-----IIRS-AYIIGPVVIGPGAKIGPGALIGPYTV 281 (358)
T ss_pred EE--EeCCeEEeCCCHHHHHHHHHHHHhccccccc-cccccccc-----cccc-ceEeCCEEECCCCEECCCCEECCCcE
Confidence 66 4477999999999999999998864332210 00000000 0233 44455555666666666666655 68
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECc
Q 020813 248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 290 (321)
Q Consensus 248 Ig~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~ 290 (321)
||++|.||+++.|.+|+||++|.|++++.|.+|+|+.+|+||+
T Consensus 282 ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 282 IGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred ECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 8888888888888888888888888888888888888888887
No 11
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.91 E-value=1.3e-23 Score=198.74 Aligned_cols=208 Identities=22% Similarity=0.396 Sum_probs=121.0
Q ss_pred cEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CC-------CccceEEeEeHHH
Q 020813 29 NIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------AD-------LMDAHMYAFNRSV 84 (321)
Q Consensus 29 ~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~-------l~d~giYi~~~~v 84 (321)
.++..|+..++..|.+++++.+.. ...+.+....++.+.+. +. ++++|+|+|++++
T Consensus 121 ~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~ 200 (361)
T TIGR02091 121 HIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDV 200 (361)
T ss_pred EEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHH
Confidence 455566666777777666655542 22332233334333221 22 7899999999999
Q ss_pred HHHHHhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCC
Q 020813 85 LQEVLDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAP 160 (321)
Q Consensus 85 l~~~l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (321)
|..++.+. ....++.+|+++.|++++
T Consensus 201 l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~-------------------------------------------------- 230 (361)
T TIGR02091 201 LKELLEEDADDPESSHDFGKDIIPRALEEG-------------------------------------------------- 230 (361)
T ss_pred HHHHHHHHhhcCCcccccHHHHHHHHhhcC--------------------------------------------------
Confidence 86665531 224567789999988753
Q ss_pred CCCcceeEEEEecCccceeeccCHHHHHHHchhhccccccCCCc----ccccCCeeeCCCCeeCCCcEECCCCEECCCCE
Q 020813 161 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ 236 (321)
Q Consensus 161 ~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~ 236 (321)
++++|. .++||.|+||+++|++++++++......... ...+....++|++.+++++
T Consensus 231 -----~v~~~~--~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------- 290 (361)
T TIGR02091 231 -----SVQAYL--FSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDA------------- 290 (361)
T ss_pred -----ceEEEe--eCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCC-------------
Confidence 456774 3689999999999999999998754322110 0001112233344444333
Q ss_pred ECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813 237 MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 237 I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~ 312 (321)
.+.+|+||++|.|+++ +|.+|+|+++|.|+++|.|.+|+|++++.|+.++.|.+|+||+++.|++++.+.
T Consensus 291 -----~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 291 -----QVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred -----EEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 3333455555555544 455555555555555555555555555555555555555555555555555543
No 12
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.89 E-value=1.1e-22 Score=193.08 Aligned_cols=210 Identities=17% Similarity=0.267 Sum_probs=120.8
Q ss_pred ccEEEecCCccEEEeeccccccccce-eecHHHHhhcC---------ee-ee-------cCCCccceEEeEeHHHHHHHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVG---------QM-DI-------RADLMDAHMYAFNRSVLQEVL 89 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~---------~~-~~-------~s~l~d~giYi~~~~vl~~~l 89 (321)
|.++.+|+..++.+|.++++++|..+ +++......++ .+ .+ ...++++|||+|++++|..++
T Consensus 123 D~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l 202 (369)
T TIGR02092 123 HMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELL 202 (369)
T ss_pred CEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHH
Confidence 56788999999999988888876532 22211112221 11 11 134789999999999876565
Q ss_pred hcc--ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCccee
Q 020813 90 DQK--DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC 167 (321)
Q Consensus 90 ~~~--~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (321)
++. ....++-.|+++.+++. .++
T Consensus 203 ~~~~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v 227 (369)
T TIGR02092 203 YECIQRGKLTSLEELIRENLKE-------------------------------------------------------LNI 227 (369)
T ss_pred HHHhhcCccccHHHHHHHHhcc-------------------------------------------------------CcE
Confidence 421 11222334677766542 235
Q ss_pred EEEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCC----eeeCCCCeeCCCcEECCCCEECCCCEECCCCeE
Q 020813 168 CVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQN----NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 243 (321)
Q Consensus 168 ~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~----~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I 243 (321)
++| ..++||.|+||+++|++++++++........+...... ..+.+++.|++ ++.|
T Consensus 228 ~~~--~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~------------------~~~i 287 (369)
T TIGR02092 228 NAY--EYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAE------------------NSKV 287 (369)
T ss_pred EEE--ecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcC------------------CCEE
Confidence 666 45789999999999999999998764321100000000 00113333333 3344
Q ss_pred eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 244 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 244 ~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
.+|+||++|+|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+|+||++++|++++.+.+.
T Consensus 288 ~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 288 ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 445555555554 245556666666666666666666666666666666666666666666665555543
No 13
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.87 E-value=1.7e-21 Score=183.84 Aligned_cols=213 Identities=16% Similarity=0.236 Sum_probs=130.4
Q ss_pred EEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee----------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813 30 IIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI----------------RADLMDAHMYAFNRSVLQEVLDQK 92 (321)
Q Consensus 30 l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~----------------~s~l~d~giYi~~~~vl~~~l~~~ 92 (321)
++..|+..++..|.+++++++... +++. ...++.+.+ .++++++|+|+|++.+++. +.+.
T Consensus 109 ~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~-l~~~ 185 (353)
T TIGR01208 109 LIQDGISRFVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEA-IKNI 185 (353)
T ss_pred ecCccHHHHHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEECHHHHHH-HHhc
Confidence 445666667777877777765422 2211 112222211 2578999999999988864 4321
Q ss_pred c---cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEE
Q 020813 93 D---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCV 169 (321)
Q Consensus 93 ~---~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (321)
. .....-.|+++.|+++| .++++
T Consensus 186 ~~~~~~e~~l~d~l~~l~~~g------------------------------------------------------~~v~~ 211 (353)
T TIGR01208 186 KPSWRGELEITDAIQWLIEKG------------------------------------------------------YKVGG 211 (353)
T ss_pred CCCCCCcEEHHHHHHHHHHcC------------------------------------------------------CeEEE
Confidence 1 11111357788887665 24667
Q ss_pred EEecCccceeeccCHHHHHHHchhhccccc-cCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEE
Q 020813 170 YIASNSKYCVRLNSIQAFMDINRDVIGEAN-HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 248 (321)
Q Consensus 170 ~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~-~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svI 248 (321)
| ..++||.+++++++|+++++.++.+.. .+.+ ......+.+++.|++++.| .++.|+++|.||++|.|++++|
T Consensus 212 ~--~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~---i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i 285 (353)
T TIGR01208 212 S--KVTGWWKDTGKPEDLLDANRLILDEVEREVQG---VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYI 285 (353)
T ss_pred E--EeCcEEEeCCCHHHHHHHHHHHHhhcccccCC---cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEE
Confidence 7 457899999999999999999987421 1111 1223445566666666666 5666666666666666666666
Q ss_pred CCCCEECCCcEEe-----ceEECCCCEECCC-cEEeceEECCCCEECcCcEec---CeEECCCcEE
Q 020813 249 GRHCRIGSNVKVV-----NSVVMNHVTIGDG-CSIQGSVICSNAQLQERVALK---DCQVGQGYVV 305 (321)
Q Consensus 249 g~~~~Ig~~~~I~-----~siI~~~v~Ig~~-~~I~~~iI~~~~~Ig~~~~i~---~~iIg~~~~V 305 (321)
+++|.||++|.|. +|+|+++++|+.+ +.+.++++++++.|++++.+. +.++|+.++|
T Consensus 286 ~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~ 351 (353)
T TIGR01208 286 GPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQV 351 (353)
T ss_pred CCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCcee
Confidence 6666666665553 6666666666666 366667777777777666664 2455555554
No 14
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.1e-22 Score=176.49 Aligned_cols=235 Identities=17% Similarity=0.302 Sum_probs=161.1
Q ss_pred CCccEEEeecccccccc-ceeecHHHHhhcCeee-----------------ecCCCccceEEeEeHHHHHHHHhccccCC
Q 020813 35 PTKQFLLHIATGAELEK-DTRIRKSILRAVGQMD-----------------IRADLMDAHMYAFNRSVLQEVLDQKDKFQ 96 (321)
Q Consensus 35 ~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~-----------------~~s~l~d~giYi~~~~vl~~~l~~~~~~~ 96 (321)
+.+|+..|...++..+. ...+.++...+||.+. +-||.+++|||+|++++|+.+.+-..
T Consensus 123 l~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~--- 199 (407)
T KOG1460|consen 123 LQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYR--- 199 (407)
T ss_pred HHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHH---
Confidence 45678888888877765 4566777777887752 34899999999999999975532111
Q ss_pred CCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEecCcc
Q 020813 97 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK 176 (321)
Q Consensus 97 si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 176 (321)
-++|+.-. .+++.. + ...++ +.-..+.+++.. -.| ...+|+| ...+
T Consensus 200 -q~~~~~~~--~~~~~~--l-~~g~~-------d~irLeqDvlsp-------------Lag------~k~lY~y--~t~~ 245 (407)
T KOG1460|consen 200 -QRQDLLEV--EKDLPL--L-QPGPA-------DFIRLEQDVLSP-------------LAG------SKQLYAY--ETTD 245 (407)
T ss_pred -HHHhhhhh--hhcccc--c-CCCcc-------ceEEeechhhhh-------------hcC------CCceEEE--eccc
Confidence 11221111 011100 0 00000 000111122210 011 1356777 6789
Q ss_pred ceeeccCHHHHHHHchhhccccc-----cCC---C-cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceE
Q 020813 177 YCVRLNSIQAFMDINRDVIGEAN-----HLS---G-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV 247 (321)
Q Consensus 177 ~w~~i~t~~~y~~~~~~~l~~~~-----~~~---~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~sv 247 (321)
||..+.|..+-+.+++.+|.... .+. + ..++-.+++|||+|++++.+.||+|+.||++++||+|+.|++|+
T Consensus 246 fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sI 325 (407)
T KOG1460|consen 246 FWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESI 325 (407)
T ss_pred HHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeee
Confidence 99999999888888887765211 111 1 12455689999999999999999999999999999999999999
Q ss_pred ECCCCEECCCcEEeceEECCCCEECCCcEEec--------------eEECCCCEECcCcEecCeEECCCcEEc
Q 020813 248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------------SVICSNAQLQERVALKDCQVGQGYVVS 306 (321)
Q Consensus 248 Ig~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~--------------~iI~~~~~Ig~~~~i~~~iIg~~~~V~ 306 (321)
|-++|.|.+|+++-+|+|+.++.||..+++++ +++|..+.+++-+.+.+|++-++-.+.
T Consensus 326 Il~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~ 398 (407)
T KOG1460|consen 326 ILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELN 398 (407)
T ss_pred eccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccc
Confidence 99999999999999999999999999999975 567777777777777777666655443
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.86 E-value=8.6e-21 Score=185.08 Aligned_cols=170 Identities=14% Similarity=0.243 Sum_probs=124.2
Q ss_pred CCCccceEEeEeHHHHHHHHhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
++++++|+|+|++++|.++++.. ...+..-.|+++.|++++
T Consensus 168 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g----------------------------------- 212 (459)
T PRK14355 168 IREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEG----------------------------------- 212 (459)
T ss_pred ccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCC-----------------------------------
Confidence 36889999999999765555421 111222358888888765
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEecCccc--eeeccCHHHHHHHchhhccccc---------cCCCc-ccccCCeee
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN---------HLSGY-NFSAQNNII 213 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~---------~~~~~-~~~~~~~~i 213 (321)
.++.+| +.++| |.+++++++|+++++.++.... .+... ..+..++.|
T Consensus 213 -------------------~~v~~~--~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~i 271 (459)
T PRK14355 213 -------------------LRCLAF--PVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVI 271 (459)
T ss_pred -------------------CeEEEE--EcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEE
Confidence 256677 44566 9999999999999875543210 11111 123445556
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV 292 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~ 292 (321)
++++.|++++.|++++.||++|.|+.++.|.+|+||++|+|++++.|.+++|++++.||+++.+. ++.|++++.||.++
T Consensus 272 g~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 272 GRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred cCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 66677777777777888888888888888989999999999999999999999999999999887 78888888888776
Q ss_pred Eec
Q 020813 293 ALK 295 (321)
Q Consensus 293 ~i~ 295 (321)
.++
T Consensus 352 ~~~ 354 (459)
T PRK14355 352 ETK 354 (459)
T ss_pred ccc
Confidence 443
No 16
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=4.4e-20 Score=179.91 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=127.2
Q ss_pred CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
++++++|||+|++++|+.+++.-. .....-.|+++.+++.+
T Consensus 169 ~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g----------------------------------- 213 (456)
T PRK14356 169 TGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEG----------------------------------- 213 (456)
T ss_pred cCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCC-----------------------------------
Confidence 567899999999999876654211 11112347777776544
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccccc--C-CC-------cccccCCeeeCC
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANH--L-SG-------YNFSAQNNIIHP 215 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~--~-~~-------~~~~~~~~~i~p 215 (321)
.++.+|......+|.+++++++|.+++..+...... + .+ ..+....+.|++
T Consensus 214 -------------------~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~ 274 (456)
T PRK14356 214 -------------------MNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEP 274 (456)
T ss_pred -------------------CeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECC
Confidence 245565332233689999999999987655432110 0 11 112233445555
Q ss_pred CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813 216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
++.|.+++.+++++.||++|.|+++|.|.+|+||++|.|++++.|.+++|+++|.||+++.|. +++|+++++||+++.+
T Consensus 275 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 275 GAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred CCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 555555566666788999999999999999999999999999999999999999999999997 8899999988888877
Q ss_pred cCeEECCCcEE
Q 020813 295 KDCQVGQGYVV 305 (321)
Q Consensus 295 ~~~iIg~~~~V 305 (321)
.+++|++++.+
T Consensus 355 ~~~~i~~~~~i 365 (456)
T PRK14356 355 KKAVLGKGAKA 365 (456)
T ss_pred eeeEecCCcEe
Confidence 66555554433
No 17
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=8.8e-20 Score=176.46 Aligned_cols=169 Identities=13% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
++++++|+|+|++++|..++.... .....-.|+++.+++.+
T Consensus 160 ~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g----------------------------------- 204 (430)
T PRK14359 160 IKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKG----------------------------------- 204 (430)
T ss_pred ceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcC-----------------------------------
Confidence 357899999999999986654211 11223357778777654
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccccc----------CCCcccccCCeeeCC
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANH----------LSGYNFSAQNNIIHP 215 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~----------~~~~~~~~~~~~i~p 215 (321)
.++.+|.. ...+|.+++++++|++++..+..+... .....+...++.|.+
T Consensus 205 -------------------~~v~~~~~-~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g 264 (430)
T PRK14359 205 -------------------ETIKAVFV-DEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEG 264 (430)
T ss_pred -------------------CeEEEEEc-CCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcC
Confidence 24566633 246999999999999998655432110 000112222333333
Q ss_pred CCeeCCCcEECCC-----CEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCC----------EECCCcEEece
Q 020813 216 SAELGSKTTVGPH-----CMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHV----------TIGDGCSIQGS 280 (321)
Q Consensus 216 ~a~i~~~~~i~~~-----~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v----------~Ig~~~~I~~~ 280 (321)
.+.+++++.|+++ +.|+++|.|++ +.|.+|+||++|.|++++.|.+|+|+++| +||+++.|++|
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~ 343 (430)
T PRK14359 265 ECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDC 343 (430)
T ss_pred ceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCC
Confidence 3334444444333 34444554433 34456677777777777766666555555 44555555666
Q ss_pred EECCCCEECcCcEe
Q 020813 281 VICSNAQLQERVAL 294 (321)
Q Consensus 281 iI~~~~~Ig~~~~i 294 (321)
+||+++.||+++++
T Consensus 344 ~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 344 EIDEGTNIGAGTIT 357 (430)
T ss_pred EECCCCEECCCceE
Confidence 66666666665544
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=8.1e-20 Score=179.24 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=122.5
Q ss_pred CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
.+++++|+|+|++++|..++++.. .....-.|++++|++++
T Consensus 171 ~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g----------------------------------- 215 (482)
T PRK14352 171 IREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAG----------------------------------- 215 (482)
T ss_pred cceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCC-----------------------------------
Confidence 346899999999999976654211 11222368888888765
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHH------HHHchhhcccccc-----CCC-cccccCCeee
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAF------MDINRDVIGEANH-----LSG-YNFSAQNNII 213 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y------~~~~~~~l~~~~~-----~~~-~~~~~~~~~i 213 (321)
.++++| +.++||.++|+.+.| ..+++.++..... +.+ ..++..+++|
T Consensus 216 -------------------~~V~~~--~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~i 274 (482)
T PRK14352 216 -------------------HRVGAH--HADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTI 274 (482)
T ss_pred -------------------CeEEEE--ecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEE
Confidence 246666 568899999988777 5555554432111 010 1234456677
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV 292 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~ 292 (321)
++++.|++++.|++++.||++|.|+++|.|.+|+||++|.|+. +.+.+++|++++.||+++.+. +++|++++.||.++
T Consensus 275 g~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~ 353 (482)
T PRK14352 275 GRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFV 353 (482)
T ss_pred CCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcE
Confidence 7777777777887888888888888888888888888888764 667777777777777777775 66666666555444
Q ss_pred Ee-----------------cCeEECCCcEEcCCcEE
Q 020813 293 AL-----------------KDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 293 ~i-----------------~~~iIg~~~~V~~~~~i 311 (321)
.+ .+++||+++.|++++.+
T Consensus 354 ~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i 389 (482)
T PRK14352 354 ETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVF 389 (482)
T ss_pred EEcccEECCCcEEccCceecccEECCCcEECCCcEE
Confidence 33 34555555666655544
No 19
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=4.6e-20 Score=179.84 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=115.8
Q ss_pred CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
++++++|+|+|++++|.+++++-. ..+.+-.|++|.+++++.
T Consensus 165 ~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~---------------------------------- 210 (456)
T PRK09451 165 IQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGR---------------------------------- 210 (456)
T ss_pred ccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCC----------------------------------
Confidence 357999999999999876664311 122234699999988762
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEe----cCccc--eeeccCHHHHHHHch--hhccccccC-CC-cccccCCeeeCC
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIA----SNSKY--CVRLNSIQAFMDINR--DVIGEANHL-SG-YNFSAQNNIIHP 215 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~----~~~~~--w~~i~t~~~y~~~~~--~~l~~~~~~-~~-~~~~~~~~~i~p 215 (321)
++.+|.. ...+| |.+++++++|+++++ .++.....+ .+ .........+++
T Consensus 211 --------------------~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 211 --------------------EIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred --------------------eEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 3445521 13466 677999999999874 232221110 11 001112345666
Q ss_pred CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813 216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
++.|++++.|.+++.||++|.|+++|.|++|+||++|.|++++.|.+|+|++++.||+++.|. ++.+++++.||+++.+
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 777777777777778888888888888877888888888888888888888888888877776 6777777776666555
Q ss_pred c
Q 020813 295 K 295 (321)
Q Consensus 295 ~ 295 (321)
.
T Consensus 351 ~ 351 (456)
T PRK09451 351 K 351 (456)
T ss_pred e
Confidence 3
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=2.1e-19 Score=174.73 Aligned_cols=189 Identities=12% Similarity=0.176 Sum_probs=108.4
Q ss_pred CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813 71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 146 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (321)
++.++|+|+|++..|..++++.. .....-.|+++.|++.+
T Consensus 170 ~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g------------------------------------ 213 (446)
T PRK14353 170 TLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEG------------------------------------ 213 (446)
T ss_pred eEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCC------------------------------------
Confidence 57889999999987755554311 11112246677777755
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc---------cccCCCc-ccccCCeeeCCC
Q 020813 147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE---------ANHLSGY-NFSAQNNIIHPS 216 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~---------~~~~~~~-~~~~~~~~i~p~ 216 (321)
.+++++.. ...+|.+++++++|.+++..+... ...+.+. .+......|+++
T Consensus 214 ------------------~~v~~~~~-~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 274 (446)
T PRK14353 214 ------------------LRVAVVEA-PEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD 274 (446)
T ss_pred ------------------CeEEEEec-ChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence 24556532 236799999999998887533211 0001110 123334455555
Q ss_pred CeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec----------------
Q 020813 217 AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------------- 279 (321)
Q Consensus 217 a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~---------------- 279 (321)
+.|++++.|++++.|+++|.|+.++.|.+++||++|+||+++.|. +|+|+++|.||++|.+.+
T Consensus 275 ~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~ 354 (446)
T PRK14353 275 VVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIG 354 (446)
T ss_pred CEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEc
Confidence 555555555555666666666655555566777777777777665 566666666666665544
Q ss_pred -eEECCCCEECcCcEe--------cCeEECCCcEEcCCcEEcCC
Q 020813 280 -SVICSNAQLQERVAL--------KDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 280 -~iI~~~~~Ig~~~~i--------~~~iIg~~~~V~~~~~i~~~ 314 (321)
++|++++.||+++++ .+++||++++|++++.+.+.
T Consensus 355 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 355 DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 455556666665443 13444555444444444433
No 21
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.83 E-value=1.2e-19 Score=176.42 Aligned_cols=176 Identities=17% Similarity=0.248 Sum_probs=124.9
Q ss_pred CCccceEEeEeHHHHHHHHhcccc----CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813 71 DLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 146 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~l~~~~~----~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (321)
+++++|+|+|++++|..+++.... .+..-.++++.|++++
T Consensus 162 ~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g------------------------------------ 205 (451)
T TIGR01173 162 KEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADG------------------------------------ 205 (451)
T ss_pred cEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCC------------------------------------
Confidence 467899999999997665543111 1112247778877765
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEecCccc--eeeccCHHHHHHHchhhccccc--------cC--CCcccccCCeeeC
Q 020813 147 FHELYALGPNGSAPVRRTHKCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN--------HL--SGYNFSAQNNIIH 214 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~--------~~--~~~~~~~~~~~i~ 214 (321)
.++++| +.++| |.+++++++|.+++..+..+.. .+ ...........|+
T Consensus 206 ------------------~~v~~~--~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig 265 (451)
T TIGR01173 206 ------------------ETVRAV--QVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIG 265 (451)
T ss_pred ------------------CeEEEE--EcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEEC
Confidence 245666 44666 8999999999877654432110 01 1111234455667
Q ss_pred CCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcE
Q 020813 215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVA 293 (321)
Q Consensus 215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~ 293 (321)
+++.|++++.|++++.||++|.|+++|.|++++||++|.|++++.|.+++|+++|.||+++.|. +++|++++.|++++.
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~ 345 (451)
T TIGR01173 266 RDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE 345 (451)
T ss_pred CCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence 7777777778877888888889998888989999999999999999999999999999998887 788888888888776
Q ss_pred ecCeEECCC
Q 020813 294 LKDCQVGQG 302 (321)
Q Consensus 294 i~~~iIg~~ 302 (321)
+.++.||++
T Consensus 346 i~~~~ig~~ 354 (451)
T TIGR01173 346 TKNARIGKG 354 (451)
T ss_pred ecCcEECCC
Confidence 655544443
No 22
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=8.5e-19 Score=171.83 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=103.8
Q ss_pred eeEEEEecCccceeeccCHHHHHHHchh-hcccccc----------CCC-cccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813 166 KCCVYIASNSKYCVRLNSIQAFMDINRD-VIGEANH----------LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGE 233 (321)
Q Consensus 166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~-~l~~~~~----------~~~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~ 233 (321)
++++| +.+++|..++...+|+.+++. ++..... ..+ ..+...+..|++++.|++++.|.+++.||+
T Consensus 216 ~i~~~--~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~ 293 (481)
T PRK14358 216 QVRAF--KLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVAD 293 (481)
T ss_pred eEEEE--ecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECC
Confidence 45666 456788888887777666654 3322110 001 111234455666667777777777777899
Q ss_pred CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-----------------
Q 020813 234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK----------------- 295 (321)
Q Consensus 234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~----------------- 295 (321)
+|.|+.+|.|++|+||++|.|++++.|.+++|++++.||+++.|. +++|++++.|++++.|.
T Consensus 294 ~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~ 373 (481)
T PRK14358 294 GVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLG 373 (481)
T ss_pred CCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEEC
Confidence 999999999999999999999999999999999999999999987 78888888888866643
Q ss_pred CeEECCCcEEcCCcEEc
Q 020813 296 DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 296 ~~iIg~~~~V~~~~~i~ 312 (321)
+++||+++.|++++.+.
T Consensus 374 ~~~ig~~~~ig~~~~i~ 390 (481)
T PRK14358 374 DVTIGAETNVGAGTIVA 390 (481)
T ss_pred CeEEcCCceEcCCEEEe
Confidence 35566666666666554
No 23
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=9.1e-18 Score=155.53 Aligned_cols=194 Identities=16% Similarity=0.252 Sum_probs=131.5
Q ss_pred CccceEEeEeHHHHHHHHhc----cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813 72 LMDAHMYAFNRSVLQEVLDQ----KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 147 (321)
Q Consensus 72 l~d~giYi~~~~vl~~~l~~----~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (321)
.+|+|+|+|+...|..+|.. |...+..-.|+|-.+...+
T Consensus 170 eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g------------------------------------- 212 (460)
T COG1207 170 EINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEG------------------------------------- 212 (460)
T ss_pred EEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCC-------------------------------------
Confidence 79999999999988777753 2333444455555554443
Q ss_pred cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc---cccCCC-------cccccCCeeeCCCC
Q 020813 148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE---ANHLSG-------YNFSAQNNIIHPSA 217 (321)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~---~~~~~~-------~~~~~~~~~i~p~a 217 (321)
.++.++......-..-+++.....++.+.+..+ ..+..+ ..++.....|.+.+
T Consensus 213 -----------------~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dv 275 (460)
T COG1207 213 -----------------EKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDV 275 (460)
T ss_pred -----------------CeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCce
Confidence 244555332222334455555555444433211 111111 12334455556666
Q ss_pred eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813 218 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 296 (321)
Q Consensus 218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 296 (321)
.|.+++.+..++.||++|+||.+|.|++|.||+|+.|.+.+.|.+|.|++++.||+.++++ ++.++++++||..+.+++
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~ 355 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK 355 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEec
Confidence 6666777777778899999999999999999999999999999999999999999999999 999999999999999877
Q ss_pred eEECCCc-----------EEcCCcEEcCCeEeee
Q 020813 297 CQVGQGY-----------VVSAGCEYKGESLARK 319 (321)
Q Consensus 297 ~iIg~~~-----------~V~~~~~i~~~~~~~~ 319 (321)
+.||+++ .|++++.|+.+++.+.
T Consensus 356 a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcN 389 (460)
T COG1207 356 ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCN 389 (460)
T ss_pred ccccCCccccceeeeccceecCCceeccceEEEc
Confidence 7666553 4444455554454443
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=6.3e-17 Score=157.82 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=81.8
Q ss_pred eeEEEEecCccc--eeeccCHHHHHHHchhhccccc--------c-CCC-cccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813 166 KCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN--------H-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGE 233 (321)
Q Consensus 166 ~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~--------~-~~~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~ 233 (321)
++++|. .+++ |.++.+++++..++..+..... . +.. ..++..++.|++++.|++++.+++++.||+
T Consensus 211 ~v~~~~--~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~ 288 (458)
T PRK14354 211 KVGAYQ--TEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGE 288 (458)
T ss_pred eEEEEe--cCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECC
Confidence 456663 3545 4566789888877654321110 0 111 112333444555555555555656667777
Q ss_pred CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCc
Q 020813 234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGY 303 (321)
Q Consensus 234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~ 303 (321)
+|.|++++.|.+|+||++|.|++ +.+.+++|+++|.||++|.|. +++|++++.|++++.+.+++|++++
T Consensus 289 ~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 289 DCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred CCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence 77777777777777777777763 566677777777777777776 6777777777766666444444433
No 25
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.73 E-value=4e-17 Score=144.60 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=106.1
Q ss_pred CccceeeccCHHHHHHHchhhccccccCC-Cccc-ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECC
Q 020813 174 NSKYCVRLNSIQAFMDINRDVIGEANHLS-GYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGR 250 (321)
Q Consensus 174 ~~~~w~~i~t~~~y~~~~~~~l~~~~~~~-~~~~-~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~ 250 (321)
.++||.|+ ++|+++|+++|....... .... .....+++.++.|++++.+.+++.||+++.|+.++.|.. ++||+
T Consensus 45 ~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~ 121 (231)
T TIGR03532 45 LFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGE 121 (231)
T ss_pred EEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECC
Confidence 47899999 999999999987643100 0000 011113455566666666667777777777777777764 89999
Q ss_pred CCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813 251 HCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 251 ~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~ 313 (321)
+|.|++++.|. +++|+++|.||.++.|.+ ++|++++.||+++.+ .++.||++++|++++.+.+
T Consensus 122 ~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 122 GTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred CCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 99999999996 899999999999999974 899999999999988 5899999999999998754
No 26
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.72 E-value=1.9e-16 Score=154.01 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=16.6
Q ss_pred CCccceEEeEeHHHHHHHHh
Q 020813 71 DLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~l~ 90 (321)
+++++|+|+|++++|.++++
T Consensus 160 ~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 160 KEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred cEEEeEEEEEEHHHHHHHHH
Confidence 58999999999999766554
No 27
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.68 E-value=1.1e-15 Score=128.65 Aligned_cols=86 Identities=22% Similarity=0.370 Sum_probs=61.5
Q ss_pred CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCE
Q 020813 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 287 (321)
Q Consensus 209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~ 287 (321)
...+|++++.|++++.+.++++|+++|.|++++.|+. ++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.
T Consensus 16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~ 95 (163)
T cd05636 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVN 95 (163)
T ss_pred CCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCE
Confidence 3455666666666666666677777777777777763 777777777777777777777777777777777777777777
Q ss_pred ECcCcEe
Q 020813 288 LQERVAL 294 (321)
Q Consensus 288 Ig~~~~i 294 (321)
|++++.+
T Consensus 96 I~~~~~i 102 (163)
T cd05636 96 LGAGTIT 102 (163)
T ss_pred ECCCcEE
Confidence 7777765
No 28
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=4.3e-15 Score=144.59 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=56.7
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL 288 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~I 288 (321)
...+++++.|++++.|++++.||++|.|++++.|.+|+||++|.|+ ++.+.+|+|+++|.||++|.|. +++|++++.|
T Consensus 262 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~I 340 (450)
T PRK14360 262 TVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRI 340 (450)
T ss_pred CEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEE
Confidence 3445555555555566666666666666666666666666665553 3444555555555555555554 4555555555
Q ss_pred CcCcEe-----------------cCeEECCCcEEcCCcEE
Q 020813 289 QERVAL-----------------KDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 289 g~~~~i-----------------~~~iIg~~~~V~~~~~i 311 (321)
++++.+ .+++||+++.|++++.+
T Consensus 341 g~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~ 380 (450)
T PRK14360 341 GNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTIT 380 (450)
T ss_pred CCCEEEeccccCCCcEeccceecCCceecCCcEECcccee
Confidence 555544 34455555555555544
No 29
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.65 E-value=3.9e-15 Score=125.35 Aligned_cols=106 Identities=25% Similarity=0.409 Sum_probs=91.7
Q ss_pred cccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-------
Q 020813 206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ------- 278 (321)
Q Consensus 206 ~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~------- 278 (321)
......+|++++.|++++.+.++++|+++|.|++++.|.+|+|++++.|+.++.+.+|+|++++.|++++.+.
T Consensus 31 ~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~ 110 (163)
T cd05636 31 YIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDK 110 (163)
T ss_pred EEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCc
Confidence 3344667788888888888888899999999999999999999999999999999999999999999999884
Q ss_pred ------------------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813 279 ------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 311 (321)
Q Consensus 279 ------------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i 311 (321)
+++|++++.||.++.|. ++.|+++++|++|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 111 PVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred ceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 47888888888887775 7888888888887765
No 30
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.64 E-value=4.1e-15 Score=128.11 Aligned_cols=103 Identities=21% Similarity=0.371 Sum_probs=80.7
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEE
Q 020813 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVI 282 (321)
Q Consensus 212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I-----~~siI~~~v~Ig~~~~I~~~iI 282 (321)
.|++++.|++++.+.+++.||++|.|+.+|.|. ..+||++|.||++|.| .+|+|+++++|++++.|.+|+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI 89 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV 89 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence 445566666666665666666777776666665 4689999999999999 4799999999999999999999
Q ss_pred CCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 283 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 283 ~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
++++.||.++.+. +++||++++|++++.+...
T Consensus 90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred CCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 9999999998884 5777777777777666553
No 31
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.63 E-value=6.1e-15 Score=123.16 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=77.2
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEECC
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVICS 284 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I-----~~siI~~~v~Ig~~~~I~~~iI~~ 284 (321)
++++.+.+++.+.+++.||++|.|+++|.|. .++||++|.|+++|.| .+|+|++++.|++++.+.+++|++
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 83 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGR 83 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECC
Confidence 3444444444444555566666666666555 3789999999999999 578999999999999999999999
Q ss_pred CCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813 285 NAQLQERVALK-DCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 285 ~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~ 315 (321)
++.|+.++.|. +++|+++++|++++.+..++
T Consensus 84 ~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~ 115 (155)
T cd04745 84 NALVGMNAVVMDGAVIGEESIVGAMAFVKAGT 115 (155)
T ss_pred CCEECCCCEEeCCCEECCCCEECCCCEeCCCC
Confidence 99999999885 57888888888777776544
No 32
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.63 E-value=3e-15 Score=111.15 Aligned_cols=79 Identities=51% Similarity=0.941 Sum_probs=68.3
Q ss_pred ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCc
Q 020813 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 309 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~ 309 (321)
|++++.|++++.|.+++||++|.|+++++|.+|+|++++.|++++.|.++++++++.|++++.+.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 5666777777777778889999999999999999999999999999999999999999999999999999999888875
No 33
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.61 E-value=1.1e-14 Score=125.94 Aligned_cols=105 Identities=18% Similarity=0.304 Sum_probs=82.1
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceE
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSV 281 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~~i 281 (321)
..+++++.|++++.+.+++.||++|.|+.+|.|+. .+||.+|.||++|.|. +|+|+++++||+++.+.+++
T Consensus 11 p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~v 90 (196)
T PRK13627 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCV 90 (196)
T ss_pred CccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEE
Confidence 34556666666666656666666666666666653 4788888888888885 58999999999999999999
Q ss_pred ECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813 282 ICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 282 I~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~ 315 (321)
|++++.||.++++. +++||++++|++|+.+...+
T Consensus 91 IG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 91 IGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred ECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 99999999999874 68888888888888776643
No 34
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=120.01 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=85.8
Q ss_pred cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEE
Q 020813 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSVI 282 (321)
Q Consensus 208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~~iI 282 (321)
.+.++|+|+|.|-.++.|+.++.|+++++|.... ..-.||+++.|.+||.|. .+.|+++|+||+++.|.+|.|
T Consensus 15 ~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~I 92 (176)
T COG0663 15 DPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTI 92 (176)
T ss_pred CCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEE
Confidence 3456667777666666677777777776665443 457999999999999997 568999999999999999999
Q ss_pred CCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813 283 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 283 ~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~ 315 (321)
++++.||.|++|- +|.||++++|++|+.+.+..
T Consensus 93 g~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k 126 (176)
T COG0663 93 GDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK 126 (176)
T ss_pred CCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence 9999999999775 58888888888888877654
No 35
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=4.2e-14 Score=119.14 Aligned_cols=101 Identities=18% Similarity=0.396 Sum_probs=66.7
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEece-----------EECCCCEECCCcEEe
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS-----------VVMNHVTIGDGCSIQ 278 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~s-----------iI~~~v~Ig~~~~I~ 278 (321)
+|.+.|.+++.+.+++.||++|.|++++.|. .++||++|.|+++|.|.++ .|++++.+..++.|.
T Consensus 3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~ 82 (164)
T cd04646 3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE 82 (164)
T ss_pred CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence 4444555555555555555555555555553 3578888888888888653 466777777777777
Q ss_pred ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
+++||+++.||.++.|. ++.||++++|++++.+...
T Consensus 83 ~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 83 ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 78888888888877773 5666666666666666554
No 36
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.58 E-value=4.3e-14 Score=127.51 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred ceEECCCCEECCCcEEec--------eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 245 RSVIGRHCRIGSNVKVVN--------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 245 ~svIg~~~~Ig~~~~I~~--------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
+++||++|.|+++|+|.+ ++|++++.|++++.|. +|+|++++.|++++.+. +|+||+++.|+.++.+.+.
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 356677777777776652 5666777777766663 66666666666666554 4566666666665555554
Q ss_pred eEee
Q 020813 315 SLAR 318 (321)
Q Consensus 315 ~~~~ 318 (321)
+.++
T Consensus 157 v~Ig 160 (254)
T cd03351 157 CRIG 160 (254)
T ss_pred cEEC
Confidence 4443
No 37
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.57 E-value=4.1e-14 Score=127.64 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=46.2
Q ss_pred eEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813 246 SVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 246 svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
++||++|.|++++.| .+|+|+++|.|+.++.+. +++|++++.|+.++.|. ++.||++++|++++.+..
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~ 173 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQ 173 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEee
Confidence 566677777777766 466677777777777666 67777777777777664 566677766666666654
No 38
>PLN02296 carbonate dehydratase
Probab=99.57 E-value=4.5e-14 Score=127.44 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=76.4
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEE
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSI 277 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~-----------~siI~~~v~Ig~~~~I 277 (321)
|++++.|.+++.+.+++.||++|.|..+|.|. +.+||++|.|+++|.|. +|+|+++|+||++|.|
T Consensus 55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 34444444444444455555555555555555 35899999999999985 6899999999999999
Q ss_pred eceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813 278 QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 278 ~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~ 315 (321)
.+|+|++++.||.+++|. +++|+++++|++|+.+...+
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~ 173 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT 173 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCC
Confidence 999999999999999874 67777777777777666553
No 39
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.56 E-value=1e-13 Score=128.95 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=47.0
Q ss_pred eeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-----------------
Q 020813 218 ELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ----------------- 278 (321)
Q Consensus 218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~----------------- 278 (321)
.|++++.|++++.||++|.|+.++.|+ +++||++|.|+++++|. +++|+++|.|+++|.|+
T Consensus 111 ~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i 190 (324)
T TIGR01853 111 TIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKI 190 (324)
T ss_pred EECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceec
Confidence 333333334444444444444444453 36666666666666665 67777777777777773
Q ss_pred ----ceEECCCCEECcCcEe
Q 020813 279 ----GSVICSNAQLQERVAL 294 (321)
Q Consensus 279 ----~~iI~~~~~Ig~~~~i 294 (321)
.++|++++.||++++|
T Consensus 191 ~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 191 PQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CccceEEECCCcEECCCCEE
Confidence 3677777777777766
No 40
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.56 E-value=7.5e-14 Score=125.92 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=61.7
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------------ceEECCCCEECCCcEEe--------ceEECCC
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMNH 268 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------------~svIg~~~~Ig~~~~I~--------~siI~~~ 268 (321)
+..|++++.|++++.+.+++.||++|.|++++.|+ +++||++|.|++++.|. +++|+++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 33344444444444444445555555555555554 46677777777777775 3466666
Q ss_pred CEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeE
Q 020813 269 VTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESL 316 (321)
Q Consensus 269 v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~ 316 (321)
+.|++++.|. +|+|++++.|++++.+. +|+||++++|+.++.+.+.+.
T Consensus 108 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~ 157 (254)
T TIGR01852 108 NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVR 157 (254)
T ss_pred CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcE
Confidence 6666666663 66666666666666554 455555555555555544433
No 41
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.56 E-value=5.5e-14 Score=127.74 Aligned_cols=112 Identities=21% Similarity=0.417 Sum_probs=66.3
Q ss_pred CCeeeCCCCeeCCCcEECCCCEECCCCEECCCC------eEec-eEECCCCEECCCcEEe--------------------
Q 020813 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC------SVKR-SVIGRHCRIGSNVKVV-------------------- 261 (321)
Q Consensus 209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~------~I~~-svIg~~~~Ig~~~~I~-------------------- 261 (321)
++.+|.+++.|++++.|+++++||++|.||++| +|.+ +.||.+|.|++|+.|+
T Consensus 122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g 201 (338)
T COG1044 122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG 201 (338)
T ss_pred CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence 344444444444444444444444444444444 4444 6677777777777664
Q ss_pred ceEECCCCEECCCcEEe-c----eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeEeeec
Q 020813 262 NSVVMNHVTIGDGCSIQ-G----SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESLARKE 320 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~-~----~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~~~~~ 320 (321)
+.+|+++|.||.|++|. + ++|+++++|..-+.|. +|.||++|.|..++-|.+.+-++++
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~ 266 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKY 266 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCe
Confidence 24677777777777775 3 5666666666666664 6777777777776666666555543
No 42
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.56 E-value=8.4e-14 Score=120.39 Aligned_cols=92 Identities=21% Similarity=0.372 Sum_probs=58.7
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL 288 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~I 288 (321)
...|++++.|++.+.|++++.||++|.|++++.|+++.||++|.|++++.|.+++|++++.|++++.|. +++|++++.|
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~I 94 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHI 94 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEE
Confidence 445555555666666666666666666666666666677777777777777777777777777766665 5666666666
Q ss_pred CcCcEecCeEECC
Q 020813 289 QERVALKDCQVGQ 301 (321)
Q Consensus 289 g~~~~i~~~iIg~ 301 (321)
++++.+++++|++
T Consensus 95 g~~~~i~~s~ig~ 107 (193)
T cd03353 95 GNFVEIKKSTIGE 107 (193)
T ss_pred CCcEEEecceEcC
Confidence 6655554443333
No 43
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.55 E-value=5.7e-14 Score=103.56 Aligned_cols=76 Identities=39% Similarity=0.691 Sum_probs=58.3
Q ss_pred ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-eEECCCcEEc
Q 020813 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYVVS 306 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-~iIg~~~~V~ 306 (321)
|++++.|++++.|.+++||++|.|++++.|.+|+|+++++|++++.|.+++|++++.|++++.+.+ +++++++.|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 455666666666666778888888888888888888888888888888888888888888777765 7777776665
No 44
>PLN02472 uncharacterized protein
Probab=99.54 E-value=1.2e-13 Score=123.13 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=71.4
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEe
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-----------~siI~~~v~Ig~~~~I~ 278 (321)
..+|.|++.+..++.|++++.|+.+++|.... ...+||++|.|+++|.|. +++|+++|+||++|.|.
T Consensus 65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~ 142 (246)
T PLN02472 65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR 142 (246)
T ss_pred CCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC
Confidence 44455555555444455555554444442210 125889999999999884 58999999999999999
Q ss_pred ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813 279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
+|+|++++.||.+++|. +++|+++++|++++.+..
T Consensus 143 ~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 143 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred CeEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 99999999999998774 666666666666665554
No 45
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=8.6e-14 Score=126.50 Aligned_cols=106 Identities=23% Similarity=0.493 Sum_probs=59.8
Q ss_pred ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-------ceEECCCCEECCCcEEe
Q 020813 207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------NSVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-------~siI~~~v~Ig~~~~I~ 278 (321)
+.+...|+|+|.+++++.++++++|++++.||+++.|.. ++||++|+||+++.|. ++.|+++|.|++|+.|+
T Consensus 102 I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG 181 (338)
T COG1044 102 IHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIG 181 (338)
T ss_pred cCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEc
Confidence 344566667666666666666666666666666665553 5555555555555543 24555555555555553
Q ss_pred --------------------ceEECCCCEECcCcEec-C----eEECCCcEEcCCcEEc
Q 020813 279 --------------------GSVICSNAQLQERVALK-D----CQVGQGYVVSAGCEYK 312 (321)
Q Consensus 279 --------------------~~iI~~~~~Ig~~~~i~-~----~iIg~~~~V~~~~~i~ 312 (321)
+.+|+++|.||+++.|+ + ++|++++.|...++|.
T Consensus 182 ~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIa 240 (338)
T COG1044 182 ADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIG 240 (338)
T ss_pred cCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEc
Confidence 15667777777777664 2 4444444444433333
No 46
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.54 E-value=1.1e-13 Score=115.32 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCC
Q 020813 215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSN 285 (321)
Q Consensus 215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~-----siI~~~v~Ig~~~~I~~~iI~~~ 285 (321)
+++.|++++.|.+++.||+++.|++++.|. +++||++|.|++++.|.. ++|++++.|+.+|.|.+++|+++
T Consensus 4 ~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred CCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 344444444444445555555555555554 358999999999999987 58999999999999999999999
Q ss_pred CEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813 286 AQLQERVALK-DCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 286 ~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~ 315 (321)
+.|+.++.+. +++|++++.|++++.+..++
T Consensus 84 ~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~ 114 (153)
T cd04645 84 CLIGMGAIILDGAVIGKGSIVAAGSLVPPGK 114 (153)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEECCCC
Confidence 9999888886 67777777777777666543
No 47
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.54 E-value=2.5e-13 Score=122.53 Aligned_cols=102 Identities=23% Similarity=0.370 Sum_probs=58.2
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEe
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-------------~siI~~~v~Ig~~~~I~ 278 (321)
|++++.|++++.+++++.|++++.|+++|.|.. ++||++|.|++++.|. +++|++++.|+++|.|.
T Consensus 13 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 13 IGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTIN 92 (254)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEEC
Confidence 333333444444444444444445555554443 6677777777777775 46677777777777775
Q ss_pred --------ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcCC
Q 020813 279 --------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 279 --------~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~ 314 (321)
.++||+++.|++++.| ++|.||+++.|++++.+.+.
T Consensus 93 ~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~ 137 (254)
T TIGR01852 93 RGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH 137 (254)
T ss_pred CcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC
Confidence 3466666666666666 35555555555555444443
No 48
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.54 E-value=1.6e-13 Score=114.49 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCC
Q 020813 215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSN 285 (321)
Q Consensus 215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~~-----siI~~~v~Ig~~~~I~~~iI~~~ 285 (321)
+++.+.+++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++|++++.|++++.+.+++|+++
T Consensus 5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 84 (154)
T cd04650 5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY 84 (154)
T ss_pred CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence 3344444444444455555555555555554 48999999999999875 78999999999999999999999
Q ss_pred CEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813 286 AQLQERVALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 286 ~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
+.|+.++.+. +++|+++++|++++.+..
T Consensus 85 ~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 85 VIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 9999998874 677788777777776664
No 49
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.53 E-value=2.9e-13 Score=127.22 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=15.6
Q ss_pred eEECCCCEECCCcEEec-eEECCCCEECCCcEE
Q 020813 246 SVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSI 277 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I 277 (321)
+.||++|.|+++++|.+ +.|+++|+|+++|.|
T Consensus 149 ~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 149 VKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred cEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 34444444444444432 335555555555555
No 50
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.52 E-value=1.1e-13 Score=102.71 Aligned_cols=79 Identities=18% Similarity=0.445 Sum_probs=73.0
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCc
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~ 292 (321)
|++++.|++++.+. ++.|+++|.|++++.|++|+|++++.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 56777888888885 69999999999999999999999999999999999999999999999999999999999999764
No 51
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.52 E-value=2.8e-13 Score=114.55 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=51.8
Q ss_pred EECCCCEECCCCeEe-----ceEECCCCEECCCcEEec-eEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCc
Q 020813 230 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGY 303 (321)
Q Consensus 230 ~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~ 303 (321)
.||++|.|++++.|. ++.||++|.|+.++.|.. ++|+++|.||.+|.|.++.|++++.|++++.|.++.|++++
T Consensus 44 ~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~ 123 (167)
T cd00710 44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPGR 123 (167)
T ss_pred EECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCCC
Confidence 344444444444442 244566666666666653 66666666666666666666666666666666666666666
Q ss_pred EEcCCcEEcCCe
Q 020813 304 VVSAGCEYKGES 315 (321)
Q Consensus 304 ~V~~~~~i~~~~ 315 (321)
+|++++.+...+
T Consensus 124 ~v~~~~~v~~~~ 135 (167)
T cd00710 124 YVPAGAVITSQT 135 (167)
T ss_pred EECCCCEEcCCC
Confidence 666666665443
No 52
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.52 E-value=1.1e-13 Score=107.69 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=45.9
Q ss_pred eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec
Q 020813 218 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK 295 (321)
Q Consensus 218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 295 (321)
.|++++.+ .+++||++|.|+ ++.|.+|+|+++|.|++++.|.+|+|++++.||+++.+.+|+|++++.|++++.+.
T Consensus 3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~ 78 (104)
T cd04651 3 YIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG 78 (104)
T ss_pred eecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEEC
Confidence 44555555 345566666665 56666666666666666666666666666666666666666666666666555554
No 53
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.52 E-value=2e-13 Score=123.58 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=8.1
Q ss_pred eEECCCCEECCCcEEe
Q 020813 263 SVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~ 278 (321)
++|++++.|+++|+|.
T Consensus 81 v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 81 LVIGDNNTIREFVTIN 96 (262)
T ss_pred EEECCCCEECCCeEEe
Confidence 4455555555555553
No 54
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.50 E-value=3.5e-13 Score=117.40 Aligned_cols=100 Identities=14% Similarity=0.312 Sum_probs=81.8
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe---------------
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------------- 278 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~--------------- 278 (321)
.+.+.|++++.+ .++.||+++.|+++|.|.+++||++|.|++++.+.+++|+++|.|++++.|.
T Consensus 6 ~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~ 84 (204)
T TIGR03308 6 SPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFT 84 (204)
T ss_pred CCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccc
Confidence 455566666666 3578888888888888888999999999999999999999999999998874
Q ss_pred -----------------------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 279 -----------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 279 -----------------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
+++|++++.||.++.|. ++.||++++|++++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~ 144 (204)
T TIGR03308 85 YRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD 144 (204)
T ss_pred cccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 56788888888888775 7888888888888886653
No 55
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.50 E-value=3.2e-13 Score=125.63 Aligned_cols=71 Identities=20% Similarity=0.447 Sum_probs=35.2
Q ss_pred EECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe---------------------ceEECCCCEECCCcEEe---
Q 020813 224 TVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV---------------------NSVVMNHVTIGDGCSIQ--- 278 (321)
Q Consensus 224 ~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~---------------------~siI~~~v~Ig~~~~I~--- 278 (321)
.|++++.||++|.|++++.|. +++||++|.|+++++|+ +++|+++|.||+++.|.
T Consensus 135 ~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~ 214 (324)
T TIGR01853 135 VIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGA 214 (324)
T ss_pred EECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCC
Confidence 333333344444444444444 35566666666666653 25566666666666552
Q ss_pred --ceEECCCCEECcCcEe
Q 020813 279 --GSVICSNAQLQERVAL 294 (321)
Q Consensus 279 --~~iI~~~~~Ig~~~~i 294 (321)
+++|++++.|+..+.|
T Consensus 215 ~~~t~Ig~~~~I~n~v~I 232 (324)
T TIGR01853 215 FDDTIIGEGTKIDNLVQI 232 (324)
T ss_pred cCcceecCCcEEccCcEE
Confidence 2344444444444433
No 56
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.50 E-value=6e-13 Score=112.48 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=78.1
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEe-----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEe-ceE
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSV 281 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~-~~i 281 (321)
|++++.|++++.+.+++.||++|.|++++.|. ++.||++|.|++++.|. ++.|++++.|+.++.|. .++
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 34444444444444444455555555555443 47899999999999995 67899999999999998 599
Q ss_pred ECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813 282 ICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 282 I~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~ 313 (321)
|++++.||.++.|.++.||+++.|++++.+.+
T Consensus 85 Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 85 IGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ECCCCEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 99999999999999999999999999888864
No 57
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=2.7e-13 Score=100.29 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=42.5
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEEC
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQ 289 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~-~iI~~~~~Ig 289 (321)
++|++.|++++.++++++|+++|.|+++|.|++|+|++++.|++++.|.+|++++++.|++++.+.. ++++++++|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 3455555555555555555555555555555555555555555555555555555555555555543 4444444443
No 58
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.50 E-value=2.2e-13 Score=100.15 Aligned_cols=76 Identities=36% Similarity=0.716 Sum_probs=59.4
Q ss_pred ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEc
Q 020813 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVS 306 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~ 306 (321)
||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|+.++.+. +++|++++.|+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 56666677777777788999999999999999999999999999999999999999888665554 45555554443
No 59
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.49 E-value=3.7e-13 Score=130.90 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=15.4
Q ss_pred eEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
++|+++++||.++.+. ++.||++++|++++.+.
T Consensus 381 ~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~ 414 (446)
T PRK14353 381 TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVIT 414 (446)
T ss_pred cEECCCcEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 4444555555444433 44444444444444443
No 60
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=4.8e-13 Score=121.11 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=46.4
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------------ceEECCCCEECCCcEEec--------eEECCCC
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVVMNHV 269 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------------~svIg~~~~Ig~~~~I~~--------siI~~~v 269 (321)
..|..++.|++++.|.+++.||++|.|++++.|+ .++||++|.|+++++|.+ +.|++++
T Consensus 33 v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~ 112 (262)
T PRK05289 33 VVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNN 112 (262)
T ss_pred CEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCce
Confidence 3333333333444444444455555555555554 266777777777777753 3566666
Q ss_pred EECCCcEEe-ceEECCCCEECcCcEe
Q 020813 270 TIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 270 ~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
.|+.++.|. +|+|++++.++.++.+
T Consensus 113 ~I~~~~~I~h~~~IG~~v~i~~~~~i 138 (262)
T PRK05289 113 LLMAYVHVAHDCVVGNHVILANNATL 138 (262)
T ss_pred EECCCCEECCeEEECCCeEECCcccc
Confidence 666666665 5566555555555443
No 61
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.47 E-value=6.2e-13 Score=125.02 Aligned_cols=16 Identities=6% Similarity=-0.103 Sum_probs=11.7
Q ss_pred CCccceEEeEeHHHHH
Q 020813 71 DLMDAHMYAFNRSVLQ 86 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~ 86 (321)
+...+++|+++++...
T Consensus 51 ~~~~A~a~Iv~~d~~~ 66 (343)
T PRK00892 51 ATTKAGAVIVSPDDAE 66 (343)
T ss_pred hccCCeEEEechhhhh
Confidence 3568888999888643
No 62
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=5.5e-13 Score=98.25 Aligned_cols=77 Identities=19% Similarity=0.478 Sum_probs=70.0
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEECc
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQE 290 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~-~iI~~~~~Ig~ 290 (321)
|++++.|++++.+.+ +.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 567788888888876 999999999999999999999999999999999999999999999999986 99988888763
No 63
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.46 E-value=1.5e-12 Score=117.08 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=7.0
Q ss_pred EECCCCEECCCcEE
Q 020813 247 VIGRHCRIGSNVKV 260 (321)
Q Consensus 247 vIg~~~~Ig~~~~I 260 (321)
.||++|.|+++++|
T Consensus 79 ~IG~~~~I~e~vtI 92 (255)
T PRK12461 79 EIGDRNVIREGVTI 92 (255)
T ss_pred EECCceEECCccEE
Confidence 44555555555544
No 64
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.45 E-value=4.1e-12 Score=109.79 Aligned_cols=127 Identities=19% Similarity=0.307 Sum_probs=79.8
Q ss_pred ccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEE
Q 020813 175 SKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI 254 (321)
Q Consensus 175 ~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~I 254 (321)
..++..++..+...++...+..... .....+++.+.+++++.+++++.|+++++|+++ ++||++|.|
T Consensus 60 ~~~iiai~~~~~~~~i~~~l~~~g~--------~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~-----~~ig~~~~i 126 (201)
T TIGR03570 60 VDLVVAIGDNKLRRRLFEKLKAKGY--------RFATLIHPSAIVSPSASIGEGTVIMAGAVINPD-----VRIGDNVII 126 (201)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCC--------cceEEecCCeEECCCCEECCCCEECCCCEECCC-----CEECCCcEE
Confidence 4456666655554444443322211 112344555555555555555555555555544 366666777
Q ss_pred CCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 255 GSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 255 g~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
++++.|. ++.|++++.|+.++.|. +++|++++.|++++++. ++.|+++++|++++.+.++
T Consensus 127 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~ 189 (201)
T TIGR03570 127 NTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD 189 (201)
T ss_pred CCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc
Confidence 6666665 56777788888888877 78888888888887774 6788888888888877653
No 65
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.44 E-value=1.8e-12 Score=112.14 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=32.0
Q ss_pred EECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCC
Q 020813 230 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNA 286 (321)
Q Consensus 230 ~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~ 286 (321)
.|+++|.|++++.|.+++|++++.|++++.|. +++|++++.|++++.+.+++|++++
T Consensus 52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~ 109 (193)
T cd03353 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS 109 (193)
T ss_pred EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCC
Confidence 45555555555555566666666666666665 4555555555555554444443333
No 66
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.44 E-value=1.5e-12 Score=96.34 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=63.1
Q ss_pred CCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-eEECCCcE
Q 020813 226 GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYV 304 (321)
Q Consensus 226 ~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-~iIg~~~~ 304 (321)
++++.|++++.|+++ ++||++|.|+++++|.+|+++++++|++++.|.++++++++.|++++.+.+ ++||+++.
T Consensus 3 ~~~~~I~~~~~i~~~-----~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 3 DPSAKIGKTAKIGPN-----VVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCCCEECCCCEECCC-----CEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence 344455555555444 589999999999999999999999999999999999999999999988875 77777777
Q ss_pred Ec
Q 020813 305 VS 306 (321)
Q Consensus 305 V~ 306 (321)
|+
T Consensus 78 i~ 79 (80)
T cd05824 78 IK 79 (80)
T ss_pred EC
Confidence 65
No 67
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.44 E-value=8.6e-13 Score=102.69 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=75.7
Q ss_pred CEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 235 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 235 ~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
+.|++++.|.+|+||++|.|+ ++.|.+|+||+++.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.++
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 567778888889999999999 9999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 020813 315 S 315 (321)
Q Consensus 315 ~ 315 (321)
.
T Consensus 81 ~ 81 (104)
T cd04651 81 P 81 (104)
T ss_pred c
Confidence 5
No 68
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.43 E-value=4.2e-12 Score=104.01 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=14.3
Q ss_pred eEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
++|++++.|++++.|. ++.||++++|++++.+.
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~ 109 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLT 109 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEc
Confidence 3444444444444442 44444444444444444
No 69
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.43 E-value=5.1e-12 Score=105.45 Aligned_cols=96 Identities=15% Similarity=0.324 Sum_probs=71.8
Q ss_pred CeeeCCCCeeCCCcEECC---CCEECCCCEECCCCeE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ce
Q 020813 210 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS 280 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I-----~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~ 280 (321)
+..|.+++.|++++.|.+ ++.||++|.|+++|.| .+++||++|.|++++.+.+++|++++.||.++.|. ++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~ 97 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGA 97 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCC
Confidence 344555555555555543 3667888888888888 56899999999999999999999999999999987 58
Q ss_pred EECCCCEECcCcEec-CeEECCCcEE
Q 020813 281 VICSNAQLQERVALK-DCQVGQGYVV 305 (321)
Q Consensus 281 iI~~~~~Ig~~~~i~-~~iIg~~~~V 305 (321)
+|++++.|++++.+. +..|++++++
T Consensus 98 ~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 98 VIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred EECCCCEECCCCEeCCCCEeCCCCEE
Confidence 888888888666554 3444544443
No 70
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.43 E-value=4.5e-12 Score=106.80 Aligned_cols=100 Identities=12% Similarity=0.186 Sum_probs=66.6
Q ss_pred CeeeCCCCeeCCCcEEC---CCCEECCCCEECCCCeEec-----------eEECCCCEECCCcEEeceEECCCCEECCCc
Q 020813 210 NNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVKR-----------SVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 275 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~---~~~~Ig~~~~I~~~~~I~~-----------svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~ 275 (321)
+..|++.+.|++++.+. +++.||++|.|+++|.|.+ +.||+++.|+.++.|.+++|+++|.||.+|
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a 96 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS 96 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCC
Confidence 34455555555555552 3456677777777777754 357888888888888888888888888888
Q ss_pred EEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 276 SIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 276 ~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
.|. +++|++++.||++++| .+++.|++++.+.+.
T Consensus 97 ~I~~gv~Ig~~~~IgagsvV-----~~~~~i~~~~vi~g~ 131 (164)
T cd04646 97 FVGKNVIITDGCIIGAGCKL-----PSSEILPENTVIYGA 131 (164)
T ss_pred EECCCCEECCCCEEeCCeEE-----CCCcEECCCeEEeCC
Confidence 885 6777777777755544 444555555554443
No 71
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.43 E-value=2.7e-12 Score=115.52 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=23.4
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
|.|+++|.|+.++.+. +++|++++.|+.++.+. ++.||++++|++++.+.
T Consensus 120 ~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~ 171 (255)
T PRK12461 120 CQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRIS 171 (255)
T ss_pred CEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEe
Confidence 3344444444444433 44555555555554443 45555555555555443
No 72
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.43 E-value=7.3e-12 Score=107.28 Aligned_cols=99 Identities=22% Similarity=0.439 Sum_probs=63.3
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL 288 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~I 288 (321)
..+++.+.+..++.++.++.|+++++|++++ .||++|.|++++.|. ++.|++++.|+.++.+. +++|++++.|
T Consensus 85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 159 (197)
T cd03360 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDA-----RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI 159 (197)
T ss_pred eEECCCeEECCCCEECCCCEEcCCCEECCCC-----EECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEE
Confidence 3455555555555555555555555555544 455555555555553 45677777777777775 5777777777
Q ss_pred CcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813 289 QERVALK-DCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 289 g~~~~i~-~~iIg~~~~V~~~~~i~~~ 314 (321)
+.++.+. ++.||++++|++++.+.+.
T Consensus 160 g~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 160 GAGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred CCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 7777765 5777777777777776553
No 73
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.42 E-value=2.1e-12 Score=102.65 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCc
Q 020813 214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~ 292 (321)
++++.|++++.+++++.|+++|.|+.++.|. +++||++|.|++++.+.++.+ .+..+..++.+++++|++++.|++++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCC
Confidence 3455666666666677777777777777774 489999999999998887644 34444567778888888888888888
Q ss_pred Eec-CeEECCCcEEcCCcEEcC
Q 020813 293 ALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 293 ~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
.+. ++.|++++.|++++.+..
T Consensus 81 ~v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 81 TILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred EEeCCcEECCCCEEccCCEEeC
Confidence 775 588888888888877765
No 74
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.42 E-value=6e-13 Score=129.56 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=17.6
Q ss_pred CCCccceEEeEeHHHHHHHHh
Q 020813 70 ADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~ 90 (321)
++++++|+|+|++++|.++++
T Consensus 166 ~~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 166 NNRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred CcEEEEEEEEEEHHHHHHHHh
Confidence 568899999999988877764
No 75
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.1e-13 Score=129.57 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=75.0
Q ss_pred CEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcC
Q 020813 229 CMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 307 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~ 307 (321)
.+-++.+++...|.++. .+||.++.||.|+.|.||+||.||.||.||+|.+|.|++||+||+||+|++|+|++++.|++
T Consensus 316 IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~ 395 (673)
T KOG1461|consen 316 IYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGE 395 (673)
T ss_pred cccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCC
Confidence 33344444444444443 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEcCCeEe
Q 020813 308 GCEYKGESLA 317 (321)
Q Consensus 308 ~~~i~~~~~~ 317 (321)
|+.++.+.++
T Consensus 396 ~~~l~~g~vl 405 (673)
T KOG1461|consen 396 GAILKPGSVL 405 (673)
T ss_pred CcccCCCcEE
Confidence 8888765544
No 76
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.42 E-value=2.7e-12 Score=110.61 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=60.1
Q ss_pred CEECCCCEECCCCeE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCC
Q 020813 229 CMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG 302 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I-----~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~ 302 (321)
++||++|.|+++|.| .+|+||++|.|++++.|.+|+|++++.||.++.|. +++|++++.|++++ +|.++
T Consensus 48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags-----~V~~~ 122 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASA-----FVKAG 122 (192)
T ss_pred eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCC-----EECCC
Confidence 455678888888888 35899999999999999999999999999998886 67777777777554 44444
Q ss_pred cEEcCCcEEc
Q 020813 303 YVVSAGCEYK 312 (321)
Q Consensus 303 ~~V~~~~~i~ 312 (321)
+.|++++.+.
T Consensus 123 ~~ip~~~l~~ 132 (192)
T TIGR02287 123 AEMPAQYLVV 132 (192)
T ss_pred CEECCCeEEE
Confidence 4555544433
No 77
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.40 E-value=1.8e-12 Score=126.12 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=25.5
Q ss_pred CEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec
Q 020813 229 CMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG 279 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~ 279 (321)
+.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+
T Consensus 297 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~ 348 (451)
T TIGR01173 297 SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKN 348 (451)
T ss_pred eEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecC
Confidence 344445555555555555555555555555554 345555555544444433
No 78
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.39 E-value=8e-12 Score=102.37 Aligned_cols=93 Identities=20% Similarity=0.343 Sum_probs=49.8
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEec---------eEECCCCEECCCcEEe-
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ- 278 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~- 278 (321)
++.|.+++.|.+.+.+..++.|++++.|+.++.|.+ ++||++|.|++++.|.+ ++|++++.|++++.|.
T Consensus 13 ~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 13 GAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE 92 (139)
T ss_pred CCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence 334444444444444444444455555555554433 56666666666666642 4566666666666664
Q ss_pred ceEECCCCEECcCcEec-CeEECCC
Q 020813 279 GSVICSNAQLQERVALK-DCQVGQG 302 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~-~~iIg~~ 302 (321)
++.|++++.|++++.|. +..|+++
T Consensus 93 gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 93 GVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred CCEECCCCEEcCCCEEcCCeEeccc
Confidence 56666666666555553 3444444
No 79
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.39 E-value=5.3e-12 Score=112.73 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=16.0
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813 263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
++|+++|.||.+|.|. +++|++++.||+|++|
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 4455555555555553 4445555555544444
No 80
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.39 E-value=1.4e-11 Score=107.45 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=3.8
Q ss_pred eEECCCCEEC
Q 020813 280 SVICSNAQLQ 289 (321)
Q Consensus 280 ~iI~~~~~Ig 289 (321)
+.|++++.|+
T Consensus 133 ~~ig~~~~i~ 142 (205)
T cd03352 133 VRIGENCLIA 142 (205)
T ss_pred CEECCCCEEC
Confidence 3333333333
No 81
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.38 E-value=7.7e-12 Score=111.70 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=36.7
Q ss_pred CCCCEECCCCeEec-eEECCCCEECCCcEEec-eEEC--------CCCEECCCcEEe-ceEECCCCEECcCcEec-CeEE
Q 020813 232 GEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN-SVVM--------NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQV 299 (321)
Q Consensus 232 g~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~-siI~--------~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iI 299 (321)
..++.||++|.|.. ++||++|.||++|.|.. +.|+ .+|.||++|.|+ +|+|.+++.||++++|. +++|
T Consensus 127 niga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 127 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 34455555555554 55566666666555542 2332 345666666665 55566666655444443 3444
Q ss_pred CCC
Q 020813 300 GQG 302 (321)
Q Consensus 300 g~~ 302 (321)
+++
T Consensus 207 ~~~ 209 (269)
T TIGR00965 207 GQS 209 (269)
T ss_pred CCC
Confidence 333
No 82
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.38 E-value=1.3e-11 Score=102.93 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred eeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceE
Q 020813 211 NIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSV 281 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~i 281 (321)
..+++++.|++++.|.+. +.||++|.|+++|.|.. ++||+++.|++++.+.+++|++++.|+.++.+. +++
T Consensus 19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ 98 (154)
T cd04650 19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAK 98 (154)
T ss_pred EEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCE
Confidence 344444444444444333 47888888888888874 799999999999999999999999999999986 788
Q ss_pred ECCCCEECcCcEec-CeEECCCcE
Q 020813 282 ICSNAQLQERVALK-DCQVGQGYV 304 (321)
Q Consensus 282 I~~~~~Ig~~~~i~-~~iIg~~~~ 304 (321)
|++++.+++++.+. +..++++++
T Consensus 99 Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 99 IGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred ECCCCEECCCCEECCCcEeCCCCE
Confidence 88888888776654 355555555
No 83
>PLN02296 carbonate dehydratase
Probab=99.38 E-value=1e-11 Score=112.18 Aligned_cols=92 Identities=17% Similarity=0.337 Sum_probs=62.2
Q ss_pred eCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----------ceEECCCCEECCCcEEeceEECCCCEECCCcEEe
Q 020813 213 IHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~ 278 (321)
|++++.|..++.|.++ +.||++|.|+++|.|. +++||++|.||.+|.|.+|+|+++|.||.++.|.
T Consensus 73 IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~ 152 (269)
T PLN02296 73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLL 152 (269)
T ss_pred ECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEEC
Confidence 3344444444444332 2677788888888774 5789999999999998888888888888888775
Q ss_pred -ceEECCCCEECcCcEec-CeEECCCcE
Q 020813 279 -GSVICSNAQLQERVALK-DCQVGQGYV 304 (321)
Q Consensus 279 -~~iI~~~~~Ig~~~~i~-~~iIg~~~~ 304 (321)
+++|++++.|++++.|. +..|.++++
T Consensus 153 ~gv~Ig~~a~IgagSvV~~~~~I~~~~~ 180 (269)
T PLN02296 153 DGVVVEKHAMVAAGALVRQNTRIPSGEV 180 (269)
T ss_pred CCeEECCCCEECCCCEEecCCEeCCCeE
Confidence 67777777777655543 333444443
No 84
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.37 E-value=9.2e-12 Score=101.09 Aligned_cols=96 Identities=22% Similarity=0.392 Sum_probs=64.0
Q ss_pred CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----c-eEECCCCEECCCcEEeceEECCC----CEECCCcEEe-
Q 020813 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----R-SVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ- 278 (321)
Q Consensus 209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~-svIg~~~~Ig~~~~I~~siI~~~----v~Ig~~~~I~- 278 (321)
+...+.+++.|++++.|.++++|..++.|+++|.|. . ++||++|.||+++.|. +.+..+ +.||++|+|+
T Consensus 6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~ 84 (147)
T cd04649 6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGA 84 (147)
T ss_pred CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECC
Confidence 345667778888888888888888888888888776 4 7888888888888887 445455 5555555555
Q ss_pred ceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813 279 GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~ 312 (321)
++.| ++.|| ++|+||++++|.+++.+.
T Consensus 85 ga~I--gv~IG-----~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 85 NSGI--GISLG-----DNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred CCEE--eEEEC-----CCCEECCCCEEeCCeEEE
Confidence 4444 34444 345555555555555543
No 85
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.37 E-value=5.2e-12 Score=92.80 Aligned_cols=76 Identities=25% Similarity=0.483 Sum_probs=63.9
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEEC
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQ 289 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig 289 (321)
|.+++.|++++.+. ++.|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|++++.|. ++++++++.||
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 46677778888775 688888888888888888999999999999999999999999999988887 67777777766
No 86
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.37 E-value=1.3e-11 Score=103.76 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=32.2
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV 292 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~ 292 (321)
++||+++.|++++.+.+++|++++.||+++.|+ +++|++++.|++++
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~ 120 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGT 120 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCC
Confidence 467777777777777777777777777777665 56666666666443
No 87
>PLN02472 uncharacterized protein
Probab=99.37 E-value=1.2e-11 Score=110.44 Aligned_cols=96 Identities=16% Similarity=0.277 Sum_probs=61.7
Q ss_pred eeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----------ceEECCCCEECCCcEEeceEECCCCEECCCcE
Q 020813 211 NIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS 276 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~ 276 (321)
..|.+.+.|..++.+..+ ..||+++.|+++|.|. +++||++|.||++|.|.+|+|+++|.||.+|.
T Consensus 78 V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~sv 157 (246)
T PLN02472 78 VTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSI 157 (246)
T ss_pred EEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCE
Confidence 334444444444433222 4567777777777773 48999999999999999888888888888877
Q ss_pred Ee-ceEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813 277 IQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 277 I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i 311 (321)
|. +++|++++.|++ +++|.++..|+++...
T Consensus 158 I~~gavIg~~~~Ig~-----gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 158 LMEGSLVETHSILEA-----GSVLPPGRRIPTGELW 188 (246)
T ss_pred ECCCCEECCCCEECC-----CCEECCCCEeCCCCEE
Confidence 65 566666555553 3444444444444443
No 88
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=3.8e-12 Score=124.21 Aligned_cols=63 Identities=14% Similarity=0.415 Sum_probs=28.2
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCc
Q 020813 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGC 275 (321)
Q Consensus 212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~ 275 (321)
.|++++.|++++.| .++.|+++|.|++++.|.+|+||++|.|++++.|. +++|++++.||+++
T Consensus 285 ~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~ 348 (456)
T PRK09451 285 TLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFV 348 (456)
T ss_pred EECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccce
Confidence 33444444444444 23444444444444444444445555555444443 34444444444433
No 89
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.36 E-value=6.1e-12 Score=113.24 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=38.9
Q ss_pred CEECCCCEECCCCeEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-C
Q 020813 229 CMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-D 296 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~ 296 (321)
+.|+++|.|+.++.|++ ++||++|.|+.++.|. +++|+++|.||.+|.|. +++|++++.|++++.|. +
T Consensus 133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 33444444444444443 3555555555555443 25566666666666663 66666666666666553 4
Q ss_pred eEECC
Q 020813 297 CQVGQ 301 (321)
Q Consensus 297 ~iIg~ 301 (321)
+.|++
T Consensus 213 t~I~~ 217 (272)
T PRK11830 213 TKIYD 217 (272)
T ss_pred eEECc
Confidence 44444
No 90
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.36 E-value=8.2e-12 Score=107.93 Aligned_cols=112 Identities=24% Similarity=0.452 Sum_probs=83.1
Q ss_pred ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------ceEECCCCEECCCcEEe-------------ceEEC
Q 020813 207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------RSVIGRHCRIGSNVKVV-------------NSVVM 266 (321)
Q Consensus 207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------~svIg~~~~Ig~~~~I~-------------~siI~ 266 (321)
+.+.+.|+|+|.|++++.||+-|+||+++.|++++.|+ .+.||++++|-+.+.|+ ..+|+
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG 85 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG 85 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence 34566778888888888888888888887777777665 25566666666666664 24788
Q ss_pred CCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeEee
Q 020813 267 NHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESLAR 318 (321)
Q Consensus 267 ~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~~~ 318 (321)
++++|.++++|. -+.||+++.+-+++.+. +|+||+++++..++.+.+.+-++
T Consensus 86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~ig 146 (260)
T COG1043 86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVG 146 (260)
T ss_pred CCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEEC
Confidence 888888888884 26788888888888774 88888888888888888876554
No 91
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.35 E-value=1.3e-11 Score=95.43 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=64.4
Q ss_pred CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEE
Q 020813 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQL 288 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~I 288 (321)
..++++.+.|++++.+.++++|++++.|++++.|.. ++||++|.||. .|.+|+|++++.+++++.|++++|++++.|
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEE
Confidence 456667777777777777777888888877777775 77888888865 567888888888888888888888888888
Q ss_pred CcCcEec
Q 020813 289 QERVALK 295 (321)
Q Consensus 289 g~~~~i~ 295 (321)
|+++...
T Consensus 89 g~~~~~~ 95 (101)
T cd05635 89 GAGTNNS 95 (101)
T ss_pred CCCceec
Confidence 8777654
No 92
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.34 E-value=1.9e-11 Score=110.02 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=44.9
Q ss_pred EECCCCEECCCcEEec-eEECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcCCe
Q 020813 247 VIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~~ 315 (321)
.||++|.|+.++.|++ ++|+++|+|+.++.|.+ ++|+++|.||.++.| .+++||++++|++++.+...+
T Consensus 134 ~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 134 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred EECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence 4555555555555553 35666666666666543 677888888877776 467777777777776666544
Q ss_pred Ee
Q 020813 316 LA 317 (321)
Q Consensus 316 ~~ 317 (321)
.+
T Consensus 214 ~I 215 (272)
T PRK11830 214 KI 215 (272)
T ss_pred EE
Confidence 33
No 93
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=6.7e-12 Score=122.43 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=38.7
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 311 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i 311 (321)
++||++|.|+++|.|.+|+|+++|.|+++|.|.+++|++++.||+++.|. +++||+++.|+.++.+
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 45666666666666666666666666666666666666666666665554 5555555555555444
No 94
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=7.7e-12 Score=122.83 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=43.5
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec--------CeEECCCcEEcCCcEEcCCeEe
Q 020813 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESLA 317 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~--------~~iIg~~~~V~~~~~i~~~~~~ 317 (321)
++||++|.|++++.|.+++|++++.+|+.+.+++++|++++.||+++++. .+.||+++.|+.++.+.+...+
T Consensus 341 ~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~I 420 (481)
T PRK14358 341 TVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVV 420 (481)
T ss_pred cEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEE
Confidence 44444444444444444445555555555556678888999999888774 3567777666666655554443
No 95
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.33 E-value=2.8e-11 Score=101.70 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=46.8
Q ss_pred eEECCCCEECCCcEEec-------------eEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813 246 SVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY 311 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~-------------siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i 311 (321)
+.||++|.|++++.|.. ++|++++.|++++.+.+++|++++.|++++.|. +|+|++++.|++++.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V 122 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV 122 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence 46777777777776653 468888999999888888888888877777764 4555555555554444
Q ss_pred cC
Q 020813 312 KG 313 (321)
Q Consensus 312 ~~ 313 (321)
..
T Consensus 123 ~~ 124 (161)
T cd03359 123 PP 124 (161)
T ss_pred CC
Confidence 43
No 96
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=120.65 Aligned_cols=86 Identities=15% Similarity=0.290 Sum_probs=69.6
Q ss_pred ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCC
Q 020813 225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQG 302 (321)
Q Consensus 225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~ 302 (321)
+++++.|++++.|+++|.|.. ++||++|.|+++|+|.+|+|+++|+|+++|.|.+++|++++.||+++.+. ++.|+++
T Consensus 265 i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~ 344 (459)
T PRK14355 265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH 344 (459)
T ss_pred ECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC
Confidence 444444555555555555543 69999999999999999999999999999999999999999999999886 7788888
Q ss_pred cEEcCCcE
Q 020813 303 YVVSAGCE 310 (321)
Q Consensus 303 ~~V~~~~~ 310 (321)
++|+.++.
T Consensus 345 ~~ig~~~~ 352 (459)
T PRK14355 345 VKIGNFVE 352 (459)
T ss_pred CEECCCcc
Confidence 87776654
No 97
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=9.3e-12 Score=121.18 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=65.7
Q ss_pred eeEEEEecCccc--eeeccCHHHHHHHchhhcc--------cccc-CCCc-ccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813 166 KCCVYIASNSKY--CVRLNSIQAFMDINRDVIG--------EANH-LSGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGE 233 (321)
Q Consensus 166 ~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~--------~~~~-~~~~-~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~ 233 (321)
++.+| ...+| |..+++++++..+...+.. .... +.+. .++..++.|++++.|++++.|++++.||+
T Consensus 201 ~v~~~--~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~ 278 (448)
T PRK14357 201 KVRVV--KTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGE 278 (448)
T ss_pred heeEE--ecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECC
Confidence 34555 34567 5566798777665433211 0001 1110 12222333334444444444444555566
Q ss_pred CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813 234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
+|.|+++|.|.+|+||++|.|. .+.+.+|+|++++.||+++.|. +++|+++++|++++.+
T Consensus 279 ~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 279 DCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI 339 (448)
T ss_pred CcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee
Confidence 6666666666666666666663 3455566666666666666664 4666666666655544
No 98
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=119.57 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=30.1
Q ss_pred EECCCcEEeceEECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 253 RIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 253 ~Ig~~~~I~~siI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
+||+++.|.+|+|+++|.||.++.+. .++||+++.||.++.|. ++.||++++|++|+.+.
T Consensus 333 ~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 401 (430)
T PRK14359 333 KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT 401 (430)
T ss_pred cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 44444444555555555555555443 24555555555555443 45555555555555443
No 99
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.31 E-value=4.7e-11 Score=99.38 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=74.2
Q ss_pred CeeeCCCCeeCCCcEECC---CCEECCCCEECCCCeEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ce
Q 020813 210 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS 280 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~ 280 (321)
+..+.+++.|++++.|.. .++||+++.|+++|.|.. ++||++|.|+.++.+.+++|++++.|++++.+. ++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~ 96 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGA 96 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCC
Confidence 344556666666665543 357888888888888876 599999999999999999999999999999997 88
Q ss_pred EECCCCEECcCcEec-CeEECCCcEE
Q 020813 281 VICSNAQLQERVALK-DCQVGQGYVV 305 (321)
Q Consensus 281 iI~~~~~Ig~~~~i~-~~iIg~~~~V 305 (321)
+|++++.|++++.+. +..+++++++
T Consensus 97 ~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 97 VIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred EECCCCEECCCCEECCCCEeCCCCEE
Confidence 889988888766654 3345555444
No 100
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.31 E-value=3.3e-11 Score=104.16 Aligned_cols=66 Identities=20% Similarity=0.400 Sum_probs=48.9
Q ss_pred EECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813 230 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 295 (321)
Q Consensus 230 ~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 295 (321)
.|+++|.|+++|.|. +++||+++.||.++.+.+++|+++|.||.++.|. +++|++++.|++++.+.
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~ 122 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122 (196)
T ss_pred EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEe
Confidence 345566666666664 4788999999999998888888888888888775 57777776666555443
No 101
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=6.8e-12 Score=115.09 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=61.3
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEe
Q 020813 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA 317 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~ 317 (321)
+++|++|.|++++.|..|+||.+|.||+.+.|.+|++.+|++||+|+.|++|+||.++.|++|+.+.++.+.
T Consensus 335 ~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig 406 (433)
T KOG1462|consen 335 SIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIG 406 (433)
T ss_pred hccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEec
Confidence 578888888888888888888888888888888888888888888888888888888888888888876553
No 102
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.30 E-value=8.6e-11 Score=102.46 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=16.8
Q ss_pred ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
++.|++++.|+.++.+. ++.|+++++|++++.+.
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~ 184 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVT 184 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEe
Confidence 44455555555554443 44555555555555444
No 103
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.30 E-value=4.7e-11 Score=103.12 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=40.0
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEE------e-ceEECCCCEECCCcEEe-ceEE
Q 020813 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV------V-NSVVMNHVTIGDGCSIQ-GSVI 282 (321)
Q Consensus 212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I------~-~siI~~~v~Ig~~~~I~-~~iI 282 (321)
.+.+.+.|++++.|++++.|++++.|+++|.|. +++|++++.||+++.| . ++.|++++.||+++.+. ++.|
T Consensus 95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i 174 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTI 174 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEE
Confidence 344445555555555555555555555555443 3444444444444444 3 34445555555554443 4444
Q ss_pred CCCCEECcCcEe
Q 020813 283 CSNAQLQERVAL 294 (321)
Q Consensus 283 ~~~~~Ig~~~~i 294 (321)
++++.|++++++
T Consensus 175 ~~~~~i~~~~~v 186 (201)
T TIGR03570 175 GAGAIVGAGAVV 186 (201)
T ss_pred CCCCEECCCCEE
Confidence 444444444444
No 104
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=7.2e-12 Score=116.65 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=70.5
Q ss_pred ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCC
Q 020813 225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQG 302 (321)
Q Consensus 225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~ 302 (321)
|...+.||.+++|..++.|+. +.||++|+||++|.|.+|.|++++.|...+.|++|.|++++.||+.++|+ ++.++++
T Consensus 265 i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD 344 (460)
T ss_pred EcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence 334444455555555555543 68888888888888888888888888888888888888888888888887 7888888
Q ss_pred cEEcCCcEEcCCeEe
Q 020813 303 YVVSAGCEYKGESLA 317 (321)
Q Consensus 303 ~~V~~~~~i~~~~~~ 317 (321)
+.||.-+.+++.++-
T Consensus 345 ~hIGNFVEvK~a~ig 359 (460)
T COG1207 345 VHIGNFVEVKKATIG 359 (460)
T ss_pred CeEeeeEEEeccccc
Confidence 888887777765543
No 105
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.29 E-value=5.2e-11 Score=101.96 Aligned_cols=98 Identities=27% Similarity=0.508 Sum_probs=65.5
Q ss_pred cccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEE
Q 020813 206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI 282 (321)
Q Consensus 206 ~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI 282 (321)
+......+.+.+.++.++.|++++.|++++.||++|.|. +++|+++|.||+++.|. ++++.++++||++|.|+ +++|
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 344456677777788888888888888888888887775 47777777777777774 55566666666666665 5555
Q ss_pred CCCCEECcCcEecCeEECCCcEEcCC
Q 020813 283 CSNAQLQERVALKDCQVGQGYVVSAG 308 (321)
Q Consensus 283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~ 308 (321)
.+++.|++ +|+|+++++|..+
T Consensus 166 ~~~~~ig~-----~~~v~~~~~v~~~ 186 (197)
T cd03360 166 IQGVTIGA-----GAIIGAGAVVTKD 186 (197)
T ss_pred cCCCEECC-----CCEECCCCEEcCC
Confidence 55555553 4445555555443
No 106
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.28 E-value=9.8e-11 Score=95.12 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=43.0
Q ss_pred ceEECCCCEECCCcEEe-----c----eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEe
Q 020813 262 NSVVMNHVTIGDGCSIQ-----G----SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA 317 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~-----~----~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~ 317 (321)
+++|+++|.||+++.|. + +.|++++.||.++.| +..||++++|++|+++...+.+
T Consensus 47 ~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 47 GVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred CEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE-eEEECCCCEECCCCEEeCCeEE
Confidence 34566666666666664 3 789999999999998 7899999999999988877654
No 107
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=4.3e-11 Score=117.65 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=36.8
Q ss_pred eEECCCCEECCCcEEeceEECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
++|+.++.|+..+.+.+++|+++|.||.++.+. +++||+++.||.++.|. ++.||++++|++|+.+..
T Consensus 358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~ 434 (482)
T PRK14352 358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRE 434 (482)
T ss_pred cEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcC
Confidence 344444444444444455555555566555553 25566666666666543 456666666666665543
No 108
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=101.09 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=48.1
Q ss_pred CEECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCc
Q 020813 229 CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGY 303 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~ 303 (321)
..||+++.|.++|.|. .+.||++|+||.++.|..|.|+++|.||-|++| .+++.|| ++|+||+|+
T Consensus 51 I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~v-----ldga~IG-----~~~iVgAga 120 (176)
T COG0663 51 IRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATV-----LDGAVIG-----DGSIVGAGA 120 (176)
T ss_pred eEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceE-----eCCcEEC-----CCcEEccCC
Confidence 3467777777777665 467888888888887776666666666665555 4444444 344445555
Q ss_pred EEcCCcEEcCCeE
Q 020813 304 VVSAGCEYKGESL 316 (321)
Q Consensus 304 ~V~~~~~i~~~~~ 316 (321)
.|.++..+++..+
T Consensus 121 lV~~~k~~p~~~L 133 (176)
T COG0663 121 LVTPGKEIPGGSL 133 (176)
T ss_pred cccCCcCCCCCeE
Confidence 5555555544443
No 109
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.26 E-value=5.5e-11 Score=105.46 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEec---------eEECCCCEECCCcEEe
Q 020813 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~ 278 (321)
.+..|++++.|++++.|++++.||++|.|+.++.|. +++||++|.|+.++.|.+ ++|+++|.||.++.|.
T Consensus 97 g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 97 DQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence 355666666666667777777778888888777776 589999999999999974 7788888888888885
Q ss_pred -ceEECCCCEECcCcEecCeEECCCcE
Q 020813 279 -GSVICSNAQLQERVALKDCQVGQGYV 304 (321)
Q Consensus 279 -~~iI~~~~~Ig~~~~i~~~iIg~~~~ 304 (321)
+++|++++.|++++.+.+. |.++++
T Consensus 177 ~g~~Ig~~~~IgagsvV~~d-i~~~~v 202 (231)
T TIGR03532 177 EGVRVGKGAVVAAGAIVTED-VPPNTV 202 (231)
T ss_pred CCCEECCCCEECCCCEEccc-cCCCcE
Confidence 8888888888887777643 334433
No 110
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.25 E-value=1.5e-10 Score=89.55 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=67.1
Q ss_pred CCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEE
Q 020813 228 HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305 (321)
Q Consensus 228 ~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V 305 (321)
++.|++++.|++++.|.. +.||++|.|++++.|. +++|+++|.||. .|.+|+|++++.|+.++.|.+++||+++.|
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEE
Confidence 355555555555555543 6888888888888887 478888888865 578999999999999999999999999999
Q ss_pred cCCcEEcC
Q 020813 306 SAGCEYKG 313 (321)
Q Consensus 306 ~~~~~i~~ 313 (321)
++++...+
T Consensus 89 g~~~~~~~ 96 (101)
T cd05635 89 GAGTNNSD 96 (101)
T ss_pred CCCceecc
Confidence 99988665
No 111
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.25 E-value=7.4e-11 Score=102.77 Aligned_cols=92 Identities=25% Similarity=0.445 Sum_probs=61.9
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece-----------------E---------
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-----------------V--------- 264 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s-----------------i--------- 264 (321)
..|++++.|++++.+. ++.||+++.|+.++.|.+++||++|.|++++.|... .
T Consensus 20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~ 98 (204)
T TIGR03308 20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDA 98 (204)
T ss_pred cEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccccc
Confidence 3445555555555553 567778888888888888999999999999988632 0
Q ss_pred ------ECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCC
Q 020813 265 ------VMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAG 308 (321)
Q Consensus 265 ------I~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~ 308 (321)
...++.||++|+|+ +++|.+++.|| .+++|+++++|..+
T Consensus 99 ~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig-----~~~~I~~gs~v~~~ 144 (204)
T TIGR03308 99 DFFAWRRAKRVTIGHDVWIGHGAVILPGVTIG-----NGAVIAAGAVVTKD 144 (204)
T ss_pred cccccccCCCeEECCCCEECCCCEECCCCEEC-----CCCEECCCCEECCC
Confidence 11345555555554 44444444444 69999999997765
No 112
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=7.4e-11 Score=115.15 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhh
Q 020813 71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~ 110 (321)
.++++|+|+|+++.|...+++.. .....-.|+++.|++.+
T Consensus 166 ~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g 209 (458)
T PRK14354 166 KEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEG 209 (458)
T ss_pred cEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCC
Confidence 47899999999986544543210 01112358888888765
No 113
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5.9e-11 Score=112.10 Aligned_cols=97 Identities=27% Similarity=0.448 Sum_probs=78.2
Q ss_pred ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCC
Q 020813 207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 286 (321)
Q Consensus 207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~ 286 (321)
...+.+|.+++.|++++.|+++++||++|.|++++.|.+|+|.++|.|++++.|.+|+|+.+|+||+++ . +++ +
T Consensus 258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----i~d-~ 331 (358)
T COG1208 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----IGD-V 331 (358)
T ss_pred EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----ecc-e
Confidence 345778899999999999999999999999999999999999999999999999999999999999922 2 777 7
Q ss_pred EECcCcEec-CeEECCCcEEcCCc
Q 020813 287 QLQERVALK-DCQVGQGYVVSAGC 309 (321)
Q Consensus 287 ~Ig~~~~i~-~~iIg~~~~V~~~~ 309 (321)
.+|.++.+. +.++++++++.++.
T Consensus 332 ~~g~~~~i~~g~~~~~~~~~~~~~ 355 (358)
T COG1208 332 VIGINSEILPGVVVGPGSVVESGE 355 (358)
T ss_pred EecCceEEcCceEeCCCccccCcc
Confidence 777555443 44444444444443
No 114
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.23 E-value=5.7e-11 Score=112.83 Aligned_cols=62 Identities=23% Similarity=0.354 Sum_probs=36.4
Q ss_pred CCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813 250 RHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 250 ~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~ 313 (321)
+.+.|++++.|.+|+|+++|+|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence 44555555555566666666664 245566666666666666666666666666665555544
No 115
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.22 E-value=1e-10 Score=111.51 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=75.1
Q ss_pred CCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEc
Q 020813 227 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVS 306 (321)
Q Consensus 227 ~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~ 306 (321)
..+.+.+.+.|++++.|.+|.||++|.|+. .+.+|+|+++|.||++|.|.+|+|++++.|++++.|.+|+|++++.|+
T Consensus 275 ~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 275 SVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEEC
Confidence 344455566666677777789999999963 578999999999999999999999999999999999999999999999
Q ss_pred CCcEEcCC
Q 020813 307 AGCEYKGE 314 (321)
Q Consensus 307 ~~~~i~~~ 314 (321)
+++.+.+.
T Consensus 353 ~~~~i~~~ 360 (380)
T PRK05293 353 DGVIIGGG 360 (380)
T ss_pred CCCEEcCC
Confidence 99999875
No 116
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.20 E-value=1e-10 Score=110.70 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=54.3
Q ss_pred EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 247 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
.+-+.+.|++.+.+.+|+|+++|.|+++ .|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+.
T Consensus 279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ 345 (361)
T TIGR02091 279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNA 345 (361)
T ss_pred CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeee
Confidence 3445667777777788889999999876 788899999999999999988888888888887777543
No 117
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.18 E-value=1.9e-10 Score=103.96 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=18.6
Q ss_pred eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 280 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 280 ~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
+.||++|.||.|+.| +..||++++|++|+.+...
T Consensus 251 V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 251 ISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred EEECCCcEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence 455666666666655 5555555555555544443
No 118
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.15 E-value=5.3e-10 Score=88.68 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=50.5
Q ss_pred eeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEEC----------CCcEEeceEECCCCEECCCcEEe-ce
Q 020813 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG----------SNVKVVNSVVMNHVTIGDGCSIQ-GS 280 (321)
Q Consensus 212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig----------~~~~I~~siI~~~v~Ig~~~~I~-~~ 280 (321)
++.+++.|++++.|++++.|++++.|+++| .|++++.++ .++.+.+++|++++.||+++.+. ++
T Consensus 12 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~-----~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~ 86 (119)
T cd03358 12 FIENDVKIGDNVKIQSNVSIYEGVTIEDDV-----FIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGV 86 (119)
T ss_pred EECCCcEECCCcEECCCcEEeCCeEECCCc-----EEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCc
Confidence 344444444444444444444444444444 344444332 33457788899999999998886 68
Q ss_pred EECCCCEECcCcEecCe
Q 020813 281 VICSNAQLQERVALKDC 297 (321)
Q Consensus 281 iI~~~~~Ig~~~~i~~~ 297 (321)
+|++++.|++++.+...
T Consensus 87 ~ig~~~~i~~~~~v~~~ 103 (119)
T cd03358 87 TIGEYALVGAGAVVTKD 103 (119)
T ss_pred EECCCCEEccCCEEeCc
Confidence 88888888877776543
No 119
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.14 E-value=2.6e-10 Score=98.70 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=26.1
Q ss_pred eEECCCCEECCCcEEece--------EECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813 246 SVIGRHCRIGSNVKVVNS--------VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL 294 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~s--------iI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i 294 (321)
.+||+||+|.++++|... .|+++.-+-.+++|. +|+||++|.+..++.|
T Consensus 82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatL 139 (260)
T COG1043 82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATL 139 (260)
T ss_pred EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeE
Confidence 468888888888877632 333333333333333 4444444444444444
No 120
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.13 E-value=7.7e-10 Score=100.05 Aligned_cols=92 Identities=20% Similarity=0.393 Sum_probs=57.8
Q ss_pred eCCCCeeCCCcEECCCCEECCCCE-ECCCCe---Ee-ceEECCCCEECCCcEEeceEECCC----CEECCCcEEe-ceEE
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQ-MGDKCS---VK-RSVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ-GSVI 282 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~-I~~~~~---I~-~svIg~~~~Ig~~~~I~~siI~~~----v~Ig~~~~I~-~~iI 282 (321)
|.+++++++++.|.++++|+.++. +|.++. |. .++||++|.||.+|.| .+++..+ |.||++|.|+ +|.|
T Consensus 187 Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lIGagA~I 265 (341)
T TIGR03536 187 VRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLLGANAGI 265 (341)
T ss_pred EcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEECCCCEE
Confidence 334444444444444444444444 343332 33 3688999999999999 4455555 7777777776 6666
Q ss_pred CCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813 283 CSNAQLQERVALKDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~ 312 (321)
+..|| ++|+||.|++|.++|++.
T Consensus 266 --GI~IG-----d~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 266 --GIPLG-----DRCTVEAGLYITAGTKVA 288 (341)
T ss_pred --eeEEC-----CCCEECCCCEEeCCcEEE
Confidence 66666 577788888888887764
No 121
>PRK10191 putative acyl transferase; Provisional
Probab=99.12 E-value=6.5e-10 Score=91.47 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=64.2
Q ss_pred CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcEE--eceEECCCCEECCCcEEe-ceEECC
Q 020813 210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV--VNSVVMNHVTIGDGCSIQ-GSVICS 284 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I--~~siI~~~v~Ig~~~~I~-~~iI~~ 284 (321)
+..|++.+.+++++.+++ ++.|++++.||+++ .|+++|+||+.... ..+.|+++|.||.++.+. ++.|++
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~-----~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~ 115 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDF-----TIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGN 115 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCC-----EECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECC
Confidence 345667777777777766 45666666666665 55666666654332 235788888888888887 688888
Q ss_pred CCEECcCcEecCeEECCCcEEcCCcE
Q 020813 285 NAQLQERVALKDCQVGQGYVVSAGCE 310 (321)
Q Consensus 285 ~~~Ig~~~~i~~~iIg~~~~V~~~~~ 310 (321)
++.|++++.+.+.+-....+++..++
T Consensus 116 ~~~Igags~V~~dv~~~~~v~G~pA~ 141 (146)
T PRK10191 116 NVTVGAGSVVLDSVPDNALVVGEKAR 141 (146)
T ss_pred CCEECCCCEECCccCCCcEEEccCcE
Confidence 88888888887665555555555444
No 122
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.12 E-value=4.2e-10 Score=94.60 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=22.0
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813 263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 295 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 295 (321)
++|+++|.||.++.|. +++||+++.||+++.+.
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL 147 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence 4677777777777665 56677777666665554
No 123
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.12 E-value=9.8e-10 Score=94.04 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=53.9
Q ss_pred CeeeCCCCe--eCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec-------------eEECCCCEECCC
Q 020813 210 NNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDG 274 (321)
Q Consensus 210 ~~~i~p~a~--i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~-------------siI~~~v~Ig~~ 274 (321)
+.+|.|+.. ++.++.||+++.|+.+|+|++.+.| .||++|.|+++|.|.. ..+...+.||++
T Consensus 59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~ 135 (183)
T PRK10092 59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN 135 (183)
T ss_pred CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC
Confidence 456667664 4677788888888888887776655 8999999999998851 223445566666
Q ss_pred cEEe-ceEECCCCEECcCcE
Q 020813 275 CSIQ-GSVICSNAQLQERVA 293 (321)
Q Consensus 275 ~~I~-~~iI~~~~~Ig~~~~ 293 (321)
|+|+ +++|.++++||++++
T Consensus 136 v~IG~~a~I~~gv~IG~~~v 155 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVV 155 (183)
T ss_pred cEECCCCEECCCCEECCCCE
Confidence 6664 555555555554333
No 124
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.10 E-value=4.6e-10 Score=98.97 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=52.4
Q ss_pred CeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEece-EECCCCEECCCcEEec---------eEECCC
Q 020813 217 AELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNS-VVMNHVTIGDGCSIQG---------SVICSN 285 (321)
Q Consensus 217 a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~s-iI~~~v~Ig~~~~I~~---------~iI~~~ 285 (321)
++|.+++++..+++|++|+++..++.|. ++.++.++.|.-+++++.| +|+.||+||.++.|.+ .+|++|
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 4444444444444444444444433333 2445555555555555433 3666666666666643 466677
Q ss_pred CEECcCc-EecCeEECCCcEEcCCcEEcCCe
Q 020813 286 AQLQERV-ALKDCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 286 ~~Ig~~~-~i~~~iIg~~~~V~~~~~i~~~~ 315 (321)
|.||+++ .+.++.||++|+|.+|..+...+
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 7777766 44566666666666665555443
No 125
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.10 E-value=3.1e-10 Score=109.77 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=69.3
Q ss_pred CeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813 241 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 241 ~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~ 315 (321)
+.+.+|+||++|.| ++|.|.+|+|+++|.||++|.|.+|+|+++|.||++++|.+|+|++++.|++++++++..
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~ 396 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDP 396 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCC
Confidence 35668999999999 799999999999999999999999999999999999999999999999999999998653
No 126
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=4.6e-10 Score=104.45 Aligned_cols=82 Identities=26% Similarity=0.430 Sum_probs=74.4
Q ss_pred CCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813 232 GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 232 g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i 311 (321)
.+.+.+.+++.+.+|.|+.+|.|.. +|.+|+|+.+++|+++|.|.+|+|.+++.||+||.|++|+|..+++|++|+++
T Consensus 283 ~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i 360 (393)
T COG0448 283 LPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI 360 (393)
T ss_pred CCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence 3445556666788899999999966 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCe
Q 020813 312 KGES 315 (321)
Q Consensus 312 ~~~~ 315 (321)
.+..
T Consensus 361 ~~~~ 364 (393)
T COG0448 361 GGDK 364 (393)
T ss_pred cCCc
Confidence 9873
No 127
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.07 E-value=7.4e-10 Score=106.66 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=68.0
Q ss_pred eEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813 242 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 242 ~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~ 313 (321)
.+.+++||++|.|+ +++|.+|+|+++|.|+++|.|.+|+|++++.|++++.|.+|+|+++++|++++++.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 45678999999999 999999999999999999999999999999999999999999999999999999977
No 128
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.07 E-value=7.7e-10 Score=104.47 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=63.5
Q ss_pred CCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-----eceEECCCCEECcCc-EecCeEECC
Q 020813 228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-----QGSVICSNAQLQERV-ALKDCQVGQ 301 (321)
Q Consensus 228 ~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I-----~~~iI~~~~~Ig~~~-~i~~~iIg~ 301 (321)
.+.+.+.+.|+++|.|.+++|+.+|.||++|+|++|+|+++|+||++|.| .+|+|++++.|+.++ .+.+++|++
T Consensus 248 ~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~ 327 (353)
T TIGR01208 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGK 327 (353)
T ss_pred CCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcC
Confidence 34444445555555555566666677777777777777777777777766 488999999998884 888999999
Q ss_pred CcEEcCCcEEcC
Q 020813 302 GYVVSAGCEYKG 313 (321)
Q Consensus 302 ~~~V~~~~~i~~ 313 (321)
++.|++++.+.+
T Consensus 328 ~~~i~~~~~~~~ 339 (353)
T TIGR01208 328 KVRIKGNRRRPG 339 (353)
T ss_pred CCEECCCccccc
Confidence 999999988875
No 129
>PLN02694 serine O-acetyltransferase
Probab=99.07 E-value=8.5e-10 Score=99.65 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=60.3
Q ss_pred CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEEC---CCcEEeceEECCCCEECCCcEE-eceEEC
Q 020813 210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIG---SNVKVVNSVVMNHVTIGDGCSI-QGSVIC 283 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig---~~~~I~~siI~~~v~Ig~~~~I-~~~iI~ 283 (321)
...|+|.+.||+++.|.. +++||++|.||++|.| ..+|++| .++..++++|+++|.||.|+.| ++++||
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I-----~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEE-----eecceeCCcccccCCCccEECCCeEECCeeEECCCCEEC
Confidence 456788888888777754 5666666666666644 3344443 3344567899999999999999 589999
Q ss_pred CCCEECcCcEecCe
Q 020813 284 SNAQLQERVALKDC 297 (321)
Q Consensus 284 ~~~~Ig~~~~i~~~ 297 (321)
+++.||++++|...
T Consensus 235 d~a~IGAgSVV~kd 248 (294)
T PLN02694 235 EGAKIGAGSVVLID 248 (294)
T ss_pred CCCEECCCCEECCc
Confidence 99999999888653
No 130
>PRK10502 putative acyl transferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=93.34 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=22.6
Q ss_pred CCEECCCCEECCCCeEe---ceEECCCCEECCCcEEe
Q 020813 228 HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV 261 (321)
Q Consensus 228 ~~~Ig~~~~I~~~~~I~---~svIg~~~~Ig~~~~I~ 261 (321)
+..||+++.|++++.|. ..+||++|.|++++.|.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 34555666666666554 36788888888888774
No 131
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.06 E-value=2.5e-09 Score=96.29 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=32.8
Q ss_pred ceEECCCCEECCCcEEec---------eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813 262 NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES 315 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~ 315 (321)
+|+|++++.|+.++.|.+ +.||++|.||.|+.| +..||++|+|++|+.+-..+
T Consensus 199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT 260 (319)
T TIGR03535 199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGT 260 (319)
T ss_pred CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCe
Confidence 345556666666666332 567777777777777 66666666666666655544
No 132
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.04 E-value=1.1e-09 Score=106.41 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=68.4
Q ss_pred CCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC----------------C---CEECcCcE
Q 020813 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS----------------N---AQLQERVA 293 (321)
Q Consensus 233 ~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~----------------~---~~Ig~~~~ 293 (321)
+++.+ .++.|.+|+|+++|.|+ ++.|.+|+|+++|.||++|.|.+|++.. + +.|++++.
T Consensus 304 ~~~~~-~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 381 (436)
T PLN02241 304 PPSKI-EDCRITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTK 381 (436)
T ss_pred CCcEe-cCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCE
Confidence 44444 35677779999999999 9999999999999999999999888855 2 38999999
Q ss_pred ecCeEECCCcEEcCCcEEcC
Q 020813 294 LKDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 294 i~~~iIg~~~~V~~~~~i~~ 313 (321)
+.+++|++++.|++++.+.+
T Consensus 382 i~~~vI~~~v~Ig~~~~i~~ 401 (436)
T PLN02241 382 IRNAIIDKNARIGKNVVIIN 401 (436)
T ss_pred EcceEecCCCEECCCcEEec
Confidence 99999999999999998874
No 133
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.04 E-value=1.2e-09 Score=98.46 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=26.2
Q ss_pred ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813 262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 296 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 296 (321)
+++|+++|.||.||.|. ++.||+++.||+|+++..
T Consensus 193 ~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred CCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence 45778888888887776 777888888887777654
No 134
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.03 E-value=2.6e-09 Score=96.13 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCCCeeCCCcEECCCCEECCCC-EECCCCeEeceEECCCCEECCCcEEe-ceE----ECCC----CEECCCcEEe-ceEE
Q 020813 214 HPSAELGSKTTVGPHCMLGEGS-QMGDKCSVKRSVIGRHCRIGSNVKVV-NSV----VMNH----VTIGDGCSIQ-GSVI 282 (321)
Q Consensus 214 ~p~a~i~~~~~i~~~~~Ig~~~-~I~~~~~I~~svIg~~~~Ig~~~~I~-~si----I~~~----v~Ig~~~~I~-~~iI 282 (321)
.-+|++++++.|.++++|..++ +||+. .| ++.|+++|+||+++.|. ++. +..+ +.||++|.|+ +|.|
T Consensus 163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I 240 (319)
T TIGR03535 163 RLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL 240 (319)
T ss_pred eeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE
Confidence 3456677777777777777777 57764 44 56677777777777665 333 2335 6677777666 6665
Q ss_pred CCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813 283 CSNAQLQERVALKDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~ 312 (321)
+..|| ++|+||.|++|.++|++.
T Consensus 241 --GI~IG-----d~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 241 --GISLG-----DDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred --CeEEC-----CCCEECCCCEEeCCeEEE
Confidence 56666 466677777777776654
No 135
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.02 E-value=1.3e-09 Score=105.69 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=72.1
Q ss_pred ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC-------------------CCEECcC
Q 020813 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS-------------------NAQLQER 291 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~-------------------~~~Ig~~ 291 (321)
+.+.+.+. ++.+.+|.||++|.| +++.|.+|+|+++|+||++|.|.+|+|+. ++.||++
T Consensus 295 ~~~~a~~~-~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~ 372 (429)
T PRK02862 295 YLPPSKLL-DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEG 372 (429)
T ss_pred CCCCcccc-ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCC
Confidence 34444443 567788999999999 89999999999999999999999999976 7999999
Q ss_pred cEecCeEECCCcEEcCCcEEcCC
Q 020813 292 VALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 292 ~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
|.|.+|+|++++.|++++.+.+.
T Consensus 373 ~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 373 TTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred CEEEEEEECCCcEECCCcEEecC
Confidence 99999999999999999999643
No 136
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.01 E-value=4e-09 Score=89.25 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=28.4
Q ss_pred CeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813 210 NNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 261 (321)
Q Consensus 210 ~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~ 261 (321)
+..+.+++.+ +.++.|++++.|+.++.|.+.+ +.+||++|.|+++|.|.
T Consensus 48 ~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~~---~i~IG~~v~Ig~~~~I~ 98 (169)
T cd03357 48 NVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVA---PVTIGDNVLIGPNVQIY 98 (169)
T ss_pred CCEEcCCEEEEeCCcCEECCCceEcCCEEEeccC---cEEECCCCEECCCCEEE
Confidence 3344444433 3445555555555555554322 34788888888888884
No 137
>PLN02357 serine acetyltransferase
Probab=99.00 E-value=2.9e-09 Score=98.83 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=64.7
Q ss_pred CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCC---cEEeceEECCCCEECCCcEE-eceEEC
Q 020813 210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSI-QGSVIC 283 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~---~~I~~siI~~~v~Ig~~~~I-~~~iI~ 283 (321)
...|+|.+.||.++.+.. +++||++++||++| .|+.+|+||.. ....+++|+++|.||.|+.| ++++||
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV-----~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IG 300 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNV-----SILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIG 300 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCC-----EEeCCceecCccccCCccCceeCCCeEECCceEEECCeEEC
Confidence 456777777777777754 45666666666665 33444444321 12346889999999999888 489999
Q ss_pred CCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813 284 SNAQLQERVALKDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 284 ~~~~Ig~~~~i~~~iIg~~~~V~~~~~i 311 (321)
+++.||++++|...+-...+++|.-+++
T Consensus 301 dga~IGAgSVV~~dVP~~~~v~G~PArv 328 (360)
T PLN02357 301 EGAKIGAGSVVLKDVPPRTTAVGNPARL 328 (360)
T ss_pred CCCEECCCCEECcccCCCcEEECCCeEE
Confidence 9999999998876544444444544443
No 138
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.00 E-value=5.9e-09 Score=90.53 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=33.7
Q ss_pred cCCeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813 208 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 261 (321)
Q Consensus 208 ~~~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~ 261 (321)
+.+.+|.|++.+ +.++.||.++.|+.+|.|.++. +..||++|.|+++|.|.
T Consensus 59 g~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~---~I~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLS 111 (203)
T ss_pred CCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCC---CEEECCCCEECCCCEEE
Confidence 345667777665 3556666666666666654432 35889999999998885
No 139
>PLN02694 serine O-acetyltransferase
Probab=98.99 E-value=1.6e-09 Score=97.80 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=46.5
Q ss_pred EECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEe-cCeEECCC
Q 020813 224 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQG 302 (321)
Q Consensus 224 ~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i-~~~iIg~~ 302 (321)
.|++++.||+++.|..++ .++||++|.||++|.|.+.+...++ +.++..++++|+++|.||+|++| .++.||++
T Consensus 162 dI~p~A~IG~gv~Idh~t---GVVIGe~a~IGdnv~I~~~VtLGg~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 162 DIHPAAKIGKGILFDHAT---GVVIGETAVIGNNVSILHHVTLGGT--GKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred EeCCcceecCCEEEeCCC---CeEECCCcEECCCCEEeecceeCCc--ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 344444444444443321 2466666666666655433322222 23344556677777777777766 46667777
Q ss_pred cEEcCCcEEcC
Q 020813 303 YVVSAGCEYKG 313 (321)
Q Consensus 303 ~~V~~~~~i~~ 313 (321)
++|++|+++..
T Consensus 237 a~IGAgSVV~k 247 (294)
T PLN02694 237 AKIGAGSVVLI 247 (294)
T ss_pred CEECCCCEECC
Confidence 77777666654
No 140
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.99 E-value=3.3e-09 Score=95.69 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCC---cEEeceEECCCCEECcCcEec-C
Q 020813 221 SKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDG---CSIQGSVICSNAQLQERVALK-D 296 (321)
Q Consensus 221 ~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~---~~I~~~iI~~~~~Ig~~~~i~-~ 296 (321)
.++.|++++.||+++.|+.++. .+||++|.||++|.| +++|+||.. +.....+|+++|.||+|+.|. +
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~g---ivIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg 211 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATG---IVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN 211 (273)
T ss_pred eeeEecCcceECCCeEEcCCCC---eEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC
Confidence 3444444444555555544332 255666666665543 334444421 112234555555555555443 4
Q ss_pred eEECCCcEEcCCcEEc
Q 020813 297 CQVGQGYVVSAGCEYK 312 (321)
Q Consensus 297 ~iIg~~~~V~~~~~i~ 312 (321)
+.||++++|++|+.+.
T Consensus 212 v~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 212 IEVGRGAKIGAGSVVL 227 (273)
T ss_pred CEECCCCEECCCCEEC
Confidence 5555555555555544
No 141
>PRK10502 putative acyl transferase; Provisional
Probab=98.99 E-value=5.1e-09 Score=89.69 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=32.3
Q ss_pred EECCCCEECCCcEEe---ceEECCCCEECCCcEEe----------------ceEECCCCEECcCcEec-CeEECCCcEEc
Q 020813 247 VIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------GSVICSNAQLQERVALK-DCQVGQGYVVS 306 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~---~siI~~~v~Ig~~~~I~----------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~ 306 (321)
.||++|.|++++.|. ...|+++|.|++++.|. ..+|++++.||+++.|. ++.||++++|+
T Consensus 73 ~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIg 152 (182)
T PRK10502 73 TIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVG 152 (182)
T ss_pred EECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEEC
Confidence 444444444444443 23455555555555442 13555555555555542 55555555555
Q ss_pred CCcEE
Q 020813 307 AGCEY 311 (321)
Q Consensus 307 ~~~~i 311 (321)
+++.+
T Consensus 153 a~svV 157 (182)
T PRK10502 153 ARSSV 157 (182)
T ss_pred CCCEE
Confidence 55543
No 142
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.97 E-value=1.1e-08 Score=88.46 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=18.6
Q ss_pred CEECCCCEECCCCeEe---ceEECCCCEECCCcEEe
Q 020813 229 CMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV 261 (321)
Q Consensus 229 ~~Ig~~~~I~~~~~I~---~svIg~~~~Ig~~~~I~ 261 (321)
..||+++.|++++.|. ..+||++|.|++++.|.
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~ 101 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFIT 101 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence 3444444444444443 35677777777777665
No 143
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.97 E-value=7.4e-09 Score=79.91 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=35.3
Q ss_pred eCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcE---EeceEECCCCEECCCcEEe-ceEECCCC
Q 020813 213 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVICSNA 286 (321)
Q Consensus 213 i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~---I~~siI~~~v~Ig~~~~I~-~~iI~~~~ 286 (321)
|++.++|++++.++. .++|++++.|++++ .|++++.|+.++. +..++|++++.|+.++.+. ++.|++++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~-----~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~ 79 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNC-----TIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNV 79 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCC
Confidence 344444444444433 23344444444433 3444444444443 3445555555555555554 34455555
Q ss_pred EECcCcEe
Q 020813 287 QLQERVAL 294 (321)
Q Consensus 287 ~Ig~~~~i 294 (321)
.|++++.+
T Consensus 80 ~i~~~~~i 87 (101)
T cd03354 80 KIGANAVV 87 (101)
T ss_pred EECCCCEE
Confidence 55444443
No 144
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.96 E-value=1e-08 Score=79.07 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=59.1
Q ss_pred cEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCCEECcCcEec-CeE
Q 020813 223 TTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS---IQGSVICSNAQLQERVALK-DCQ 298 (321)
Q Consensus 223 ~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~---I~~~iI~~~~~Ig~~~~i~-~~i 298 (321)
+.|++++.|++++.|+.+. .++||+++.||+++. |++++.|++++. ++.++|++++.|+.++.+. ++.
T Consensus 3 ~~i~~~~~ig~~~~i~~~~---~~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~ 74 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGT---GIVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNIT 74 (101)
T ss_pred eEeCCCCEECCCEEECCCC---eEEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCE
Confidence 3445555555555554431 246777777777765 467777777775 5688889999999888876 488
Q ss_pred ECCCcEEcCCcEEcCC
Q 020813 299 VGQGYVVSAGCEYKGE 314 (321)
Q Consensus 299 Ig~~~~V~~~~~i~~~ 314 (321)
|+++++|++++.+...
T Consensus 75 Ig~~~~i~~~~~i~~~ 90 (101)
T cd03354 75 IGDNVKIGANAVVTKD 90 (101)
T ss_pred ECCCCEECCCCEECcc
Confidence 8888888888887764
No 145
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.96 E-value=1.1e-08 Score=88.45 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=39.1
Q ss_pred eEECCCCEECCCcEEe---ceEECCCCEECCCcEEec----------------------------eEECCCCEECcCcEe
Q 020813 246 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQG----------------------------SVICSNAQLQERVAL 294 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~---~siI~~~v~Ig~~~~I~~----------------------------~iI~~~~~Ig~~~~i 294 (321)
..||++|.|++++.|. +..|+++|.|++++.|.+ ++|++++.||.++.+
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 3556666666666554 345666666666555531 356666666666655
Q ss_pred c-CeEECCCcEEcCCcEEcC
Q 020813 295 K-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 295 ~-~~iIg~~~~V~~~~~i~~ 313 (321)
. +++||++++|++++.+.+
T Consensus 146 ~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 146 LPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred cCCCEECCCCEECCCCEECc
Confidence 3 566666666666665554
No 146
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.96 E-value=7.1e-09 Score=75.37 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=18.3
Q ss_pred ECCCCEECCCCeEec-eEECCCCEECCCcEEece
Q 020813 231 LGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS 263 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~s 263 (321)
|++++.|++++.|.. ++||++|.|++++.|.++
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 333444444444443 567777777777766654
No 147
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.2e-09 Score=94.61 Aligned_cols=90 Identities=12% Similarity=0.237 Sum_probs=70.5
Q ss_pred ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-------
Q 020813 225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD------- 296 (321)
Q Consensus 225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~------- 296 (321)
|-++++|.+.+.+...+.|+. ..||.+++||+|++|.+|+|.++++|.+|+.+-+||||.++.||..+++++
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~ 364 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP 364 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC
Confidence 444555555555555555553 588999999999999999999999999999999999999999999988853
Q ss_pred -------eEECCCcEEcCCcEEcCC
Q 020813 297 -------CQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 297 -------~iIg~~~~V~~~~~i~~~ 314 (321)
++.|+.+.|++.+.+-+.
T Consensus 365 ~~~~~a~Tilga~v~v~dev~v~~s 389 (407)
T KOG1460|consen 365 NLPFAALTILGADVSVEDEVIVLNS 389 (407)
T ss_pred CCCcceeEEecccceecceeEEeee
Confidence 466677777666665554
No 148
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.95 E-value=7.2e-09 Score=75.34 Aligned_cols=63 Identities=24% Similarity=0.467 Sum_probs=28.9
Q ss_pred ECCCCEECCCcEEec-eEECCCCEECCCcEEec---------eEECCCCEECcCcEec-CeEECCCcEEcCCcE
Q 020813 248 IGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQG---------SVICSNAQLQERVALK-DCQVGQGYVVSAGCE 310 (321)
Q Consensus 248 Ig~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~ 310 (321)
||+++.|++++.|.. ++|++++.|++++.|.+ .+|++++.|+.++.+. ++.|+++++|++++.
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~ 76 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV 76 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence 444444444444442 44444444444444442 3445555555444442 344555555554444
No 149
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.94 E-value=3.2e-09 Score=93.69 Aligned_cols=83 Identities=17% Similarity=0.356 Sum_probs=50.7
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeE------ec-eEECCCCEECCCcEEec---------eEECCCCEECCCc-
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSV------KR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC- 275 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I------~~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~- 275 (321)
+.-+|+|++++.+.+.++|.=|+.++++|.| +. .+||+||.||-++.|.. .+|++||.||+|+
T Consensus 117 VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~ 196 (271)
T COG2171 117 VRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSE 196 (271)
T ss_pred EeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccc
Confidence 3344455555555554444444445555544 33 67888888888888863 4577777777776
Q ss_pred EEeceEECCCCEECcCcEec
Q 020813 276 SIQGSVICSNAQLQERVALK 295 (321)
Q Consensus 276 ~I~~~iI~~~~~Ig~~~~i~ 295 (321)
.+.+++++++|.|++|+.|.
T Consensus 197 ~veGV~vGdg~VV~aGv~I~ 216 (271)
T COG2171 197 VVEGVIVGDGCVVAAGVFIT 216 (271)
T ss_pred eEeeeEeCCCcEEecceEEe
Confidence 44466677666666666553
No 150
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.93 E-value=1.6e-09 Score=97.90 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=80.8
Q ss_pred cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCC
Q 020813 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNA 286 (321)
Q Consensus 208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~ 286 (321)
..+.++++.+.+|++|.|++|++||++|+|++|+.|.+|+|-.+..++.++.|..++++.+++||.+++|. +|+||+|+
T Consensus 262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 35778899999999999999999999999999999999999999999999999999999999999999887 78888888
Q ss_pred EECcCcEecC
Q 020813 287 QLQERVALKD 296 (321)
Q Consensus 287 ~Ig~~~~i~~ 296 (321)
.|.+.-.+++
T Consensus 342 ~V~d~~~vn~ 351 (371)
T KOG1322|consen 342 IVADEDYVNE 351 (371)
T ss_pred EEeccccccc
Confidence 8876555553
No 151
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.92 E-value=1.2e-08 Score=79.40 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCCeeCCCcEECC--CCEECCCCEECCCCeEece---EECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCE
Q 020813 214 HPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS---VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQ 287 (321)
Q Consensus 214 ~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~s---vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~ 287 (321)
++++.|++++++.. ++.||++|.|+++|.|.++ .++.++.+........++|++++.|++++.+. ++.|++++.
T Consensus 5 g~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~ 84 (109)
T cd04647 5 GDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAV 84 (109)
T ss_pred CCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCE
Confidence 33444444444433 4444444444444444332 22222222222233344455555555554442 444455444
Q ss_pred ECcCcEec
Q 020813 288 LQERVALK 295 (321)
Q Consensus 288 Ig~~~~i~ 295 (321)
|++++.+.
T Consensus 85 i~~~~~v~ 92 (109)
T cd04647 85 VGAGSVVT 92 (109)
T ss_pred ECCCCEEe
Confidence 44444443
No 152
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.90 E-value=1.8e-09 Score=85.99 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=52.7
Q ss_pred ceEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcE
Q 020813 245 RSVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCE 310 (321)
Q Consensus 245 ~svIg~~~~Ig~~~~I~-------------~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~ 310 (321)
+..||+.|.+++++.|+ +-.|+++|.|+++|.+.-+.|+..+.+|.+++|. +|++-+.+.|.++++
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tV 133 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTV 133 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcc
Confidence 34666666666666664 3467888888888888777777777777777775 677777777777777
Q ss_pred EcCCeEeee
Q 020813 311 YKGESLARK 319 (321)
Q Consensus 311 i~~~~~~~~ 319 (321)
++.++++..
T Consensus 134 lPpet~vpp 142 (184)
T KOG3121|consen 134 LPPETLVPP 142 (184)
T ss_pred cCcccccCC
Confidence 777766543
No 153
>PLN02739 serine acetyltransferase
Probab=98.89 E-value=1.1e-08 Score=94.37 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=52.8
Q ss_pred CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcE---EeceEECCCCEECCCcEEe-ceEEC
Q 020813 210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVIC 283 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~---I~~siI~~~v~Ig~~~~I~-~~iI~ 283 (321)
+..|+|.+.||+++.|.. +++||++|+||++| .|.++|+||.... -.+.+|+++|.||.|+.|- ++.||
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv-----~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRV-----SILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCC-----EEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence 456777777777777643 45555555555544 3344444432110 0246788888888888885 78888
Q ss_pred CCCEECcCcEecC
Q 020813 284 SNAQLQERVALKD 296 (321)
Q Consensus 284 ~~~~Ig~~~~i~~ 296 (321)
+++.||+|++|..
T Consensus 280 d~aiIGAGSVV~k 292 (355)
T PLN02739 280 AGAMVAAGSLVLK 292 (355)
T ss_pred CCCEECCCCEECC
Confidence 8888888887754
No 154
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.88 E-value=1.9e-08 Score=87.34 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=13.8
Q ss_pred EECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813 281 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 281 iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~ 312 (321)
+||++|.||.++.|. ++.||++++|++|+.+.
T Consensus 133 ~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~ 165 (203)
T PRK09527 133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT 165 (203)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 444444444444332 34444444444444433
No 155
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.88 E-value=1.6e-09 Score=95.21 Aligned_cols=66 Identities=39% Similarity=0.665 Sum_probs=58.1
Q ss_pred ccCCCCCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813 20 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 85 (321)
Q Consensus 20 ~~~~~~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl 85 (321)
.|++.++..+++++|.++..++|+.+.++.+..+.++++++++||++++++||+|+|||+|++|||
T Consensus 149 ~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 149 GKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred ccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 344445556899999999999999998888888888999999999999999999999999999985
No 156
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.88 E-value=1.7e-08 Score=84.77 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=18.2
Q ss_pred ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813 279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~ 313 (321)
.++|+++|.|++++.+. +++||++++|++++.+..
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 34555555555555443 355555555555555443
No 157
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.87 E-value=1.7e-08 Score=78.63 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=49.2
Q ss_pred EECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece---EECCCCEECCCcEEeceEECCCCEECcCcEe-cCeEE
Q 020813 224 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS---VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQV 299 (321)
Q Consensus 224 ~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s---iI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i-~~~iI 299 (321)
.|++++.|++++.|... .++.||++|.|+++|.|.++ .++.++.+........++|++++.|+.++.+ .++.|
T Consensus 3 ~Ig~~~~I~~~~~i~~~---~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~i 79 (109)
T cd04647 3 SIGDNVYIGPGCVISAG---GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTI 79 (109)
T ss_pred EECCCcEECCCCEEecC---CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEE
Confidence 34444444444444432 13577777777777777643 3333333333444456666666666666666 36666
Q ss_pred CCCcEEcCCcEEc
Q 020813 300 GQGYVVSAGCEYK 312 (321)
Q Consensus 300 g~~~~V~~~~~i~ 312 (321)
+++++|++++.+.
T Consensus 80 g~~~~i~~~~~v~ 92 (109)
T cd04647 80 GDGAVVGAGSVVT 92 (109)
T ss_pred CCCCEECCCCEEe
Confidence 6666666666655
No 158
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.84 E-value=4.2e-08 Score=76.59 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=10.0
Q ss_pred eEECCCCEECCCcEEe
Q 020813 246 SVIGRHCRIGSNVKVV 261 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~ 261 (321)
..||++|.|++++.|.
T Consensus 24 i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 24 VTIGSDACISQGAYLC 39 (107)
T ss_pred eEECCCCEECCCeEee
Confidence 4666666666666653
No 159
>PRK10191 putative acyl transferase; Provisional
Probab=98.81 E-value=6e-08 Score=79.85 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=5.5
Q ss_pred EECCCCEECCCcEE
Q 020813 247 VIGRHCRIGSNVKV 260 (321)
Q Consensus 247 vIg~~~~Ig~~~~I 260 (321)
+||++|.||.++.+
T Consensus 94 ~IGd~~~Ig~~~~I 107 (146)
T PRK10191 94 HIGNGVELGANVII 107 (146)
T ss_pred EECCCcEEcCCCEE
Confidence 33344444333333
No 160
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.80 E-value=2.6e-09 Score=96.37 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=73.9
Q ss_pred cEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-----------------cCCCccceEEeEeHHHHHHHHh
Q 020813 29 NIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-----------------RADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 29 ~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-----------------~s~l~d~giYi~~~~vl~~~l~ 90 (321)
.++.+|+..++.+|.+++++++... +++.....+++.+.+ .++++++|+|+|++++|+.+..
T Consensus 113 ~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~ 192 (257)
T cd06428 113 VCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKK 192 (257)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhh
Confidence 4556777888888988888776422 222122233443332 2568999999999999965542
Q ss_pred cc------------------ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcccccc
Q 020813 91 QK------------------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYA 152 (321)
Q Consensus 91 ~~------------------~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (321)
.. ..+.++..|++|.|++++
T Consensus 193 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~------------------------------------------ 230 (257)
T cd06428 193 AFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSG------------------------------------------ 230 (257)
T ss_pred hccccccccccccccccccccceeeehhhhhhHHhccC------------------------------------------
Confidence 11 123445578888877643
Q ss_pred CCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813 153 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 194 (321)
Q Consensus 153 ~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~ 194 (321)
++++| +.++||.|+||+++|+++|+.+
T Consensus 231 -------------~v~~~--~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 231 -------------KLYVY--KTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred -------------CEEEe--cCCCeeecCCCHHHHHhHhhcC
Confidence 46677 6689999999999999999753
No 161
>PLN02357 serine acetyltransferase
Probab=98.79 E-value=3.3e-08 Score=91.80 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=18.3
Q ss_pred ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813 279 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG 313 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~ 313 (321)
.++||++|.||+|+.| .+.+||++++|++|+++..
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 4555555555555544 3455555555555555443
No 162
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.78 E-value=7.9e-08 Score=82.32 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=20.9
Q ss_pred ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813 262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 296 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 296 (321)
...|+++|.||.+|.|. ++.||+++.|++++++..
T Consensus 129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CeEECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 34456666666666664 566666666666666553
No 163
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.76 E-value=6.5e-08 Score=81.84 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=11.9
Q ss_pred CCeeCCCcEECCCCEEC--CCCEECCCC
Q 020813 216 SAELGSKTTVGPHCMLG--EGSQMGDKC 241 (321)
Q Consensus 216 ~a~i~~~~~i~~~~~Ig--~~~~I~~~~ 241 (321)
.+.|++++.|+.++.|. .++.||+++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v 89 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNV 89 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCC
Confidence 44455555555444443 234444443
No 164
>PLN02739 serine acetyltransferase
Probab=98.76 E-value=3.6e-08 Score=90.97 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=8.6
Q ss_pred CEECCCcEEe-ceEECCCCEEC
Q 020813 269 VTIGDGCSIQ-GSVICSNAQLQ 289 (321)
Q Consensus 269 v~Ig~~~~I~-~~iI~~~~~Ig 289 (321)
++||++|.|+ +++|..+++||
T Consensus 258 p~IGd~V~IGagA~IlG~V~IG 279 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIG 279 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEEC
Confidence 3444444443 33333344444
No 165
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.75 E-value=4.9e-08 Score=82.56 Aligned_cols=77 Identities=26% Similarity=0.332 Sum_probs=53.4
Q ss_pred CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe
Q 020813 210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ 278 (321)
Q Consensus 210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~ 278 (321)
+..|+|.|+||++..|.. +++||+-++ ||+||.|-.+++|+ +-.|+++|.||+||.|-
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~-----------IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkIL 135 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAV-----------IGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKIL 135 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeE-----------ECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEE
Confidence 456788888777776643 234444444 44444444444443 45799999999999885
Q ss_pred -ceEECCCCEECcCcEecCe
Q 020813 279 -GSVICSNAQLQERVALKDC 297 (321)
Q Consensus 279 -~~iI~~~~~Ig~~~~i~~~ 297 (321)
+-.||+|+.||+|+++-..
T Consensus 136 G~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 136 GNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred cceEECCCCEECCCceEccC
Confidence 8889999999999988643
No 166
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.68 E-value=1.9e-07 Score=72.86 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=16.1
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813 263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 295 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 295 (321)
..|+++|.||.++.|. ++.|++++.|++++.+.
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence 3455555555555544 44455555555444443
No 167
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.68 E-value=1.2e-08 Score=90.60 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=70.6
Q ss_pred EEEecCCccEEEeeccccccccceeecHHHHhhcCeeee-----------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813 30 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI-----------------RADLMDAHMYAFNRSVLQEVLDQK 92 (321)
Q Consensus 30 l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~-----------------~s~l~d~giYi~~~~vl~~~l~~~ 92 (321)
++..|+.+++.+|.+++++.+..+. +.....+++.+.+ .++++++|+|+|++++|+.+ .+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l-~~- 188 (233)
T cd06425 112 ICDFPLAELLDFHKKHGAEGTILVT-KVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRI-PL- 188 (233)
T ss_pred eeCCCHHHHHHHHHHcCCCEEEEEE-EcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhc-cc-
Confidence 3345666777788888877664221 1111112222221 25689999999999999654 32
Q ss_pred ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEe
Q 020813 93 DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172 (321)
Q Consensus 93 ~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 172 (321)
...++..|++|.|++++ ++.+|
T Consensus 189 -~~~~~~~~~~~~l~~~~-------------------------------------------------------~v~~~-- 210 (233)
T cd06425 189 -RPTSIEKEIFPKMASEG-------------------------------------------------------QLYAY-- 210 (233)
T ss_pred -CcccchhhhHHHHHhcC-------------------------------------------------------CEEEE--
Confidence 34566789999987753 46677
Q ss_pred cCccceeeccCHHHHHHHchhhc
Q 020813 173 SNSKYCVRLNSIQAFMDINRDVI 195 (321)
Q Consensus 173 ~~~~~w~~i~t~~~y~~~~~~~l 195 (321)
+.++||.|+||+++|+++++.+|
T Consensus 211 ~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 211 ELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred eeCCEEEcCCCHHHHHHHHHHhC
Confidence 45789999999999999988654
No 168
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.57 E-value=2.7e-08 Score=88.86 Aligned_cols=113 Identities=15% Similarity=0.311 Sum_probs=80.6
Q ss_pred ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec-----------------CCCccceEEeEeHHHHHHHH
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR-----------------ADLMDAHMYAFNRSVLQEVL 89 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~-----------------s~l~d~giYi~~~~vl~~~l 89 (321)
|.++..|+..++..|..++++.+.. ...+.+...+|+.+++. ++++++|+|+|++++|+.++
T Consensus 112 D~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 112 DIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLL 191 (248)
T ss_dssp EEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred cccccchhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceeccCceEEEcchHHHHHh
Confidence 4677778888888999888855332 22233445566665442 56899999999999998664
Q ss_pred h---ccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcce
Q 020813 90 D---QKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK 166 (321)
Q Consensus 90 ~---~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (321)
+ +.....++..|++|.+++++. .
T Consensus 192 ~~~~~~~~~~~~l~d~i~~~~~~~~------------------------------------------------------~ 217 (248)
T PF00483_consen 192 EMIKENARGEDFLTDAIPKLLEQGK------------------------------------------------------K 217 (248)
T ss_dssp HHHHTCTTSSHHHHHHHHHHHHTTC------------------------------------------------------E
T ss_pred hhhhccchhhhHHHHHHHHHHHcCC------------------------------------------------------c
Confidence 3 334466677899999998762 3
Q ss_pred eEEEEecCcc--ceeeccCHHHHHHHchhhcc
Q 020813 167 CCVYIASNSK--YCVRLNSIQAFMDINRDVIG 196 (321)
Q Consensus 167 v~~~i~~~~~--~w~~i~t~~~y~~~~~~~l~ 196 (321)
+.+|. .++ +|.|+|++++|++|++.++.
T Consensus 218 ~~~~~--~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 218 VYAFI--FEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEEE--HSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred eEEEE--ecCCeEEEECCCHHHHHHHHHHHhc
Confidence 44553 345 89999999999999998764
No 169
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=98.57 E-value=4.4e-08 Score=88.32 Aligned_cols=107 Identities=14% Similarity=0.244 Sum_probs=76.8
Q ss_pred ccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeec--------------CCCccceEEeEeHHHHHHHHhccc
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR--------------ADLMDAHMYAFNRSVLQEVLDQKD 93 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~--------------s~l~d~giYi~~~~vl~~~l~~~~ 93 (321)
|.++.+|+..++..|.+++++++... ++ ...+++.+.+. ++++++|+|+|++++|+ ++++
T Consensus 127 D~i~~~dl~~~~~~h~~~~~d~tl~~-~~--~~~~yG~v~~d~~~V~~~~Ekp~~~~~~i~~Giyi~~~~il~-~l~~-- 200 (254)
T TIGR02623 127 DGVADIDIKALIAFHRKHGKKATVTA-VQ--PPGRFGALDLEGEQVTSFQEKPLGDGGWINGGFFVLNPSVLD-LIDG-- 200 (254)
T ss_pred CeEecCCHHHHHHHHHHcCCCEEEEE-ec--CCCcccEEEECCCeEEEEEeCCCCCCCeEEEEEEEEcHHHHh-hccc--
Confidence 56777888888888988888876421 11 11233443331 36899999999999995 5543
Q ss_pred cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEec
Q 020813 94 KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIAS 173 (321)
Q Consensus 94 ~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 173 (321)
...++..|++|.|++++ ++++| .
T Consensus 201 ~~~~~~~d~i~~l~~~~-------------------------------------------------------~v~~~--~ 223 (254)
T TIGR02623 201 DATVWEQEPLETLAQRG-------------------------------------------------------ELSAY--E 223 (254)
T ss_pred cCchhhhhHHHHHHhCC-------------------------------------------------------CEEEE--e
Confidence 23467789999998764 35667 4
Q ss_pred CccceeeccCHHHHHHHchhhccc
Q 020813 174 NSKYCVRLNSIQAFMDINRDVIGE 197 (321)
Q Consensus 174 ~~~~w~~i~t~~~y~~~~~~~l~~ 197 (321)
.++||.|+||+++|.+++..+-..
T Consensus 224 ~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 224 HSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred CCCEEecCCchHHHHHHHHHHHcC
Confidence 579999999999999998876543
No 170
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.52 E-value=5.6e-07 Score=76.20 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=14.1
Q ss_pred eEECCCCEECcCcEe-cCeEECCCcEEcCCcEE
Q 020813 280 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY 311 (321)
Q Consensus 280 ~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i 311 (321)
-.|++++.||+|+.| .+-.||+++.|++|+++
T Consensus 120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred CccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 344444444444432 23344444444444443
No 171
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.47 E-value=3.1e-07 Score=73.31 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=42.2
Q ss_pred ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813 245 RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 245 ~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~ 312 (321)
+-.||+++.|+++|.+....|+..|.+|.+|.|+ +|++-+-+.|-+ ++++.+.+.+++-+.+.
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild-----~tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILD-----DTVLPPETLVPPYSTIG 147 (184)
T ss_pred eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccC-----CcccCcccccCCceEEc
Confidence 4579999999999998888888888888777766 555555555543 44444444444444444
No 172
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.44 E-value=1.7e-06 Score=71.22 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=17.5
Q ss_pred ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813 262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK 295 (321)
Q Consensus 262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 295 (321)
+++|+++|.||.+|.|. ++.|++++.||++++|.
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 44555555555555553 45555555555544444
No 173
>PRK10122 GalU regulator GalF; Provisional
Probab=98.39 E-value=1.8e-07 Score=86.28 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCccceEEeEeHHHHHHHHhcccc--CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 147 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~--~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (321)
++++++|+|+|++++|+.+...... ....-.|+++.+++++
T Consensus 207 s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~------------------------------------- 249 (297)
T PRK10122 207 SDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQ------------------------------------- 249 (297)
T ss_pred ccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCC-------------------------------------
Confidence 5789999999999999765431110 1112247888887643
Q ss_pred cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813 148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 194 (321)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~ 194 (321)
++.+| ..+++|.|+|++++|++++..+
T Consensus 250 ------------------~v~~~--~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 250 ------------------SVDAM--LMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ------------------CEEEE--EeCCEEEcCCCHHHHHHHHHHH
Confidence 46677 4578999999999999999987
No 174
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=98.37 E-value=2.5e-07 Score=85.34 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCCccceEEeEeHHHHHHHHhccccCCCCc----cchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLK----QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP 145 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~----~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (321)
++++++|+|+|++++|+.+ +... ..+.+ .|+++.|++++
T Consensus 207 s~~~~~GiYi~~~~i~~~l-~~~~-~~~~ge~~ltd~i~~l~~~~----------------------------------- 249 (297)
T TIGR01105 207 SDLMAVGRYVLSADIWAEL-ERTE-PGAWGRIQLTDAIAELAKKQ----------------------------------- 249 (297)
T ss_pred cCEEEEEEEEECHHHHHHH-hcCC-CCCCCeeeHHHHHHHHHhcC-----------------------------------
Confidence 5799999999999999744 4311 11112 38888887753
Q ss_pred CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813 146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 194 (321)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~ 194 (321)
++++|. .+++|.|+|++++|+++|.++
T Consensus 250 --------------------~v~~~~--~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 250 --------------------SVDAML--MTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred --------------------CEEEEE--eccEEECCCCHHHHHHHHHHH
Confidence 466774 478999999999999998876
No 175
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=3.1e-07 Score=81.61 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=89.4
Q ss_pred cEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhc
Q 020813 29 NIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQ 91 (321)
Q Consensus 29 ~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~ 91 (321)
+++--++++.+..+.+.+++.+. ..++ +..++||.+++. |||+-+|+|+|++.|++ +++.
T Consensus 109 Ni~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~-~~~~ 185 (286)
T COG1209 109 NIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFE-AIKQ 185 (286)
T ss_pred ceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEcCCCcEEEeEECCCCCCCceeEEEEEEeChHHHH-HHHc
Confidence 33333666665555554454443 2223 245677777764 88999999999999996 5442
Q ss_pred ---cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813 92 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC 168 (321)
Q Consensus 92 ---~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (321)
....+-=-.|.+.+++.+|. .+.
T Consensus 186 ikPS~RGElEITd~i~~~i~~G~------------------------------------------------------~~~ 211 (286)
T COG1209 186 IKPSARGELEITDAIDLYIEKGY------------------------------------------------------LVV 211 (286)
T ss_pred CCCCCCCceEehHHHHHHHHcCc------------------------------------------------------EEE
Confidence 11122223466788877762 122
Q ss_pred EEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEE
Q 020813 169 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI 248 (321)
Q Consensus 169 ~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svI 248 (321)
.. ..+++|.|.||++++++|++.++..... .+ ...+.|.+ .+. ++.|...++++..+.|++|-+
T Consensus 212 ~~--~~~G~WlDtGt~~slleA~~~i~~~~~~-~G------~~~~~~~~------~~~-~~~i~~~~~~~~~~~l~~~~~ 275 (286)
T COG1209 212 AI--LIRGWWLDTGTPESLLEANNFVRTVSKR-QG------FKIACPEE------IAW-NGWIDGPGLIGLASQLEKSGY 275 (286)
T ss_pred EE--EccceEEecCChhhHHHHHHHHHHHHhh-cC------CEEeChhH------EEE-ecEEechHhhccccchhhcCc
Confidence 22 3456999999999999999988652211 11 12223332 222 344444444555555555566
Q ss_pred CCCCEECCC
Q 020813 249 GRHCRIGSN 257 (321)
Q Consensus 249 g~~~~Ig~~ 257 (321)
|+...++.+
T Consensus 276 G~y~~~~~~ 284 (286)
T COG1209 276 GQYLLELLR 284 (286)
T ss_pred chhhhhhhc
Confidence 665555443
No 176
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.33 E-value=5e-06 Score=68.51 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=18.0
Q ss_pred ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEc
Q 020813 279 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK 312 (321)
Q Consensus 279 ~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~ 312 (321)
.++|+++|.||.++.+ .++.||++++|++++.+.
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 4555555555555554 245555555555555543
No 177
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.30 E-value=5.5e-07 Score=79.17 Aligned_cols=62 Identities=32% Similarity=0.520 Sum_probs=49.1
Q ss_pred CCCcccEEEecCCc--cEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813 24 KPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 85 (321)
Q Consensus 24 ~~~~~~l~~lD~~~--~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl 85 (321)
+.++..++++|.++ .+.+|.+...+....+.++++++++||++.+++||+|+|||||++|||
T Consensus 153 ~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 153 KTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 33455899999987 566666554443344557999999999999999999999999999985
No 178
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.28 E-value=4e-06 Score=85.81 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=24.9
Q ss_pred eEECCCCEECCCcEEec------eEECCCCEECCCcEEe-ceEECCCCEEC
Q 020813 246 SVIGRHCRIGSNVKVVN------SVVMNHVTIGDGCSIQ-GSVICSNAQLQ 289 (321)
Q Consensus 246 svIg~~~~Ig~~~~I~~------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig 289 (321)
+.||++|.|+++|.|.. ....++++||++|.|+ +|+|.++++||
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IG 667 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMG 667 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEEC
Confidence 36666666666666642 2234455555555555 55555555555
No 179
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.24 E-value=7.3e-07 Score=82.45 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCCccceEEeEeHHHHHHHHhcc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 146 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (321)
++++++|+|+|++++|+ +++.. ...+..-.|+++.+++++
T Consensus 210 s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~------------------------------------ 252 (302)
T PRK13389 210 SNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE------------------------------------ 252 (302)
T ss_pred ccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcC------------------------------------
Confidence 57899999999999995 55431 112233358888887742
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813 147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 194 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~ 194 (321)
++.+| ..++||.|+|++++|++++..+
T Consensus 253 -------------------~v~~~--~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 253 -------------------TVEAY--HMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred -------------------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence 35677 4479999999999999998886
No 180
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.22 E-value=2.5e-06 Score=73.36 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=40.5
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-ce
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GS 280 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~~ 280 (321)
..|||.|+||.+..+... -+++||+-+ +||.+|.|..++.++ +-.|++||-||.++.|- +.
T Consensus 149 vdihpaa~ig~gilldha----tgvvigeTA-----vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV 219 (269)
T KOG4750|consen 149 VDIHPAAKIGKGILLDHA----TGVVIGETA-----VVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNV 219 (269)
T ss_pred ccccchhhcccceeeccc----cceeeccee-----EeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCe
Confidence 456777777776655321 133444433 444444444444443 33566666666665543 56
Q ss_pred EECCCCEECcCcEe
Q 020813 281 VICSNAQLQERVAL 294 (321)
Q Consensus 281 iI~~~~~Ig~~~~i 294 (321)
.||.|++|++|+++
T Consensus 220 ~IGegavIaAGsvV 233 (269)
T KOG4750|consen 220 TIGEGAVIAAGSVV 233 (269)
T ss_pred eECCCcEEeccceE
Confidence 66666666666544
No 181
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.22 E-value=9e-07 Score=80.20 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=48.9
Q ss_pred CCCccceEEeEeHHHHHHHHhccc--cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 147 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~--~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (321)
++++++|+|+|++++|..+..... .....-.|+++.+++++
T Consensus 195 ~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~------------------------------------- 237 (267)
T cd02541 195 SNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE------------------------------------- 237 (267)
T ss_pred CceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-------------------------------------
Confidence 468899999999999975533111 11122236777777643
Q ss_pred cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhc
Q 020813 148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI 195 (321)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l 195 (321)
++++| +.++||.|+||+++|+++|+++.
T Consensus 238 ------------------~v~~~--~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 238 ------------------PVYAY--VFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred ------------------CEEEE--EeeeEEEeCCCHHHHHHHHHHHh
Confidence 45677 44689999999999999999863
No 182
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.20 E-value=5.9e-06 Score=84.60 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=7.8
Q ss_pred EECCCCEECCCcEEe
Q 020813 247 VIGRHCRIGSNVKVV 261 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~ 261 (321)
.||+||.|+++|.+.
T Consensus 133 ~IG~~~~I~~~v~l~ 147 (695)
T TIGR02353 133 TIGAGTIVRKEVMLL 147 (695)
T ss_pred EECCCCEECCCCEEE
Confidence 455555555555544
No 183
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.20 E-value=1.7e-06 Score=77.06 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=47.9
Q ss_pred CCCccceEEeEeHHHHHHHHhcc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 146 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (321)
++++++|+|+|++++|+ ++++. ......-.|+++.+++++
T Consensus 166 ~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l~~~g------------------------------------ 208 (240)
T cd02538 166 SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEYLEKG------------------------------------ 208 (240)
T ss_pred CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHHHHhC------------------------------------
Confidence 46889999999999996 44421 111112248888887764
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813 147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV 194 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~ 194 (321)
++.++..+..+||.||||+++|+++++.+
T Consensus 209 -------------------~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 209 -------------------KLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred -------------------CeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 12344334459999999999999998864
No 184
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.20 E-value=1e-06 Score=79.41 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=45.1
Q ss_pred CCCccceEEeEeHHHHHHHHhcccc--CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF 147 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~--~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (321)
++++++|+|+|++++|..+...... ....-.|+++.+++++
T Consensus 195 ~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~------------------------------------- 237 (260)
T TIGR01099 195 SNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE------------------------------------- 237 (260)
T ss_pred CceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC-------------------------------------
Confidence 4688999999999999766432211 1112236777777642
Q ss_pred cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHH
Q 020813 148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI 190 (321)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~ 190 (321)
++++| +.++||.|||++++|+++
T Consensus 238 ------------------~v~~~--~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 238 ------------------TVYAY--KFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred ------------------CEEEE--EcceEEEeCCCHHHHhhC
Confidence 46677 457999999999999874
No 185
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.17 E-value=2.1e-06 Score=69.16 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=36.2
Q ss_pred eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEec
Q 020813 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN 262 (321)
Q Consensus 211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~ 262 (321)
..|.|+|.+-..+.|.+++.|+++|++...+.+. .-+||+|+.|++.+.|.|
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 4456777666666666677777777777666553 468888888888887764
No 186
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.11 E-value=2.6e-06 Score=76.68 Aligned_cols=106 Identities=8% Similarity=0.180 Sum_probs=71.3
Q ss_pred ccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeee---------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813 28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI---------------RADLMDAHMYAFNRSVLQEVLDQK 92 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~---------------~s~l~d~giYi~~~~vl~~~l~~~ 92 (321)
|.++..|+..++..|...+++++.... . ....++.+++ .++++++|+|+|++++++.+ .+.
T Consensus 127 D~i~~~dl~~ll~~h~~~~~~~tl~~~-~--~~~~~g~v~~d~~g~V~~~~ekp~~~~~~i~~Giyi~~~~l~~~l-~~~ 202 (253)
T cd02524 127 DGVSDVNINALIEFHRSHGKLATVTAV-H--PPGRFGELDLDDDGQVTSFTEKPQGDGGWINGGFFVLEPEVFDYI-DGD 202 (253)
T ss_pred CEEECCCHHHHHHHHHHcCCCEEEEEe-c--CCCcccEEEECCCCCEEEEEECCCCCCceEEEEEEEECHHHHHhh-ccc
Confidence 456677887777788887777764211 1 1122222222 23589999999999999644 322
Q ss_pred ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEe
Q 020813 93 DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172 (321)
Q Consensus 93 ~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 172 (321)
..++..|+++.|++++ ++++|
T Consensus 203 --~~~~~~d~l~~li~~~-------------------------------------------------------~v~~~-- 223 (253)
T cd02524 203 --DTVFEREPLERLAKDG-------------------------------------------------------ELMAY-- 223 (253)
T ss_pred --cchhhHHHHHHHHhcC-------------------------------------------------------CEEEE--
Confidence 3345578888888754 34566
Q ss_pred cCccceeeccCHHHHHHHchhhcc
Q 020813 173 SNSKYCVRLNSIQAFMDINRDVIG 196 (321)
Q Consensus 173 ~~~~~w~~i~t~~~y~~~~~~~l~ 196 (321)
+.++||.+|+|+++|.++...+..
T Consensus 224 ~~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 224 KHTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred ecCCEEEeCcCHHHHHHHHHHHHc
Confidence 457899999999999999866643
No 187
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.05 E-value=3.4e-05 Score=66.17 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=17.0
Q ss_pred CcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813 222 KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV 261 (321)
Q Consensus 222 ~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~ 261 (321)
...+|.++.++.++.+-. ..+.+||.++.+++++.|.
T Consensus 67 ~~~iG~~~~i~~~~~~~~---~~~i~ig~~~~i~~~v~i~ 103 (190)
T COG0110 67 NLTIGDLCFIGVNVVILV---GEGITIGDNVVVGPNVTIY 103 (190)
T ss_pred ceEECCeeEEcCCcEEEe---cCCeEECCCceECCCcEEe
Confidence 334444444444444311 1123456666666665554
No 188
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.03 E-value=2.7e-06 Score=74.78 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=44.6
Q ss_pred ccEEEecCCccEEEee--ccccccccceeecHHHHhhcCeeeec-------------CCCccceEEeEeHHHHHHHHhcc
Q 020813 28 YNIIGMDPTKQFLLHI--ATGAELEKDTRIRKSILRAVGQMDIR-------------ADLMDAHMYAFNRSVLQEVLDQK 92 (321)
Q Consensus 28 ~~l~~lD~~~~~~~h~--~~~a~~t~~l~i~~~~~~~~~~~~~~-------------s~l~d~giYi~~~~vl~~~l~~~ 92 (321)
|.++..|+..++..|. ..++.++... .+......++.+++. ++++++|+|+|++++|..+.+.
T Consensus 106 D~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~~~~~l~~l~~~- 183 (221)
T cd06422 106 DILWDGDLAPLLLLHAWRMDALLLLLPL-VRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQILSPELFAGIPPG- 183 (221)
T ss_pred CeeeCCCHHHHHHHHHhccCCCceEEEE-EEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEEcHHHHhhCCcC-
Confidence 3566667777777776 3444333211 111112233444332 3578999999999999755432
Q ss_pred ccCCCCccchhHHHHHhh
Q 020813 93 DKFQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 93 ~~~~si~~dlip~l~~~~ 110 (321)
. ..-.|+++.|++++
T Consensus 184 --~-~~~~d~~~~l~~~~ 198 (221)
T cd06422 184 --K-FSLNPLWDRAIAAG 198 (221)
T ss_pred --c-ccHHHHHHHHHHcC
Confidence 1 22358888887653
No 189
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=98.01 E-value=6.5e-06 Score=75.55 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=46.9
Q ss_pred EEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhcc-
Q 020813 31 IGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQK- 92 (321)
Q Consensus 31 ~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~~- 92 (321)
+..|+.+++..|.+.+++.+. ..+++ ...+|+.+++. ++++++|+|+|++.+++ ++++-
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~-~l~~~~ 187 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVVE-IARQLK 187 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECCCCeEEEEEECCCCCCCCEEEEEEEEEchHHHH-HHhhcC
Confidence 455666677777766666654 22222 23456666553 57899999999999986 44321
Q ss_pred --ccCCCCccchhHHHHHhh
Q 020813 93 --DKFQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 93 --~~~~si~~dlip~l~~~~ 110 (321)
...+-.-.|+++.+++++
T Consensus 188 ~~~~ge~eitdv~~~~l~~g 207 (286)
T TIGR01207 188 PSARGELEITDLNRVYLEEG 207 (286)
T ss_pred CCCCCcEeHHHHHHHHHHcC
Confidence 111112248888887764
No 190
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.94 E-value=9.8e-06 Score=74.59 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=47.9
Q ss_pred EEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhc--
Q 020813 31 IGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQ-- 91 (321)
Q Consensus 31 ~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~-- 91 (321)
++.|+..++..|..++++.+.. ..+ ....+|+.+++. ++++++|+|+|++++++. +++
T Consensus 115 ~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~-~~~~~ 191 (292)
T PRK15480 115 YGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEM-AKNLK 191 (292)
T ss_pred eccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHH-HhhcC
Confidence 4677777888887766666642 222 123355555442 678999999999999964 432
Q ss_pred -c-ccCCCCccchhHHHHHhh
Q 020813 92 -K-DKFQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 92 -~-~~~~si~~dlip~l~~~~ 110 (321)
. ....++ .|+++.+++++
T Consensus 192 ~~~~ge~~i-td~~~~~l~~g 211 (292)
T PRK15480 192 PSARGELEI-TDINRIYMEQG 211 (292)
T ss_pred CCCCCeeEh-HHHHHHHHhcC
Confidence 1 111234 47888887765
No 191
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.94 E-value=9e-06 Score=65.58 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec--------------eEECCCCEECCCcEEeceEECCCCE
Q 020813 205 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR--------------SVIGRHCRIGSNVKVVNSVVMNHVT 270 (321)
Q Consensus 205 ~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~--------------svIg~~~~Ig~~~~I~~siI~~~v~ 270 (321)
..+.+...+||.|.+-..+ ++.+||+|+.|++.+.|.+ -+||.+-...-+|...--.++++-+
T Consensus 27 vti~~gcVvHP~a~~iA~a---GPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NV 103 (190)
T KOG4042|consen 27 VTIKEGCVVHPFAVFIATA---GPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNV 103 (190)
T ss_pred eEecCCcEecceEEEEccc---CCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcce
Confidence 3455667778887775443 4556777777766665543 3677777666666665556666666
Q ss_pred ECCCcEEe-ceEECCCCEECcCcEec
Q 020813 271 IGDGCSIQ-GSVICSNAQLQERVALK 295 (321)
Q Consensus 271 Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 295 (321)
|+..|.++ ++++.++|.||++|.+.
T Consensus 104 ieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 104 IESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred EeeeeEecCCcEEcCCceeccceEEe
Confidence 66666665 56666666666555554
No 192
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.93 E-value=4.2e-05 Score=66.20 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC-eEECCCcEEcCCc
Q 020813 232 GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAGC 309 (321)
Q Consensus 232 g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~-~iIg~~~~V~~~~ 309 (321)
...+.||.++.++-.++|+.+.+|+++.|...++..++.|+.+|.+. |.+..+++.||+++.|.+ -++...-.+++++
T Consensus 20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV 99 (277)
T COG4801 20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADV 99 (277)
T ss_pred eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccce
Confidence 33444555556666688888888888888888888888888888887 777777888888887764 3444445555555
Q ss_pred EEcCC
Q 020813 310 EYKGE 314 (321)
Q Consensus 310 ~i~~~ 314 (321)
.|++.
T Consensus 100 ~Iegg 104 (277)
T COG4801 100 IIEGG 104 (277)
T ss_pred EEecC
Confidence 55553
No 193
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.83 E-value=1.5e-05 Score=70.65 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCCccceEEeEeHHHHHHHHhccc---cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS 146 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~---~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (321)
++++++|+|+|++++++.+..... ...++ .|+++.+++++
T Consensus 163 ~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~~~i~~g------------------------------------ 205 (236)
T cd04189 163 SNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQWLIDRG------------------------------------ 205 (236)
T ss_pred CCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHHHHHHcC------------------------------------
Confidence 568899999999999975422111 11122 47888887654
Q ss_pred ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcc
Q 020813 147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG 196 (321)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~ 196 (321)
.++.+| +.++||.+++|+++|.++++.++.
T Consensus 206 ------------------~~v~~~--~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 206 ------------------RRVGYS--IVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred ------------------CcEEEE--EcCceEEeCCCHHHHHHHHHHHHh
Confidence 245666 457899999999999999998764
No 194
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.78 E-value=2.3e-05 Score=68.84 Aligned_cols=58 Identities=24% Similarity=0.335 Sum_probs=43.2
Q ss_pred ccEEEecCCc-cEEEeeccccccc-cceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813 28 YNIIGMDPTK-QFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL 85 (321)
Q Consensus 28 ~~l~~lD~~~-~~~~h~~~~a~~t-~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl 85 (321)
+.++.+|.++ .++.+.+....-. ..++++++++.+|+.+.+++||+|+|||+|+++||
T Consensus 158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 3578888763 4444333322222 24678999999999999999999999999999985
No 195
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.70 E-value=0.0003 Score=60.21 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=18.3
Q ss_pred eEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813 263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD 296 (321)
Q Consensus 263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 296 (321)
++|+++|-||.++.|. +.+||+++.||+++++.+
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 4555555555555554 455555555555555543
No 196
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.56 E-value=0.00032 Score=60.86 Aligned_cols=95 Identities=20% Similarity=0.355 Sum_probs=74.5
Q ss_pred eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECc
Q 020813 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQE 290 (321)
Q Consensus 213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~ 290 (321)
...++.||+++.+. ..++++...+|+++.|...+++.+|+|+..|++. |.+..++.+||+++.|+ .-++..+-.||+
T Consensus 19 v~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~ 97 (277)
T COG4801 19 VKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA 97 (277)
T ss_pred EeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence 34445555555552 3356777888888888888999999999999997 77788999999999998 677888899999
Q ss_pred CcEecCeEECCCcEEcCC
Q 020813 291 RVALKDCQVGQGYVVSAG 308 (321)
Q Consensus 291 ~~~i~~~iIg~~~~V~~~ 308 (321)
++.|++..+..+-++-++
T Consensus 98 dV~Ieggfva~g~Ivirn 115 (277)
T COG4801 98 DVIIEGGFVAKGWIVIRN 115 (277)
T ss_pred ceEEecCeeecceEEEcC
Confidence 999988888777655443
No 197
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.51 E-value=5.6e-05 Score=65.80 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=46.2
Q ss_pred cEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhcc
Q 020813 29 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQK 92 (321)
Q Consensus 29 ~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~~ 92 (321)
.++..|+.+++..|.+++++.+.... +.....+++.+.+. ++++++|+|+|++++++ ++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~-~l~~~ 183 (217)
T cd04181 106 VLTDLDLSELLRFHREKGADATIAVK-EVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD-YIPEI 183 (217)
T ss_pred eecCcCHHHHHHHHHhcCCCEEEEEE-EcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEEEECHHHHH-hhhhc
Confidence 45556666666667777766554221 11111222222221 37899999999999995 55432
Q ss_pred c-cCCCCccchhHHHHHh
Q 020813 93 D-KFQSLKQDVLPYLVRS 109 (321)
Q Consensus 93 ~-~~~si~~dlip~l~~~ 109 (321)
. ...++-.|+++.++++
T Consensus 184 ~~~~~~~~~~~~~~l~~~ 201 (217)
T cd04181 184 LPRGEDELTDAIPLLIEE 201 (217)
T ss_pred CCcccccHHHHHHHHHhc
Confidence 2 2355667888888764
No 198
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.44 E-value=0.00021 Score=62.50 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=46.5
Q ss_pred CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE 149 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (321)
++++++|+|+|++.+++.+ .+. ...++ .++++.+++++
T Consensus 158 ~~~~~~Giy~~~~~~~~~i-~~~-~~~~l-~~~~~~~i~~~--------------------------------------- 195 (220)
T cd06426 158 SFLVNAGIYVLEPEVLDLI-PKN-EFFDM-PDLIEKLIKEG--------------------------------------- 195 (220)
T ss_pred CCeEEEEEEEEcHHHHhhc-CCC-CCcCH-HHHHHHHHHCC---------------------------------------
Confidence 5688999999999999644 432 22333 47888887764
Q ss_pred cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHc
Q 020813 150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDIN 191 (321)
Q Consensus 150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~ 191 (321)
.++.+| +.+++|.++||+++|+++|
T Consensus 196 ---------------~~i~~~--~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 196 ---------------KKVGVF--PIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred ---------------CcEEEE--EeCCeEEeCCCHHHHHhhC
Confidence 245666 4568999999999999885
No 199
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.43 E-value=0.00022 Score=62.27 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=46.2
Q ss_pred CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE 149 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (321)
+.++++|+|+|++++|+.+... ..++..|+++.+++++
T Consensus 162 ~~~~~~Giy~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~--------------------------------------- 199 (223)
T cd06915 162 PGLINGGVYLLRKEILAEIPAD---AFSLEADVLPALVKRG--------------------------------------- 199 (223)
T ss_pred CCcEEEEEEEECHHHHhhCCcc---CCChHHHHHHHHHhcC---------------------------------------
Confidence 5689999999999999754322 2345668888887653
Q ss_pred cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHH
Q 020813 150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI 190 (321)
Q Consensus 150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~ 190 (321)
++.+|. .+++|.+|+++++|.++
T Consensus 200 ----------------~v~~~~--~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 200 ----------------RLYGFE--VDGYFIDIGIPEDYARA 222 (223)
T ss_pred ----------------cEEEEe--cCCeEEecCCHHHHHhh
Confidence 356663 46899999999999987
No 200
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.40 E-value=7.6e-05 Score=64.63 Aligned_cols=37 Identities=22% Similarity=0.584 Sum_probs=28.1
Q ss_pred ccceEEeEeHHHHHHHHhcc--ccCCCCccchhHHHHHh
Q 020813 73 MDAHMYAFNRSVLQEVLDQK--DKFQSLKQDVLPYLVRS 109 (321)
Q Consensus 73 ~d~giYi~~~~vl~~~l~~~--~~~~si~~dlip~l~~~ 109 (321)
+++|+|+|++++|..+++.. ....++..|++|.|+++
T Consensus 147 ~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~ 185 (200)
T cd02508 147 ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK 185 (200)
T ss_pred hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc
Confidence 99999999999987666531 22456677999988765
No 201
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.38 E-value=0.00028 Score=42.92 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=2.6
Q ss_pred CCCCEECCCc
Q 020813 249 GRHCRIGSNV 258 (321)
Q Consensus 249 g~~~~Ig~~~ 258 (321)
|++|.||.++
T Consensus 5 G~~~~ig~~~ 14 (34)
T PF14602_consen 5 GDNCFIGANS 14 (34)
T ss_dssp -TTEEE-TT-
T ss_pred CCCEEECccc
Confidence 3333333333
No 202
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.11 E-value=0.00061 Score=41.44 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=4.9
Q ss_pred EECCCCEECCCcE
Q 020813 247 VIGRHCRIGSNVK 259 (321)
Q Consensus 247 vIg~~~~Ig~~~~ 259 (321)
.||++|.|++|+.
T Consensus 19 ~igd~~~i~~g~~ 31 (34)
T PF14602_consen 19 TIGDGVIIGAGVV 31 (34)
T ss_dssp EE-TTEEE-TTEE
T ss_pred EEcCCCEECCCCE
Confidence 4444444444443
No 203
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00091 Score=57.90 Aligned_cols=77 Identities=25% Similarity=0.459 Sum_probs=45.2
Q ss_pred ECCCCEECCCCeEec---eEECCCCEECCCcEEeceEECCCCEECC---CcEEeceEECCCCEECcCcEe-cCeEECCCc
Q 020813 231 LGEGSQMGDKCSVKR---SVIGRHCRIGSNVKVVNSVVMNHVTIGD---GCSIQGSVICSNAQLQERVAL-KDCQVGQGY 303 (321)
Q Consensus 231 Ig~~~~I~~~~~I~~---svIg~~~~Ig~~~~I~~siI~~~v~Ig~---~~~I~~~iI~~~~~Ig~~~~i-~~~iIg~~~ 303 (321)
|.+.+.||+|-.+.+ .+||+-++||++++| +.++++|. ++--+.-.|++|+.||+|+.| .+..||+|+
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGega 225 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGA 225 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCc
Confidence 445555555544443 366666666666644 44444432 122224577788888877744 567777777
Q ss_pred EEcCCcEEc
Q 020813 304 VVSAGCEYK 312 (321)
Q Consensus 304 ~V~~~~~i~ 312 (321)
+|++|+++-
T Consensus 226 vIaAGsvV~ 234 (269)
T KOG4750|consen 226 VIAAGSVVL 234 (269)
T ss_pred EEeccceEE
Confidence 777777653
No 204
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.01 E-value=0.0016 Score=57.95 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.4
Q ss_pred CCCccceEEeEeHHHHHHHHh
Q 020813 70 ADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~ 90 (321)
+++.++|||+|++++|+.++.
T Consensus 174 ~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 174 PVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred cccEEEEEEecCHHHHHHHHh
Confidence 589999999999999987654
No 205
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.72 E-value=0.0028 Score=56.18 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.1
Q ss_pred CCCccceEEeEeHHHHHHHHh
Q 020813 70 ADLMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~ 90 (321)
++++++|||+|++++|+.+..
T Consensus 171 ~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 171 PYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred ceeEEEEEEEECHHHHHHHHh
Confidence 578999999999999986654
No 206
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.67 E-value=0.0017 Score=57.26 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCccceEEeEeHH-HHHHHHhc----cc-c-CCCCccchhHHHHHhh
Q 020813 70 ADLMDAHMYAFNRS-VLQEVLDQ----KD-K-FQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 70 s~l~d~giYi~~~~-vl~~~l~~----~~-~-~~si~~dlip~l~~~~ 110 (321)
++++++|+|+|+++ ++..++++ .. . ....-.|+++.+++++
T Consensus 161 ~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g 208 (231)
T cd04183 161 SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDG 208 (231)
T ss_pred CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcC
Confidence 67899999999997 55444432 11 1 1112357888887765
No 207
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.66 E-value=0.0037 Score=55.03 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=24.9
Q ss_pred CCCccceEEeEeHHHHHHHHhcc------ccCCCCccchhHHHHH
Q 020813 70 ADLMDAHMYAFNRSVLQEVLDQK------DKFQSLKQDVLPYLVR 108 (321)
Q Consensus 70 s~l~d~giYi~~~~vl~~~l~~~------~~~~si~~dlip~l~~ 108 (321)
.+++++|+|+|++++++.+.+.- ......-.|+++.++.
T Consensus 158 ~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~ 202 (229)
T cd02523 158 IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLIS 202 (229)
T ss_pred hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHh
Confidence 45789999999999987553310 0123334466776665
No 208
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.61 E-value=0.0027 Score=56.23 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=20.1
Q ss_pred eeEEEEecCccceeeccCHHHHHHHch
Q 020813 166 KCCVYIASNSKYCVRLNSIQAFMDINR 192 (321)
Q Consensus 166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~ 192 (321)
++.+|. .+++|.||+++++|..++.
T Consensus 212 ~v~~~~--~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 212 KIRMVE--VAATSIGVDTPEDLERVRA 236 (238)
T ss_pred ceEEEE--eCCCCCCCCCHHHHHHHHH
Confidence 455663 5789999999999998865
No 209
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=96.36 E-value=0.0085 Score=57.89 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=38.1
Q ss_pred EECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC
Q 020813 236 QMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS 284 (321)
Q Consensus 236 ~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~ 284 (321)
.+.+++.|.+|++..++.+|+++.|++|.|..++.||++|.|.++-+..
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 4456667778888888888888888888888888888888887764443
No 210
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=96.12 E-value=0.014 Score=56.39 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEE
Q 020813 228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVV 265 (321)
Q Consensus 228 ~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI 265 (321)
++++..++.+++++.|.+|.|+.++.||++|.|.++-+
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~ 321 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDI 321 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcc
Confidence 66666667777777777777777777777776665533
No 211
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=95.40 E-value=0.089 Score=55.63 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=16.2
Q ss_pred CccceEEeEeHHHHHHHHh
Q 020813 72 LMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 72 l~d~giYi~~~~vl~~~l~ 90 (321)
|+|+|+|+|+....+.++.
T Consensus 228 l~D~g~~~~~~~a~~~L~~ 246 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMK 246 (974)
T ss_pred EEeeeEEEEChHHHHHHHH
Confidence 8999999999998876653
No 212
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=91.86 E-value=0.85 Score=37.48 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=37.3
Q ss_pred EeceEECCC-CEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 243 VKRSVIGRH-CRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 243 I~~svIg~~-~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
+...+..+. +.|++..+|...+..+...| +|...++....+.+.|...+++.+-+=+....|..|+.+.+.
T Consensus 48 ~~G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 48 FEGDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEEEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence 344445544 66666666665554444444 444444455555555655555555444445555555555443
No 213
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=89.62 E-value=0.59 Score=35.59 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=41.8
Q ss_pred CCEECCCcEEeceEECCCCEECCCcEEeceEEC-CCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813 251 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVIC-SNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314 (321)
Q Consensus 251 ~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~-~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~ 314 (321)
...|+.++.|...+-.+.+.|. +. +.+.+.. ..+.|...+.+.+.+-.+...|.+++.+.+.
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~ 98 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGN 98 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEE
Confidence 6677777777766666666663 33 5544444 5667887778877777777777777777653
No 214
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=89.35 E-value=0.54 Score=49.92 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=40.4
Q ss_pred eEeceEECCCCEECCCcE-EeceEECCCCEECCCcEEeceE-ECCCCEECcCcEecCeEECC
Q 020813 242 SVKRSVIGRHCRIGSNVK-VVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERVALKDCQVGQ 301 (321)
Q Consensus 242 ~I~~svIg~~~~Ig~~~~-I~~siI~~~v~Ig~~~~I~~~i-I~~~~~Ig~~~~i~~~iIg~ 301 (321)
.+.+|++..++.++++.. |++|.|+.+++||++|+|.++- ...+..|.+++.|...-++.
T Consensus 333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~~ 394 (974)
T PRK13412 333 FVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVGD 394 (974)
T ss_pred EEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcCC
Confidence 456677777777777743 7777778888888887777764 33456777777766443333
No 215
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=87.74 E-value=1.2 Score=38.88 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhh
Q 020813 71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQ 110 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~ 110 (321)
+++++|+|+|++..|..+++... .....-.|+++.+++++
T Consensus 163 ~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g 206 (229)
T cd02540 163 REVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADG 206 (229)
T ss_pred ceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCC
Confidence 68899999999887766665321 11223357777777754
No 216
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=87.18 E-value=0.69 Score=45.53 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=18.2
Q ss_pred EEecCccceeeccCHHHHHHHc
Q 020813 170 YIASNSKYCVRLNSIQAFMDIN 191 (321)
Q Consensus 170 ~i~~~~~~w~~i~t~~~y~~~~ 191 (321)
++.+.+.+|.|+|++.+++++.
T Consensus 260 ~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 260 VVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred EEEeCCCCccccCCHHHHHHhh
Confidence 3447788999999999999864
No 217
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=84.55 E-value=0.98 Score=40.86 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=48.9
Q ss_pred ecCCCccceEEeEeHHHHHHHHhccc--c-CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCC
Q 020813 68 IRADLMDAHMYAFNRSVLQEVLDQKD--K-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAST 144 (321)
Q Consensus 68 ~~s~l~d~giYi~~~~vl~~~l~~~~--~-~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (321)
..|||.-.|=|||+|++++ +|++.. . .+=.-.|-+-.|++.
T Consensus 198 APSnlai~GRYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~----------------------------------- 241 (291)
T COG1210 198 APSNLAIVGRYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKK----------------------------------- 241 (291)
T ss_pred CCcceeeeeeeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhh-----------------------------------
Confidence 4699999999999999996 655421 0 111122444444443
Q ss_pred CCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcc
Q 020813 145 PSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG 196 (321)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~ 196 (321)
..+++| .++|--.|+|+...|++++.++..
T Consensus 242 --------------------~~v~a~--~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 242 --------------------EPVLAY--VFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred --------------------CcEEEE--EecccEEccCCcccHHHHHHHHHh
Confidence 256777 457778899999999999987744
No 218
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=68.73 E-value=12 Score=28.31 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=10.4
Q ss_pred CEECCCcEEeceEECCCCEECcCcEe
Q 020813 269 VTIGDGCSIQGSVICSNAQLQERVAL 294 (321)
Q Consensus 269 v~Ig~~~~I~~~iI~~~~~Ig~~~~i 294 (321)
+.|...+.+.+.+-.+...|..++.+
T Consensus 70 v~i~~~~~v~G~i~~~~l~v~~ga~i 95 (101)
T PF04519_consen 70 VEIYGTARVEGDITAGKLEVEGGASI 95 (101)
T ss_pred EEEeCCEEEEEEEEECEEEEeCCCEE
Confidence 33444444443333333444433333
No 219
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=66.66 E-value=4.4 Score=36.76 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.0
Q ss_pred CccceEEeEeHHHHHHHHh
Q 020813 72 LMDAHMYAFNRSVLQEVLD 90 (321)
Q Consensus 72 l~d~giYi~~~~vl~~~l~ 90 (321)
+.|+|||+|++++|...++
T Consensus 189 ~wNsGiyi~~~~~l~~~l~ 207 (274)
T cd02509 189 LWNSGIFLFRAKTFLEELK 207 (274)
T ss_pred EEECceeeeeHHHHHHHHH
Confidence 6799999999998876665
No 220
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=58.50 E-value=43 Score=27.43 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred CEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC
Q 020813 235 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD 296 (321)
Q Consensus 235 ~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 296 (321)
++|++...|+..+.-+...| +|...++....+.+.|...+.+.+-|=++...|..|+++.+
T Consensus 58 iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEG 118 (146)
T ss_pred EEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEe
Confidence 55555555544433333333 33344445566778888888888777778888888887774
No 221
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=45.95 E-value=25 Score=33.82 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred EECCCCEECCCcEEeceEE--C---CCCEECcCcEecCeEECCCc
Q 020813 264 VVMNHVTIGDGCSIQGSVI--C---SNAQLQERVALKDCQVGQGY 303 (321)
Q Consensus 264 iI~~~v~Ig~~~~I~~~iI--~---~~~~Ig~~~~i~~~iIg~~~ 303 (321)
.|..+|.+|.|+.+.+++| + +.-.|.+|+++++|+|-.+.
T Consensus 449 tVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~ 493 (498)
T KOG2638|consen 449 TVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNL 493 (498)
T ss_pred EEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccc
Confidence 4667777777777775443 2 22334555555555444443
No 222
>PLN02917 CMP-KDO synthetase
Probab=43.41 E-value=45 Score=30.64 Aligned_cols=18 Identities=11% Similarity=0.229 Sum_probs=15.3
Q ss_pred CCccceEEeEeHHHHHHH
Q 020813 71 DLMDAHMYAFNRSVLQEV 88 (321)
Q Consensus 71 ~l~d~giYi~~~~vl~~~ 88 (321)
.+.++|||.|+...|..+
T Consensus 219 ~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 219 YLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred eEEEEEEEEeCHHHHHHH
Confidence 477999999999999744
No 223
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=35.84 E-value=52 Score=31.76 Aligned_cols=42 Identities=19% Similarity=0.466 Sum_probs=22.6
Q ss_pred EECCCCEECCCcEEeceEE-----CCCCEECCCcEEeceEECCCCEE
Q 020813 247 VIGRHCRIGSNVKVVNSVV-----MNHVTIGDGCSIQGSVICSNAQL 288 (321)
Q Consensus 247 vIg~~~~Ig~~~~I~~siI-----~~~v~Ig~~~~I~~~iI~~~~~I 288 (321)
.|..+|.+|.++++.+++| ++.-.|.+|+++++++|..+..|
T Consensus 449 tVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 449 TVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred EEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEeccccc
Confidence 4455556666665554432 22345566666666666555544
No 224
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=25.45 E-value=1.7e+02 Score=26.02 Aligned_cols=22 Identities=0% Similarity=0.170 Sum_probs=18.4
Q ss_pred ccceeeccCHHHHHHHchhhcc
Q 020813 175 SKYCVRLNSIQAFMDINRDVIG 196 (321)
Q Consensus 175 ~~~w~~i~t~~~y~~~~~~~l~ 196 (321)
..+|+++.+++++.++.+.+..
T Consensus 209 g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 209 GLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred CceeEecCCHHHHHHHHHHHHH
Confidence 5789999999999998776643
Done!