Query 020815
Match_columns 321
No_of_seqs 490 out of 2736
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2960 Protein involved in th 100.0 5.6E-54 1.2E-58 353.4 15.0 306 1-320 1-312 (328)
2 PLN02661 Putative thiazole syn 100.0 2.9E-52 6.3E-57 377.1 21.6 296 23-320 27-322 (357)
3 COG1635 THI4 Ribulose 1,5-bisp 100.0 4.2E-48 9E-53 320.6 16.2 252 62-320 2-254 (262)
4 TIGR00292 thiazole biosynthesi 100.0 5.1E-43 1.1E-47 309.2 17.7 245 71-320 2-248 (254)
5 PRK04176 ribulose-1,5-biphosph 100.0 1.1E-41 2.5E-46 301.5 18.0 247 67-320 2-249 (257)
6 PF01946 Thi4: Thi4 family; PD 100.0 3E-41 6.5E-46 281.9 15.4 229 74-307 1-230 (230)
7 PF03486 HI0933_like: HI0933-l 99.8 9.8E-18 2.1E-22 157.5 13.8 166 91-272 1-202 (409)
8 COG2081 Predicted flavoprotein 99.7 5.8E-17 1.3E-21 147.2 15.7 167 90-273 3-204 (408)
9 PTZ00139 Succinate dehydrogena 99.7 6.9E-16 1.5E-20 152.9 15.0 145 89-244 28-231 (617)
10 PLN00128 Succinate dehydrogena 99.7 9.7E-16 2.1E-20 151.9 15.2 145 89-244 49-252 (635)
11 PRK06452 sdhA succinate dehydr 99.7 2.2E-15 4.7E-20 148.2 17.1 143 90-243 5-199 (566)
12 PRK09078 sdhA succinate dehydr 99.7 2.1E-15 4.5E-20 149.2 16.3 145 89-244 11-214 (598)
13 PRK08958 sdhA succinate dehydr 99.7 2.6E-15 5.7E-20 148.0 16.9 143 90-243 7-207 (588)
14 PRK06175 L-aspartate oxidase; 99.6 3.6E-15 7.8E-20 142.2 16.3 141 90-243 4-190 (433)
15 KOG2415 Electron transfer flav 99.6 1.7E-15 3.7E-20 137.2 12.7 205 89-312 75-315 (621)
16 PRK09231 fumarate reductase fl 99.6 5E-15 1.1E-19 146.0 17.0 147 89-244 3-198 (582)
17 COG0029 NadB Aspartate oxidase 99.6 2.3E-15 5E-20 139.8 13.5 175 92-278 9-267 (518)
18 PRK06481 fumarate reductase fl 99.6 8.5E-15 1.9E-19 142.3 17.3 142 90-243 61-252 (506)
19 PRK07573 sdhA succinate dehydr 99.6 8.7E-15 1.9E-19 145.5 17.0 145 89-244 34-234 (640)
20 PLN02815 L-aspartate oxidase 99.6 4.4E-15 9.6E-20 146.1 14.7 145 89-244 28-224 (594)
21 TIGR01176 fum_red_Fp fumarate 99.6 9.8E-15 2.1E-19 143.7 17.0 146 90-244 3-197 (580)
22 PRK05945 sdhA succinate dehydr 99.6 8.2E-15 1.8E-19 144.5 16.5 144 90-243 3-198 (575)
23 PRK06069 sdhA succinate dehydr 99.6 5.7E-15 1.2E-19 145.7 15.0 144 90-243 5-201 (577)
24 PF00890 FAD_binding_2: FAD bi 99.6 8E-15 1.7E-19 139.3 15.2 141 92-243 1-204 (417)
25 PRK07395 L-aspartate oxidase; 99.6 6.9E-15 1.5E-19 144.0 14.5 141 89-242 8-197 (553)
26 PRK08274 tricarballylate dehyd 99.6 1.8E-14 4E-19 138.9 17.2 142 90-243 4-193 (466)
27 PRK07803 sdhA succinate dehydr 99.6 1.7E-14 3.7E-19 143.3 16.9 145 89-243 7-214 (626)
28 PRK08626 fumarate reductase fl 99.6 1.4E-14 3.1E-19 144.3 15.7 144 90-244 5-222 (657)
29 PRK07057 sdhA succinate dehydr 99.6 2E-14 4.4E-19 142.0 16.5 145 89-244 11-213 (591)
30 PRK06854 adenylylsulfate reduc 99.6 2E-14 4.4E-19 142.3 16.5 144 90-242 11-195 (608)
31 TIGR00551 nadB L-aspartate oxi 99.6 2.3E-14 4.9E-19 138.8 16.0 142 90-244 2-191 (488)
32 PRK07121 hypothetical protein; 99.6 2.7E-14 5.8E-19 138.6 16.4 141 89-242 19-239 (492)
33 PRK12834 putative FAD-binding 99.6 2.3E-14 5E-19 140.7 15.9 149 90-243 4-228 (549)
34 TIGR01812 sdhA_frdA_Gneg succi 99.6 3.2E-14 6.9E-19 140.3 16.6 141 92-243 1-192 (566)
35 PRK09077 L-aspartate oxidase; 99.6 2.8E-14 6.1E-19 139.6 15.7 145 89-244 7-209 (536)
36 PRK06263 sdhA succinate dehydr 99.6 3.6E-14 7.9E-19 139.1 16.2 143 89-243 6-198 (543)
37 PRK08641 sdhA succinate dehydr 99.6 5.3E-14 1.1E-18 139.0 16.9 145 90-244 3-202 (589)
38 PRK07804 L-aspartate oxidase; 99.6 4.7E-14 1E-18 138.1 16.3 147 89-243 15-211 (541)
39 PRK08275 putative oxidoreducta 99.6 5.2E-14 1.1E-18 138.3 16.3 145 89-243 8-201 (554)
40 PRK08205 sdhA succinate dehydr 99.6 9.8E-14 2.1E-18 137.0 16.2 142 90-243 5-207 (583)
41 PRK07512 L-aspartate oxidase; 99.6 5.6E-14 1.2E-18 136.7 14.3 141 89-243 8-198 (513)
42 PRK10157 putative oxidoreducta 99.5 1.3E-13 2.9E-18 131.4 15.8 135 90-242 5-164 (428)
43 PRK06185 hypothetical protein; 99.5 3.6E-13 7.8E-18 127.6 18.6 135 89-242 5-169 (407)
44 PRK08071 L-aspartate oxidase; 99.5 1.1E-13 2.4E-18 134.5 15.2 140 90-243 3-191 (510)
45 COG0644 FixC Dehydrogenases (f 99.5 1.2E-13 2.7E-18 130.4 15.0 140 90-245 3-155 (396)
46 PRK12837 3-ketosteroid-delta-1 99.5 1.9E-13 4.1E-18 133.2 16.3 141 89-242 6-235 (513)
47 TIGR02061 aprA adenosine phosp 99.5 1.7E-13 3.8E-18 135.0 16.0 141 92-243 1-192 (614)
48 PRK08013 oxidoreductase; Provi 99.5 3.5E-13 7.5E-18 127.5 17.2 145 90-256 3-177 (400)
49 PRK12845 3-ketosteroid-delta-1 99.5 1.6E-13 3.5E-18 134.6 15.4 44 89-134 15-58 (564)
50 PF01494 FAD_binding_3: FAD bi 99.5 1.8E-13 3.9E-18 126.3 14.8 141 90-254 1-179 (356)
51 PTZ00306 NADH-dependent fumara 99.5 1.8E-13 3.9E-18 144.3 16.4 148 88-243 407-621 (1167)
52 PRK08401 L-aspartate oxidase; 99.5 2.3E-13 5E-18 131.1 15.6 136 91-244 2-177 (466)
53 PRK12844 3-ketosteroid-delta-1 99.5 2E-13 4.3E-18 134.1 15.3 141 90-243 6-270 (557)
54 PRK10015 oxidoreductase; Provi 99.5 1.4E-13 3.1E-18 131.1 13.6 138 90-244 5-166 (429)
55 PRK13800 putative oxidoreducta 99.5 2.6E-13 5.6E-18 140.1 16.2 146 89-244 12-207 (897)
56 PF01266 DAO: FAD dependent ox 99.5 3.8E-13 8.3E-18 124.3 15.2 132 92-240 1-201 (358)
57 TIGR01811 sdhA_Bsu succinate d 99.5 2.5E-13 5.5E-18 134.3 14.6 141 93-243 1-197 (603)
58 COG0654 UbiH 2-polyprenyl-6-me 99.5 5.8E-13 1.2E-17 125.5 16.3 138 90-254 2-169 (387)
59 PRK12835 3-ketosteroid-delta-1 99.5 3.9E-13 8.5E-18 132.6 14.9 41 89-130 10-50 (584)
60 PRK08773 2-octaprenyl-3-methyl 99.5 1.5E-12 3.2E-17 122.9 17.4 136 89-243 5-170 (392)
61 TIGR02032 GG-red-SF geranylger 99.5 1.2E-12 2.5E-17 118.1 15.9 136 91-243 1-149 (295)
62 TIGR01813 flavo_cyto_c flavocy 99.5 6.9E-13 1.5E-17 127.0 14.9 139 92-243 1-193 (439)
63 COG1053 SdhA Succinate dehydro 99.5 1.8E-13 3.9E-18 133.3 10.3 143 90-242 6-202 (562)
64 PRK08244 hypothetical protein; 99.5 2.3E-12 5E-17 125.2 17.9 132 90-242 2-159 (493)
65 PRK07190 hypothetical protein; 99.5 1.8E-12 4E-17 125.3 16.9 139 90-257 5-175 (487)
66 PRK05192 tRNA uridine 5-carbox 99.5 7.9E-13 1.7E-17 128.6 14.2 137 90-242 4-157 (618)
67 PRK06184 hypothetical protein; 99.5 2.2E-12 4.7E-17 125.6 17.4 141 90-256 3-177 (502)
68 PLN02985 squalene monooxygenas 99.5 3.1E-12 6.7E-17 124.3 18.1 136 89-243 42-209 (514)
69 KOG1298 Squalene monooxygenase 99.5 3.3E-13 7.1E-18 121.4 10.3 140 89-247 44-213 (509)
70 PRK12842 putative succinate de 99.5 1.8E-12 3.8E-17 128.0 16.6 44 86-130 5-48 (574)
71 PRK09126 hypothetical protein; 99.5 3E-12 6.6E-17 120.6 17.4 135 90-243 3-168 (392)
72 PRK06617 2-octaprenyl-6-methox 99.5 2.6E-12 5.7E-17 120.5 16.9 133 91-243 2-161 (374)
73 PF12831 FAD_oxidored: FAD dep 99.5 5.6E-14 1.2E-18 133.9 5.6 135 92-239 1-147 (428)
74 PRK08849 2-octaprenyl-3-methyl 99.5 2.7E-12 5.8E-17 120.8 16.5 136 90-243 3-168 (384)
75 PRK07364 2-octaprenyl-6-methox 99.4 2.6E-12 5.6E-17 122.0 16.4 136 90-243 18-182 (415)
76 PRK06134 putative FAD-binding 99.4 2.4E-12 5.1E-17 127.2 16.4 60 172-243 219-279 (581)
77 PRK06126 hypothetical protein; 99.4 3.4E-12 7.3E-17 125.5 17.2 136 89-242 6-188 (545)
78 PRK12839 hypothetical protein; 99.4 2.5E-12 5.5E-17 126.5 15.7 41 89-130 7-47 (572)
79 PRK07608 ubiquinone biosynthes 99.4 3.8E-12 8.2E-17 119.8 16.4 132 90-242 5-167 (388)
80 TIGR01989 COQ6 Ubiquinone bios 99.4 4.2E-12 9.1E-17 121.5 16.8 146 91-256 1-192 (437)
81 PRK05714 2-octaprenyl-3-methyl 99.4 4.8E-12 1E-16 119.9 17.0 137 90-243 2-169 (405)
82 PRK07045 putative monooxygenas 99.4 4.6E-12 1E-16 119.3 16.8 128 90-242 5-165 (388)
83 PF01134 GIDA: Glucose inhibit 99.4 3.3E-12 7.1E-17 118.3 15.1 133 92-240 1-150 (392)
84 PRK11101 glpA sn-glycerol-3-ph 99.4 4.3E-12 9.2E-17 124.5 16.7 142 90-242 6-211 (546)
85 COG0579 Predicted dehydrogenas 99.4 4.4E-12 9.5E-17 118.7 15.6 139 90-242 3-211 (429)
86 PRK08020 ubiF 2-octaprenyl-3-m 99.4 6.7E-12 1.4E-16 118.3 17.0 135 90-243 5-170 (391)
87 PRK12843 putative FAD-binding 99.4 3.5E-12 7.6E-17 125.9 15.7 61 171-243 222-283 (578)
88 PRK06834 hypothetical protein; 99.4 4.5E-12 9.7E-17 122.7 16.0 131 90-243 3-157 (488)
89 PRK06183 mhpA 3-(3-hydroxyphen 99.4 4.4E-12 9.6E-17 124.5 16.1 134 90-242 10-174 (538)
90 PRK07494 2-octaprenyl-6-methox 99.4 9.5E-12 2.1E-16 117.1 17.4 129 90-243 7-168 (388)
91 PRK08850 2-octaprenyl-6-methox 99.4 8.9E-12 1.9E-16 118.1 17.1 134 90-242 4-168 (405)
92 COG1249 Lpd Pyruvate/2-oxoglut 99.4 1.1E-12 2.3E-17 124.7 10.6 136 89-243 3-148 (454)
93 KOG1335 Dihydrolipoamide dehyd 99.4 2.9E-12 6.4E-17 115.3 12.6 54 90-144 39-92 (506)
94 PRK06467 dihydrolipoamide dehy 99.4 1.6E-12 3.5E-17 125.4 11.7 136 90-242 4-148 (471)
95 PRK08132 FAD-dependent oxidore 99.4 1.6E-11 3.5E-16 120.7 18.5 135 89-243 22-186 (547)
96 PLN02546 glutathione reductase 99.4 6.2E-12 1.3E-16 123.1 15.3 131 89-242 78-228 (558)
97 TIGR00275 flavoprotein, HI0933 99.4 9.1E-12 2E-16 117.8 15.9 160 94-271 1-195 (400)
98 PRK07333 2-octaprenyl-6-methox 99.4 1.6E-11 3.4E-16 116.1 17.6 131 91-242 2-167 (403)
99 PRK06115 dihydrolipoamide dehy 99.4 2.6E-12 5.5E-17 123.9 12.1 136 90-242 3-148 (466)
100 TIGR02485 CobZ_N-term precorri 99.4 5.8E-12 1.2E-16 120.4 14.4 134 95-243 1-184 (432)
101 PRK07843 3-ketosteroid-delta-1 99.4 9.3E-12 2E-16 122.4 16.0 41 89-130 6-46 (557)
102 PRK08243 4-hydroxybenzoate 3-m 99.4 1E-11 2.2E-16 117.2 15.6 135 90-244 2-165 (392)
103 TIGR01984 UbiH 2-polyprenyl-6- 99.4 1.6E-11 3.5E-16 115.2 16.6 132 92-242 1-162 (382)
104 TIGR01988 Ubi-OHases Ubiquinon 99.4 1.6E-11 3.5E-16 115.2 16.5 132 92-243 1-164 (385)
105 PTZ00058 glutathione reductase 99.4 4.5E-12 9.7E-17 124.1 13.0 101 90-192 48-156 (561)
106 PRK14694 putative mercuric red 99.4 3.8E-12 8.2E-17 122.8 12.2 137 88-242 4-152 (468)
107 PLN02507 glutathione reductase 99.4 6.4E-12 1.4E-16 121.9 13.7 137 89-242 24-179 (499)
108 PRK11728 hydroxyglutarate oxid 99.4 2E-11 4.3E-16 115.2 16.7 136 90-242 2-204 (393)
109 TIGR02023 BchP-ChlP geranylger 99.4 2E-11 4.3E-16 115.1 16.0 141 91-244 1-157 (388)
110 TIGR03329 Phn_aa_oxid putative 99.4 1.9E-11 4.1E-16 117.7 16.0 42 89-130 23-65 (460)
111 TIGR01421 gluta_reduc_1 glutat 99.4 4.7E-12 1E-16 121.5 11.5 130 90-242 2-141 (450)
112 TIGR01424 gluta_reduc_2 glutat 99.3 3.5E-12 7.6E-17 122.3 10.2 131 90-242 2-142 (446)
113 PRK06416 dihydrolipoamide dehy 99.3 5.7E-12 1.2E-16 121.4 11.5 134 90-242 4-146 (462)
114 PRK05976 dihydrolipoamide dehy 99.3 4.6E-12 9.9E-17 122.4 10.8 138 90-242 4-154 (472)
115 TIGR03364 HpnW_proposed FAD de 99.3 2.2E-11 4.7E-16 113.8 14.9 39 91-130 1-39 (365)
116 PRK08163 salicylate hydroxylas 99.3 2.5E-11 5.4E-16 114.6 15.3 132 90-244 4-168 (396)
117 PRK07236 hypothetical protein; 99.3 2.8E-11 6.2E-16 113.9 15.6 130 89-243 5-155 (386)
118 PRK05249 soluble pyridine nucl 99.3 1.9E-11 4.1E-16 117.8 14.3 53 90-143 5-57 (461)
119 PLN02697 lycopene epsilon cycl 99.3 1.5E-11 3.1E-16 119.4 13.0 135 89-242 107-248 (529)
120 PRK06475 salicylate hydroxylas 99.3 5.5E-11 1.2E-15 112.5 16.4 132 91-242 3-167 (400)
121 TIGR02028 ChlP geranylgeranyl 99.3 4.5E-11 9.8E-16 113.0 15.7 144 91-244 1-162 (398)
122 COG2072 TrkA Predicted flavopr 99.3 1.4E-11 3E-16 117.6 12.3 137 90-245 8-147 (443)
123 TIGR01377 soxA_mon sarcosine o 99.3 5.3E-11 1.2E-15 111.6 16.0 134 91-242 1-200 (380)
124 PRK07588 hypothetical protein; 99.3 5.7E-11 1.2E-15 112.0 15.8 127 92-245 2-161 (391)
125 PRK11445 putative oxidoreducta 99.3 8.1E-11 1.8E-15 109.4 16.4 133 91-244 2-159 (351)
126 PRK06370 mercuric reductase; V 99.3 1.8E-11 4E-16 118.0 12.5 129 90-242 5-145 (463)
127 PRK07538 hypothetical protein; 99.3 9.2E-11 2E-15 111.5 17.1 134 92-243 2-166 (413)
128 PRK06847 hypothetical protein; 99.3 5.6E-11 1.2E-15 111.3 15.5 131 90-244 4-165 (375)
129 PRK05732 2-octaprenyl-6-methox 99.3 1.1E-10 2.5E-15 109.9 17.4 137 90-243 3-170 (395)
130 PLN00093 geranylgeranyl diphos 99.3 1.5E-10 3.2E-15 110.9 18.3 144 90-243 39-200 (450)
131 PRK12266 glpD glycerol-3-phosp 99.3 1E-10 2.2E-15 113.9 17.3 41 89-130 5-45 (508)
132 TIGR01423 trypano_reduc trypan 99.3 3.4E-11 7.4E-16 116.4 13.8 141 90-242 3-163 (486)
133 PRK06116 glutathione reductase 99.3 1E-11 2.2E-16 119.3 10.2 129 90-242 4-143 (450)
134 PRK08294 phenol 2-monooxygenas 99.3 1.2E-10 2.5E-15 116.1 17.7 148 90-256 32-219 (634)
135 PRK13369 glycerol-3-phosphate 99.3 1E-10 2.2E-15 113.9 16.8 41 89-130 5-45 (502)
136 PRK00711 D-amino acid dehydrog 99.3 6.9E-11 1.5E-15 112.3 15.4 58 169-242 200-257 (416)
137 COG0578 GlpA Glycerol-3-phosph 99.3 3.1E-11 6.7E-16 115.3 12.8 141 89-241 11-224 (532)
138 PRK13748 putative mercuric red 99.3 5E-11 1.1E-15 117.6 14.5 54 89-144 97-150 (561)
139 TIGR01438 TGR thioredoxin and 99.3 4.8E-11 1E-15 115.5 14.0 136 90-242 2-155 (484)
140 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 9.4E-11 2E-15 110.6 15.6 137 90-244 2-165 (390)
141 PLN02172 flavin-containing mon 99.3 9.5E-11 2.1E-15 112.5 15.7 141 90-243 10-174 (461)
142 TIGR01373 soxB sarcosine oxida 99.3 7.9E-11 1.7E-15 111.6 14.9 58 170-243 183-241 (407)
143 PRK12409 D-amino acid dehydrog 99.3 1.5E-10 3.2E-15 109.9 16.7 35 91-126 2-36 (410)
144 PLN02463 lycopene beta cyclase 99.3 1.3E-10 2.8E-15 111.0 16.3 134 90-244 28-171 (447)
145 PRK11259 solA N-methyltryptoph 99.3 9.8E-11 2.1E-15 109.6 15.4 135 90-242 3-204 (376)
146 PTZ00367 squalene epoxidase; P 99.3 1.5E-10 3.3E-15 113.4 17.1 147 89-243 32-220 (567)
147 PRK05868 hypothetical protein; 99.3 1.5E-10 3.2E-15 108.5 16.2 127 92-243 3-161 (372)
148 PRK06996 hypothetical protein; 99.3 2.5E-10 5.5E-15 107.9 17.4 133 90-241 11-173 (398)
149 KOG0405 Pyridine nucleotide-di 99.3 6.3E-11 1.4E-15 105.6 12.0 138 89-243 19-166 (478)
150 PRK06327 dihydrolipoamide dehy 99.3 4E-11 8.6E-16 116.0 11.6 138 90-242 4-157 (475)
151 COG0492 TrxB Thioredoxin reduc 99.3 5.6E-11 1.2E-15 107.7 11.7 113 90-243 3-116 (305)
152 PRK07251 pyridine nucleotide-d 99.2 9.5E-11 2.1E-15 112.2 13.8 123 90-242 3-130 (438)
153 PRK01747 mnmC bifunctional tRN 99.2 1.9E-10 4.1E-15 115.6 16.3 136 90-243 260-464 (662)
154 PRK14727 putative mercuric red 99.2 1.2E-10 2.5E-15 112.8 14.1 54 90-144 16-69 (479)
155 PLN02464 glycerol-3-phosphate 99.2 2.3E-10 5.1E-15 113.8 16.5 65 168-242 230-296 (627)
156 TIGR01790 carotene-cycl lycope 99.2 9.4E-11 2E-15 110.4 12.9 131 92-242 1-141 (388)
157 TIGR02053 MerA mercuric reduct 99.2 7.5E-11 1.6E-15 113.7 12.2 131 91-242 1-140 (463)
158 PF13738 Pyr_redox_3: Pyridine 99.2 2.3E-11 4.9E-16 104.0 7.6 130 94-243 1-139 (203)
159 PRK08010 pyridine nucleotide-d 99.2 1.6E-10 3.5E-15 110.7 14.1 124 90-242 3-131 (441)
160 PRK06753 hypothetical protein; 99.2 3.1E-10 6.7E-15 106.3 15.6 125 92-242 2-152 (373)
161 TIGR01350 lipoamide_DH dihydro 99.2 5.7E-11 1.2E-15 114.5 10.7 133 91-242 2-143 (461)
162 PRK06292 dihydrolipoamide dehy 99.2 1E-10 2.3E-15 112.6 12.5 66 90-157 3-72 (460)
163 TIGR00136 gidA glucose-inhibit 99.2 2.4E-10 5.2E-15 111.3 14.6 136 91-242 1-154 (617)
164 TIGR01292 TRX_reduct thioredox 99.2 2E-10 4.4E-15 103.9 13.1 112 91-242 1-112 (300)
165 PRK07818 dihydrolipoamide dehy 99.2 8.7E-11 1.9E-15 113.4 11.2 53 90-144 4-56 (466)
166 PTZ00153 lipoamide dehydrogena 99.2 6E-11 1.3E-15 117.9 9.7 56 89-145 115-171 (659)
167 COG0445 GidA Flavin-dependent 99.2 5.2E-11 1.1E-15 112.1 8.6 136 90-241 4-157 (621)
168 TIGR01320 mal_quin_oxido malat 99.2 8E-10 1.7E-14 106.8 16.9 64 168-242 176-240 (483)
169 PTZ00052 thioredoxin reductase 99.2 1.9E-10 4.1E-15 111.8 12.4 54 90-144 5-66 (499)
170 PRK06912 acoL dihydrolipoamide 99.2 3.3E-10 7.2E-15 109.1 13.2 132 92-242 2-144 (458)
171 PRK05257 malate:quinone oxidor 99.2 1.6E-09 3.5E-14 104.8 17.7 37 90-126 5-42 (494)
172 PF05834 Lycopene_cycl: Lycope 99.2 3.2E-10 6.9E-15 106.3 12.4 131 92-243 1-143 (374)
173 PTZ00383 malate:quinone oxidor 99.2 6.2E-10 1.3E-14 107.5 14.6 60 168-242 209-273 (497)
174 KOG2404 Fumarate reductase, fl 99.2 2.7E-10 5.8E-15 100.7 10.8 141 92-243 11-207 (477)
175 PRK07846 mycothione reductase; 99.1 2.5E-10 5.5E-15 109.6 11.0 129 90-242 1-140 (451)
176 PF00732 GMC_oxred_N: GMC oxid 99.1 9.4E-10 2E-14 99.7 12.7 58 175-242 197-258 (296)
177 TIGR02730 carot_isom carotene 99.1 1.6E-09 3.4E-14 105.4 14.9 57 170-241 229-285 (493)
178 PRK15317 alkyl hydroperoxide r 99.1 1.2E-09 2.6E-14 106.7 13.6 113 89-242 210-322 (517)
179 PRK13339 malate:quinone oxidor 99.1 2.9E-09 6.3E-14 102.6 15.5 38 89-126 5-43 (497)
180 PRK07845 flavoprotein disulfid 99.1 1E-09 2.2E-14 105.9 12.2 134 92-242 3-151 (466)
181 TIGR03219 salicylate_mono sali 99.1 3.9E-09 8.4E-14 100.4 15.3 125 92-242 2-159 (414)
182 TIGR03143 AhpF_homolog putativ 99.1 2E-09 4.4E-14 106.0 13.2 111 90-242 4-114 (555)
183 TIGR03452 mycothione_red mycot 99.0 2.3E-09 4.9E-14 103.1 12.9 129 90-242 2-143 (452)
184 PRK05675 sdhA succinate dehydr 99.0 1.8E-09 3.9E-14 106.5 12.3 131 103-244 1-191 (570)
185 COG0665 DadA Glycine/D-amino a 99.0 2.2E-09 4.7E-14 100.9 12.4 39 90-129 4-42 (387)
186 TIGR03140 AhpF alkyl hydropero 99.0 3.4E-09 7.4E-14 103.5 14.0 114 88-242 210-323 (515)
187 COG1233 Phytoene dehydrogenase 99.0 3.4E-09 7.3E-14 102.7 13.5 40 90-130 3-42 (487)
188 KOG2820 FAD-dependent oxidored 99.0 3.7E-09 8E-14 94.2 12.3 59 168-241 151-211 (399)
189 PRK13977 myosin-cross-reactive 99.0 8.5E-09 1.8E-13 99.8 15.3 41 90-130 22-65 (576)
190 TIGR02734 crtI_fam phytoene de 99.0 6.7E-09 1.4E-13 101.2 14.8 56 170-240 219-274 (502)
191 PLN02927 antheraxanthin epoxid 99.0 1.2E-08 2.7E-13 101.0 16.6 133 89-244 80-250 (668)
192 PRK10262 thioredoxin reductase 99.0 5.3E-09 1.1E-13 96.0 13.2 114 88-242 4-117 (321)
193 KOG4716 Thioredoxin reductase 99.0 7.3E-09 1.6E-13 92.3 13.4 142 89-243 18-174 (503)
194 KOG2311 NAD/FAD-utilizing prot 99.0 1.3E-09 2.8E-14 100.9 8.1 136 90-241 28-185 (679)
195 KOG2844 Dimethylglycine dehydr 99.0 4.2E-09 9.1E-14 101.1 11.7 136 90-242 39-243 (856)
196 PF04820 Trp_halogenase: Trypt 99.0 4.7E-09 1E-13 100.7 12.3 68 162-245 146-214 (454)
197 TIGR01372 soxA sarcosine oxida 99.0 1E-08 2.2E-13 107.2 15.1 124 90-242 163-286 (985)
198 PF00743 FMO-like: Flavin-bind 99.0 2.3E-09 5E-14 104.4 9.7 137 92-244 3-152 (531)
199 KOG0042 Glycerol-3-phosphate d 99.0 1.7E-09 3.8E-14 101.5 8.1 45 85-130 62-106 (680)
200 COG3573 Predicted oxidoreducta 99.0 1E-08 2.2E-13 91.4 12.4 152 90-243 5-229 (552)
201 TIGR02462 pyranose_ox pyranose 99.0 1.5E-08 3.2E-13 98.6 14.4 42 91-134 1-42 (544)
202 PRK07233 hypothetical protein; 98.9 1.9E-08 4.1E-13 95.9 15.0 38 92-130 1-38 (434)
203 KOG1399 Flavin-containing mono 98.9 1.2E-08 2.5E-13 96.9 12.8 138 90-242 6-153 (448)
204 TIGR02733 desat_CrtD C-3',4' d 98.9 5.2E-08 1.1E-12 94.8 16.7 39 91-130 2-40 (492)
205 PRK05329 anaerobic glycerol-3- 98.9 6.6E-08 1.4E-12 91.6 16.8 60 171-243 260-319 (422)
206 TIGR01789 lycopene_cycl lycope 98.9 1E-08 2.2E-13 96.0 11.1 124 92-242 1-138 (370)
207 PRK09897 hypothetical protein; 98.9 2.5E-08 5.5E-13 97.0 14.0 138 91-243 2-167 (534)
208 PTZ00363 rab-GDP dissociation 98.9 4.3E-08 9.4E-13 93.5 15.0 41 90-131 4-44 (443)
209 KOG2614 Kynurenine 3-monooxyge 98.9 1E-08 2.2E-13 94.1 9.8 138 91-244 3-165 (420)
210 COG2509 Uncharacterized FAD-de 98.9 4.9E-08 1.1E-12 90.5 13.9 88 170-275 173-262 (486)
211 TIGR03378 glycerol3P_GlpB glyc 98.9 4.6E-08 1E-12 91.8 14.0 59 170-241 263-321 (419)
212 PRK12769 putative oxidoreducta 98.9 3.9E-08 8.4E-13 98.8 14.1 39 90-129 327-365 (654)
213 PF07992 Pyr_redox_2: Pyridine 98.9 8.6E-09 1.9E-13 87.7 8.0 113 92-241 1-121 (201)
214 KOG2852 Possible oxidoreductas 98.8 1.5E-08 3.2E-13 88.6 8.9 141 91-242 11-208 (380)
215 TIGR01816 sdhA_forward succina 98.8 4.8E-08 1.1E-12 96.4 13.8 89 145-243 69-182 (565)
216 PF06039 Mqo: Malate:quinone o 98.8 9.3E-08 2E-12 89.4 14.2 64 170-242 181-244 (488)
217 PRK02106 choline dehydrogenase 98.8 1.3E-08 2.9E-13 100.4 9.1 57 177-243 207-263 (560)
218 PRK12775 putative trifunctiona 98.8 9.3E-08 2E-12 99.8 14.5 39 90-129 430-468 (1006)
219 PRK09754 phenylpropionate diox 98.8 2.3E-08 5.1E-13 94.5 9.1 135 91-296 145-279 (396)
220 PF13454 NAD_binding_9: FAD-NA 98.8 1.2E-07 2.6E-12 77.8 12.1 131 94-240 1-155 (156)
221 PRK08255 salicylyl-CoA 5-hydro 98.8 4.4E-08 9.6E-13 99.9 11.2 123 92-242 2-141 (765)
222 PRK09853 putative selenate red 98.7 5.1E-08 1.1E-12 100.2 10.6 97 90-242 539-635 (1019)
223 TIGR01810 betA choline dehydro 98.7 3.5E-08 7.7E-13 96.8 9.1 58 176-243 199-256 (532)
224 TIGR02731 phytoene_desat phyto 98.7 3E-07 6.5E-12 88.5 15.4 38 92-130 1-38 (453)
225 PF00070 Pyr_redox: Pyridine n 98.7 1.9E-07 4E-12 67.6 10.5 77 93-210 2-78 (80)
226 TIGR03862 flavo_PP4765 unchara 98.7 2.6E-07 5.6E-12 86.1 13.8 110 145-271 58-176 (376)
227 COG1231 Monoamine oxidase [Ami 98.7 1.7E-07 3.7E-12 87.2 12.5 42 89-131 6-47 (450)
228 PRK04965 NADH:flavorubredoxin 98.7 1.8E-07 3.8E-12 87.9 12.8 136 91-296 142-277 (377)
229 KOG2665 Predicted FAD-dependen 98.7 8.4E-08 1.8E-12 84.9 9.7 139 90-241 48-256 (453)
230 PRK12779 putative bifunctional 98.7 3.4E-08 7.4E-13 102.2 8.4 98 90-241 306-403 (944)
231 PLN02785 Protein HOTHEAD 98.7 1E-07 2.2E-12 94.2 10.9 33 90-124 55-87 (587)
232 PRK09564 coenzyme A disulfide 98.7 2.1E-07 4.5E-12 89.3 12.8 139 91-298 150-288 (444)
233 TIGR03315 Se_ygfK putative sel 98.7 6.2E-08 1.3E-12 99.9 8.7 40 90-130 537-576 (1012)
234 PF13450 NAD_binding_8: NAD(P) 98.7 3.1E-08 6.7E-13 69.3 4.4 36 95-131 1-36 (68)
235 PRK06115 dihydrolipoamide dehy 98.7 7.8E-07 1.7E-11 86.0 15.5 142 91-295 175-316 (466)
236 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 2.8E-07 6.1E-12 86.9 12.0 104 91-197 1-123 (433)
237 PRK05335 tRNA (uracil-5-)-meth 98.7 2E-07 4.3E-12 87.6 10.9 104 91-197 3-125 (436)
238 PLN02612 phytoene desaturase 98.6 7.4E-07 1.6E-11 88.0 15.4 40 89-129 92-131 (567)
239 COG3380 Predicted NAD/FAD-depe 98.6 1.6E-07 3.6E-12 81.6 9.2 38 92-130 3-40 (331)
240 TIGR03140 AhpF alkyl hydropero 98.6 6E-07 1.3E-11 87.8 14.3 154 91-319 353-506 (515)
241 PRK12831 putative oxidoreducta 98.6 5.2E-08 1.1E-12 93.9 6.2 41 89-130 139-179 (464)
242 KOG2853 Possible oxidoreductas 98.6 9.6E-07 2.1E-11 79.1 13.5 36 90-125 86-124 (509)
243 TIGR01350 lipoamide_DH dihydro 98.6 9.5E-07 2.1E-11 85.2 14.9 100 91-243 171-270 (461)
244 COG3075 GlpB Anaerobic glycero 98.6 5.3E-07 1.2E-11 80.4 11.8 58 171-241 259-316 (421)
245 KOG3855 Monooxygenase involved 98.6 7.6E-07 1.6E-11 81.6 13.0 149 90-257 36-227 (481)
246 PRK12771 putative glutamate sy 98.6 5.7E-07 1.2E-11 89.0 13.4 39 90-129 137-175 (564)
247 PRK12814 putative NADPH-depend 98.6 7.9E-07 1.7E-11 89.3 14.5 40 90-130 193-232 (652)
248 PRK06416 dihydrolipoamide dehy 98.6 1.1E-06 2.5E-11 84.7 15.1 140 91-295 173-312 (462)
249 COG1249 Lpd Pyruvate/2-oxoglut 98.6 6.6E-07 1.4E-11 85.4 13.1 137 92-294 175-312 (454)
250 TIGR02053 MerA mercuric reduct 98.6 1.2E-06 2.6E-11 84.6 15.1 101 91-243 167-267 (463)
251 PRK05976 dihydrolipoamide dehy 98.6 9.9E-07 2.1E-11 85.4 14.4 101 91-243 181-282 (472)
252 PF13434 K_oxygenase: L-lysine 98.6 1.2E-07 2.7E-12 87.5 7.4 138 90-241 2-158 (341)
253 COG1232 HemY Protoporphyrinoge 98.6 4.7E-07 1E-11 85.7 11.3 37 92-129 2-40 (444)
254 TIGR03385 CoA_CoA_reduc CoA-di 98.6 5.3E-07 1.2E-11 86.1 11.9 137 91-297 138-274 (427)
255 PRK06370 mercuric reductase; V 98.6 1.6E-06 3.6E-11 83.6 15.2 101 91-243 172-272 (463)
256 KOG1238 Glucose dehydrogenase/ 98.6 1E-06 2.3E-11 85.3 13.5 38 89-126 56-93 (623)
257 PRK06116 glutathione reductase 98.6 1E-06 2.2E-11 84.8 13.6 99 91-243 168-266 (450)
258 PRK07818 dihydrolipoamide dehy 98.6 2E-06 4.3E-11 83.1 15.5 102 91-243 173-274 (466)
259 COG3634 AhpF Alkyl hydroperoxi 98.6 5.8E-07 1.2E-11 80.7 10.7 98 174-296 393-491 (520)
260 TIGR02732 zeta_caro_desat caro 98.6 2.2E-06 4.8E-11 82.9 15.6 37 92-129 1-37 (474)
261 PRK13512 coenzyme A disulfide 98.6 4.6E-07 1E-11 86.8 10.7 114 92-242 3-117 (438)
262 PRK05249 soluble pyridine nucl 98.5 1.6E-06 3.4E-11 83.7 14.4 98 91-243 176-273 (461)
263 COG1148 HdrA Heterodisulfide r 98.5 1.8E-07 3.8E-12 87.3 7.3 82 90-198 124-205 (622)
264 COG2303 BetA Choline dehydroge 98.5 4.1E-07 8.8E-12 89.3 10.3 60 175-243 207-267 (542)
265 PRK06912 acoL dihydrolipoamide 98.5 1.6E-06 3.6E-11 83.5 14.2 99 91-243 171-269 (458)
266 PRK11749 dihydropyrimidine deh 98.5 1.8E-07 3.8E-12 90.2 7.3 97 90-241 140-236 (457)
267 KOG4254 Phytoene desaturase [C 98.5 4.2E-07 9.1E-12 84.1 9.2 41 89-130 13-53 (561)
268 PRK15317 alkyl hydroperoxide r 98.5 1.5E-06 3.4E-11 85.0 13.8 153 91-318 352-504 (517)
269 TIGR01316 gltA glutamate synth 98.5 1.3E-07 2.9E-12 90.8 6.0 40 89-129 132-171 (449)
270 TIGR01421 gluta_reduc_1 glutat 98.5 2.8E-06 6.1E-11 81.7 14.9 100 91-243 167-266 (450)
271 PRK09564 coenzyme A disulfide 98.5 7.7E-07 1.7E-11 85.4 10.9 113 92-242 2-115 (444)
272 PLN02507 glutathione reductase 98.5 2.7E-06 5.9E-11 82.8 14.8 138 91-295 204-341 (499)
273 PRK12778 putative bifunctional 98.5 1.7E-07 3.7E-12 95.7 6.7 40 89-129 430-469 (752)
274 PRK07251 pyridine nucleotide-d 98.5 2.2E-06 4.8E-11 82.1 13.8 97 91-243 158-254 (438)
275 PRK12810 gltD glutamate syntha 98.5 2.5E-07 5.5E-12 89.4 7.1 39 90-129 143-181 (471)
276 TIGR01424 gluta_reduc_2 glutat 98.5 3.6E-06 7.7E-11 80.9 14.9 98 91-243 167-264 (446)
277 PRK14989 nitrite reductase sub 98.5 2.6E-06 5.6E-11 87.6 14.5 139 91-296 146-285 (847)
278 TIGR01292 TRX_reduct thioredox 98.5 1.6E-06 3.5E-11 78.3 11.6 152 91-318 142-293 (300)
279 PRK14694 putative mercuric red 98.5 3.4E-06 7.3E-11 81.6 14.2 135 91-295 179-313 (468)
280 PRK07845 flavoprotein disulfid 98.4 4.2E-06 9E-11 80.9 14.4 138 91-295 178-315 (466)
281 TIGR01318 gltD_gamma_fam gluta 98.4 3.9E-07 8.5E-12 88.0 7.2 98 90-242 141-238 (467)
282 PRK14727 putative mercuric red 98.4 4.4E-06 9.6E-11 81.0 14.6 136 91-295 189-324 (479)
283 PRK06327 dihydrolipoamide dehy 98.4 5.1E-06 1.1E-10 80.5 14.8 102 91-243 184-285 (475)
284 TIGR02374 nitri_red_nirB nitri 98.4 2E-06 4.3E-11 88.1 12.5 136 91-296 141-276 (785)
285 PLN02487 zeta-carotene desatur 98.4 7.4E-06 1.6E-10 80.6 15.8 38 91-129 76-113 (569)
286 PRK06467 dihydrolipoamide dehy 98.4 5E-06 1.1E-10 80.5 14.5 101 91-243 175-275 (471)
287 PRK13748 putative mercuric red 98.4 3.9E-06 8.5E-11 83.0 14.1 136 91-295 271-406 (561)
288 PRK07846 mycothione reductase; 98.4 4.7E-06 1E-10 80.2 14.1 137 91-295 167-303 (451)
289 COG0446 HcaD Uncharacterized N 98.4 1.5E-06 3.2E-11 82.0 10.2 100 91-243 137-238 (415)
290 PLN02852 ferredoxin-NADP+ redu 98.4 6.1E-07 1.3E-11 86.5 7.5 37 91-128 27-65 (491)
291 PRK08010 pyridine nucleotide-d 98.4 6.2E-06 1.3E-10 79.1 14.3 97 91-243 159-255 (441)
292 PRK13512 coenzyme A disulfide 98.4 5.3E-06 1.1E-10 79.6 13.5 132 91-295 149-280 (438)
293 TIGR01423 trypano_reduc trypan 98.4 6.7E-06 1.4E-10 79.8 14.2 99 91-243 188-289 (486)
294 PTZ00052 thioredoxin reductase 98.4 6.1E-06 1.3E-10 80.4 13.9 96 92-243 184-279 (499)
295 PTZ00058 glutathione reductase 98.4 8E-06 1.7E-10 80.4 14.8 139 91-296 238-377 (561)
296 PRK04965 NADH:flavorubredoxin 98.4 4E-06 8.6E-11 78.8 12.1 108 91-242 3-111 (377)
297 PRK10262 thioredoxin reductase 98.4 7.7E-06 1.7E-10 75.1 13.4 162 91-319 147-308 (321)
298 PRK09754 phenylpropionate diox 98.4 1E-06 2.3E-11 83.3 7.8 107 91-242 4-112 (396)
299 PLN02268 probable polyamine ox 98.4 7.3E-07 1.6E-11 85.3 6.9 40 92-132 2-41 (435)
300 PRK12770 putative glutamate sy 98.4 1.1E-06 2.4E-11 81.7 7.6 39 90-129 18-56 (352)
301 TIGR01316 gltA glutamate synth 98.3 1.2E-05 2.5E-10 77.4 14.7 147 91-295 273-426 (449)
302 TIGR03452 mycothione_red mycot 98.3 8.7E-06 1.9E-10 78.4 13.6 97 91-243 170-266 (452)
303 PRK06567 putative bifunctional 98.3 1.2E-06 2.5E-11 89.6 7.4 39 90-129 383-421 (1028)
304 COG1252 Ndh NADH dehydrogenase 98.3 3.8E-06 8.1E-11 78.6 10.3 96 91-243 156-263 (405)
305 PRK06292 dihydrolipoamide dehy 98.3 1.3E-05 2.8E-10 77.4 14.4 100 91-243 170-269 (460)
306 PTZ00318 NADH dehydrogenase-li 98.3 4E-06 8.7E-11 80.0 10.7 93 92-242 175-280 (424)
307 COG0562 Glf UDP-galactopyranos 98.3 7.2E-07 1.6E-11 79.4 5.0 40 91-131 2-41 (374)
308 TIGR01438 TGR thioredoxin and 98.3 1.5E-05 3.2E-10 77.4 14.5 99 92-243 182-280 (484)
309 TIGR02352 thiamin_ThiO glycine 98.3 6.9E-06 1.5E-10 75.5 11.6 60 168-243 135-194 (337)
310 TIGR01317 GOGAT_sm_gam glutama 98.3 1.3E-06 2.8E-11 84.8 7.0 38 90-128 143-180 (485)
311 KOG0029 Amine oxidase [Seconda 98.3 7.2E-07 1.6E-11 86.2 5.2 40 90-130 15-54 (501)
312 PLN02546 glutathione reductase 98.3 1.3E-05 2.8E-10 78.9 14.0 139 91-295 253-391 (558)
313 TIGR00031 UDP-GALP_mutase UDP- 98.3 7.9E-07 1.7E-11 83.0 5.2 40 91-131 2-41 (377)
314 PRK07208 hypothetical protein; 98.3 8.1E-07 1.7E-11 86.1 5.3 40 90-130 4-43 (479)
315 PRK12831 putative oxidoreducta 98.3 2E-05 4.4E-10 76.0 14.6 108 91-242 282-396 (464)
316 KOG0404 Thioredoxin reductase 98.3 1.1E-05 2.5E-10 68.3 11.0 97 174-295 196-294 (322)
317 PRK11749 dihydropyrimidine deh 98.3 2.2E-05 4.9E-10 75.7 14.5 109 91-243 274-388 (457)
318 PTZ00318 NADH dehydrogenase-li 98.2 1.3E-05 2.9E-10 76.5 12.1 116 90-242 10-125 (424)
319 PTZ00188 adrenodoxin reductase 98.2 2.2E-06 4.7E-11 81.9 6.5 39 90-129 39-78 (506)
320 PRK12809 putative oxidoreducta 98.2 2E-06 4.4E-11 86.2 6.6 39 90-129 310-348 (639)
321 PRK11883 protoporphyrinogen ox 98.2 1.3E-06 2.9E-11 83.7 4.7 38 92-130 2-41 (451)
322 PTZ00153 lipoamide dehydrogena 98.2 3.3E-05 7.1E-10 77.3 14.3 108 91-243 313-428 (659)
323 COG4529 Uncharacterized protei 98.2 3.5E-05 7.6E-10 72.6 13.3 141 91-245 2-167 (474)
324 PRK13984 putative oxidoreducta 98.1 3.8E-06 8.3E-11 83.8 6.8 39 90-129 283-321 (604)
325 PLN02576 protoporphyrinogen ox 98.1 2.5E-06 5.4E-11 83.1 5.3 42 90-131 12-53 (496)
326 TIGR03169 Nterm_to_SelD pyridi 98.1 1.9E-05 4.1E-10 73.8 11.0 106 92-243 1-108 (364)
327 COG2907 Predicted NAD/FAD-bind 98.1 3.2E-05 6.9E-10 69.8 11.4 39 90-130 8-46 (447)
328 KOG1800 Ferredoxin/adrenodoxin 98.1 8.6E-06 1.9E-10 74.1 7.5 39 90-128 20-59 (468)
329 TIGR00562 proto_IX_ox protopor 98.1 3.2E-06 6.9E-11 81.5 5.0 41 91-131 3-46 (462)
330 PRK12810 gltD glutamate syntha 98.1 3.4E-05 7.4E-10 74.7 12.1 117 91-243 282-401 (471)
331 TIGR03377 glycerol3P_GlpA glyc 98.1 5.8E-05 1.3E-09 73.9 13.8 65 168-242 126-190 (516)
332 PRK12416 protoporphyrinogen ox 98.0 4.5E-06 9.8E-11 80.5 4.5 40 92-131 3-47 (463)
333 PLN02676 polyamine oxidase 98.0 6E-06 1.3E-10 80.1 5.3 45 85-130 21-66 (487)
334 PRK12778 putative bifunctional 98.0 0.00012 2.6E-09 75.0 14.9 109 91-243 571-687 (752)
335 PRK12770 putative glutamate sy 98.0 7.7E-05 1.7E-09 69.4 12.3 106 91-243 173-287 (352)
336 KOG1336 Monodehydroascorbate/f 98.0 5.7E-05 1.2E-09 70.9 11.1 159 90-316 213-375 (478)
337 COG3349 Uncharacterized conser 98.0 5.6E-06 1.2E-10 78.6 4.5 38 92-130 2-39 (485)
338 PLN02568 polyamine oxidase 98.0 9.3E-06 2E-10 79.6 5.5 40 90-130 5-49 (539)
339 PF00996 GDI: GDP dissociation 98.0 9.6E-05 2.1E-09 70.2 11.7 40 90-130 4-43 (438)
340 TIGR01318 gltD_gamma_fam gluta 97.9 0.00026 5.6E-09 68.5 14.9 109 91-243 283-399 (467)
341 TIGR02374 nitri_red_nirB nitri 97.9 4.1E-05 9E-10 78.6 9.8 106 93-242 1-108 (785)
342 KOG0399 Glutamate synthase [Am 97.9 0.00017 3.7E-09 73.7 13.5 39 90-129 1785-1823(2142)
343 PRK14989 nitrite reductase sub 97.9 4.4E-05 9.5E-10 78.7 9.7 106 92-242 5-113 (847)
344 TIGR03143 AhpF_homolog putativ 97.9 0.00018 3.8E-09 71.2 13.3 98 91-243 144-247 (555)
345 PF06100 Strep_67kDa_ant: Stre 97.9 0.00074 1.6E-08 64.3 16.5 40 91-130 3-45 (500)
346 TIGR03197 MnmC_Cterm tRNA U-34 97.9 0.00014 3E-09 68.4 11.6 59 168-243 133-191 (381)
347 COG0493 GltD NADPH-dependent g 97.9 1.3E-05 2.8E-10 76.7 4.5 74 91-195 124-197 (457)
348 COG1252 Ndh NADH dehydrogenase 97.9 7.8E-05 1.7E-09 69.9 9.4 108 91-243 4-112 (405)
349 COG0492 TrxB Thioredoxin reduc 97.9 0.00021 4.5E-09 65.0 12.0 132 91-295 144-276 (305)
350 PRK12779 putative bifunctional 97.9 0.00033 7.2E-09 73.1 14.7 108 91-242 448-562 (944)
351 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00016 3.4E-09 67.5 10.7 92 91-242 146-243 (364)
352 PLN02529 lysine-specific histo 97.8 2.4E-05 5.3E-10 78.9 5.3 40 90-130 160-199 (738)
353 KOG2403 Succinate dehydrogenas 97.8 2.2E-05 4.8E-10 74.6 4.1 144 90-244 55-256 (642)
354 PLN02328 lysine-specific histo 97.7 3.6E-05 7.7E-10 78.2 5.4 40 90-130 238-277 (808)
355 COG1251 NirB NAD(P)H-nitrite r 97.7 6.6E-05 1.4E-09 73.9 5.5 135 92-296 147-281 (793)
356 PRK13984 putative oxidoreducta 97.6 0.00088 1.9E-08 67.0 13.7 110 91-243 419-539 (604)
357 TIGR01372 soxA sarcosine oxida 97.6 0.00047 1E-08 72.6 11.9 93 91-242 318-411 (985)
358 PRK12809 putative oxidoreducta 97.6 0.0016 3.5E-08 65.5 14.8 108 91-242 452-567 (639)
359 PLN03000 amine oxidase 97.6 9.1E-05 2E-09 75.5 5.2 41 90-131 184-224 (881)
360 COG3486 IucD Lysine/ornithine 97.6 0.00076 1.7E-08 62.4 10.6 134 90-242 5-157 (436)
361 PF01593 Amino_oxidase: Flavin 97.5 0.00017 3.7E-09 67.9 6.3 30 100-130 1-30 (450)
362 COG1206 Gid NAD(FAD)-utilizing 97.5 0.00042 9.2E-09 62.3 7.9 104 91-197 4-126 (439)
363 KOG0685 Flavin-containing amin 97.5 0.00014 3E-09 68.4 5.0 41 90-130 21-61 (498)
364 PLN02976 amine oxidase 97.5 0.00015 3.2E-09 76.8 5.3 42 89-131 692-733 (1713)
365 KOG1276 Protoporphyrinogen oxi 97.4 0.00016 3.6E-09 67.0 4.2 41 90-130 11-52 (491)
366 TIGR01317 GOGAT_sm_gam glutama 97.4 0.004 8.6E-08 60.6 13.7 123 91-241 284-413 (485)
367 PF13434 K_oxygenase: L-lysine 97.3 0.0016 3.5E-08 60.3 10.1 134 90-239 190-338 (341)
368 PRK09853 putative selenate red 97.3 0.002 4.3E-08 67.1 11.6 106 91-242 669-779 (1019)
369 PLN02852 ferredoxin-NADP+ redu 97.3 0.01 2.2E-07 57.6 15.4 59 184-242 288-354 (491)
370 TIGR03315 Se_ygfK putative sel 97.3 0.0076 1.7E-07 63.0 15.2 106 90-242 666-776 (1012)
371 KOG3923 D-aspartate oxidase [A 97.3 0.0014 3E-08 58.2 8.3 36 91-126 4-45 (342)
372 KOG1439 RAB proteins geranylge 97.1 0.0047 1E-07 57.1 10.4 40 90-130 4-43 (440)
373 KOG2755 Oxidoreductase [Genera 96.5 0.01 2.3E-07 51.9 7.3 32 93-124 2-34 (334)
374 KOG2495 NADH-dehydrogenase (ub 96.5 0.027 5.9E-07 52.7 10.3 98 91-242 219-329 (491)
375 KOG1346 Programmed cell death 96.4 0.017 3.8E-07 53.7 8.7 98 91-242 348-449 (659)
376 PLN02172 flavin-containing mon 96.4 0.0064 1.4E-07 58.7 5.9 34 90-124 204-237 (461)
377 COG5044 MRS6 RAB proteins gera 96.1 0.015 3.2E-07 53.3 6.5 41 89-130 5-45 (434)
378 KOG1336 Monodehydroascorbate/f 96.0 0.022 4.7E-07 53.9 7.1 102 90-240 74-179 (478)
379 KOG0405 Pyridine nucleotide-di 95.7 0.042 9E-07 50.2 7.3 141 91-298 190-331 (478)
380 KOG3851 Sulfide:quinone oxidor 95.4 0.074 1.6E-06 48.1 7.8 35 90-124 39-74 (446)
381 COG3486 IucD Lysine/ornithine 95.1 0.32 7E-06 45.4 11.2 138 93-243 190-341 (436)
382 PF01210 NAD_Gly3P_dh_N: NAD-d 94.8 0.037 8E-07 45.2 3.9 31 93-124 2-32 (157)
383 PF02737 3HCDH_N: 3-hydroxyacy 94.7 0.046 1E-06 45.8 4.3 31 93-124 2-32 (180)
384 PF02558 ApbA: Ketopantoate re 94.5 0.053 1.1E-06 43.7 4.3 31 93-124 1-31 (151)
385 PRK01438 murD UDP-N-acetylmura 94.5 0.046 1E-06 53.1 4.5 33 91-124 17-49 (480)
386 PF13738 Pyr_redox_3: Pyridine 94.4 0.063 1.4E-06 45.3 4.5 34 90-124 167-200 (203)
387 PRK02705 murD UDP-N-acetylmura 94.3 0.053 1.1E-06 52.3 4.3 33 92-125 2-34 (459)
388 KOG4405 GDP dissociation inhib 94.2 0.051 1.1E-06 50.5 3.9 40 90-130 8-47 (547)
389 COG4716 Myosin-crossreactive a 94.2 0.13 2.9E-06 47.4 6.4 39 91-129 23-64 (587)
390 COG0569 TrkA K+ transport syst 94.1 0.062 1.3E-06 46.7 4.0 32 92-124 2-33 (225)
391 PF00743 FMO-like: Flavin-bind 94.1 0.22 4.8E-06 49.0 8.3 34 90-124 183-216 (531)
392 TIGR03385 CoA_CoA_reduc CoA-di 93.9 0.34 7.3E-06 46.2 9.0 47 182-242 55-103 (427)
393 KOG4716 Thioredoxin reductase 93.9 0.16 3.4E-06 46.3 6.1 100 92-242 200-300 (503)
394 COG1251 NirB NAD(P)H-nitrite r 93.7 0.41 8.9E-06 48.0 9.3 108 91-242 4-113 (793)
395 COG0446 HcaD Uncharacterized N 93.6 0.28 6E-06 46.0 7.8 107 93-244 1-108 (415)
396 PF03721 UDPG_MGDP_dh_N: UDP-g 93.5 0.084 1.8E-06 44.4 3.6 32 92-124 2-33 (185)
397 PF13241 NAD_binding_7: Putati 93.4 0.11 2.3E-06 39.2 3.8 33 90-123 7-39 (103)
398 PRK06567 putative bifunctional 93.4 1 2.2E-05 47.2 11.7 58 183-240 652-726 (1028)
399 TIGR01470 cysG_Nterm siroheme 92.9 0.15 3.3E-06 43.6 4.4 32 91-123 10-41 (205)
400 PRK06129 3-hydroxyacyl-CoA deh 92.9 0.13 2.8E-06 46.9 4.2 32 92-124 4-35 (308)
401 PRK14106 murD UDP-N-acetylmura 92.7 0.14 3.1E-06 49.2 4.5 33 91-124 6-38 (450)
402 PF01262 AlaDh_PNT_C: Alanine 92.6 0.18 4E-06 41.6 4.4 33 91-124 21-53 (168)
403 PF01488 Shikimate_DH: Shikima 92.5 0.22 4.7E-06 39.6 4.6 33 90-123 12-45 (135)
404 PRK06719 precorrin-2 dehydroge 92.4 0.21 4.5E-06 40.8 4.4 33 90-123 13-45 (157)
405 TIGR02354 thiF_fam2 thiamine b 92.4 0.2 4.4E-06 42.7 4.4 33 90-123 21-54 (200)
406 KOG2495 NADH-dehydrogenase (ub 92.2 1.9 4.1E-05 40.8 10.7 117 90-244 55-172 (491)
407 PRK08293 3-hydroxybutyryl-CoA 92.2 0.19 4E-06 45.4 4.3 32 92-124 5-36 (287)
408 PRK06718 precorrin-2 dehydroge 92.0 0.23 5E-06 42.4 4.4 33 90-123 10-42 (202)
409 TIGR00518 alaDH alanine dehydr 91.9 0.21 4.6E-06 46.8 4.4 34 90-124 167-200 (370)
410 PRK07819 3-hydroxybutyryl-CoA 91.9 0.2 4.3E-06 45.3 4.1 32 92-124 7-38 (286)
411 PF02254 TrkA_N: TrkA-N domain 91.9 0.29 6.2E-06 37.4 4.4 31 93-124 1-31 (116)
412 PRK05708 2-dehydropantoate 2-r 91.8 0.23 5.1E-06 45.2 4.5 32 92-124 4-35 (305)
413 PRK09260 3-hydroxybutyryl-CoA 91.7 0.2 4.4E-06 45.2 4.0 32 92-124 3-34 (288)
414 PRK15116 sulfur acceptor prote 91.7 0.26 5.6E-06 44.0 4.5 35 89-124 29-64 (268)
415 COG0686 Ald Alanine dehydrogen 91.6 0.18 3.9E-06 45.5 3.3 33 90-123 168-200 (371)
416 PRK07066 3-hydroxybutyryl-CoA 91.5 0.25 5.4E-06 45.4 4.2 32 92-124 9-40 (321)
417 PRK06249 2-dehydropantoate 2-r 91.5 0.31 6.8E-06 44.5 4.9 33 91-124 6-38 (313)
418 PRK12921 2-dehydropantoate 2-r 91.2 0.27 5.8E-06 44.6 4.1 30 92-122 2-31 (305)
419 PF00899 ThiF: ThiF family; I 91.2 0.29 6.3E-06 38.7 3.9 33 91-124 3-36 (135)
420 PRK06522 2-dehydropantoate 2-r 91.1 0.29 6.2E-06 44.3 4.3 31 92-123 2-32 (304)
421 PRK09424 pntA NAD(P) transhydr 91.0 0.26 5.7E-06 48.0 4.1 34 90-124 165-198 (509)
422 PRK07530 3-hydroxybutyryl-CoA 91.0 0.32 6.9E-06 44.0 4.4 32 92-124 6-37 (292)
423 PRK06035 3-hydroxyacyl-CoA deh 91.0 0.29 6.2E-06 44.3 4.1 32 92-124 5-36 (291)
424 cd05292 LDH_2 A subgroup of L- 90.9 0.33 7.2E-06 44.3 4.5 32 92-124 2-35 (308)
425 PRK07688 thiamine/molybdopteri 90.6 0.38 8.3E-06 44.5 4.7 34 90-124 24-58 (339)
426 cd00401 AdoHcyase S-adenosyl-L 90.6 0.35 7.5E-06 45.9 4.4 34 90-124 202-235 (413)
427 cd01080 NAD_bind_m-THF_DH_Cycl 90.4 0.5 1.1E-05 39.1 4.7 34 89-123 43-77 (168)
428 PRK05808 3-hydroxybutyryl-CoA 90.4 0.32 7E-06 43.7 3.9 32 92-124 5-36 (282)
429 cd05311 NAD_bind_2_malic_enz N 90.3 0.39 8.4E-06 41.8 4.2 34 90-124 25-61 (226)
430 PRK12549 shikimate 5-dehydroge 90.3 0.37 8.1E-06 43.4 4.3 32 91-123 128-160 (284)
431 PRK12475 thiamine/molybdopteri 90.3 0.4 8.7E-06 44.4 4.5 34 90-124 24-58 (338)
432 PTZ00082 L-lactate dehydrogena 90.3 0.52 1.1E-05 43.3 5.2 34 91-125 7-41 (321)
433 TIGR02356 adenyl_thiF thiazole 90.0 0.49 1.1E-05 40.4 4.5 34 90-124 21-55 (202)
434 PF13478 XdhC_C: XdhC Rossmann 89.8 0.4 8.7E-06 38.2 3.6 32 93-125 1-32 (136)
435 cd01483 E1_enzyme_family Super 89.8 0.53 1.1E-05 37.5 4.3 31 93-124 2-33 (143)
436 cd01487 E1_ThiF_like E1_ThiF_l 89.7 0.5 1.1E-05 39.3 4.2 31 93-124 2-33 (174)
437 PRK00066 ldh L-lactate dehydro 89.6 0.66 1.4E-05 42.5 5.3 34 90-124 6-41 (315)
438 COG1748 LYS9 Saccharopine dehy 89.5 0.48 1E-05 44.5 4.3 31 92-123 3-34 (389)
439 PRK08229 2-dehydropantoate 2-r 89.3 0.48 1E-05 43.7 4.2 32 92-124 4-35 (341)
440 TIGR01763 MalateDH_bact malate 89.2 0.55 1.2E-05 42.8 4.5 32 92-124 3-35 (305)
441 PRK12548 shikimate 5-dehydroge 88.8 0.56 1.2E-05 42.4 4.2 32 91-123 127-159 (289)
442 PRK08644 thiamine biosynthesis 88.8 0.66 1.4E-05 39.9 4.4 34 90-124 28-62 (212)
443 PRK14620 NAD(P)H-dependent gly 88.5 0.61 1.3E-05 42.8 4.4 32 92-124 2-33 (326)
444 PRK04148 hypothetical protein; 88.5 0.42 9.1E-06 37.9 2.8 32 91-124 18-49 (134)
445 COG3634 AhpF Alkyl hydroperoxi 88.5 0.35 7.6E-06 44.3 2.6 36 90-126 354-389 (520)
446 KOG1346 Programmed cell death 88.4 1.4 3.1E-05 41.5 6.5 125 89-242 177-311 (659)
447 PRK02472 murD UDP-N-acetylmura 88.4 0.57 1.2E-05 45.0 4.2 32 92-124 7-38 (447)
448 PRK06130 3-hydroxybutyryl-CoA 88.3 0.66 1.4E-05 42.2 4.4 32 92-124 6-37 (311)
449 TIGR02355 moeB molybdopterin s 88.3 0.75 1.6E-05 40.4 4.5 34 90-124 24-58 (240)
450 COG1004 Ugd Predicted UDP-gluc 88.0 0.63 1.4E-05 43.5 3.9 32 92-124 2-33 (414)
451 cd01339 LDH-like_MDH L-lactate 88.0 0.64 1.4E-05 42.2 4.0 31 93-124 1-32 (300)
452 PLN02545 3-hydroxybutyryl-CoA 87.8 0.75 1.6E-05 41.6 4.4 32 92-124 6-37 (295)
453 PRK08328 hypothetical protein; 87.8 0.83 1.8E-05 39.8 4.5 34 90-124 27-61 (231)
454 cd05291 HicDH_like L-2-hydroxy 87.7 0.81 1.7E-05 41.7 4.5 32 92-124 2-35 (306)
455 TIGR00936 ahcY adenosylhomocys 87.7 0.78 1.7E-05 43.5 4.5 34 90-124 195-228 (406)
456 PRK07208 hypothetical protein; 87.7 2.9 6.2E-05 40.5 8.6 59 170-239 218-277 (479)
457 PRK05690 molybdopterin biosynt 87.4 0.9 1.9E-05 40.0 4.5 34 90-124 32-66 (245)
458 TIGR03026 NDP-sugDHase nucleot 87.4 0.65 1.4E-05 44.2 3.9 32 92-124 2-33 (411)
459 PRK11064 wecC UDP-N-acetyl-D-m 87.3 0.79 1.7E-05 43.7 4.4 32 92-124 5-36 (415)
460 PRK06223 malate dehydrogenase; 87.2 0.93 2E-05 41.2 4.7 32 92-124 4-36 (307)
461 TIGR00561 pntA NAD(P) transhyd 87.0 0.85 1.8E-05 44.5 4.4 34 90-124 164-197 (511)
462 TIGR03736 PRTRC_ThiF PRTRC sys 86.9 0.99 2.1E-05 39.7 4.4 35 90-124 11-55 (244)
463 PRK11730 fadB multifunctional 86.9 0.76 1.7E-05 47.0 4.3 32 92-124 315-346 (715)
464 PRK00094 gpsA NAD(P)H-dependen 86.9 0.93 2E-05 41.4 4.5 32 92-124 3-34 (325)
465 TIGR03467 HpnE squalene-associ 86.8 1.9 4.2E-05 40.5 6.8 51 174-239 201-251 (419)
466 PRK12550 shikimate 5-dehydroge 86.8 0.9 2E-05 40.7 4.2 33 91-124 123-156 (272)
467 cd01075 NAD_bind_Leu_Phe_Val_D 86.7 1 2.2E-05 38.4 4.3 32 91-123 29-60 (200)
468 PRK04308 murD UDP-N-acetylmura 86.6 0.99 2.2E-05 43.4 4.7 34 91-125 6-39 (445)
469 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.5 0.9 2E-05 44.4 4.4 32 92-124 7-38 (503)
470 cd01078 NAD_bind_H4MPT_DH NADP 86.5 1.2 2.5E-05 37.6 4.6 33 90-123 28-61 (194)
471 TIGR02437 FadB fatty oxidation 86.2 0.87 1.9E-05 46.6 4.3 32 92-124 315-346 (714)
472 COG1148 HdrA Heterodisulfide r 86.2 1.4 3E-05 42.3 5.2 75 172-256 416-490 (622)
473 PRK14618 NAD(P)H-dependent gly 86.2 1 2.2E-05 41.4 4.4 32 92-124 6-37 (328)
474 cd00757 ThiF_MoeB_HesA_family 86.1 1.2 2.5E-05 38.8 4.5 34 90-124 21-55 (228)
475 COG1063 Tdh Threonine dehydrog 86.1 0.95 2.1E-05 42.1 4.1 32 92-124 171-203 (350)
476 cd00755 YgdL_like Family of ac 86.0 1.2 2.6E-05 38.9 4.4 34 90-124 11-45 (231)
477 PRK08306 dipicolinate synthase 85.9 1.1 2.4E-05 40.6 4.4 34 90-124 152-185 (296)
478 PRK14027 quinate/shikimate deh 85.9 1.1 2.3E-05 40.4 4.3 32 91-123 128-160 (283)
479 PRK05476 S-adenosyl-L-homocyst 85.8 1.1 2.4E-05 42.7 4.4 34 90-124 212-245 (425)
480 PRK03369 murD UDP-N-acetylmura 85.7 1 2.2E-05 44.0 4.3 32 91-123 13-44 (488)
481 PF00056 Ldh_1_N: lactate/mala 85.5 1.5 3.3E-05 35.0 4.5 33 92-124 2-36 (141)
482 PLN02353 probable UDP-glucose 85.4 1.1 2.5E-05 43.3 4.4 33 92-124 3-36 (473)
483 PRK14619 NAD(P)H-dependent gly 85.4 1.4 3E-05 40.1 4.8 33 91-124 5-37 (308)
484 COG1179 Dinucleotide-utilizing 85.4 1 2.3E-05 39.2 3.7 35 90-125 30-65 (263)
485 TIGR00507 aroE shikimate 5-deh 85.3 1.2 2.7E-05 39.7 4.3 32 91-123 118-149 (270)
486 PF00670 AdoHcyase_NAD: S-aden 85.3 1.1 2.5E-05 36.6 3.7 33 91-124 24-56 (162)
487 PRK04690 murD UDP-N-acetylmura 85.3 1 2.2E-05 43.6 4.1 31 92-123 10-40 (468)
488 PRK08223 hypothetical protein; 85.2 1.2 2.7E-05 40.0 4.2 34 90-124 27-61 (287)
489 PLN02520 bifunctional 3-dehydr 85.2 1.1 2.4E-05 44.2 4.3 32 91-123 380-411 (529)
490 PRK08268 3-hydroxy-acyl-CoA de 85.1 1.2 2.5E-05 43.7 4.4 32 92-124 9-40 (507)
491 TIGR01809 Shik-DH-AROM shikima 85.1 1.4 3E-05 39.7 4.5 33 90-123 125-158 (282)
492 cd05191 NAD_bind_amino_acid_DH 85.0 1.8 3.9E-05 31.2 4.4 33 90-122 23-55 (86)
493 PRK05562 precorrin-2 dehydroge 85.0 1.4 2.9E-05 38.2 4.3 33 90-123 25-57 (223)
494 PRK10669 putative cation:proto 84.9 1.1 2.3E-05 44.5 4.1 34 90-124 417-450 (558)
495 PRK07417 arogenate dehydrogena 84.8 1.2 2.6E-05 40.0 4.0 32 92-124 2-33 (279)
496 PTZ00117 malate dehydrogenase; 84.8 1.5 3.3E-05 40.2 4.8 34 90-124 5-39 (319)
497 TIGR02853 spore_dpaA dipicolin 84.7 1.3 2.9E-05 40.0 4.3 34 90-124 151-184 (287)
498 TIGR02441 fa_ox_alpha_mit fatt 84.6 1.1 2.4E-05 46.0 4.1 33 91-124 336-368 (737)
499 PRK00258 aroE shikimate 5-dehy 84.6 1.4 3E-05 39.6 4.3 33 90-123 123-156 (278)
500 PRK07502 cyclohexadienyl dehyd 84.4 1.5 3.3E-05 39.8 4.7 33 91-124 7-41 (307)
No 1
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=100.00 E-value=5.6e-54 Score=353.42 Aligned_cols=306 Identities=64% Similarity=1.003 Sum_probs=271.8
Q ss_pred CccccccccCCCccCcccccccccccCCCCCCCccccccccCCCCcccCccccCCCCCCCCCCccCCCchhhhhHHHHHh
Q 020815 1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR 80 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~ 80 (321)
|++.++..+.+. +.+...++++++++.+.+...+.. .+...-..|+..|.|.|++++.++|+|++|
T Consensus 1 m~Ata~~ts~sa--~k~~~~~d~~~H~s~~~s~p~~~~------------l~~~~~s~d~s~F~FaPIrEStVSRaMTrR 66 (328)
T KOG2960|consen 1 MSATATATSTSA--SKPQRLFDSQLHGSALNSTPVTHC------------LSDIVKSEDWSDFKFAPIRESTVSRAMTRR 66 (328)
T ss_pred CCccceeccccc--cCcccchhhhhhhhhhccCccccc------------ccccccccccccccccchhHHHHHHHHHHH
Confidence 445555444443 344467778888866554322111 011223346668999999999999999999
Q ss_pred HhhhcccCCcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCccc
Q 020815 81 YMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE 159 (321)
Q Consensus 81 ~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~ 159 (321)
|+.++.+..+.||+|||+|.+||++||..++ +|.++|.|||..-.+||+.|.+|++++.++.+.+..-+|+++|++|+.
T Consensus 67 Yf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYed 146 (328)
T KOG2960|consen 67 YFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYED 146 (328)
T ss_pred HHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCccc
Confidence 9999998888999999999999999999985 679999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-C----EEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815 160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-G----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (321)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~----~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V 234 (321)
.++|....|...|...++.+.++.+|++++..+.+++++... + ++.||.++|.++.+++.++.|.+..+++++.|
T Consensus 147 egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~v 226 (328)
T KOG2960|consen 147 EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVV 226 (328)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEE
Confidence 999999999999999999999999999999999999998763 2 78899999999999999999999999999999
Q ss_pred EEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeec
Q 020815 235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISG 314 (321)
Q Consensus 235 I~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 314 (321)
|-+||+.||++...++++.+++..+.+++++++++|..|+.++..+++++||+|+.|||++|+||.+||||+||+||+||
T Consensus 227 vS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG 306 (328)
T KOG2960|consen 227 VSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHTREVVPGMIVAGMEVAELDGANRMGPTFGAMMLSG 306 (328)
T ss_pred EEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhhhhccCceEEeeeeeeeccCCcccCcchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccc
Q 020815 315 QKAARM 320 (321)
Q Consensus 315 ~~~~~~ 320 (321)
+|||++
T Consensus 307 ~kAaq~ 312 (328)
T KOG2960|consen 307 VKAAQQ 312 (328)
T ss_pred hhHHHH
Confidence 999874
No 2
>PLN02661 Putative thiazole synthesis
Probab=100.00 E-value=2.9e-52 Score=377.09 Aligned_cols=296 Identities=85% Similarity=1.267 Sum_probs=257.6
Q ss_pred ccccCCCCCCCccccccccCCCCcccCccccCCCCCCCCCCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHH
Q 020815 23 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAG 102 (321)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aG 102 (321)
++|++.++.+....+... ...+.......+.++||++.|.|.++++..+++.+.++|+.++....++||+|||||++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AG 104 (357)
T PLN02661 27 SSFAGVRLVTSVRAPLAD--ASAPARSSSSSSTAPYDLNNFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAG 104 (357)
T ss_pred ccccCccccccccCCccc--cccccccccCCCCCCCccccccceechhhHhhccchHhHhhhhhhcccCCEEEECCHHHH
Confidence 778887777654333311 122222333467899999999999999999999999999999988889999999999999
Q ss_pred HHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHc
Q 020815 103 LSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182 (321)
Q Consensus 103 l~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (321)
+.+|+.|++.+|++|+||||...+||+.|.++..+.....+....++++++|++|+..++|....+...+...|++++.+
T Consensus 105 l~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~e~~stLi~ka~~ 184 (357)
T PLN02661 105 LSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMSKLLA 184 (357)
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchHHHHHHHHHHHHh
Confidence 99999999755899999999999999999998888877777778889999999998877777777888888899998887
Q ss_pred CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCccccc
Q 020815 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262 (321)
Q Consensus 183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~ 262 (321)
+.|++++.++.+++++.+++++.|+.++|.....+..++.+.+...|+||.||+|||+.++.+..+++++..+++...+|
T Consensus 185 ~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~p 264 (357)
T PLN02661 185 RPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVP 264 (357)
T ss_pred cCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCCccCCC
Confidence 78999999999999999999999999988655455443333455689999999999999999999999999999988899
Q ss_pred CCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhccc
Q 020815 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAARM 320 (321)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 320 (321)
++..+|.+..|+.++.++++++||+|++||++++++|.|||||+||+|++||+||||+
T Consensus 265 g~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~ 322 (357)
T PLN02661 265 GMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHL 322 (357)
T ss_pred CccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986
No 3
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-48 Score=320.62 Aligned_cols=252 Identities=44% Similarity=0.775 Sum_probs=230.0
Q ss_pred CCccCCCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh
Q 020815 62 TFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV 141 (321)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~ 141 (321)
.+.|.++.+..++|.++++|+++.....+.||+||||||+||+|||+|+++ |+||+|+|++..+||+.|.+|++++++.
T Consensus 2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV 80 (262)
T COG1635 2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV 80 (262)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence 357889999999999999999998877789999999999999999999999 9999999999999999999999999999
Q ss_pred ccchHHHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCC
Q 020815 142 VRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 142 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~ 220 (321)
.+.+..+.|+++|++|...++++...++.++...|..++. +.|++|+..+.|++++..++ +|.||.++|..++...
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~-- 157 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG-- 157 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence 9999999999999999998887888889999999999988 67899999999999999887 8999999998766654
Q ss_pred CCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCC
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~ 300 (321)
.+.+..+++|++||.|||+.+.+.+...++...++ ..+++++..|.+..|+.++.++++++||+|++||++.+.+|.
T Consensus 158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~--~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~ 234 (262)
T COG1635 158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL 234 (262)
T ss_pred -cccCcceeeEEEEEeCCCCchHHHHHHHHhccccc--cccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC
Confidence 44577899999999999998877655555554433 479999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeeeecchhccc
Q 020815 301 PRMGPTFGAMMISGQKAARM 320 (321)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~ 320 (321)
|||||+||+|++||+|||++
T Consensus 235 pRMGPiFGgMllSGkkaAe~ 254 (262)
T COG1635 235 PRMGPIFGGMLLSGKKAAEE 254 (262)
T ss_pred cccCchhhhhhhchHHHHHH
Confidence 99999999999999999974
No 4
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=100.00 E-value=5.1e-43 Score=309.21 Aligned_cols=245 Identities=42% Similarity=0.737 Sum_probs=208.4
Q ss_pred hhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHH
Q 020815 71 SIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150 (321)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l 150 (321)
..++|.+.++|+.++....+|||+|||||++|+++|+.|++. |++|+||||+..+|++.|.++..+..........+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l 80 (254)
T TIGR00292 2 SKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL 80 (254)
T ss_pred chhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence 357889999999998888899999999999999999999999 9999999999999999998888777766667778899
Q ss_pred HHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC--EEEEEEEeecceecccCCCCCCCceE
Q 020815 151 DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNV 228 (321)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (321)
+++|+++......+...+...+.+.|++++. +.|+++++++.++++..+++ ++.||.++|....++.. +.+..+
T Consensus 81 ~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~---~~d~~~ 156 (254)
T TIGR00292 81 DEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL---HVDPLT 156 (254)
T ss_pred HHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC---CCCCEE
Confidence 9999998776554445567888899998887 57999999999999998877 79999997743322221 123578
Q ss_pred EEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCccee
Q 020815 229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFG 308 (321)
Q Consensus 229 i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~ 308 (321)
++|+.||+|||+.+.+.....+++......+.+++++++|.+..|+.++.++++++||+|++||++++++|.|||||+||
T Consensus 157 i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg 236 (254)
T TIGR00292 157 QRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFG 236 (254)
T ss_pred EEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHH
Confidence 99999999999998776555555543333556799999999999999999999999999999999999999999999999
Q ss_pred eeeeecchhccc
Q 020815 309 AMMISGQKAARM 320 (321)
Q Consensus 309 ~~~~~~~~~~~~ 320 (321)
+|++||+||||+
T Consensus 237 ~m~~sg~~~a~~ 248 (254)
T TIGR00292 237 GMLLSGKHVAEQ 248 (254)
T ss_pred HHHHhhHHHHHH
Confidence 999999999986
No 5
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=100.00 E-value=1.1e-41 Score=301.54 Aligned_cols=247 Identities=37% Similarity=0.667 Sum_probs=205.9
Q ss_pred CCchhhhhHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH
Q 020815 67 PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146 (321)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~ 146 (321)
++.+..+++.+.++|+.++....++||+|||||++|++||++|++. |++|+|||+...+||+.|.++..+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~ 80 (257)
T PRK04176 2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA 80 (257)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence 3567788999999999998888899999999999999999999999 999999999999998888777766666666677
Q ss_pred HHHHHHcCCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCC
Q 020815 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 147 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
.++++++|++|.......+..+...+...|.+++. +.|++++++++|+++..+++ ++.|+.++|..+..+. .+.+
T Consensus 81 ~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g---~~~~ 156 (257)
T PRK04176 81 DEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG---LHVD 156 (257)
T ss_pred HHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC---CCCC
Confidence 88999999998764332334466788888888887 57999999999999988766 8999988763222111 1123
Q ss_pred ceEEEcCeEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCc
Q 020815 226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 305 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~ 305 (321)
..+++||.||+|||+.+.......++.. .....+++++++|.+..|+.++.++++++||+|++||++++++|.|||||
T Consensus 157 ~~~i~Ak~VI~ATG~~a~v~~~l~~~~~--~~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~ 234 (257)
T PRK04176 157 PLTIEAKAVVDATGHDAEVVSVLARKGP--ELGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGP 234 (257)
T ss_pred cEEEEcCEEEEEeCCCcHHHHHHHHHcC--CcccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCc
Confidence 4789999999999988876654444443 22346899999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecchhccc
Q 020815 306 TFGAMMISGQKAARM 320 (321)
Q Consensus 306 ~~~~~~~~~~~~~~~ 320 (321)
+||+|++||+|||++
T Consensus 235 ~fg~m~~sg~~~a~~ 249 (257)
T PRK04176 235 IFGGMLLSGKKVAEL 249 (257)
T ss_pred hhHhHHHhHHHHHHH
Confidence 999999999999986
No 6
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=100.00 E-value=3e-41 Score=281.85 Aligned_cols=229 Identities=44% Similarity=0.739 Sum_probs=184.9
Q ss_pred hHHHHHhHhhhcccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHc
Q 020815 74 SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL 153 (321)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~ 153 (321)
+|.+.++|++++....++||+||||||+|++||++|++. |+||+|+|++..+||..|.+|.+++++..+.+...+|+++
T Consensus 1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el 79 (230)
T PF01946_consen 1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL 79 (230)
T ss_dssp HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence 367888999888887899999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815 154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (321)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~ 232 (321)
|++|...+++++..++.++...|..++. +.|++++..+.|+++...+ ++|.|+.++|..+.+..- ..+..+++||
T Consensus 80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~gl---HvDPl~i~ak 155 (230)
T PF01946_consen 80 GIPYEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGL---HVDPLTIRAK 155 (230)
T ss_dssp T---EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred CceeEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhc---CCCcceEEEe
Confidence 9999998888888899999999999998 5999999999999999887 899999999987766521 2356899999
Q ss_pred eEEEcCCCCCCCcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcce
Q 020815 233 VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307 (321)
Q Consensus 233 ~VI~AtG~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~ 307 (321)
+||.|||+.+++.+...++.........+++++.+|.+..|+.++.++++++||+|++||++++.+|.|||||+|
T Consensus 156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF 230 (230)
T PF01946_consen 156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF 230 (230)
T ss_dssp EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence 999999999999998899888777677899999999999999999999999999999999999999999999998
No 7
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.75 E-value=9.8e-18 Score=157.50 Aligned_cols=166 Identities=21% Similarity=0.359 Sum_probs=104.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--------CccccCc----------------ccchhhh---cc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--------GGAWLGG----------------QLFSAMV---VR 143 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--------g~~~~~g----------------~~~~~~~---~~ 143 (321)
|||+|||||+||+.||+.|++. |.+|+|+||+..+| |.|-... ......+ ..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 7999999999999999999999 99999999998875 2221100 0111111 11
Q ss_pred chHHHHHHHcCCCcccCC-C--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815 144 KPAHIFLDELGIDYDEQD-N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 144 ~~~~~~l~~~g~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~ 220 (321)
.+.+.|++++|+++.... . |+....+..+.+.|++++. +.|++++++++|.+|..+++.+..|.+.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~---------- 148 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTK---------- 148 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEET----------
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeecc----------
Confidence 246789999999886542 3 2333457788899888887 6899999999999999999988888873
Q ss_pred CCCCCceEEEcCeEEEcCCCCCCC--c--chhhhhhhhcCC--cccccCCceeecccc
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGPF--G--ATGVKRLKSIGM--IEEVPGMKALDMNSA 272 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~~--~--~~~~~~~~~~g~--~~~~~~~~~~~~~~~ 272 (321)
+..++.||.||+|+||.+.+ + .++++.+..+|| +++.|.++++.....
T Consensus 149 ----~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~ 202 (409)
T PF03486_consen 149 ----NGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEP 202 (409)
T ss_dssp ----TTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HH
T ss_pred ----CcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecch
Confidence 23789999999999987632 2 267888999988 888999999877643
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.74 E-value=5.8e-17 Score=147.17 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=125.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc---------ccchhhh-----------------cc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---------QLFSAMV-----------------VR 143 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g---------~~~~~~~-----------------~~ 143 (321)
.+||+|||||+||+.||..+++. |.+|+|||+++.+|-.....| ..++.++ ..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 58999999999999999999999 999999999988763221111 1111111 11
Q ss_pred chHHHHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815 144 KPAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 144 ~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~ 220 (321)
.+.+.|.+.+|+.+..... |+..+.+..+++.|+.++. +.||+++.+++|.++..++. ...+.+.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~-~f~l~t~~--------- 150 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDS-GFRLDTSS--------- 150 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCc-eEEEEcCC---------
Confidence 2467889999999876533 3334678899999999997 78999999999999988773 33444432
Q ss_pred CCCCCceEEEcCeEEEcCCCCCCC--cc--hhhhhhhhcCC--cccccCCceeeccccc
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM--IEEVPGMKALDMNSAE 273 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~~--~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~ 273 (321)
+.+++||.+|+|+||.+-+ +. .+++.+...|+ .+..|.++++......
T Consensus 151 -----g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~ 204 (408)
T COG2081 151 -----GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESF 204 (408)
T ss_pred -----CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHH
Confidence 2489999999999987643 33 46788888887 8889999999877544
No 9
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.67 E-value=6.9e-16 Score=152.87 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=104.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc--------------------------hh--
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF--------------------------SA-- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~--------------------------~~-- 139 (321)
.++||||||+|.||++||+.+++. |++|+||||....++++.. .|.+. +.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 368999999999999999999999 9999999998766554321 11110 00
Q ss_pred --hhcc--chHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEc
Q 020815 140 --MVVR--KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 190 (321)
Q Consensus 140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~ 190 (321)
.+.+ ...++||+++|++|+...+ +. ... .+..+...|.+++. +.|+++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence 0000 1356899999999965321 10 000 23567788888887 57999999
Q ss_pred CceEEEEEE-ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 191 AVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 191 ~~~v~~l~~-~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.+++|+. ++++|.||...+ . .+++...+.||.||+||||++..
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~------~---~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMS------M---EDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEE------C---CCCeEEEEECCcEEEeCCCCccc
Confidence 999999998 678999998632 1 12345689999999999998743
No 10
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.67 E-value=9.7e-16 Score=151.95 Aligned_cols=145 Identities=23% Similarity=0.287 Sum_probs=104.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc--------------------------hh--
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF--------------------------SA-- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~--------------------------~~-- 139 (321)
.++||||||+|.||++||+.+++. |++|+||||....++++.. .|.+. ++
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 368999999999999999999999 9999999998766554321 11110 00
Q ss_pred --hhc--cchHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEc
Q 020815 140 --MVV--RKPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 190 (321)
Q Consensus 140 --~~~--~~~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~ 190 (321)
.+. ....++||+++|++|++..+ +. ... .+..+...|++++. +.|++++.
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 206 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFV 206 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence 000 11356899999999975321 10 000 24567788888876 57999999
Q ss_pred CceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 191 AVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 191 ~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.+++|+.+ +++|.|+.+.+. .+++...+.||.||+||||++..
T Consensus 207 ~~~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 207 EYFALDLIMDSDGACQGVIALNM---------EDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred eeEEEEEEEcCCCEEEEEEEEEc---------CCCeEEEEEcCeEEECCCCCccc
Confidence 9999999987 689999987431 12345789999999999998743
No 11
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.66 E-value=2.2e-15 Score=148.17 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=103.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccch-----------------hh------hcc--
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLFS-----------------AM------VVR-- 143 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~~-----------------~~------~~~-- 143 (321)
++||||||+|.||++||+.+++. |.+|+||||....++++. .+|.+.. .. +.+
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 68999999999999999999999 999999999876554432 2221110 00 000
Q ss_pred ---------chHHHHHHHcCCCcccCCCe------------EEEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815 144 ---------KPAHIFLDELGIDYDEQDNY------------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (321)
Q Consensus 144 ---------~~~~~~l~~~g~~~~~~~~~------------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l 197 (321)
...++||+++|++|+...+. .... .+..+...|.+++. +.|+++++++.+++|
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~L 162 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEEE
Confidence 13468999999999753211 0111 24567778888776 469999999999999
Q ss_pred EEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.++++|.||.+.+. .+++...++||.||+||||++.
T Consensus 163 i~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 163 VTDNKKVVGIVAMQM---------KTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred EEECCEEEEEEEEEC---------CCCeEEEEEeCeEEECCCcccc
Confidence 999999999987531 1123468999999999999873
No 12
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.66 E-value=2.1e-15 Score=149.16 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=102.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------h---h----h------hcc---
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------S---A----M------VVR--- 143 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------~---~----~------~~~--- 143 (321)
.++||||||+|.||++||+.|++. |.+|+||||....++++. ..|.+. + . . +.+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 368999999999999999999999 999999999865544431 111110 0 0 0 000
Q ss_pred --------chHHHHHHHcCCCcccCCC--eEE------------------E-----ecHHHHHHHHHHHHHcCCCcEEEc
Q 020815 144 --------KPAHIFLDELGIDYDEQDN--YVV------------------I-----KHAALFTSTIMSKLLARPNVKLFN 190 (321)
Q Consensus 144 --------~~~~~~l~~~g~~~~~~~~--~~~------------------~-----~~~~~~~~~l~~~~~~~~gv~i~~ 190 (321)
...++||+++|++|+...+ +.. . ..+..+...|++.+. +.|+++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence 1346889999999865321 100 0 023567788888886 57999999
Q ss_pred CceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 191 AVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 191 ~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.+++|+.++ ++|.||.+.+. .++....+.|+.||+||||++..
T Consensus 169 ~~~v~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 169 EYFALDLIMDDGGVCRGVVAWNL---------DDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred eEEEEEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEECCCCCccc
Confidence 99999999875 78999987321 12345689999999999998743
No 13
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.66 E-value=2.6e-15 Score=148.04 Aligned_cols=143 Identities=20% Similarity=0.322 Sum_probs=103.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc--------------------------hh---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------------------SA--- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~--------------------------~~--- 139 (321)
++||||||+|.||++||+.+++. |.+|+||||....+|++. .+|.+. +.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 68999999999999999999998 999999999866554332 222110 00
Q ss_pred -hhc--cchHHHHHHHcCCCcccCCC--eE-----------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCc
Q 020815 140 -MVV--RKPAHIFLDELGIDYDEQDN--YV-----------------VI-----KHAALFTSTIMSKLLARPNVKLFNAV 192 (321)
Q Consensus 140 -~~~--~~~~~~~l~~~g~~~~~~~~--~~-----------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~ 192 (321)
.+. ....++||+++|++|+...+ +. .. ..+..+...|++++. +.++++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeCc
Confidence 000 12356899999999975311 10 00 024567788888776 6799999999
Q ss_pred eEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 193 ~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+++|+.+ +++|.||...+. .+++...+.|+.||+||||++.
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICI---------ETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCCccc
Confidence 99999985 789999987421 1234567999999999999873
No 14
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.65 E-value=3.6e-15 Score=142.16 Aligned_cols=141 Identities=19% Similarity=0.294 Sum_probs=101.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc------------hh----------------h
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF------------SA----------------M 140 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~------------~~----------------~ 140 (321)
++||||||+|.||++||+.++ . |.+|+||||....++++.. ++.+. .. +
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 689999999999999999984 6 8999999999877665432 11110 00 0
Q ss_pred hc-cchHHHHHHHcCCCcccCCCeE-----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE
Q 020815 141 VV-RKPAHIFLDELGIDYDEQDNYV-----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR 203 (321)
Q Consensus 141 ~~-~~~~~~~l~~~g~~~~~~~~~~-----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~ 203 (321)
.. ....++||.++|++|+...... .. ..+..+...|++++.++.|+++++++.+++|+.++++
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 00 1235689999999986542110 00 1235677888888875679999999999999988889
Q ss_pred EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 204 VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 204 v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
|.||.... +++..++.||.||+|||+++.
T Consensus 162 v~Gv~~~~-----------~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 162 CIGAICLK-----------DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEE-----------CCcEEEEEcCeEEEccCcccc
Confidence 99977531 112357999999999999764
No 15
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.65 E-value=1.7e-15 Score=137.17 Aligned_cols=205 Identities=24% Similarity=0.332 Sum_probs=142.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC--------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------- 155 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~-------- 155 (321)
.++||+||||||+||+||++|.+. -.++|+|+||...+||-...+..+ +....+. .+..+++.+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi-ep~aldE-L~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI-EPGALDE-LLPDWKEDGAPLNTPVTS 152 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceee-ccchhhh-hCcchhhcCCcccccccc
Confidence 369999999999999999998651 168999999999999877654432 1111110 0000111111
Q ss_pred ------------------CcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceec
Q 020815 156 ------------------DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSM 216 (321)
Q Consensus 156 ------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~ 216 (321)
+++..++|.+ .-..++++|-+++. +.|++|+.+..+.+++++ ++.|.|+.+++..+..
T Consensus 153 d~~~fLt~~~~i~vPv~~pm~NhGNYvv--~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVPSPMDNHGNYVV--SLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred cceeeeccCceeecCCCcccccCCcEEE--EHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 1222233332 34678889888887 799999999999999985 6899999998866655
Q ss_pred ccCCCCCCC-ceEEEcCeEEEcCCCCCCCcchhhhhhhhc---CCcccccCCceeecccccchhhccccccccccccccc
Q 020815 217 NHDTQSCMD-PNVMEAKVVVSSCGHDGPFGATGVKRLKSI---GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGM 292 (321)
Q Consensus 217 ~~~~~~~g~-~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~ 292 (321)
+...+.+.+ +.+++|+..|.|.|.+|++...-+.++.-. ...-+-.+.+++|..+.+ .+.||.+..
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~--------~~~pG~v~H-- 299 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPE--------NHNPGEVAH-- 299 (621)
T ss_pred CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChh--------hcCCcceee--
Confidence 544443332 457999999999999999887766665422 223344577888877766 567886555
Q ss_pred chhhcCCCCCCCcceeeeee
Q 020815 293 EVAEIDGAPRMGPTFGAMMI 312 (321)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~ 312 (321)
.-|||..-.+||+-++
T Consensus 300 ----T~GwPl~~~tYGGsFl 315 (621)
T KOG2415|consen 300 ----TLGWPLDNDTYGGSFL 315 (621)
T ss_pred ----eccCcccCCccCceeE
Confidence 6699999999987554
No 16
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.64 E-value=5e-15 Score=146.01 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=104.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccC-cccc------------------------hhh--
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLG-GQLF------------------------SAM-- 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~-g~~~------------------------~~~-- 140 (321)
.++||||||+|.||++||+.|++. +|.+|+||||....++++... |.+. +..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 368999999999999999999985 158999999987666544322 2110 000
Q ss_pred --hc--cchHHHHHHHcCCCcccCCC--eEE----------E----e-cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815 141 --VV--RKPAHIFLDELGIDYDEQDN--YVV----------I----K-HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (321)
Q Consensus 141 --~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~----~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 199 (321)
+. ....++||+++|++|+...+ +.. . . .+..+...|++++.+..+++++.++.+++|+.
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 00 01356899999999975322 100 0 1 23567788888877556899999999999999
Q ss_pred ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++++|.|+.... . .+++...++|+.||+|||+++..
T Consensus 163 ~~g~v~Gv~~~~------~---~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 163 DDGHVRGLVAMN------M---MEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred eCCEEEEEEEEE------c---CCCcEEEEECCEEEECCCCCcCC
Confidence 899999987632 0 11234689999999999998854
No 17
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.64 E-value=2.3e-15 Score=139.83 Aligned_cols=175 Identities=25% Similarity=0.439 Sum_probs=127.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchh----------------------------hhc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSA----------------------------MVV 142 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~----------------------------~~~ 142 (321)
||+|||+|.|||++|+.|++. .+|+||-|.... +.+.|.+|++... .+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999999885 899999998765 4455665543211 111
Q ss_pred c--chHHHHHHHcCCCcccCCC--eEEEe---------------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-
Q 020815 143 R--KPAHIFLDELGIDYDEQDN--YVVIK---------------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG- 202 (321)
Q Consensus 143 ~--~~~~~~l~~~g~~~~~~~~--~~~~~---------------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~- 202 (321)
. ...++||.++|++|+++.+ |.+.. -++.+++.|++++++.++|++++++.+.+|+.+++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 1 2457899999999998753 33311 23678899999998889999999999999999998
Q ss_pred EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcch----------hhh-------hhhhcCC--------
Q 020815 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT----------GVK-------RLKSIGM-------- 257 (321)
Q Consensus 203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~----------~~~-------~~~~~g~-------- 257 (321)
.+.|+.+.+. .++..+++|+.||+||||.|.+... ++. .+.+++|
T Consensus 167 ~~~Gv~~~~~----------~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l 236 (518)
T COG0029 167 GVAGVLVLNR----------NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL 236 (518)
T ss_pred eEeEEEEecC----------CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeecccee
Confidence 5558888531 0134789999999999998854321 111 1233443
Q ss_pred ----------cccccCCceeecccccchhhc
Q 020815 258 ----------IEEVPGMKALDMNSAEDAIVR 278 (321)
Q Consensus 258 ----------~~~~~~~~~~~~~~~~~~~~~ 278 (321)
.+.+.|++++..+..+.+|+.
T Consensus 237 ~~~~~~~~LiSEAVRGEGA~L~~~~GeRFm~ 267 (518)
T COG0029 237 YIPQRRAFLISEAVRGEGAILVNEDGERFMP 267 (518)
T ss_pred cCCCCccceeehhhhcCccEEECCCCCcccc
Confidence 456678888888888888884
No 18
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=8.5e-15 Score=142.32 Aligned_cols=142 Identities=23% Similarity=0.379 Sum_probs=101.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc--------------------chhhh-------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------------FSAMV------- 141 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~--------------------~~~~~------- 141 (321)
++||||||+|.+|++||+++++. |.+|+||||....||++. ..+.+ +...+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999 999999999988776532 11111 00000
Q ss_pred ----------ccchHHHHHHHcCCCcccCC--------CeEEE----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815 142 ----------VRKPAHIFLDELGIDYDEQD--------NYVVI----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (321)
Q Consensus 142 ----------~~~~~~~~l~~~g~~~~~~~--------~~~~~----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 199 (321)
.....++||+++|++|.... ..... .....+...|.+.+. +.|+++++++++++|+.
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKITE 218 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEEe
Confidence 01134678888998775321 00000 123456777877776 67999999999999988
Q ss_pred ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++++|.+|.+.. .+++..++.||.||+|+|+++.
T Consensus 219 ~~g~V~Gv~~~~----------~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KDGKVTGVKVKI----------NGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cCCEEEEEEEEe----------CCCeEEEEecCeEEEeCCCccc
Confidence 888999988742 1113367999999999998764
No 19
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=8.7e-15 Score=145.54 Aligned_cols=145 Identities=20% Similarity=0.218 Sum_probs=99.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-Ccc-ccCcccc---------------------------hh
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGA-WLGGQLF---------------------------SA 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~-~~~g~~~---------------------------~~ 139 (321)
.++||||||+|.||++||+.|++. |.+|+||||...++ +++ +.+|.+. +.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~ 112 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE 112 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence 468999999999999999999999 99999999876554 222 2222110 00
Q ss_pred ----hhc--cchHHHHHHHcCCCcccCCC--eEE----------Ee-----cHHHHH----HHHHHHHHcCCCcEEEcCc
Q 020815 140 ----MVV--RKPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFT----STIMSKLLARPNVKLFNAV 192 (321)
Q Consensus 140 ----~~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~~-----~~~~~~----~~l~~~~~~~~gv~i~~~~ 192 (321)
.+. ....++||+++|++|+.... +.. .. .+..+. +.|.+.+. +.|+++++++
T Consensus 113 ~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~-~~gV~i~~~t 191 (640)
T PRK07573 113 ANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIA-AGTVKMYTRT 191 (640)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHH-hcCCEEEece
Confidence 000 11456899999999975321 100 00 122333 44444554 6799999999
Q ss_pred eEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 193 AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 193 ~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
.+++|+.++++|.||.+.+. .++....+.||.||+||||++..
T Consensus 192 ~v~~Li~d~g~V~GV~~~~~---------~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 192 EMLDLVVVDGRARGIVARNL---------VTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEEEeCCEEEEEEEEEC---------CCCcEEEEECCEEEECCCCcccC
Confidence 99999998899999987531 12234679999999999998743
No 20
>PLN02815 L-aspartate oxidase
Probab=99.63 E-value=4.4e-15 Score=146.09 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=103.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc------------------------hh----
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------------------SA---- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~~---- 139 (321)
.++||||||+|.|||+||+.+++. | +|+||||....+|++. .+|.+. +.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 368999999999999999999998 8 9999999887766442 222110 00
Q ss_pred hhc--cchHHHHHHHcCCCcccCCC--eE----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815 140 MVV--RKPAHIFLDELGIDYDEQDN--YV----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (321)
Q Consensus 140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 200 (321)
.+. ....++||+++|++|+.... +. .. ..+..+...|++++.+..|+++++++.+++|+.+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 000 01356899999999975321 11 01 1245677888888876679999999999999986
Q ss_pred C-C---EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 201 G-G---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 201 ~-~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+ + +|.|+.+.+. .++....+.||.||+||||++..
T Consensus 186 ~~g~~~~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 186 QDGGSIVCHGADVLDT---------RTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred cCCCccEEEEEEEEEc---------CCCeEEEEEeceEEEcCCcceee
Confidence 3 3 3889887421 12344678999999999998743
No 21
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.63 E-value=9.8e-15 Score=143.69 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=105.4
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cCcccc------------------------h----h
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LGGQLF------------------------S----A 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~----~ 139 (321)
++||||||+|+||+.||+.+++. +|++|+||||....++++. .+|.+. + .
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 68999999999999999999975 2589999999877665542 222110 0 0
Q ss_pred hhc--cchHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815 140 MVV--RKPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (321)
Q Consensus 140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 200 (321)
.+. ....++||+++|++|+...+ +.. . ..+..+.+.|++++.+..+++++.++.+++|+.+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 001 12456899999999975421 100 0 1346788888888875578999999999999999
Q ss_pred CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+++|.|+...+. .+++...+.|+.||+|||+++..
T Consensus 163 ~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEM---------AEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEc---------CCCcEEEEecCEEEEcCCCCccc
Confidence 999999986421 12344689999999999998743
No 22
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=8.2e-15 Score=144.51 Aligned_cols=144 Identities=23% Similarity=0.332 Sum_probs=101.5
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCcccc------------hh----------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF------------SA---------------- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~-~~~g~~~------------~~---------------- 139 (321)
++||||||+|.||++||+.|++. +|.+|+||||....++++ +.+|.+. ..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 68999999999999999999975 148999999987655433 2222110 00
Q ss_pred ---hhc--cchHHHHHHHcCCCcccCCCe--E----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815 140 ---MVV--RKPAHIFLDELGIDYDEQDNY--V----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (321)
Q Consensus 140 ---~~~--~~~~~~~l~~~g~~~~~~~~~--~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l 197 (321)
.+. ....++||+++|++|+...+. . .. ..+..+...|.+.+. +.|+++++++.+++|
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~L 161 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEEE
Confidence 000 013457889999999764211 1 00 123567788888886 579999999999999
Q ss_pred EEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.++++|.|+..... .+++...+.|+.||+|||+++.
T Consensus 162 ~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 162 ILEDNQAKGVVMYHI---------ADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEECCEEEEEEEEEc---------CCCeEEEEECCEEEECCCCCcC
Confidence 988999999876320 1123457999999999999874
No 23
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=5.7e-15 Score=145.72 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=102.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC---CeEEEEeccCCCCCcccc-Ccccc-----------hh---------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAWL-GGQLF-----------SA--------------- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G---~~V~liEk~~~~gg~~~~-~g~~~-----------~~--------------- 139 (321)
++||||||+|.||++||+.|++. | .+|+||||....++++.. +|.+. ..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 68999999999999999999998 7 899999998766654322 11110 00
Q ss_pred ----hhc--cchHHHHHHHcCCCcccCCC--eE----------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815 140 ----MVV--RKPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 196 (321)
Q Consensus 140 ----~~~--~~~~~~~l~~~g~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~ 196 (321)
.+. ....++||+++|++|+...+ +. ... .+..+.+.|++++.+..++++++++.+++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~ 163 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTS 163 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEE
Confidence 000 01346899999999975422 11 111 13457788888887557999999999999
Q ss_pred EEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 197 l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
|+.++++|.|+.+.+. .+++...+.|+.||+|||+++.
T Consensus 164 Li~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 164 LIVENGVFKGVTAIDL---------KRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEECCEEEEEEEEEc---------CCCeEEEEECCcEEEcCchhcc
Confidence 9998999999876321 1123357899999999999863
No 24
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.62 E-value=8e-15 Score=139.33 Aligned_cols=141 Identities=26% Similarity=0.363 Sum_probs=95.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-ccc----------------chh---------------
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQL----------------FSA--------------- 139 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~----------------~~~--------------- 139 (321)
||||||+|.+|++||+.|++. |.+|+||||....||++... +.+ ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP 79 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence 899999999999999999999 99999999998877654221 110 000
Q ss_pred ----hhc--cchHHHHHHHcCCCcccC--------------CCeEEEe-----------cHHHHHHHHHHHHHcCCCcEE
Q 020815 140 ----MVV--RKPAHIFLDELGIDYDEQ--------------DNYVVIK-----------HAALFTSTIMSKLLARPNVKL 188 (321)
Q Consensus 140 ----~~~--~~~~~~~l~~~g~~~~~~--------------~~~~~~~-----------~~~~~~~~l~~~~~~~~gv~i 188 (321)
.+. ....++||+++|++|... ..+.... ....+...|.+.++ +.+++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i 158 (417)
T PF00890_consen 80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence 000 013568899999988771 0101111 34567788888876 678999
Q ss_pred EcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 189 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 189 ~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++++++++|+.++++|+||..... .++...+|+|+.||+|||+++.
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~---------~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENP---------ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEET---------TTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEEC---------CCCeEEEEeeeEEEeccCcccc
Confidence 999999999999999999998631 2234568999999999998875
No 25
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.61 E-value=6.9e-15 Score=144.01 Aligned_cols=141 Identities=24% Similarity=0.435 Sum_probs=101.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc-------------h-----------h----
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------S-----------A---- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~-------------~-----------~---- 139 (321)
.++||||||+|.||++||+.++ . |.+|+||||....+|++ +.+|.+. . .
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4799999999999999999985 5 89999999998766654 2222211 0 0
Q ss_pred hhc--cchHHHHHHHcCCCcccCCC-eE----------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815 140 MVV--RKPAHIFLDELGIDYDEQDN-YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (321)
Q Consensus 140 ~~~--~~~~~~~l~~~g~~~~~~~~-~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 201 (321)
.+. ....++||.++|++|+..+. +. ... .+..+...|.+.+.+..|+++++++.+++|+.++
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~ 165 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence 000 01346899999999975421 10 011 2456778888888656799999999999999873
Q ss_pred --CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 202 --GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 202 --~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++|.||.+.. ++....+.|+.||+||||++
T Consensus 166 ~~g~v~Gv~~~~-----------~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 166 ETGRCQGISLLY-----------QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CCCEEEEEEEEE-----------CCeEEEEEcCEEEEcCCCCc
Confidence 7899997642 12335689999999999975
No 26
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.61 E-value=1.8e-14 Score=138.86 Aligned_cols=142 Identities=17% Similarity=0.252 Sum_probs=100.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCccc--------------------chhhh------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV------ 141 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~--~gg~~~~~g~~--------------------~~~~~------ 141 (321)
++||||||+|++|++||++|++. |.+|+||||... .||++...+.+ +..+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 68999999999999999999999 999999999864 45543221111 00000
Q ss_pred -----------ccchHHHHHHHcCCCcccCCC---------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815 142 -----------VRKPAHIFLDELGIDYDEQDN---------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (321)
Q Consensus 142 -----------~~~~~~~~l~~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 201 (321)
.....++|+.++|++|..... .........+...|.+.+. +.|++++++++|++|+.++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence 001345788888988754211 1111124567778887776 6799999999999999888
Q ss_pred CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++|.+|.+.. .+++...++||.||+|+|+++.
T Consensus 162 g~v~gv~~~~----------~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 GRFVGARAGS----------AAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred CeEEEEEEEc----------cCCceEEEECCEEEECCCCCCC
Confidence 9999988731 1123467899999999998653
No 27
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=1.7e-14 Score=143.27 Aligned_cols=145 Identities=23% Similarity=0.362 Sum_probs=101.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc------------c---------------hh-
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL------------F---------------SA- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~------------~---------------~~- 139 (321)
.++||||||+|.||++||+.|++. |.+|+||||....++++. .+|.+ + +.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 368999999999999999999999 999999999876544321 11110 0 00
Q ss_pred ---hhc--cchHHHHHHHcCCCcccCCC--e----------EEEe-----cHHHHHHHHHHHHHcCC-------C-----
Q 020815 140 ---MVV--RKPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARP-------N----- 185 (321)
Q Consensus 140 ---~~~--~~~~~~~l~~~g~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~-------g----- 185 (321)
.+. ....++||+++|++|+...+ + .... .+..+...|.+++.+.+ |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 000 11345789999999975321 1 1111 24567777877776432 5
Q ss_pred cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 186 v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++++++.+++|+.++++|.|+..... .+++...+.|+.||+|||+++.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWR---------ESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEEC---------CCCeEEEEEcCeEEECCCcccC
Confidence 999999999999988899999876321 1223467999999999999763
No 28
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.60 E-value=1.4e-14 Score=144.27 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=101.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCccc--------------ch----------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------FS---------------- 138 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~--------------~~---------------- 138 (321)
++||||||+|.+|+.||+.+++. |++|+||||....++.+. ..|.+ ..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~ 83 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ 83 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence 68999999999999999999999 999999999876554321 11100 00
Q ss_pred ---hhhc--cchHHHHHHHcCCCcccCCCe--------------------------EE-------E-----ecHHHHHHH
Q 020815 139 ---AMVV--RKPAHIFLDELGIDYDEQDNY--------------------------VV-------I-----KHAALFTST 175 (321)
Q Consensus 139 ---~~~~--~~~~~~~l~~~g~~~~~~~~~--------------------------~~-------~-----~~~~~~~~~ 175 (321)
..+. ....++||+++|++|+..... .+ . .....+...
T Consensus 84 ~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~~ 163 (657)
T PRK08626 84 EVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLYA 163 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHHH
Confidence 0000 123568999999988653110 00 0 012345566
Q ss_pred HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
|.+.+. +.|+++++++.+++|+.++++|.|+.+.+. .+++...+.||.||+||||++..
T Consensus 164 L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~---------~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 164 VDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRCL---------ITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCeEEECCCcccCC
Confidence 777675 679999999999999999999999987431 12345678999999999998743
No 29
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.60 E-value=2e-14 Score=141.96 Aligned_cols=145 Identities=21% Similarity=0.355 Sum_probs=101.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc-----------chh-----------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL-----------FSA----------------- 139 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~-----------~~~----------------- 139 (321)
.++||||||+|.||++||+.+++. |.+|+||||....++++.. .|.+ +..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 368999999999999999999999 9999999998654443321 1110 000
Q ss_pred --hhcc--chHHHHHHHcCCCcccCCC--eEE-----------------E-----ecHHHHHHHHHHHHHcCCCcEEEcC
Q 020815 140 --MVVR--KPAHIFLDELGIDYDEQDN--YVV-----------------I-----KHAALFTSTIMSKLLARPNVKLFNA 191 (321)
Q Consensus 140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~~-----------------~-----~~~~~~~~~l~~~~~~~~gv~i~~~ 191 (321)
.+.. ...++||.++|++|+...+ +.. . ..+..+...|++.+. +.|++++.+
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEeC
Confidence 0000 1346788999999975321 110 0 013457788888776 689999999
Q ss_pred ceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 192 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 192 ~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+.+++|+.+ +++|.||.+.+. .++....+.||.||+||||++..
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALEM---------ETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEEc---------CCCeEEEEECCeEEECCCCcccc
Confidence 999999986 588999987421 11234678999999999998744
No 30
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.60 E-value=2e-14 Score=142.30 Aligned_cols=144 Identities=24% Similarity=0.371 Sum_probs=100.7
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcc--c---------chhh---------------hc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQ--L---------FSAM---------------VV 142 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~--~---------~~~~---------------~~ 142 (321)
++||||||+|.||++||+.|++. +|.+|+||||....+++++.++. . +... +.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 68999999999999999999985 37999999998755444332221 0 0000 00
Q ss_pred ------cchHHHHHHHcCCCcccCCC--eEE------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEE
Q 020815 143 ------RKPAHIFLDELGIDYDEQDN--YVV------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 208 (321)
Q Consensus 143 ------~~~~~~~l~~~g~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~ 208 (321)
....++||+++|++|+.... +.. ...+..+...|.+.+.+..|+++++++.+++|+.++++|.||.
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 02356889999999865321 111 1234567777777776445699999999999998888999987
Q ss_pred EeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.... .+++...+.||.||+|||+++
T Consensus 171 ~~~~---------~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 171 GFSV---------RENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred EEEc---------cCCcEEEEECCEEEECCCchh
Confidence 5320 112335799999999999876
No 31
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.60 E-value=2.3e-14 Score=138.85 Aligned_cols=142 Identities=28% Similarity=0.458 Sum_probs=102.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc------------------------hh----h
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------------------SA----M 140 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~------------------------~~----~ 140 (321)
++||||||+|.||+.||+.|++. |. |+||||....+|++. .+|.+. +. .
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 57999999999999999999998 87 999999976665543 222110 00 0
Q ss_pred hc--cchHHHHHHHcCCCcccCCC--e----------EEEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815 141 VV--RKPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (321)
Q Consensus 141 ~~--~~~~~~~l~~~g~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 201 (321)
+. ....++||+++|++|+.... + .... .+..+...|.+++.+..|+++++++.+++|+.++
T Consensus 80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 00 11356899999999875321 1 0111 2457788888888755799999999999999888
Q ss_pred CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+++.|+.+... +....++|+.||+|||+++..
T Consensus 160 g~v~Gv~~~~~-----------~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 160 GRVVGVWVWNR-----------ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CEEEEEEEEEC-----------CcEEEEEcCEEEECCCcccCC
Confidence 88998877430 123578999999999998753
No 32
>PRK07121 hypothetical protein; Validated
Probab=99.59 E-value=2.7e-14 Score=138.58 Aligned_cols=141 Identities=26% Similarity=0.376 Sum_probs=100.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc----------------------hhh------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF----------------------SAM------ 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~----------------------~~~------ 140 (321)
.++||||||+|.+|++||++|++. |.+|+||||....||++...+..+ ..+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999 999999999987776653222110 000
Q ss_pred ----------h-ccchHHHHHHHcCCCcccCCC--------------e-------------------EEE----e--cHH
Q 020815 141 ----------V-VRKPAHIFLDELGIDYDEQDN--------------Y-------------------VVI----K--HAA 170 (321)
Q Consensus 141 ----------~-~~~~~~~~l~~~g~~~~~~~~--------------~-------------------~~~----~--~~~ 170 (321)
+ ...+.++||+++|++|..... + ... . ...
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 0 001346788899988753200 0 000 0 245
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~ 242 (321)
.+...|.+++. +.|+++++++++++|+.++ ++|.||+... +++...++| |.||+|||+++
T Consensus 178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----------YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----------CCcEEEEEeCCEEEECCCCcC
Confidence 67777877776 6799999999999999874 6899988742 113367899 99999999876
No 33
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.59 E-value=2.3e-14 Score=140.70 Aligned_cols=149 Identities=26% Similarity=0.322 Sum_probs=100.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--CCCCccc-cCccc------------------------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGAW-LGGQL------------------------------ 136 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--~~gg~~~-~~g~~------------------------------ 136 (321)
++||||||+|.+|++||+.+++. |++|+||||.+ ..||++. .++.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 68999999999999999999999 99999999998 5666542 11110
Q ss_pred -----------chhhhc--cchHHHHHHHcCCCcccCC---------------CeEEE----ecHHHHHHHHHHHHH---
Q 020815 137 -----------FSAMVV--RKPAHIFLDELGIDYDEQD---------------NYVVI----KHAALFTSTIMSKLL--- 181 (321)
Q Consensus 137 -----------~~~~~~--~~~~~~~l~~~g~~~~~~~---------------~~~~~----~~~~~~~~~l~~~~~--- 181 (321)
...++. ....++||+++|++|.... ..... .....+...|.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~ 162 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAA 162 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHH
Confidence 001111 1356789999999885321 00000 112446666666553
Q ss_pred cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC-------C-CCCCceEEEcCeEEEcCCCCCC
Q 020815 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-------Q-SCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~-------~-~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+..++++++++++++|+.++++|+||.+... ..++ . ..+...++.||.||+||||++.
T Consensus 163 ~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~----~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 163 ARGLVRFRFRHRVDELVVTDGAVTGVRGTVL----EPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HhCCceEEecCEeeEEEEeCCEEEEEEEEec----ccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 2446999999999999998899999986310 0000 0 0012357899999999999874
No 34
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.59 E-value=3.2e-14 Score=140.34 Aligned_cols=141 Identities=29% Similarity=0.372 Sum_probs=99.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCccc------------chh----h------hcc-----
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL------------FSA----M------VVR----- 143 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~------------~~~----~------~~~----- 143 (321)
||||||+|++|++||+.|++. |.+|+||||....++++ +..|.+ ... . ..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~ 79 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE 79 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence 899999999999999999999 99999999987655433 111110 000 0 000
Q ss_pred ------chHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815 144 ------KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (321)
Q Consensus 144 ------~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 200 (321)
...++||+++|++|+.... +.. . ..+..+...|.+.+. +.|+++++++.+++|+.+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~ 158 (566)
T TIGR01812 80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence 1346889999999865321 110 0 123456777888776 469999999999999998
Q ss_pred CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++|.||..... .+++...+.||.||+|||+++.
T Consensus 159 ~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 159 DGRVRGVVAYDL---------KTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred CCEEEEEEEEEC---------CCCcEEEEECCeEEECCCcccC
Confidence 999999887421 1123457999999999999873
No 35
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.59 E-value=2.8e-14 Score=139.59 Aligned_cols=145 Identities=23% Similarity=0.375 Sum_probs=103.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccc---------h----hh-----------h--
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------S----AM-----------V-- 141 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~---------~----~~-----------~-- 141 (321)
.++||||||+|.||++||+.|++. .+|+||||....+|++ +.+|.+. . .. +
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 478999999999999999999874 7999999987766643 3333210 0 00 0
Q ss_pred --c--cchHHHHHHHcCCCcccCC------CeEE----------Ee-----cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815 142 --V--RKPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 196 (321)
Q Consensus 142 --~--~~~~~~~l~~~g~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~ 196 (321)
. ....++||+++|++|+... .+.. .. .+..+...|++++.+..|+++++++.+++
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~ 164 (536)
T PRK09077 85 FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAID 164 (536)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeee
Confidence 0 0134689999999997532 1111 01 23567788888887667999999999999
Q ss_pred EEEEC------CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 197 LIVKG------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 197 l~~~~------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.++ ++|.||...+. .+++...+.|+.||+|||+++..
T Consensus 165 Li~~~~~~~~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 165 LITSDKLGLPGRRVVGAYVLNR---------NKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred eeecccccCCCCEEEEEEEEEC---------CCCcEEEEecCeEEECCCCCCCC
Confidence 98764 78999987431 12244679999999999998743
No 36
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=3.6e-14 Score=139.14 Aligned_cols=143 Identities=21% Similarity=0.276 Sum_probs=99.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCcc-ccCcccc-------------hhh------hc-----
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGA-WLGGQLF-------------SAM------VV----- 142 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~-~~~g~~~-------------~~~------~~----- 142 (321)
.++||||||+|.||++||+.+ +. |.+|+||||... .||++ +.++.+. ... ..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 368999999999999999999 88 999999999864 34433 2222110 000 00
Q ss_pred ------cchHHHHHHHcCCCcccCCC--eE----------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815 143 ------RKPAHIFLDELGIDYDEQDN--YV----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (321)
Q Consensus 143 ------~~~~~~~l~~~g~~~~~~~~--~~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 199 (321)
....++||+++|++|+...+ +. .. ..+..+...|.+.+. +.|+++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence 01345889999999875321 11 01 024567788888776 58999999999999998
Q ss_pred ECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 200 KGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 200 ~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++. |.|+..... .+++...++||.||+|||+++.
T Consensus 163 ~~~~~v~Gv~~~~~---------~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 163 DENREVIGAIFLDL---------RNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred eCCcEEEEEEEEEC---------CCCcEEEEEcCcEEECCCCCCC
Confidence 8764 999876420 1123467999999999999873
No 37
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=5.3e-14 Score=138.97 Aligned_cols=145 Identities=14% Similarity=0.213 Sum_probs=100.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC-cccc----------------h-----------h--
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLF----------------S-----------A-- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~-g~~~----------------~-----------~-- 139 (321)
.+||||||+|.||++||+.+++. |++|+||||....+|++... |.+. . .
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 46999999999999999999999 99999999987665443221 1110 0 0
Q ss_pred --hhcc--chHHHHHHHcCCCcccCCC--eEE----------E-----ecHHHHHHHHHHHHHcC---CCcEEEcCceEE
Q 020815 140 --MVVR--KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLAR---PNVKLFNAVAAE 195 (321)
Q Consensus 140 --~~~~--~~~~~~l~~~g~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~ 195 (321)
.+.+ ...++||+++|++|+...+ +.. . ..+..+...|.+.+.+. .+++++.++.++
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~ 161 (589)
T PRK08641 82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL 161 (589)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence 0000 1356899999999975321 110 0 12455667777666532 238999999999
Q ss_pred EEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 196 DLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 196 ~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+|+.+ +++|.||.+.+. .+++...+.|+.||+||||++..
T Consensus 162 ~Li~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 162 GAVLDDEGVCRGIVAQDL---------FTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred EEEECCCCEEEEEEEEEC---------CCCcEEEEECCEEEECCCCCcCC
Confidence 99985 689999988531 11234578999999999998853
No 38
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.58 E-value=4.7e-14 Score=138.08 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=102.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc-------------hhh--------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF-------------SAM-------------- 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~-------------~~~-------------- 140 (321)
.++||||||+|.||++||+.+++. |.+|+||||....+|++.. +|.+. ...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 368999999999999999999999 9999999998776554322 12110 000
Q ss_pred -hcc--chHHHHHHHcCCCcccCCC--eEE----------Ee------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815 141 -VVR--KPAHIFLDELGIDYDEQDN--YVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (321)
Q Consensus 141 -~~~--~~~~~~l~~~g~~~~~~~~--~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 199 (321)
+.. ...++||.++|++|+...+ +.. .. .+..+.+.|.+++. +.++++++++.+++|+.
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEE
Confidence 000 1346899999999975321 111 10 24567788888776 56899999999999998
Q ss_pred EC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 200 KG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 200 ~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++ ++|.|+.+.+. . ++.......+.|+.||+|||+++.
T Consensus 173 ~~~g~v~Gv~~~~~----~--~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVL----G--EGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEec----c--CCCCCcEEEEEcCeEEECCCCCCC
Confidence 75 69999887420 0 000011257999999999999874
No 39
>PRK08275 putative oxidoreductase; Provisional
Probab=99.57 E-value=5.2e-14 Score=138.31 Aligned_cols=145 Identities=25% Similarity=0.433 Sum_probs=100.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cC-ccc----------c---------------hhh
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LG-GQL----------F---------------SAM 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~-~~-g~~----------~---------------~~~ 140 (321)
.++||||||+|.||++||+.+++. +|.+|+||||....+++.. .+ +.+ + +.-
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 368999999999999999999975 2689999999876433321 11 110 0 000
Q ss_pred ----hc--cchHHHHHHHcCCCcccCC--CeEE------------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815 141 ----VV--RKPAHIFLDELGIDYDEQD--NYVV------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (321)
Q Consensus 141 ----~~--~~~~~~~l~~~g~~~~~~~--~~~~------------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 200 (321)
+. ....++||+++|++|+... .+.. ...+..+...|.+++. +.|+++++++.+++|+.+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence 00 0245688999999987532 1211 0124467788888786 589999999999999987
Q ss_pred -CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 201 -GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 201 -~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++|.|+.+.+. .+++...+.||.||+|||+++.
T Consensus 167 ~~g~v~Gv~~~~~---------~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 167 ADGRVAGALGFDC---------RTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCCeEEEEEEEec---------CCCcEEEEECCEEEECCCCccc
Confidence 788999876421 1223467999999999999864
No 40
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=9.8e-14 Score=137.04 Aligned_cols=142 Identities=23% Similarity=0.338 Sum_probs=99.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccc-----------h---------------h---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF-----------S---------------A--- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~-----------~---------------~--- 139 (321)
++||||||+|.||++||+.|++ +.+|+||||....++++. .+|.+. . .
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 6899999999999999999986 489999999865554321 111110 0 0
Q ss_pred -hhc--cchHHHHHHHcCCCcccCCC--eE-----------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCc
Q 020815 140 -MVV--RKPAHIFLDELGIDYDEQDN--YV-----------------VI-----KHAALFTSTIMSKLLARPNVKLFNAV 192 (321)
Q Consensus 140 -~~~--~~~~~~~l~~~g~~~~~~~~--~~-----------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~ 192 (321)
.+. ....++||+++|++|+...+ +. .. ..+..+...|.+++. +.|+++++++
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~~ 161 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeCC
Confidence 000 11346889999999965321 10 00 023567788888776 6799999999
Q ss_pred eEEEEEEEC----CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 193 AAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 193 ~v~~l~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+++|+.++ ++|.|+...+. .+++...+.|+.||+|||+++.
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYEL---------ATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEEc---------CCCeEEEEEeCeEEECCCCCcc
Confidence 999999876 78999987321 1123457899999999999873
No 41
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.55 E-value=5.6e-14 Score=136.72 Aligned_cols=141 Identities=26% Similarity=0.424 Sum_probs=99.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCcc-ccCcccc---------h----hh-------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGA-WLGGQLF---------S----AM------------- 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~-~~~g~~~---------~----~~------------- 140 (321)
.++||||||+|.||++||+.++ +.+|+||||... .+|++ +.+|.+. . ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 4789999999999999999996 469999999876 34433 3333221 0 00
Q ss_pred --hc--cchHHHHHHHcCCCcccCCC--eEE----------E------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815 141 --VV--RKPAHIFLDELGIDYDEQDN--YVV----------I------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (321)
Q Consensus 141 --~~--~~~~~~~l~~~g~~~~~~~~--~~~----------~------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 198 (321)
+. ....++||+++|++|+.... +.. . ..+..+...|.+.+.+..|+++++++.+++|+
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li 164 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence 00 01346899999999875321 111 0 12356778888888655699999999999998
Q ss_pred EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.++++|.|+.+... +....+.||.||+||||++.
T Consensus 165 ~~~g~v~Gv~~~~~-----------~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 165 VDDGAVAGVLAATA-----------GGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred ecCCEEEEEEEEeC-----------CeEEEEECCEEEEcCCCCcC
Confidence 88899999887420 12247999999999999763
No 42
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.55 E-value=1.3e-13 Score=131.37 Aligned_cols=135 Identities=26% Similarity=0.404 Sum_probs=89.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHc----------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL---------------- 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~---------------- 153 (321)
+|||||||||++|++||+.|++. |++|+||||...++.....++.+....+..- ..++....
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEEEEcC
Confidence 59999999999999999999999 9999999999877654333333221111000 00000000
Q ss_pred -C---CCccc-----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC
Q 020815 154 -G---IDYDE-----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (321)
Q Consensus 154 -g---~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (321)
+ +.+.. .....+......|.+.|.+++. +.|++++.+++|+++..+++++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~-------------- 147 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD-------------- 147 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence 0 01100 0011122345677788888876 6799999999999998888877665531
Q ss_pred CceEEEcCeEEEcCCCCC
Q 020815 225 DPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 225 ~~~~i~a~~VI~AtG~~~ 242 (321)
+.+++|+.||+|+|..+
T Consensus 148 -g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 148 -GDVIEAKTVILADGVNS 164 (428)
T ss_pred -CcEEECCEEEEEeCCCH
Confidence 25799999999999654
No 43
>PRK06185 hypothetical protein; Provisional
Probab=99.54 E-value=3.6e-13 Score=127.58 Aligned_cols=135 Identities=25% Similarity=0.390 Sum_probs=90.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------ 156 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------ 156 (321)
.++||+|||||++|+++|+.|++. |++|+|||+.+..... . .+ ........+.|+++|+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~~-~-r~-----~~l~~~s~~~L~~lG~~~~~~~~~~~~~~ 76 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLRD-F-RG-----DTVHPSTLELMDELGLLERFLELPHQKVR 76 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcc-c-cC-----ceeChhHHHHHHHcCChhHHhhcccceee
Confidence 469999999999999999999999 9999999997533110 0 00 01112223333333331
Q ss_pred ---------------cccC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 157 ---------------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 157 ---------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
+... ..+........+.+.|++++.+..|++++++++++++..+++++.+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~------- 149 (407)
T PRK06185 77 TLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART------- 149 (407)
T ss_pred eEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-------
Confidence 0000 011223344567788888876567999999999999999888887776532
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.+ ...+++||.||.|+|.++
T Consensus 150 ---~~-g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 150 ---PD-GPGEIRADLVVGADGRHS 169 (407)
T ss_pred ---CC-CcEEEEeCEEEECCCCch
Confidence 00 125799999999999655
No 44
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.54 E-value=1.1e-13 Score=134.52 Aligned_cols=140 Identities=25% Similarity=0.333 Sum_probs=99.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccch-------------hh---------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------AM--------------- 140 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~~-------------~~--------------- 140 (321)
++||||||+|.||++||+.+++ |.+|+||||....+|++ +.+|.+.. ..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 5899999999999999999964 78999999998766665 23332110 00
Q ss_pred hcc--chHHHHHHHcCCCcccCC--CeE----------EEe------cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE
Q 020815 141 VVR--KPAHIFLDELGIDYDEQD--NYV----------VIK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (321)
Q Consensus 141 ~~~--~~~~~~l~~~g~~~~~~~--~~~----------~~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 200 (321)
+.+ ...++||.++|++|+... .+. ... ....+.+.|.+.+. .|+++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence 000 134578999999997431 111 111 13456777777664 58999999999999988
Q ss_pred CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++|.|+.+.+ .+++...++||.||+|||+++.
T Consensus 159 ~g~v~Gv~~~~----------~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 NGRCIGVLTKD----------SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCEEEEEEEEE----------CCCcEEEEEcCeEEEecCCCcc
Confidence 89999998743 1123457999999999999874
No 45
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.54 E-value=1.2e-13 Score=130.39 Aligned_cols=140 Identities=23% Similarity=0.283 Sum_probs=93.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh----ccchH--HHHHHHc-----CCCc-
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV----VRKPA--HIFLDEL-----GIDY- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~----~~~~~--~~~l~~~-----g~~~- 157 (321)
+|||+||||||||++||+.|++. |++|+|+||+..+|.....++.+....+ ..... ....... +-.+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 69999999999999999999999 9999999999988875544232221111 11100 0000000 0000
Q ss_pred -ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815 158 -DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (321)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~ 236 (321)
..............|.++|.+++. +.|++++.++++.++..+++.+..+.... ..+++||+||+
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~a~~vI~ 146 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRAG--------------DDEVRAKVVID 146 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEcC--------------CEEEEcCEEEE
Confidence 000011334456788888888886 78999999999999999886655544421 16899999999
Q ss_pred cCCCCCCCc
Q 020815 237 SCGHDGPFG 245 (321)
Q Consensus 237 AtG~~~~~~ 245 (321)
|+|..+.+.
T Consensus 147 AdG~~s~l~ 155 (396)
T COG0644 147 ADGVNSALA 155 (396)
T ss_pred CCCcchHHH
Confidence 999766544
No 46
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.54 E-value=1.9e-13 Score=133.17 Aligned_cols=141 Identities=23% Similarity=0.390 Sum_probs=97.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cc-ccc-----------------------hhh---
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GG-QLF-----------------------SAM--- 140 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g-~~~-----------------------~~~--- 140 (321)
.++||||||+| +|++||++|++. |.+|+||||....||++.. ++ .+. ...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 83 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGD 83 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcc
Confidence 37899999999 999999999999 9999999998876665522 11 110 000
Q ss_pred hcc-----------chHHHHHHH-cCCCcccCC--------------C-eEEE---------------------------
Q 020815 141 VVR-----------KPAHIFLDE-LGIDYDEQD--------------N-YVVI--------------------------- 166 (321)
Q Consensus 141 ~~~-----------~~~~~~l~~-~g~~~~~~~--------------~-~~~~--------------------------- 166 (321)
... ...++||++ .|++|.... . ....
T Consensus 84 ~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (513)
T PRK12837 84 RTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGA 163 (513)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhcc
Confidence 000 123578876 577764210 0 0000
Q ss_pred ------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC-eEEEcCC
Q 020815 167 ------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCG 239 (321)
Q Consensus 167 ------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG 239 (321)
.....+...+++.+.++.|+++++++++++|+.++++|.||+... +++..+++|+ .||+|||
T Consensus 164 ~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtG 232 (513)
T PRK12837 164 PPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAG 232 (513)
T ss_pred CCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCC
Confidence 002346666777776567999999999999999889999998742 1234679996 7999999
Q ss_pred CCC
Q 020815 240 HDG 242 (321)
Q Consensus 240 ~~~ 242 (321)
+++
T Consensus 233 G~~ 235 (513)
T PRK12837 233 GFE 235 (513)
T ss_pred Ccc
Confidence 975
No 47
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.53 E-value=1.7e-13 Score=135.01 Aligned_cols=141 Identities=19% Similarity=0.315 Sum_probs=96.5
Q ss_pred cEEEECCChHHHHHHHHhh----cCCCCeEEEEeccCCCCCccccCcc--c------------chhh-------------
Q 020815 92 DVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQ--L------------FSAM------------- 140 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La----~~~G~~V~liEk~~~~gg~~~~~g~--~------------~~~~------------- 140 (321)
||||||+|.|||.||+.++ +. |.+|+||||....+.+++.+|. + ....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 67 9999999998654433333331 0 0000
Q ss_pred ------hcc--chHHHHHHHcCCCcccCC-CeEEE--------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--
Q 020815 141 ------VVR--KPAHIFLDELGIDYDEQD-NYVVI--------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-- 201 (321)
Q Consensus 141 ------~~~--~~~~~~l~~~g~~~~~~~-~~~~~--------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-- 201 (321)
+.+ ...++||.++|++|+... ..... ..+..+.+.+...+. +.++++++++.+++|+.++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~-~~~~~i~~~~~v~~Ll~d~~~ 158 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAK-NALGDIFERIFIVKLLLDKNT 158 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHH-hCCCeEEcccEEEEEEecCCC
Confidence 000 135689999999996531 11111 123445555555554 4568999999999999865
Q ss_pred -CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 202 -~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++|.||.+.+. .+++...+.||.||+|||+++.
T Consensus 159 ~GrV~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 159 PNRIAGAVGFNV---------RANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred CCeEEEEEEEEe---------CCCcEEEEECCEEEECCCcccc
Confidence 79999987431 1224467999999999999874
No 48
>PRK08013 oxidoreductase; Provisional
Probab=99.53 E-value=3.5e-13 Score=127.52 Aligned_cols=145 Identities=19% Similarity=0.307 Sum_probs=91.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------- 156 (321)
++||+|||||++|+++|+.|++. |++|+|||+.+.+..... .+.............+.|+++|+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~g-~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAAD-APPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCcccccC-CCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 58999999999999999999999 999999999865321100 000011111122333444444431
Q ss_pred -------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
++.. .......+...+.+.|++++.+..|++++++++++++..+++.+. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------- 150 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLK--------- 150 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEc---------
Confidence 0000 001123345677788888887656899999999999987766443 2221
Q ss_pred CCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g 256 (321)
++.+++||+||.|+|.+ |.+|+..+++
T Consensus 151 -----~g~~i~a~lvVgADG~~-----S~vR~~~~~~ 177 (400)
T PRK08013 151 -----DGSMLTARLVVGADGAN-----SWLRNKADIP 177 (400)
T ss_pred -----CCCEEEeeEEEEeCCCC-----cHHHHHcCCC
Confidence 22679999999999954 4455544433
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.6e-13 Score=134.59 Aligned_cols=44 Identities=30% Similarity=0.540 Sum_probs=39.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g 134 (321)
.+|||||||+| +|++||+.+++. |++|+||||.+..||++...+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCcccCcC
Confidence 37999999999 899999999999 999999999988888775443
No 50
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.53 E-value=1.8e-13 Score=126.33 Aligned_cols=141 Identities=23% Similarity=0.328 Sum_probs=90.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------- 156 (321)
+|||+|||||++|+++|+.|++. |++|+|||+.+.+.... .+ ........+.|+++|+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~--~~-----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKG--RG-----IGLSPNSLRILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSS--SS-----EEEEHHHHHHHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccccccc--cc-----cccccccccccccccchhhhhhhcccccce
Confidence 37999999999999999999999 99999999987553221 11 11112223334433321
Q ss_pred ----ccc---------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEee
Q 020815 157 ----YDE---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 211 (321)
Q Consensus 157 ----~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~ 211 (321)
+.. ........+...+.+.|.+.+. +.+++++++++++++..+++.+..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~~ 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRDG 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeecccccccccccccccccc
Confidence 000 0111223345677788888876 45799999999999998888766554421
Q ss_pred cceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhh
Q 020815 212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKS 254 (321)
Q Consensus 212 ~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~ 254 (321)
.+++..+++||+||.|+| .+|.+|+...
T Consensus 152 ----------~~g~~~~i~adlvVgADG-----~~S~vR~~l~ 179 (356)
T PF01494_consen 152 ----------EDGEEETIEADLVVGADG-----AHSKVRKQLG 179 (356)
T ss_dssp ----------CTCEEEEEEESEEEE-SG-----TT-HHHHHTT
T ss_pred ----------cCCceeEEEEeeeecccC-----cccchhhhcc
Confidence 123446899999999999 5555665543
No 51
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.53 E-value=1.8e-13 Score=144.31 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc--------------------chhh------
Q 020815 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL--------------------FSAM------ 140 (321)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~--------------------~~~~------ 140 (321)
+.++||||||+|.||++||+.+++. |.+|+||||....||++.. ++.+ ....
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 4579999999999999999999999 9999999999888776531 1110 0000
Q ss_pred -hcc-----------chHHHHHHHcCCCcccCC--------CeEEE---------ecHHHHHHHHHHHHHc--CCCcEEE
Q 020815 141 -VVR-----------KPAHIFLDELGIDYDEQD--------NYVVI---------KHAALFTSTIMSKLLA--RPNVKLF 189 (321)
Q Consensus 141 -~~~-----------~~~~~~l~~~g~~~~~~~--------~~~~~---------~~~~~~~~~l~~~~~~--~~gv~i~ 189 (321)
..+ .+.++||+++|++|.... ..... .....+...|.+.+.+ +.|++|+
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~ 565 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM 565 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE
Confidence 000 134689999999885410 01100 0134455666666553 2599999
Q ss_pred cCceEEEEEEEC---------CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 190 NAVAAEDLIVKG---------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 190 ~~~~v~~l~~~~---------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++++++|+.++ ++|+||.+.+. ...+++...+.||.||+||||++.
T Consensus 566 ~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~-------~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 566 TETTVTSLLSESSARPDGVREIRVTGVRYKQA-------SDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred ECCEEEEEEecCCcccCCCccceEEEEEEEec-------ccCCCcEEEEEeceEEEecCCccc
Confidence 999999999864 28999988530 001235578999999999999875
No 52
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.52 E-value=2.3e-13 Score=131.08 Aligned_cols=136 Identities=21% Similarity=0.358 Sum_probs=96.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc---------h----hh---------------hc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF---------S----AM---------------VV 142 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~---------~----~~---------------~~ 142 (321)
+||||||+|++|++||+.|++. |.+|+||||....+.+.+..+.+. . .. +.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5999999999999999999999 999999999854333222222110 0 00 00
Q ss_pred --cchHHHHHHHcCCCcccCC-----CeEEE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815 143 --RKPAHIFLDELGIDYDEQD-----NYVVI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (321)
Q Consensus 143 --~~~~~~~l~~~g~~~~~~~-----~~~~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~ 210 (321)
....++||+++|++|+... .+... .....+.+.|.+.+. +.|+++++. .++++..+++++.|+.+.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence 0134579999999986431 11111 124567788888886 679999876 888988888899888762
Q ss_pred ecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
...+.++.||+|||+++..
T Consensus 159 ---------------g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 159 ---------------GELLKFDATVIATGGFSGL 177 (466)
T ss_pred ---------------CEEEEeCeEEECCCcCcCC
Confidence 2578999999999998754
No 53
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.52 E-value=2e-13 Score=134.11 Aligned_cols=141 Identities=28% Similarity=0.442 Sum_probs=99.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccccc-----------------------hhhh----
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF-----------------------SAMV---- 141 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~~-----------------------~~~~---- 141 (321)
++||||||+|.+|+++|+.|++. |++|+||||....||++.. ++++. ....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 84 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQG 84 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccc
Confidence 68999999999999999999999 9999999998777776422 22210 0000
Q ss_pred --cc-----------chHHHHHHHcCCCcccCC---CeE----------EE-----------------------------
Q 020815 142 --VR-----------KPAHIFLDELGIDYDEQD---NYV----------VI----------------------------- 166 (321)
Q Consensus 142 --~~-----------~~~~~~l~~~g~~~~~~~---~~~----------~~----------------------------- 166 (321)
.. .+.++||+++|++|.... .++ ..
T Consensus 85 ~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (557)
T PRK12844 85 PASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTV 164 (557)
T ss_pred cCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccccc
Confidence 00 134688999999885321 000 00
Q ss_pred ----------------------------------------ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEE
Q 020815 167 ----------------------------------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 206 (321)
Q Consensus 167 ----------------------------------------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~g 206 (321)
..+..+...|.++++ +.|++++.+++|++|+.++++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~G 243 (557)
T PRK12844 165 VMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVG 243 (557)
T ss_pred ccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEE
Confidence 002334556666665 679999999999999999999999
Q ss_pred EEEeecceecccCCCCCCCceEEEcC-eEEEcCCCCCC
Q 020815 207 VVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDGP 243 (321)
Q Consensus 207 v~~~~~~~~~~~~~~~~g~~~~i~a~-~VI~AtG~~~~ 243 (321)
|.+.. +++..++.|+ .||+|||+++.
T Consensus 244 v~~~~-----------~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 244 VVVVR-----------DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred EEEEE-----------CCeEEEEEecceEEEecCCccC
Confidence 98742 1234678895 79999999874
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.52 E-value=1.4e-13 Score=131.13 Aligned_cols=138 Identities=22% Similarity=0.413 Sum_probs=89.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch----hhhcc----chHHHHHHH---------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS----AMVVR----KPAHIFLDE--------- 152 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~----~~~~~----~~~~~~l~~--------- 152 (321)
+|||||||||++|++||+.|++. |++|+||||...+|.....++.+.. .+... ....+....
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 69999999999999999999999 9999999998876643222222211 11000 000000000
Q ss_pred --cCCCcccC-----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 153 --LGIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 153 --~g~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
..+++... ....+......|.+.|.+++. +.|++++.+++|+++..+++++.++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~--------------- 147 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG--------------- 147 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC---------------
Confidence 01111110 001122344667777888876 6799999999999998888887777652
Q ss_pred ceEEEcCeEEEcCCCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~~ 244 (321)
..+++|+.||+|+|..+.+
T Consensus 148 ~~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 148 DDILEANVVILADGVNSML 166 (429)
T ss_pred CeEEECCEEEEccCcchhh
Confidence 2579999999999976543
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.52 E-value=2.6e-13 Score=140.08 Aligned_cols=146 Identities=20% Similarity=0.315 Sum_probs=99.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC--ccc----------chh---------------hh
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG--GQL----------FSA---------------MV 141 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~--g~~----------~~~---------------~~ 141 (321)
.++||||||+|.+|+.||+.+++. |.+|+||||.....++.... +.+ +.. .+
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 368999999999999999999999 99999999986422111110 000 000 00
Q ss_pred c------cchHHHHHHHcCCCcccCCC--eEE------------EecHHHHHHHHHHHHHcC---CCcEEEcCceEEEEE
Q 020815 142 V------RKPAHIFLDELGIDYDEQDN--YVV------------IKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLI 198 (321)
Q Consensus 142 ~------~~~~~~~l~~~g~~~~~~~~--~~~------------~~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~~l~ 198 (321)
. ....++||+++|++|+.... +.. ...+..+...|++.+.+. .+++++.++.+++|+
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li 170 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL 170 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence 0 01356899999999976422 110 012345556666665432 479999999999999
Q ss_pred EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
.++++|.|+...+. .+|+...+.||.||+||||++..
T Consensus 171 ~~~g~v~Gv~~~~~---------~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 171 TEGGRAVGAAALNT---------RTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred eeCCEEEEEEEEec---------CCCcEEEEECCEEEECCCccccC
Confidence 88999999987431 12345789999999999998743
No 56
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.51 E-value=3.8e-13 Score=124.28 Aligned_cols=132 Identities=27% Similarity=0.370 Sum_probs=87.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhh--------h--ccchH---------------
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM--------V--VRKPA--------------- 146 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~--------~--~~~~~--------------- 146 (321)
||+|||||++|+++|++|++. |.+|+|||++...++.+...+.++... . .....
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 899999999999999999999 999999999954444443222211111 0 00000
Q ss_pred -----------------------HHHHHHcCCCccc-------------CCC--------eEEEecHHHHHHHHHHHHHc
Q 020815 147 -----------------------HIFLDELGIDYDE-------------QDN--------YVVIKHAALFTSTIMSKLLA 182 (321)
Q Consensus 147 -----------------------~~~l~~~g~~~~~-------------~~~--------~~~~~~~~~~~~~l~~~~~~ 182 (321)
.+.++..++++.. ... -....+...+.+.|.+.+.
T Consensus 80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~- 158 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ- 158 (358)
T ss_dssp EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence 1122333332110 000 0012356788899988887
Q ss_pred CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
+.|++++.+++|++|..+++++.+|.+.+ ..++||.||+|+|.
T Consensus 159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~---------------g~i~ad~vV~a~G~ 201 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSD---------------GEIRADRVVLAAGA 201 (358)
T ss_dssp HTT-EEEESEEEEEEEEETTEEEEEEETT---------------EEEEECEEEE--GG
T ss_pred Hhhhhccccccccchhhcccccccccccc---------------cccccceeEecccc
Confidence 56999999999999999999999999853 45999999999994
No 57
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.50 E-value=2.5e-13 Score=134.31 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=95.3
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC-Ccc-ccCccc------------chh-------------------
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGA-WLGGQL------------FSA------------------- 139 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g-g~~-~~~g~~------------~~~------------------- 139 (321)
|||||+|.||++||+.+++. |.+|+||||...++ +++ +..|.+ +..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999 99999999987443 222 222110 000
Q ss_pred hhc--cchHHHHHHHcCCCcccCCC--eE--E------------E-ecHHHHHHHHHHHHHc---CCCcEEEcCceEEEE
Q 020815 140 MVV--RKPAHIFLDELGIDYDEQDN--YV--V------------I-KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL 197 (321)
Q Consensus 140 ~~~--~~~~~~~l~~~g~~~~~~~~--~~--~------------~-~~~~~~~~~l~~~~~~---~~gv~i~~~~~v~~l 197 (321)
.+. ....++||+++|++|+...+ +. . . ..+..+...|.+.+.+ ..|+++++++.+++|
T Consensus 80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 000 12356899999999865321 00 0 0 1234566666555532 358999999999999
Q ss_pred EEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.++ ++|.||.+.+. .+++...+.||.||+||||++.
T Consensus 160 i~dd~grV~GV~~~~~---------~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 160 IVVDGNRARGIIARNL---------VTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred EEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEECCCCCcC
Confidence 9864 69999987531 1223467999999999999863
No 58
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.50 E-value=5.8e-13 Score=125.47 Aligned_cols=138 Identities=25% Similarity=0.368 Sum_probs=99.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCcccchhhhccchHHHHHHHcCC-Cc----------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-DY---------- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~-~~---------- 157 (321)
.+||+|||||++|+++|+.|++. |++|+|||+.+ ..-.. + .........++.|+++|+ +-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~~~~----~---r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLER----G---RGIALSPNALRALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCccccccC----c---eeeeecHhHHHHHHHcCChhhhhhccCCcee
Confidence 47999999999999999999999 99999999972 21110 0 223344556677777776 20
Q ss_pred ----ccC--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 158 ----DEQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 158 ----~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
+.. ..+....+...+.+.|++++.+..+++++.+++|+.+..+++.+. +... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~-------~- 144 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLS-------F- 144 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEc-------C-
Confidence 000 112234456788899999998778899999999999999888777 5543 0
Q ss_pred CCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhh
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKS 254 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~ 254 (321)
++.+++||+||.|+| .+|.+|+...
T Consensus 145 -----dG~~~~a~llVgADG-----~~S~vR~~~~ 169 (387)
T COG0654 145 -----DGETLDADLLVGADG-----ANSAVRRAAG 169 (387)
T ss_pred -----CCcEEecCEEEECCC-----CchHHHHhcC
Confidence 124899999999999 5566666655
No 59
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=3.9e-13 Score=132.58 Aligned_cols=41 Identities=29% Similarity=0.599 Sum_probs=37.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.++||||||+|.+|++||+.|++. |++|+||||....||++
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCchH
Confidence 368999999999999999999999 99999999998777643
No 60
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.48 E-value=1.5e-12 Score=122.86 Aligned_cols=136 Identities=22% Similarity=0.343 Sum_probs=86.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC----------cc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID----------YD 158 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~----------~~ 158 (321)
..+||+|||||++|+++|+.|+++ |++|+|||+.+.+.-.. .+.............+.|+++|+. +.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~~--~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQA--DQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR 81 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCccccc--CCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence 368999999999999999999999 99999999986432100 000000011122233334443331 10
Q ss_pred c--------------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 E--------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 ~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
. ...+.+..+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~-------- 151 (392)
T PRK08773 82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLD-------- 151 (392)
T ss_pred EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEEC--------
Confidence 0 0011122344667778888776 57999999999999987776543 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||.||.|+|..+.
T Consensus 152 ------~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 152 ------DGRRLEAALAIAADGAAST 170 (392)
T ss_pred ------CCCEEEeCEEEEecCCCch
Confidence 1257999999999996653
No 61
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.48 E-value=1.2e-12 Score=118.10 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=86.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhc--cchHHHHHHHcC-C----------Cc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV--RKPAHIFLDELG-I----------DY 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~--~~~~~~~l~~~g-~----------~~ 157 (321)
|||+|||||++|+++|+.|++. |++|+|||+...++. .+.+..+....+. ............ . .+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 6999999999999999999999 999999999876543 2222221110000 000000000000 0 00
Q ss_pred ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815 158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (321)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A 237 (321)
..........+...+.+.|.+.+. +.|++++++++++++..+++.+... ... +..++++|+||+|
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~a~~vv~a 143 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVVVI-VRG-------------GEGTVTAKIVIGA 143 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEEEE-EcC-------------ccEEEEeCEEEEC
Confidence 001122334556778888888886 6799999999999998887754322 211 2368999999999
Q ss_pred CCCCCC
Q 020815 238 CGHDGP 243 (321)
Q Consensus 238 tG~~~~ 243 (321)
+|.++.
T Consensus 144 ~G~~s~ 149 (295)
T TIGR02032 144 DGSRSI 149 (295)
T ss_pred CCcchH
Confidence 996653
No 62
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.48 E-value=6.9e-13 Score=126.99 Aligned_cols=139 Identities=27% Similarity=0.300 Sum_probs=94.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCcccc-Ccccc--------------------hhhh------cc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWL-GGQLF--------------------SAMV------VR 143 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~-~g~~~--------------------~~~~------~~ 143 (321)
||||||+|.+|++||+.|++. | .+|+||||....||++.. ++.+. ...+ .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999 9 999999999877765432 11110 0000 00
Q ss_pred -----------chHHHHHHHcCCCcccCC-----C--eEE-------EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815 144 -----------KPAHIFLDELGIDYDEQD-----N--YVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (321)
Q Consensus 144 -----------~~~~~~l~~~g~~~~~~~-----~--~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 198 (321)
...++|+. .++.+.... . +.. ......+...|.+.+. +.|+++++++++++|+
T Consensus 80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~ 157 (439)
T TIGR01813 80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence 12346776 444332210 0 000 0134567788888876 6799999999999999
Q ss_pred EE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 199 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 199 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+ ++++.+|++.. .+++...+.+|.||+|+|+++.
T Consensus 158 ~~~~g~v~Gv~~~~----------~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKG----------KGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEe----------CCCeEEEEecceEEEecCCCCC
Confidence 86 56888887742 1112346889999999998875
No 63
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.47 E-value=1.8e-13 Score=133.26 Aligned_cols=143 Identities=24% Similarity=0.368 Sum_probs=103.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-Ccc-------c-------ch---------------h
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQ-------L-------FS---------------A 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~-------~-------~~---------------~ 139 (321)
++||||||+|.|||.||+.+++. |++|+|+||....+|.+.. .+. . ++ +
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dq 84 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQ 84 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCH
Confidence 69999999999999999999999 8999999998766543211 110 0 00 0
Q ss_pred -----hhcc-chHHHHHHHcCCCcccCCCe----------------EEEe-cHHHHHHHHHHHHHcCCCcEEEcCceEEE
Q 020815 140 -----MVVR-KPAHIFLDELGIDYDEQDNY----------------VVIK-HAALFTSTIMSKLLARPNVKLFNAVAAED 196 (321)
Q Consensus 140 -----~~~~-~~~~~~l~~~g~~~~~~~~~----------------~~~~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~~ 196 (321)
++.. ...+.+|+++|++|.+.... +..+ -...+...|.+++.+..+++++.+..+++
T Consensus 85 d~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~ 164 (562)
T COG1053 85 DAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLD 164 (562)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhh
Confidence 0001 13568899999998655321 1111 24567888999998667889999999999
Q ss_pred EEEECCE-EEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 197 LIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 197 l~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
|+.+++. |.|+...+. .+++...+++|.||+||||.+
T Consensus 165 l~~~~~~~v~Gvv~~~~---------~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 165 LLVDDGGGVAGVVARDL---------RTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred heecCCCcEEEEEEEEe---------cCCcEEEEecCcEEEccCCce
Confidence 9988655 888887542 223557899999999999988
No 64
>PRK08244 hypothetical protein; Provisional
Probab=99.47 E-value=2.3e-12 Score=125.18 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=84.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC--------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------------- 155 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~-------------- 155 (321)
++||+||||||+|+++|+.|++. |++|+||||.+.+.... .+ ........+.|+++|+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~~~--ra-----~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 73 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVPYS--KA-----LTLHPRTLEILDMRGLLERFLEKGRKLPSG 73 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc--ce-----eEecHHHHHHHHhcCcHHHHHhhcccccce
Confidence 48999999999999999999999 99999999986542110 00 1111122222222222
Q ss_pred ---------Cccc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCC
Q 020815 156 ---------DYDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 223 (321)
Q Consensus 156 ---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~ 223 (321)
++.. ...+....+...+.+.|.+.+. +.|++++.+++++++..+++.+. +.+.. .+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~----------~~ 141 (493)
T PRK08244 74 HFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHAR-SLGVEIFRGAEVLAVRQDGDGVE-VVVRG----------PD 141 (493)
T ss_pred EEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEEcCCeEE-EEEEe----------CC
Confidence 1110 0122333455666677766665 57999999999999988777553 22221 01
Q ss_pred CCceEEEcCeEEEcCCCCC
Q 020815 224 MDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 224 g~~~~i~a~~VI~AtG~~~ 242 (321)
+ ..+++||+||.|+|..+
T Consensus 142 g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 142 G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred c-cEEEEeCEEEECCCCCh
Confidence 1 25799999999999554
No 65
>PRK07190 hypothetical protein; Provisional
Probab=99.47 E-value=1.8e-12 Score=125.33 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=87.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cc---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY--- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~--- 157 (321)
.+||+|||||++|+++|+.|++. |++|+||||.+.+...... ........+.++.+|+ ++
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~gra-------~~l~~~tle~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVGRA-------DALNARTLQLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccccc-------eEeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence 58999999999999999999999 9999999998755321100 0011111112222111 00
Q ss_pred ----------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815 158 ----------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (321)
Q Consensus 158 ----------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~ 217 (321)
+.. ..+........+...|.+++. +.|++++++++|+++..+++.+... +.
T Consensus 77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~-~~Gv~v~~~~~v~~l~~~~~~v~v~-~~------- 147 (487)
T PRK07190 77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLK-EAGAAVKRNTSVVNIELNQAGCLTT-LS------- 147 (487)
T ss_pred EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeeEEE-EC-------
Confidence 000 011122334455556666665 5799999999999999887754422 21
Q ss_pred cCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCC
Q 020815 218 HDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257 (321)
Q Consensus 218 ~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~ 257 (321)
++.+++||+||.|+| .++.+|+..++++
T Consensus 148 -------~g~~v~a~~vVgADG-----~~S~vR~~lgi~f 175 (487)
T PRK07190 148 -------NGERIQSRYVIGADG-----SRSFVRNHFNVPF 175 (487)
T ss_pred -------CCcEEEeCEEEECCC-----CCHHHHHHcCCCc
Confidence 125899999999999 4566666655544
No 66
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.46 E-value=7.9e-13 Score=128.56 Aligned_cols=137 Identities=29% Similarity=0.418 Sum_probs=90.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCC-ccc--cCc----ccchhhh-ccchHHHHHHHcCCCcccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGG-GAW--LGG----QLFSAMV-VRKPAHIFLDELGIDYDEQ 160 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg-~~~--~~g----~~~~~~~-~~~~~~~~l~~~g~~~~~~ 160 (321)
+|||||||||+||+.||+.|++. |.+|+|||++. .+|+ .|. .+| .+...+- ......+.++..++.+...
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 69999999999999999999999 99999999973 4443 111 111 1111110 0011223444555544321
Q ss_pred C----CeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815 161 D----NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (321)
Q Consensus 161 ~----~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~ 232 (321)
. .... ..+...|...+.+.+.+..|++++.. .|+++..+++++.+|.+.+ +..+.|+
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~d--------------G~~I~Ak 147 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQD--------------GLEFRAK 147 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECC--------------CCEEECC
Confidence 1 1111 22345667777777776679998754 7899998999999998853 3689999
Q ss_pred eEEEcCCCCC
Q 020815 233 VVVSSCGHDG 242 (321)
Q Consensus 233 ~VI~AtG~~~ 242 (321)
.||+|||.+.
T Consensus 148 ~VIlATGTFL 157 (618)
T PRK05192 148 AVVLTTGTFL 157 (618)
T ss_pred EEEEeeCcch
Confidence 9999999653
No 67
>PRK06184 hypothetical protein; Provisional
Probab=99.46 E-value=2.2e-12 Score=125.62 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=88.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cccc-
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE- 159 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~~- 159 (321)
++||+|||||++|+++|+.|++. |++|+||||.+.+..... + ........+.|+++|+ ++..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~r-a------~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGSR-G------KGIQPRTQEVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCcc-c------eeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 999999999865432110 0 0111222333333332 1100
Q ss_pred -----CC-------------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815 160 -----QD-------------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 215 (321)
Q Consensus 160 -----~~-------------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~ 215 (321)
.. ......+...+.+.|.+.+. +.|++++++++++++..+++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~~---- 149 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAGP---- 149 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEeC----
Confidence 00 01122334456667777776 46999999999999988776554332110
Q ss_pred cccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256 (321)
Q Consensus 216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g 256 (321)
+ +..+++||+||.|+|.. |.+|+..++.
T Consensus 150 ---~-----~~~~i~a~~vVgADG~~-----S~vR~~lgi~ 177 (502)
T PRK06184 150 ---A-----GEETVRARYLVGADGGR-----SFVRKALGIG 177 (502)
T ss_pred ---C-----CeEEEEeCEEEECCCCc-----hHHHHhCCCC
Confidence 1 23689999999999954 4455544433
No 68
>PLN02985 squalene monooxygenase
Probab=99.46 E-value=3.1e-12 Score=124.34 Aligned_cols=136 Identities=25% Similarity=0.373 Sum_probs=88.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------ 156 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------ 156 (321)
.++||+|||||++|+++|+.|++. |.+|+|+||........+ + ........+.|+++|+.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~~--g-----~~L~p~g~~~L~~LGl~d~l~~~~~~~~~ 113 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERMM--G-----EFMQPGGRFMLSKLGLEDCLEGIDAQKAT 113 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCcccc--c-----cccCchHHHHHHHcCCcchhhhccCcccc
Confidence 468999999999999999999999 999999999743211111 0 11111222233333321
Q ss_pred --------------cccCC------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815 157 --------------YDEQD------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 216 (321)
Q Consensus 157 --------------~~~~~------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~ 216 (321)
+.... ......+...+.+.|++++.+..|++++.+ +++++..+++.+.+|....
T Consensus 114 ~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~----- 187 (514)
T PLN02985 114 GMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN----- 187 (514)
T ss_pred cEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc-----
Confidence 11000 011233456788889998876778999876 6888877778777887642
Q ss_pred ccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 217 NHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+|+..+++||.||.|+|.++.
T Consensus 188 -----~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 188 -----SAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred -----CCCCEEEEECCEEEECCCCchH
Confidence 1223457889999999996553
No 69
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=121.45 Aligned_cols=140 Identities=25% Similarity=0.327 Sum_probs=96.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------ 156 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------ 156 (321)
..+||||||||.+|.+.|+.|++. |.||.||||.-.--. ...--+..+.....|.++|+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~EPd-------RivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~ 115 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSEPD-------RIVGELLQPGGYLALSKLGLEDCVEGIDAQRVT 115 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhC-CcEEEEEecccccch-------HHHHHhcCcchhHHHHHhCHHHHhhcccceEee
Confidence 368999999999999999999999 999999999632110 000011122222334444432
Q ss_pred --------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
|... +.-....|...|.+.|.+++...+|+++.++ .|.+++.|++.|.||+..+
T Consensus 116 Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~------- 187 (509)
T KOG1298|consen 116 GYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKN------- 187 (509)
T ss_pred eeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEec-------
Confidence 1100 0001123456788999999998999999988 7889998999999999864
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCCCcch
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGPFGAT 247 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~~~~~ 247 (321)
+.++..+..|...|+|+|.++.+.++
T Consensus 188 ---k~gee~~~~ApLTvVCDGcfSnlRrs 213 (509)
T KOG1298|consen 188 ---KEGEEVEAFAPLTVVCDGCFSNLRRS 213 (509)
T ss_pred ---CCCceEEEecceEEEecchhHHHHHH
Confidence 22345788899999999988765543
No 70
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.46 E-value=1.8e-12 Score=128.05 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=38.9
Q ss_pred ccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..+.++||||||+|++|++||+.|++. |.+|+||||....||++
T Consensus 5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 5 TNELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CcCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcc
Confidence 344579999999999999999999999 99999999998877654
No 71
>PRK09126 hypothetical protein; Provisional
Probab=99.46 E-value=3e-12 Score=120.63 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=86.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCcccchhhhccchHHHHHHHcCCC------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLFSAMVVRKPAHIFLDELGID------------ 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~-~~g~~~~~~~~~~~~~~~l~~~g~~------------ 156 (321)
++||+|||||++|+++|+.|++. |++|+|+||...+.-... ..| ..........+.|+++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g---~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~ 78 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDG---REIALTHASREILQRLGAWDRIPEDEISPLR 78 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCch---hHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence 58999999999999999999999 999999999875321000 000 0011122233444444431
Q ss_pred --------------ccc----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 157 --------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 157 --------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
+.. ...+....+...+.+.|++.+.+..|++++++++++++..+++.+ .|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~~-------- 149 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTLA-------- 149 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEEc--------
Confidence 000 000111223345667778877666899999999999998766643 34332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||+||.|+|..+.
T Consensus 150 ------~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 150 ------NGRRLTARLLVAADSRFSA 168 (392)
T ss_pred ------CCCEEEeCEEEEeCCCCch
Confidence 1257999999999996554
No 72
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.46 E-value=2.6e-12 Score=120.45 Aligned_cols=133 Identities=14% Similarity=0.283 Sum_probs=87.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc---
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--- 158 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~--- 158 (321)
+||+|||||++|+++|+.|++. |++|+|+|+.+......... ...........+.|+++|+ ++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~---~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFKD---IRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIY 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCcC---ceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEE
Confidence 6999999999999999999999 99999999874321110000 0011122223334444333 110
Q ss_pred ---cC------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCC
Q 020815 159 ---EQ------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 223 (321)
Q Consensus 159 ---~~------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~ 223 (321)
.. ..+.+..+...+.+.|++++.+..+++++.+++++++..+++.+. +...
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------------- 143 (374)
T PRK06617 78 VVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFD------------- 143 (374)
T ss_pred EEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEc-------------
Confidence 00 112334566888899999988666799999999999988776543 3331
Q ss_pred CCceEEEcCeEEEcCCCCCC
Q 020815 224 MDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 224 g~~~~i~a~~VI~AtG~~~~ 243 (321)
+ .+++||.||.|+|.+|.
T Consensus 144 -~-~~~~adlvIgADG~~S~ 161 (374)
T PRK06617 144 -D-KQIKCNLLIICDGANSK 161 (374)
T ss_pred -C-CEEeeCEEEEeCCCCch
Confidence 1 37999999999995553
No 73
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.46 E-value=5.6e-14 Score=133.89 Aligned_cols=135 Identities=28% Similarity=0.415 Sum_probs=38.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhh------hccchHHHHHHHcCC----CcccCC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM------VVRKPAHIFLDELGI----DYDEQD 161 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~------~~~~~~~~~l~~~g~----~~~~~~ 161 (321)
||||||||++|++||+.+++. |++|+|||+...+||....++...... ....-..++++.+.. +.....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999 999999999999988755444321111 111111223332221 001000
Q ss_pred CeE--EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 162 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 162 ~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
.+. ...+...+... ++++..+.|+++++++.+.+++.++++|.+|.+.+ ..| ..+++||.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~-l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~----------~~g-~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 80 GWVSNVPFDPEVFKAV-LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET----------KSG-RKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc----------ccc-cccccccccccccc
Confidence 110 11222333333 44444578999999999999999999999998853 112 47899999999999
No 74
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.45 E-value=2.7e-12 Score=120.81 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=85.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcc-cchhhhccchHHHHHHHcCCC----------cc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ-LFSAMVVRKPAHIFLDELGID----------YD 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~-~~~~~~~~~~~~~~l~~~g~~----------~~ 158 (321)
.+||+|||||++|+++|+.|++. |++|+|||+.+...- ...+. -...........+.|+++|+. +.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~~--~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKAF--EPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCcccC--CCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 48999999999999999999999 999999998742100 00000 000011223344445554431 00
Q ss_pred ------c-------------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 159 ------E-------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 159 ------~-------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
. ...+........+...|++++.+..+++++.+++++++..+++.+. +.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~--------- 149 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLE--------- 149 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEEC---------
Confidence 0 0011111222456667777776667899999999999988776543 3332
Q ss_pred CCCCCCceEEEcCeEEEcCCCCCC
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||.||.|+|..+.
T Consensus 150 -----~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 150 -----SGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred -----CCCEEEeeEEEEecCCCch
Confidence 2268999999999995543
No 75
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.45 E-value=2.6e-12 Score=122.03 Aligned_cols=136 Identities=18% Similarity=0.306 Sum_probs=85.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Cc---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY--- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~--- 157 (321)
++||+|||||++|+++|+.|++. |++|+|||+.+....... +.. ........+.|+++|+ ++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~-g~~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 91 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAAK-GQA----YALSLLSARIFEGIGVWEKILPQIGKFRQI 91 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCCC-CcE----EEechHHHHHHHHCChhhhhHhhcCCccEE
Confidence 58999999999999999999999 999999999875421100 000 0111112223333222 11
Q ss_pred -------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815 158 -------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 158 -------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~ 220 (321)
... ..+........+.+.|++++.+..+++++++++++++..+++.+. |.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~--------- 161 (415)
T PRK07364 92 RLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI--------- 161 (415)
T ss_pred EEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc---------
Confidence 000 011111222457777888877556899999999999987766543 33321
Q ss_pred CCCCCceEEEcCeEEEcCCCCCC
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+++..+++||+||.|+|.++.
T Consensus 162 --~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 162 --EGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred --CCcceEEeeeEEEEeCCCCch
Confidence 012357999999999996654
No 76
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.45 E-value=2.4e-12 Score=127.20 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCCC
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP 243 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~~ 243 (321)
+...|.+.+. +.|++++++++|++|+.++++|.||.+... +...+++| |.||+|+|+++.
T Consensus 219 l~~~L~~~a~-~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~-----------~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 219 LVARLLKSAE-DLGVRIWESAPARELLREDGRVAGAVVETP-----------GGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEEEC-----------CcEEEEEeCCEEEEcCCCccc
Confidence 4456666665 679999999999999988899999887420 12257899 999999999874
No 77
>PRK06126 hypothetical protein; Provisional
Probab=99.44 E-value=3.4e-12 Score=125.51 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=84.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHH---------HcCCCccc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD---------ELGIDYDE 159 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~---------~~g~~~~~ 159 (321)
.++||+|||||++|+++|+.|++. |++|+||||.+.+... ..+ ........+.|+ +.+.+...
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~--~ra-----~~l~~r~~e~L~~lGl~~~l~~~g~~~~~ 77 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFN--PKA-----NTTSARSMEHFRRLGIADEVRSAGLPVDY 77 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCC--Ccc-----ccCCHHHHHHHHhcChHHHHHhhcCCccc
Confidence 368999999999999999999999 9999999997643211 000 011111122222 22211100
Q ss_pred ----------CC-------------C---------------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC
Q 020815 160 ----------QD-------------N---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (321)
Q Consensus 160 ----------~~-------------~---------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 201 (321)
.+ . .........+...|++.+.+..+++++++++++++..++
T Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~ 157 (545)
T PRK06126 78 PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA 157 (545)
T ss_pred cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC
Confidence 00 0 001123344666777777656799999999999998887
Q ss_pred CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.+... +.+ . .+++..++++|+||.|+|.++
T Consensus 158 ~~v~v~-~~~------~---~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 158 DGVTAT-VED------L---DGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CeEEEE-EEE------C---CCCcEEEEEEEEEEecCCcch
Confidence 766532 221 0 112346899999999999554
No 78
>PRK12839 hypothetical protein; Provisional
Probab=99.44 E-value=2.5e-12 Score=126.50 Aligned_cols=41 Identities=34% Similarity=0.581 Sum_probs=37.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.++||||||+|.+|+++|+.|++. |.+|+||||...+||.+
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCccc
Confidence 378999999999999999999999 99999999998777765
No 79
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.44 E-value=3.8e-12 Score=119.76 Aligned_cols=132 Identities=25% Similarity=0.396 Sum_probs=87.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCcccchhhhccchHHHHHHHcCCCcc---------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGIDYD--------- 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg--~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~--------- 158 (321)
.+||+|||||++|+++|+.|++. |++|+|+|+...+.. ..|. ...........+.|+.+|+.-.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~----~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~ 79 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWD----SRVYAISPSSQAFLERLGVWQALDAARLAPV 79 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCC----CceEeecHHHHHHHHHcCchhhhhhhcCCcc
Confidence 58999999999999999999999 999999999876432 1111 1111222333444444443110
Q ss_pred -------cC-------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 -------EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 -------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
.. +......+...+.+.|.+++.+..+++++ +++++++..+++.+. +.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~------- 150 (388)
T PRK07608 80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLAD------- 150 (388)
T ss_pred eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECC-------
Confidence 00 01112334567888888888754459999 889999887666543 44421
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.+++||.||.|+|..+
T Consensus 151 -------g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 151 -------GQVLRADLVVGADGAHS 167 (388)
T ss_pred -------CCEEEeeEEEEeCCCCc
Confidence 25799999999999665
No 80
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.44 E-value=4.2e-12 Score=121.51 Aligned_cols=146 Identities=18% Similarity=0.355 Sum_probs=88.5
Q ss_pred ccEEEECCChHHHHHHHHhhc----CCCCeEEEEeccCCCCCcc--c--cCcc-cchhhhccchHHHHHHHcCCC-----
Q 020815 91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGA--W--LGGQ-LFSAMVVRKPAHIFLDELGID----- 156 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~liEk~~~~gg~~--~--~~g~-~~~~~~~~~~~~~~l~~~g~~----- 156 (321)
|||+|||||++|+++|+.|++ . |++|+|||+.+.+.-.. + ..+. ............+.|+.+|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence 699999999999999999999 7 99999999954222100 0 0000 001112223334444444431
Q ss_pred ---------------------cccC---CCeEEEecHHHHHHHHHHHHHcCC--CcEEEcCceEEEEEEE------CCEE
Q 020815 157 ---------------------YDEQ---DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK------GGRV 204 (321)
Q Consensus 157 ---------------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~------~~~v 204 (321)
|+.. ..+....+...+.+.|++++.+.. +++++++++++++..+ ++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 1100 111223455677788888887555 6999999999999753 1222
Q ss_pred EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256 (321)
Q Consensus 205 ~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g 256 (321)
..|... ++.+++||+||.|+|.+ |.+|+..++.
T Consensus 160 v~v~~~--------------~g~~i~a~llVgADG~~-----S~vR~~~gi~ 192 (437)
T TIGR01989 160 VHITLS--------------DGQVLYTKLLIGADGSN-----SNVRKAANID 192 (437)
T ss_pred eEEEEc--------------CCCEEEeeEEEEecCCC-----ChhHHHcCCC
Confidence 223332 23689999999999955 4455544443
No 81
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.43 E-value=4.8e-12 Score=119.88 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=85.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-ccchhhhccchHHHHHHHcCCC------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDELGID------------ 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-~~~~~~~~~~~~~~~l~~~g~~------------ 156 (321)
.+||+|||||++|+++|+.|++. |++|+|||+.+.......... .............+.|+++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 48999999999999999999999 999999999863211000000 0001111223334444444431
Q ss_pred --------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
|... ..+....+...+.+.|++.+. +.+++++++++++++..+++.+. |.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~-------- 150 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLA-------- 150 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence 0000 011122344567778887776 56999999999999987766543 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||.||.|+|.++.
T Consensus 151 ------~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 151 ------DGRQLRAPLVVAADGANSA 169 (405)
T ss_pred ------CCCEEEeCEEEEecCCCch
Confidence 2257999999999996553
No 82
>PRK07045 putative monooxygenase; Reviewed
Probab=99.43 E-value=4.6e-12 Score=119.30 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=84.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC---CccccCcccchhhhccchHHHHHHHcCC-----------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG---GGAWLGGQLFSAMVVRKPAHIFLDELGI----------- 155 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g---g~~~~~g~~~~~~~~~~~~~~~l~~~g~----------- 155 (321)
.+||+|||||++|+++|+.|++. |++|+|+|+.+.+. +... ......+.|+++|+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~----------l~~~~~~~L~~lGl~~~~~~~~~~~ 73 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQNGADL----------LKPSGIGVVRAMGLLDDVFAAGGLR 73 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCCCcccc----------cCccHHHHHHHcCCHHHHHhccccc
Confidence 58999999999999999999999 99999999987542 1110 01111111111111
Q ss_pred ----------------CcccC--CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-EEEEEEeecceec
Q 020815 156 ----------------DYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSM 216 (321)
Q Consensus 156 ----------------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-v~gv~~~~~~~~~ 216 (321)
++... ..+....+...+.+.|++++.+..|++++++++++++..+++. +..|...+
T Consensus 74 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~----- 148 (388)
T PRK07045 74 RDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD----- 148 (388)
T ss_pred ccceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-----
Confidence 01000 1122223445677888888766789999999999999876543 34455422
Q ss_pred ccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 217 NHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 217 ~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.++++|+||.|+|..+
T Consensus 149 ---------g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 149 ---------GERVAPTVLVGADGARS 165 (388)
T ss_pred ---------CCEEECCEEEECCCCCh
Confidence 25799999999999554
No 83
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.43 E-value=3.3e-12 Score=118.27 Aligned_cols=133 Identities=26% Similarity=0.372 Sum_probs=85.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEE-eccCCCCCccccC--cccchhhh------ccchHHHHHHHcCCCcccC--
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAII-EQSVSPGGGAWLG--GQLFSAMV------VRKPAHIFLDELGIDYDEQ-- 160 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~li-Ek~~~~gg~~~~~--g~~~~~~~------~~~~~~~~l~~~g~~~~~~-- 160 (321)
||+|||||.||+.||+++++. |.+|+|+ ++.+.++.-..+. +......+ ......+..+..++.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~ 79 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR 79 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence 899999999999999999999 9999999 4444443311110 00100000 0112223344444433321
Q ss_pred ------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815 161 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (321)
Q Consensus 161 ------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V 234 (321)
.......+...|...+.+.+.+.+|++++.. +|++|..++++|.||.+.+ +..+.||.|
T Consensus 80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~--------------g~~~~a~~v 144 (392)
T PF01134_consen 80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKD--------------GEEIEADAV 144 (392)
T ss_dssp TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETT--------------SEEEEECEE
T ss_pred cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCC--------------CCEEecCEE
Confidence 1122345667888888888887799999865 8999999999999999853 378999999
Q ss_pred EEcCCC
Q 020815 235 VSSCGH 240 (321)
Q Consensus 235 I~AtG~ 240 (321)
|+|||-
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999997
No 84
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.43 E-value=4.3e-12 Score=124.51 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=91.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchh---------------------------h--
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---------------------------M-- 140 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~---------------------------~-- 140 (321)
+|||+|||||+.|+++|+.|+++ |++|+|||++....|+++....+... .
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 58999999999999999999999 99999999986554444322111000 0
Q ss_pred -------h-ccch-------HHHHHHHcCCCcccC-------------CC----eEE---EecHHHHHHHHHHHHHcCCC
Q 020815 141 -------V-VRKP-------AHIFLDELGIDYDEQ-------------DN----YVV---IKHAALFTSTIMSKLLARPN 185 (321)
Q Consensus 141 -------~-~~~~-------~~~~l~~~g~~~~~~-------------~~----~~~---~~~~~~~~~~l~~~~~~~~g 185 (321)
+ .... ..+++...|++.... .. +.. ..+...+...+...+. +.|
T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~G 163 (546)
T PRK11101 85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EHG 163 (546)
T ss_pred cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hCC
Confidence 0 0000 011223334331110 00 000 2244566666666665 679
Q ss_pred cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 186 v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++++++++|+++..+++++.+|.+.+. .+++..+|+|+.||+|+|.++
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d~---------~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRDH---------LTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEEc---------CCCcEEEEECCEEEECCChhH
Confidence 999999999999988889998887431 112336899999999999654
No 85
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.42 E-value=4.4e-12 Score=118.72 Aligned_cols=139 Identities=23% Similarity=0.325 Sum_probs=91.7
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-------ccCcccchh------hhcc--chHHHHHHHc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-------WLGGQLFSA------MVVR--KPAHIFLDEL 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~-------~~~g~~~~~------~~~~--~~~~~~l~~~ 153 (321)
+|||+|||||+.|+++|++|+++ |.++|+||||...++... .+.|..+.. +... ....++.+++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997 239999999988765221 111111111 1000 0123455556
Q ss_pred CCCcccCCCeEE------------------------------------------------------EecHHHHHHHHHHH
Q 020815 154 GIDYDEQDNYVV------------------------------------------------------IKHAALFTSTIMSK 179 (321)
Q Consensus 154 g~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~ 179 (321)
+++|...+.+.+ ..+...+...|.+.
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 655544322111 22346677888888
Q ss_pred HHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 180 ~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+. ..|++++++++|++|..+++.++.+.+.. |+.. ++||.||.|.|+++
T Consensus 163 a~-~~g~~i~ln~eV~~i~~~~dg~~~~~~~~------------g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 163 AQ-ANGVELRLNTEVTGIEKQSDGVFVLNTSN------------GEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HH-HcCCEEEecCeeeEEEEeCCceEEEEecC------------CcEE-EEeeEEEECCchhH
Confidence 87 45999999999999998776544444432 1223 99999999999665
No 86
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.42 E-value=6.7e-12 Score=118.29 Aligned_cols=135 Identities=20% Similarity=0.319 Sum_probs=85.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCccc--chhhhccchHHHHHHHcCCC----------c
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL--FSAMVVRKPAHIFLDELGID----------Y 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~--~~~~~~~~~~~~~l~~~g~~----------~ 157 (321)
+|||+|||||++|+++|+.|++. |++|+|||+..... +..+.. ...........+.|+.+|+. +
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAP---FDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCc---ccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 68999999999999999999999 99999999975321 000000 00011112223333333321 0
Q ss_pred ---------------ccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 158 ---------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 158 ---------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
+.. ..+....+...+.+.|++++.+.+|++++.+++++++..+++.+ .|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~-------- 151 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLA-------- 151 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEEC--------
Confidence 000 11112345567778888888755699999999999998766643 23332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||.||.|+|..+.
T Consensus 152 ------~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 152 ------DGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred ------CCCEEEeCEEEEeCCCCch
Confidence 1257999999999996554
No 87
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.42 E-value=3.5e-12 Score=125.94 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc-CeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a-~~VI~AtG~~~~ 243 (321)
.+...|+++++ +.|++++.++.+++|+.++++|.||.+.. ++...++.| +.||+|||+++.
T Consensus 222 ~l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~-----------~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 222 ALIGRLLYSLR-ARGVRILTQTDVESLETDHGRVIGATVVQ-----------GGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCEEEEEEEec-----------CCeEEEEEccceEEECCCCccc
Confidence 45566777776 68999999999999998889999998742 113356886 789999999875
No 88
>PRK06834 hypothetical protein; Provisional
Probab=99.42 E-value=4.5e-12 Score=122.71 Aligned_cols=131 Identities=20% Similarity=0.236 Sum_probs=83.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------C----
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D---- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~---- 156 (321)
++||+|||||++|+++|+.|++. |++|+|||+...+......... ......+.|+++|+ .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~Ra~~------l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGSRAGG------LHARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCcceee------ECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 58999999999999999999999 9999999998643210000111 11122222222222 0
Q ss_pred --------cccC---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 157 --------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 157 --------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
+... ..+........+.+.|.+.+. +.|++++++++++++..+++.+. +... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~--------------~ 139 (488)
T PRK06834 76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELS--------------D 139 (488)
T ss_pred eeeeEecccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEEC--------------C
Confidence 0000 011122234556666666665 56999999999999988777543 2221 1
Q ss_pred ceEEEcCeEEEcCCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~ 243 (321)
+.+++||+||.|+|..+.
T Consensus 140 g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 140 GRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CCEEEeCEEEEecCCCCC
Confidence 257999999999996654
No 89
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.42 E-value=4.4e-12 Score=124.46 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=86.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------- 156 (321)
++||+|||||++|+++|+.|++. |++|+||||...+..... + ........+.|+++|+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~r--a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLPR--A-----VGIDDEALRVLQAIGLADEVLPHTTPNHGM 81 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCc--e-----eeeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence 68999999999999999999999 999999999875432110 0 11112223333333321
Q ss_pred -cc-cCC--------------CeE--EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 157 -YD-EQD--------------NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 157 -~~-~~~--------------~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
|. ..+ .+. ...+...+.+.|.+.+.+..|++++++++++++..+++.+. +....
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~------- 153 (538)
T PRK06183 82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTD------- 153 (538)
T ss_pred EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEc-------
Confidence 10 000 010 12233456667777776557999999999999998877654 22221
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.+|+..+++||+||.|+|.++
T Consensus 154 ---~~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 154 ---ADGQRETVRARYVVGCDGANS 174 (538)
T ss_pred ---CCCCEEEEEEEEEEecCCCch
Confidence 122346899999999999544
No 90
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.41 E-value=9.5e-12 Score=117.13 Aligned_cols=129 Identities=24% Similarity=0.366 Sum_probs=84.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------c---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y--- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~--- 157 (321)
.+||+|||||++|+++|+.|++. |++|+|||+.+.+... . ... ......+.|+++|+. +
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~-r-~~~------l~~~s~~~l~~lgl~~~~~~~~~~~~~~ 77 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADL-R-TTA------LLGPSIRFLERLGLWARLAPHAAPLQSM 77 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCc-c-hhh------CcHHHHHHHHHhCchhhhHhhcceeeEE
Confidence 68999999999999999999999 9999999998654211 0 000 111122333333321 0
Q ss_pred ---ccC------------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815 158 ---DEQ------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 216 (321)
Q Consensus 158 ---~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~ 216 (321)
+.. ..+.+..+...+.+.|++++.+..++. +++++|+++..+++.+. +.+.
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~------ 149 (388)
T PRK07494 78 RIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLA------ 149 (388)
T ss_pred EEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEEC------
Confidence 000 111223445677788888887555677 77899999987776554 3332
Q ss_pred ccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 217 NHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+++||.||.|+|..+.
T Consensus 150 --------~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 150 --------DGTTLSARLVVGADGRNSP 168 (388)
T ss_pred --------CCCEEEEeEEEEecCCCch
Confidence 1257999999999996553
No 91
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.41 E-value=8.9e-12 Score=118.08 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=86.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhccchHHHHHHHcCCCcc----------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD---------- 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~---------- 158 (321)
.+||+|||||++|+++|+.|++. |++|+|||+. +...-... . ............+.|+++|+.-.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~-~--~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 79 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNEL-P--DVRVSALSRSSEHILRNLGAWQGIEARRAAPYI 79 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCC-C--CcceecccHHHHHHHHhCCchhhhhhhhCCccc
Confidence 58999999999999999999999 9999999996 22110000 0 00011122344455555554100
Q ss_pred ------cC--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 ------EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 ------~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
.. ..+....+...+.+.|++++.+..+++++.+++++++..+++.+. |...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~-------- 150 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLD-------- 150 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEEC--------
Confidence 00 001112234566678888887667899999999999987766443 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.+++||+||.|+|..+
T Consensus 151 ------~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 151 ------NGQALTAKLVVGADGANS 168 (405)
T ss_pred ------CCCEEEeCEEEEeCCCCC
Confidence 225799999999999554
No 92
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.41 E-value=1.1e-12 Score=124.66 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=90.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHH----HcCCCcccC-CC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLD----ELGIDYDEQ-DN 162 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~----~~g~~~~~~-~~ 162 (321)
.+||+||||+|++|..+|++|++. |++|+|+|+....||+|.+-||++++.+.+... .+.+. .+|+..... -+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 369999999999999999999999 999999999878999999999999998877643 24444 355544332 11
Q ss_pred eEEEe-cHH---HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 163 YVVIK-HAA---LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 163 ~~~~~-~~~---~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
+..+. ... .....-.+.+.+.++++++.++. -..+++.+ .+.. . +..+++++.+|+||
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a---~f~~~~~v---~V~~-------~-----~~~~~~a~~iiIAT 143 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA---RFVDPHTV---EVTG-------E-----DKETITADNIIIAT 143 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE---EECCCCEE---EEcC-------C-----CceEEEeCEEEEcC
Confidence 11111 111 11222234455567999988731 12233432 2211 0 23789999999999
Q ss_pred CCCCC
Q 020815 239 GHDGP 243 (321)
Q Consensus 239 G~~~~ 243 (321)
|....
T Consensus 144 GS~p~ 148 (454)
T COG1249 144 GSRPR 148 (454)
T ss_pred CCCCc
Confidence 96653
No 93
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.41 E-value=2.9e-12 Score=115.31 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=50.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~ 144 (321)
+|||+|||+||+|..||+.+++. |++++.||++...||+|.+.||++++.+.+.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGcIPSKALL~n 92 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGCIPSKALLNN 92 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccccccHHHhhh
Confidence 79999999999999999999999 9999999999999999999999988766554
No 94
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.40 E-value=1.6e-12 Score=125.40 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=87.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~~~~-~~~~ 164 (321)
+|||+|||||++|+.+|..|++. |++|+|||+.+..||.|++.||++.+.+.... ..+.+..+|+.+... -++.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 69999999999999999999999 99999999987899999999999988765532 123445566654321 0111
Q ss_pred EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
.. .....+.+.+ ++.+.+..|++++.++ +.- .+.+.+ .|... +++..++++|+||+|||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~--~~~~~v-~v~~~------------~g~~~~~~~d~lViATGs 146 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKF--TGGNTL-EVTGE------------DGKTTVIEFDNAIIAAGS 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecC------------CCceEEEEcCEEEEeCCC
Confidence 00 0111111111 2233446799999874 222 233332 22221 112357999999999997
Q ss_pred CC
Q 020815 241 DG 242 (321)
Q Consensus 241 ~~ 242 (321)
..
T Consensus 147 ~p 148 (471)
T PRK06467 147 RP 148 (471)
T ss_pred CC
Confidence 54
No 95
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.40 E-value=1.6e-11 Score=120.73 Aligned_cols=135 Identities=23% Similarity=0.330 Sum_probs=85.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------cc-
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD- 158 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~- 158 (321)
.++||+|||||++|+++|+.|++. |++|+||||.+......- .........+.|+++|+. +.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~~r-------a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 93 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTGSR-------AICFAKRSLEIFDRLGCGERMVDKGVSWNV 93 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCe-------EEEEcHHHHHHHHHcCCcHHHHhhCceeec
Confidence 468999999999999999999999 999999999875432110 011112223333333321 10
Q ss_pred -----c---------C--C--C--eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 -----E---------Q--D--N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 -----~---------~--~--~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
. . . . .....+...+.+.|.+.+.+..+++++++++++++..+++.+.. .... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v-~~~~------~ 166 (547)
T PRK08132 94 GKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTL-TVET------P 166 (547)
T ss_pred eeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEE-EEEC------C
Confidence 0 0 0 0 01123445566777787775668999999999999887765432 2211 0
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+ ...+++||+||.|+|..+.
T Consensus 167 ~-----g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 167 D-----GPYTLEADWVIACDGARSP 186 (547)
T ss_pred C-----CcEEEEeCEEEECCCCCcH
Confidence 0 1247999999999995543
No 96
>PLN02546 glutathione reductase
Probab=99.40 E-value=6.2e-12 Score=123.10 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=86.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCcccchhhhccch-HHH---HHHHcCC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGI 155 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk---------~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~ 155 (321)
.+|||+|||+|++|..+|..|++. |++|+|||+ ....||+|.+.||++.+.+.... ..+ ....+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 479999999999999999999999 999999996 24679999999999999887642 222 3345666
Q ss_pred CcccC--CCeEEEe-cH----HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceE
Q 020815 156 DYDEQ--DNYVVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV 228 (321)
Q Consensus 156 ~~~~~--~~~~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (321)
.+... -+|.... +. ..+... +++..++.|++++.+ +++.+ +...+ .+. +.+
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~-~~~~l~~~gV~~i~G-~a~~v--d~~~V---~v~---------------G~~ 214 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGI-YKNILKNAGVTLIEG-RGKIV--DPHTV---DVD---------------GKL 214 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEe-EEEEc--cCCEE---EEC---------------CEE
Confidence 54211 1111111 11 122233 333344678999877 33333 22322 221 257
Q ss_pred EEcCeEEEcCCCCC
Q 020815 229 MEAKVVVSSCGHDG 242 (321)
Q Consensus 229 i~a~~VI~AtG~~~ 242 (321)
+.+|+||+|||...
T Consensus 215 ~~~D~LVIATGs~p 228 (558)
T PLN02546 215 YTARNILIAVGGRP 228 (558)
T ss_pred EECCEEEEeCCCCC
Confidence 89999999999765
No 97
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.39 E-value=9.1e-12 Score=117.76 Aligned_cols=160 Identities=19% Similarity=0.333 Sum_probs=109.1
Q ss_pred EEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc---cc------chh---hh--------------ccchHH
Q 020815 94 VVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---QL------FSA---MV--------------VRKPAH 147 (321)
Q Consensus 94 vIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g---~~------~~~---~~--------------~~~~~~ 147 (321)
+|||||++|++||+.|++. |++|+|+||+..+|+.....| +. ... .. ......
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 6999999999999999999 999999999987775432111 00 000 00 011345
Q ss_pred HHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC
Q 020815 148 IFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (321)
Q Consensus 148 ~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (321)
+|++++|+++..... ++.......+.+.|.+.+. +.|++++.++.|+++..+++. ..+.+.
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~-~~v~~~-------------- 143 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNG-FGVETS-------------- 143 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCe-EEEEEC--------------
Confidence 678888887765422 1223345778888888876 679999999999999765553 334431
Q ss_pred CceEEEcCeEEEcCCCCCCC--cc--hhhhhhhhcCC--cccccCCceeeccc
Q 020815 225 DPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM--IEEVPGMKALDMNS 271 (321)
Q Consensus 225 ~~~~i~a~~VI~AtG~~~~~--~~--~~~~~~~~~g~--~~~~~~~~~~~~~~ 271 (321)
..++.+|.||+|+|+.+.. +. ++++.+..+|+ .++.|...++....
T Consensus 144 -~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~ 195 (400)
T TIGR00275 144 -GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDE 195 (400)
T ss_pred -CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCC
Confidence 1568999999999986632 22 45677777777 56777777776544
No 98
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.39 E-value=1.6e-11 Score=116.12 Aligned_cols=131 Identities=18% Similarity=0.328 Sum_probs=84.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~------------- 156 (321)
|||+|||||++|+++|+.|++.+ |++|+|||+.+.........+ ........+.|+++|+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA-----SAIAAAARRMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcce-----EEecHHHHHHHHHCCChhhhhhhcCcccEE
Confidence 79999999999999999999982 499999999864211000000 01111222333333320
Q ss_pred -----------------ccc----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeeccee
Q 020815 157 -----------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 215 (321)
Q Consensus 157 -----------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~ 215 (321)
+.. ...+....+...+.+.|++.+. +.|++++++++|+++..+++.+. +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~----- 149 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLS----- 149 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEEC-----
Confidence 000 0112223456778888888886 56999999999999987776543 3332
Q ss_pred cccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 216 MNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 216 ~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.+++||+||.|+|..+
T Consensus 150 ---------~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 150 ---------DGSVLEARLLVAADGARS 167 (403)
T ss_pred ---------CCCEEEeCEEEEcCCCCh
Confidence 225799999999999554
No 99
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.39 E-value=2.6e-12 Score=123.92 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=85.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HH-----HHHHcCCCcccCCCe
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI-----FLDELGIDYDEQDNY 163 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~-----~l~~~g~~~~~~~~~ 163 (321)
+|||+|||+||+|+.||+.|++. |++|+|||+...+||.|.+.||++.+.+..... .+ .+..+|+......++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 59999999999999999999999 999999998778999999999999887765422 11 133456543211111
Q ss_pred EEE-ecHHHHHH---HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 164 VVI-KHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 164 ~~~-~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
... ........ .-.+...+..+++++.+. + .+ .+++++. |... +++..++++|+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~-~~~~~v~-v~~~------------~g~~~~~~~d~lVIATG 145 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RL-DGVGKVV-VKAE------------DGSETQLEAKDIVIATG 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EE-ccCCEEE-EEcC------------CCceEEEEeCEEEEeCC
Confidence 100 00111111 112333445688888774 2 22 2233332 2221 11235799999999999
Q ss_pred CCC
Q 020815 240 HDG 242 (321)
Q Consensus 240 ~~~ 242 (321)
...
T Consensus 146 s~p 148 (466)
T PRK06115 146 SEP 148 (466)
T ss_pred CCC
Confidence 765
No 100
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.39 E-value=5.8e-12 Score=120.39 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=94.8
Q ss_pred EECCChHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCccc--------------------chhhh-----------
Q 020815 95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV----------- 141 (321)
Q Consensus 95 IIGgG~aGl~aA~~La~~~G~~V~liEk~~~--~gg~~~~~g~~--------------------~~~~~----------- 141 (321)
|||+|.+|++||++|++. |.+|+||||.+. .||+++..... +..+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999 999999999874 35554322110 00000
Q ss_pred c------cchHHHHHHHcCCCcccCC--Ce-------EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEE
Q 020815 142 V------RKPAHIFLDELGIDYDEQD--NY-------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRV 204 (321)
Q Consensus 142 ~------~~~~~~~l~~~g~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v 204 (321)
. ....++||+++|++|.... .+ ........+...|.+.++ +.|++++++++|++|+.+ ++++
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v 158 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH 158 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence 0 1134688899998875431 11 111234567788888776 689999999999999887 5788
Q ss_pred EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 205 ~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++|.... +..+++||.||+|+|+++.
T Consensus 159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 159 DGPLTTV-------------GTHRITTQALVLAAGGLGA 184 (432)
T ss_pred EEEEEcC-------------CcEEEEcCEEEEcCCCccc
Confidence 8887631 1257999999999998764
No 101
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=9.3e-12 Score=122.42 Aligned_cols=41 Identities=32% Similarity=0.595 Sum_probs=37.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.++||||||+|++|+++|+.|++. |++|+||||....||++
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCccc
Confidence 379999999999999999999999 99999999988777654
No 102
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.39 E-value=1e-11 Score=117.21 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=85.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC--CCccccCcccchhhhccchHHHHHHHcCCC---------cc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--GGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~--gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~ 158 (321)
.+||+|||||++|+++|+.|++. |++|+|+|+.+.. .+.. .. ........+.|+++|+. ..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~-~a------~~l~~~~~~~l~~lGl~~~l~~~~~~~~ 73 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVEGRI-RA------GVLEQGTVDLLREAGVGERMDREGLVHD 73 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCcccccccc-ce------eEECHhHHHHHHHcCChHHHHhcCCccC
Confidence 47999999999999999999999 9999999998642 1100 00 11222334455555441 00
Q ss_pred -----cCC-------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815 159 -----EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 159 -----~~~-------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~ 220 (321)
..+ ......+...+.+.|++.+. ..|++++++++++++...++....|...
T Consensus 74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~~V~~~---------- 142 (392)
T PRK08243 74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRPYVTYE---------- 142 (392)
T ss_pred cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCceEEEEE----------
Confidence 000 01112234566677777765 5799999999999987523323334331
Q ss_pred CCCCCceEEEcCeEEEcCCCCCCC
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
.+|+..+++||+||.|+|..|..
T Consensus 143 -~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 143 -KDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred -cCCeEEEEEeCEEEECCCCCCch
Confidence 11234689999999999977644
No 103
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.38 E-value=1.6e-11 Score=115.23 Aligned_cols=132 Identities=24% Similarity=0.366 Sum_probs=84.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------cc---
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD--- 158 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~--- 158 (321)
||+|||||++|+++|+.|++. | ++|+|+|+...+.-.. + .............+.++++|+. ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~~--~-~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQP--G-FDARSLALSYGSKQILEKLGLWPKLAPFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccCC--C-CCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence 799999999999999999999 9 9999999986542210 0 0000001111122333333321 00
Q ss_pred --cC---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815 159 --EQ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 221 (321)
Q Consensus 159 --~~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~ 221 (321)
.. ....+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~----------- 144 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLD----------- 144 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEEC-----------
Confidence 00 001122345678888888887446999999999999987766543 3332
Q ss_pred CCCCceEEEcCeEEEcCCCCC
Q 020815 222 SCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 222 ~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.+++||.||.|+|..+
T Consensus 145 ---~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 145 ---NGQQLRAKLLIAADGANS 162 (382)
T ss_pred ---CCCEEEeeEEEEecCCCh
Confidence 125799999999999554
No 104
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.38 E-value=1.6e-11 Score=115.20 Aligned_cols=132 Identities=21% Similarity=0.398 Sum_probs=85.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCcccchhhhccchHHHHHHHcCCC-------------
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~--~~~g~~~~~~~~~~~~~~~l~~~g~~------------- 156 (321)
||+|||||++|+++|+.|++. |++|+|+||.+.++-.. +.+.. ........+.|+++|+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 75 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAATPGFDNRV----SALSAASIRLLEKLGVWDKIEPDRAQPIRD 75 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCCCCCCcce----eecCHHHHHHHHHCCchhhhhhhcCCCceE
Confidence 799999999999999999999 99999999997653110 00000 01111222233333321
Q ss_pred -------------cccC----CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
+... ..+....+...+.+.|++.+.+..+++++.+++|+++..+++.+. +...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~--------- 145 (385)
T TIGR01988 76 IHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLD--------- 145 (385)
T ss_pred EEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEEC---------
Confidence 0000 011223445678888888887544499999999999987776543 3332
Q ss_pred CCCCCCceEEEcCeEEEcCCCCCC
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.++++|.||.|+|..+.
T Consensus 146 -----~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 146 -----DGQQLRARLLVGADGANSK 164 (385)
T ss_pred -----CCCEEEeeEEEEeCCCCCH
Confidence 1257999999999996653
No 105
>PTZ00058 glutathione reductase; Provisional
Probab=99.38 E-value=4.5e-12 Score=124.06 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=69.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCcccCCCeEE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQDNYVV 165 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~ 165 (321)
+|||+|||||++|+.||+.|++. |++|+|||+. .+||+|.+.||++.+.+..... .+....+|+......++..
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 69999999999999999999999 9999999996 7999999999999988766422 2233456664221111111
Q ss_pred -EecHHHHHHH---HHHHHHcCCCcEEEcCc
Q 020815 166 -IKHAALFTST---IMSKLLARPNVKLFNAV 192 (321)
Q Consensus 166 -~~~~~~~~~~---l~~~~~~~~gv~i~~~~ 192 (321)
..+...+... .++...++.|++++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~ 156 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGK 156 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE
Confidence 1112222222 22333346799999885
No 106
>PRK14694 putative mercuric reductase; Provisional
Probab=99.37 E-value=3.8e-12 Score=122.83 Aligned_cols=137 Identities=14% Similarity=0.181 Sum_probs=84.9
Q ss_pred CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHHH----cCCCccc-CC
Q 020815 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE----LGIDYDE-QD 161 (321)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~~----~g~~~~~-~~ 161 (321)
..+|||+|||||++|+++|+.|++. |++|+|||+. .+||+|++.||++.+.+.+... .+..++ .|+.... ..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 3579999999999999999999999 9999999996 6899999999998887765432 222332 2332111 10
Q ss_pred CeEE-EecHHHHHHHH----HHH-HHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEE
Q 020815 162 NYVV-IKHAALFTSTI----MSK-LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV 235 (321)
Q Consensus 162 ~~~~-~~~~~~~~~~l----~~~-~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI 235 (321)
++.. ..........+ .+. +.+..+++++.+ +++.+ +.+. ..|.+.+ ++..++++|+||
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~i--d~~~-~~V~~~~------------g~~~~~~~d~lV 145 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFV--DERT-LTVTLND------------GGEQTVHFDRAF 145 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEe--cCCE-EEEEecC------------CCeEEEECCEEE
Confidence 1100 01111122221 112 222347888887 45555 3332 2233321 123579999999
Q ss_pred EcCCCCC
Q 020815 236 SSCGHDG 242 (321)
Q Consensus 236 ~AtG~~~ 242 (321)
+|||...
T Consensus 146 iATGs~p 152 (468)
T PRK14694 146 IGTGARP 152 (468)
T ss_pred EeCCCCC
Confidence 9999765
No 107
>PLN02507 glutathione reductase
Probab=99.37 E-value=6.4e-12 Score=121.95 Aligned_cols=137 Identities=21% Similarity=0.238 Sum_probs=87.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCcccchhhhccchH----HHHHHHcCC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGI 155 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk---------~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~ 155 (321)
.+|||+|||+|++|+.+|..|++. |++|+|||+ ...+||.|++.||++.+.+..... .+...++|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 379999999999999999999999 999999996 246899999999999888766432 234455666
Q ss_pred CcccCCC--eEE-EecHHHHH---HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815 156 DYDEQDN--YVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 229 (321)
Q Consensus 156 ~~~~~~~--~~~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 229 (321)
....... +.. ..+..... ...++.+.+..+++++.+ ++..+ +.+.+ -|... +|+..++
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~v--d~~~v-~V~~~------------~g~~~~~ 166 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIV--GPNEV-EVTQL------------DGTKLRY 166 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEE-EEEeC------------CCcEEEE
Confidence 5421111 100 00111111 112334444678999887 44433 33322 22221 1223479
Q ss_pred EcCeEEEcCCCCC
Q 020815 230 EAKVVVSSCGHDG 242 (321)
Q Consensus 230 ~a~~VI~AtG~~~ 242 (321)
++|+||+|||...
T Consensus 167 ~~d~LIIATGs~p 179 (499)
T PLN02507 167 TAKHILIATGSRA 179 (499)
T ss_pred EcCEEEEecCCCC
Confidence 9999999999754
No 108
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.37 E-value=2e-11 Score=115.23 Aligned_cols=136 Identities=22% Similarity=0.306 Sum_probs=85.3
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCC-ccccCcccch------------hhhccc--hHHHHHHHc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG-GAWLGGQLFS------------AMVVRK--PAHIFLDEL 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg-~~~~~g~~~~------------~~~~~~--~~~~~l~~~ 153 (321)
.+||+|||||++|+++|++|++. +|.+|+||||...+++ .++.+..... .+.... ...++.+++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999984 5899999999864432 2222111100 000000 011223334
Q ss_pred CCCcccCCCeEE---------------------------------------------------EecHHHHHHHHHHHHHc
Q 020815 154 GIDYDEQDNYVV---------------------------------------------------IKHAALFTSTIMSKLLA 182 (321)
Q Consensus 154 g~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~l~~~~~~ 182 (321)
+++|...+.+.+ ..+...+.+.|.+.+.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~- 160 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ- 160 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-
Confidence 443332111111 1234566677777776
Q ss_pred CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.|++++++++|.++..+++.+ .|.+.. .+++||.||+|+|.++
T Consensus 161 ~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~---------------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 161 ARGGEIRLGAEVTALDEHANGV-VVRTTQ---------------GEYEARTLINCAGLMS 204 (393)
T ss_pred hCCCEEEcCCEEEEEEecCCeE-EEEECC---------------CEEEeCEEEECCCcch
Confidence 5799999999999998776654 344421 3799999999999664
No 109
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.36 E-value=2e-11 Score=115.09 Aligned_cols=141 Identities=18% Similarity=0.292 Sum_probs=83.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhcc----chHH-HHHHHc------CC---
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVR----KPAH-IFLDEL------GI--- 155 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~----~~~~-~~l~~~------g~--- 155 (321)
|||+||||||+|+++|+.|++. |++|+|||+. ..+. ..++.+....+.. .... ..+... +.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~---~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIK---PCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK 76 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcC---cCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee
Confidence 7999999999999999999999 9999999997 2221 0111111111000 0000 001110 00
Q ss_pred -CcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815 156 -DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (321)
Q Consensus 156 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V 234 (321)
.+.....+....+...|.+.|.+++. +.|++++.. .++++..+++.+. +....+ ..+..++..+++||+|
T Consensus 77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~------~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 77 VTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGVT-LTYRTP------KKGAGGEKGSVEADVV 147 (388)
T ss_pred eccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeEE-EEEEec------cccCCCcceEEEeCEE
Confidence 00101123334566788888888886 579999866 6888877766543 333210 0000113368999999
Q ss_pred EEcCCCCCCC
Q 020815 235 VSSCGHDGPF 244 (321)
Q Consensus 235 I~AtG~~~~~ 244 (321)
|.|+|..+.+
T Consensus 148 I~AdG~~S~v 157 (388)
T TIGR02023 148 IGADGANSPV 157 (388)
T ss_pred EECCCCCcHH
Confidence 9999966543
No 110
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.36 E-value=1.9e-11 Score=117.72 Aligned_cols=42 Identities=26% Similarity=0.568 Sum_probs=35.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~ 130 (321)
.++||+|||||++|+++|++|++. +|.+|+|||++....|.+
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaS 65 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGAS 65 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccc
Confidence 368999999999999999999985 589999999976433333
No 111
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.36 E-value=4.7e-12 Score=121.53 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=84.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-H---HHHHHcCCCcccCC--Ce
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQD--NY 163 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~---~~l~~~g~~~~~~~--~~ 163 (321)
+|||+|||||++|+.||+.|++. |++|+|||+. .+||.|.+.||++.+.+..... . +....+|++..... ++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 59999999999999999999999 9999999996 6899999999999887655421 1 22344555432111 11
Q ss_pred EEE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 164 VVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 164 ~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
... .....+.+.+ ++...++.|++++.++.+. .+++.+ .+. ..++++|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG 138 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG 138 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence 100 1111222221 2223335799999885431 233332 221 25689999999999
Q ss_pred CCC
Q 020815 240 HDG 242 (321)
Q Consensus 240 ~~~ 242 (321)
...
T Consensus 139 s~p 141 (450)
T TIGR01421 139 GKP 141 (450)
T ss_pred CCC
Confidence 764
No 112
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.35 E-value=3.5e-12 Score=122.35 Aligned_cols=131 Identities=22% Similarity=0.281 Sum_probs=85.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-H---HHHHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~---~~l~~~g~~~~~~-~~~~ 164 (321)
+|||+||||||+|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... . +....+|+..... -++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 59999999999999999999999 9999999995 7999999999999987765422 2 2233455543211 0110
Q ss_pred EE-ec----HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 165 VI-KH----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 165 ~~-~~----~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
.. .+ ...+...+.+.+ ++.|++++.+ ++..+ +.+.+. +.. +..++++|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l-~~~gV~~~~g-~~~~v--~~~~v~-v~~---------------~g~~~~~d~lIiATG 139 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLL-ANAGVELLEG-RARLV--GPNTVE-VLQ---------------DGTTYTAKKILIAVG 139 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEE-EEEEe--cCCEEE-Eec---------------CCeEEEcCEEEEecC
Confidence 00 00 112223333333 4679999877 55444 223221 111 125799999999999
Q ss_pred CCC
Q 020815 240 HDG 242 (321)
Q Consensus 240 ~~~ 242 (321)
...
T Consensus 140 s~p 142 (446)
T TIGR01424 140 GRP 142 (446)
T ss_pred CcC
Confidence 764
No 113
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.35 E-value=5.7e-12 Score=121.43 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=83.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~ 164 (321)
+|||+|||||++|++||+.|++. |++|+|||+.. .||.|++.||++.+.+.... ..+ ....+|+..... ..+.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 69999999999999999999999 99999999986 89999999999887665432 222 234455543211 0110
Q ss_pred -EEecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 165 -VIKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 165 -~~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
+......+.+.+ ++...++.|++++.++ ++.+ +...+. |.... ...++++|+||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~~~-v~~~~-------------~~~~~~~d~lViAtGs 144 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DPNTVR-VMTED-------------GEQTYTAKNIILATGS 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEE-EecCC-------------CcEEEEeCEEEEeCCC
Confidence 001111111111 2233346799998873 3322 333222 21110 1257999999999997
Q ss_pred CC
Q 020815 241 DG 242 (321)
Q Consensus 241 ~~ 242 (321)
..
T Consensus 145 ~p 146 (462)
T PRK06416 145 RP 146 (462)
T ss_pred CC
Confidence 64
No 114
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.34 E-value=4.6e-12 Score=122.43 Aligned_cols=138 Identities=15% Similarity=0.252 Sum_probs=86.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~ 164 (321)
.|||+|||||++|+.+|+.|++. |++|+|||+. .+||.|.+.||++.+.+.... ..+ ....+|+..... .++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 69999999999999999999999 9999999996 789999999999988776532 122 233455542211 0111
Q ss_pred EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEE----CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (321)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~ 236 (321)
.. .....+...+ ...+.++.|++++.+ .++.+..+ +++...|... +++..++++|+||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~------------~g~~~~~~~d~lVi 148 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETE------------TGENEMIIPENLLI 148 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeC------------CCceEEEEcCEEEE
Confidence 00 0111222222 223344679999988 44444222 0112222221 11235799999999
Q ss_pred cCCCCC
Q 020815 237 SCGHDG 242 (321)
Q Consensus 237 AtG~~~ 242 (321)
|||...
T Consensus 149 ATGs~p 154 (472)
T PRK05976 149 ATGSRP 154 (472)
T ss_pred eCCCCC
Confidence 999765
No 115
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.34 E-value=2.2e-11 Score=113.76 Aligned_cols=39 Identities=33% Similarity=0.668 Sum_probs=34.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
|||+|||||++|+++|++|++. |.+|+|||+.....|.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~~gaS 39 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRAQGAS 39 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcc
Confidence 5999999999999999999999 99999999986543433
No 116
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.34 E-value=2.5e-11 Score=114.58 Aligned_cols=132 Identities=23% Similarity=0.357 Sum_probs=86.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------c---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y--- 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~--- 157 (321)
..||+|||||++|+++|+.|++. |++|+|+||.+.++... .+ ........+.|+++|+. .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~g--~g-----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~ 75 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEIG--AG-----IQLGPNAFSALDALGVGEAARQRAVFTDHL 75 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCccccccc--ce-----eeeCchHHHHHHHcCChHHHHhhccCCcce
Confidence 47999999999999999999999 99999999987554210 00 11112223333333321 0
Q ss_pred ---cc-C-----------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceec
Q 020815 158 ---DE-Q-----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 216 (321)
Q Consensus 158 ---~~-~-----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~ 216 (321)
+. . .......+...+.+.|++.+.+..+++++++++++++..+++.+. +...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------ 148 (396)
T PRK08163 76 TMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQ------ 148 (396)
T ss_pred EEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEc------
Confidence 00 0 000123455677788888887555799999999999987666443 3332
Q ss_pred ccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 217 NHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 217 ~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.++.||.||.|+|..+..
T Consensus 149 --------~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 149 --------QGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred --------CCCEEecCEEEECCCcChHH
Confidence 22579999999999966543
No 117
>PRK07236 hypothetical protein; Provisional
Probab=99.34 E-value=2.8e-11 Score=113.91 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=82.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccC--------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-------- 160 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~-------- 160 (321)
...||+|||||++|+++|+.|++. |++|+|+||.+..... .+.. ........+.|+++|+.-...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~g~g----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~ 77 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELDG--RGAG----IVLQPELLRALAEAGVALPADIGVPSRER 77 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcCC--CCce----eEeCHHHHHHHHHcCCCcccccccCccce
Confidence 357999999999999999999999 9999999998632110 0111 112334556677766631100
Q ss_pred ------CCeE-------EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCce
Q 020815 161 ------DNYV-------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN 227 (321)
Q Consensus 161 ------~~~~-------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~ 227 (321)
+... .......+.+.|++.+ .+++++++++|+++..+++.+. +... ++.
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~ 139 (386)
T PRK07236 78 IYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDRVT-ARFA--------------DGR 139 (386)
T ss_pred EEEeCCCCEeeccCCCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCeEE-EEEC--------------CCC
Confidence 0000 0012233444444332 4678999999999988776544 3332 226
Q ss_pred EEEcCeEEEcCCCCCC
Q 020815 228 VMEAKVVVSSCGHDGP 243 (321)
Q Consensus 228 ~i~a~~VI~AtG~~~~ 243 (321)
+++||+||.|+|..+.
T Consensus 140 ~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 140 RETADLLVGADGGRST 155 (386)
T ss_pred EEEeCEEEECCCCCch
Confidence 7999999999996554
No 118
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.33 E-value=1.9e-11 Score=117.84 Aligned_cols=53 Identities=34% Similarity=0.494 Sum_probs=48.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR 143 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~ 143 (321)
+|||+|||||++|+.+|+.|++. |++|+|||+...+||.|++.++++.+.+..
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~gcipsk~l~~ 57 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTGTIPSKALRE 57 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccCCCCHHHHHH
Confidence 69999999999999999999999 999999999888999999999888765543
No 119
>PLN02697 lycopene epsilon cyclase
Probab=99.33 E-value=1.5e-11 Score=119.38 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=82.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc--cccCcccchhhhccchHHHHHHHcCCCcccC-----C
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--AWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-----D 161 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~--~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~-----~ 161 (321)
..|||+|||||++|+++|++|++. |++|+|||+......+ .|. ..+...-........+...-+.+... +
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n~GvW~--~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~ 183 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNNYGVWE--DEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG 183 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCccccch--hHHHhcCcHHHHHhhcCCcEEEecCCceeecc
Confidence 358999999999999999999999 9999999986433222 111 00000000000000011100101100 1
Q ss_pred CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..+...+...+.+.|++++. +.|+++ .+++|+++..+++.+..+.+. ++.+++|+.||+|+|..
T Consensus 184 ~~Yg~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~--------------dG~~i~A~lVI~AdG~~ 247 (529)
T PLN02697 184 RAYGRVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACE--------------DGRVIPCRLATVASGAA 247 (529)
T ss_pred CcccEEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEc--------------CCcEEECCEEEECCCcC
Confidence 11123456778888888886 579998 556999988766655434332 12679999999999977
Q ss_pred C
Q 020815 242 G 242 (321)
Q Consensus 242 ~ 242 (321)
+
T Consensus 248 S 248 (529)
T PLN02697 248 S 248 (529)
T ss_pred h
Confidence 6
No 120
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.32 E-value=5.5e-11 Score=112.52 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=84.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc---
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--- 158 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~--- 158 (321)
-+|+|||||++|+++|+.|++. |++|+|+|+.+...... .+ ........+.|+++|+ ...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEVG--AG-----LQLAPNAMRHLERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcCC--cc-----ceeChhHHHHHHHCCChHHHhhcccCcceEE
Confidence 3799999999999999999999 99999999986542110 00 1111122223333322 000
Q ss_pred --c----------------C---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecc
Q 020815 159 --E----------------Q---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (321)
Q Consensus 159 --~----------------~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~ 217 (321)
. . ...+...+...+.+.|++.+.+..+++++++++++++..+++.+.......
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~------ 148 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRT------ 148 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeC------
Confidence 0 0 001123456778888888887567899999999999987666543222110
Q ss_pred cCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 218 HDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 218 ~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+ ...+++||.||.|+|.+|
T Consensus 149 -~-----~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 149 -N-----SVETVSAAYLIACDGVWS 167 (400)
T ss_pred -C-----CCcEEecCEEEECCCccH
Confidence 0 225789999999999554
No 121
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.32 E-value=4.5e-11 Score=112.98 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc----chHH-HHHHHc------CC--Cc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR----KPAH-IFLDEL------GI--DY 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~----~~~~-~~l~~~------g~--~~ 157 (321)
+||+||||||+|++||+.|++. |++|+||||....+..| ++.+....+.. .... ..+... +. .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence 5899999999999999999999 99999999976544322 22222111111 0000 011110 00 01
Q ss_pred cc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815 158 DE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (321)
Q Consensus 158 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~ 232 (321)
.. ...+....+...|.+.|.+++. +.|++++.++ ++++... .+...+|.... ...+...++..+++||
T Consensus 78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~-----~~~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 78 GRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYIS-----SDSGGPSGTRCTLEVD 150 (398)
T ss_pred ccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEee-----ccccccCCCccEEEeC
Confidence 10 0122223456777788888876 6799998884 7776542 23334444321 0000001234689999
Q ss_pred eEEEcCCCCCCC
Q 020815 233 VVVSSCGHDGPF 244 (321)
Q Consensus 233 ~VI~AtG~~~~~ 244 (321)
+||.|+|..+.+
T Consensus 151 ~VIgADG~~S~v 162 (398)
T TIGR02028 151 AVIGADGANSRV 162 (398)
T ss_pred EEEECCCcchHH
Confidence 999999966543
No 122
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.4e-11 Score=117.64 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=78.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHH-cCCCcccCCCeEEEe
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDE-LGIDYDEQDNYVVIK 167 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~ 167 (321)
.+||+|||||++|+++|++|.+. |.. ++|+||+..+||..|.. .+..+..+.+ .++.. -+.+|.....+.-..
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~--ry~~l~~~~p--~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYN--RYPGLRLDSP--KWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhc--cCCceEECCc--hheeccCCCccCCcccCCCcc
Confidence 68999999999999999999999 888 99999999898875532 1111111111 11111 122232112222222
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~ 245 (321)
...++....+++.... .++.+++.|+.+..++ +...-|.+..+ ...++.||.||+|||.++.+.
T Consensus 83 ~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~~~~------------~~~~~~a~~vV~ATG~~~~P~ 147 (443)
T COG2072 83 EIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTTSDG------------GTGELTADFVVVATGHLSEPY 147 (443)
T ss_pred cHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEEcCC------------CeeeEecCEEEEeecCCCCCC
Confidence 2344444444444322 3455555555555554 33445555321 112288999999999766533
No 123
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.32 E-value=5.3e-11 Score=111.61 Aligned_cols=134 Identities=21% Similarity=0.223 Sum_probs=82.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccch---------hhhc-----------------
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS---------AMVV----------------- 142 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~---------~~~~----------------- 142 (321)
|||+|||||++|+++|++|+++ |.+|+|||+....+ ++.+....... .+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence 6999999999999999999999 99999999975432 22211111000 0000
Q ss_pred -----------c-----chHHHHHHHcCCCccc---------------CCCe-EE------EecHHHHHHHHHHHHHcCC
Q 020815 143 -----------R-----KPAHIFLDELGIDYDE---------------QDNY-VV------IKHAALFTSTIMSKLLARP 184 (321)
Q Consensus 143 -----------~-----~~~~~~l~~~g~~~~~---------------~~~~-~~------~~~~~~~~~~l~~~~~~~~ 184 (321)
. ....+.+++.|++... ...+ .+ ..+...+...|.+.+. ..
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~-~~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAE-AH 158 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHH-Hc
Confidence 0 0011222333432110 0000 00 2244567777777665 57
Q ss_pred CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 185 gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
|++++.+++|+++..+++.+. |.+. ..++.|+.||+|+|++.
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~-v~~~---------------~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVT-VKTT---------------KGSYQANKLVVTAGAWT 200 (380)
T ss_pred CCEEECCCeEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCcch
Confidence 999999999999987766543 4442 14789999999999764
No 124
>PRK07588 hypothetical protein; Provisional
Probab=99.31 E-value=5.7e-11 Score=112.02 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=81.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchhhhccchHHHHHHHcCC---------Cccc-
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE- 159 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~~- 159 (321)
||+|||||++|+++|+.|++. |++|+|+||.+... |..+. ......+.|+++|+ ++..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~~~~---------l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 71 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRTGGYMVD---------FWGVGYEVAKRMGITDQLREAGYQIEHV 71 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccCCCeEEe---------ccCcHHHHHHHcCCHHHHHhccCCccce
Confidence 899999999999999999999 99999999986542 11110 00111122222222 1110
Q ss_pred -----C----------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 160 -----Q----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 160 -----~----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
. +......+...+.+.|++.+ ..+++++++++|+++..+++.+. +.+.
T Consensus 72 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~-------- 140 (391)
T PRK07588 72 RSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFE-------- 140 (391)
T ss_pred EEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEEC--------
Confidence 0 00112334566667776655 34799999999999988777544 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCCCc
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~~~ 245 (321)
++.++++|.||.|+|..+...
T Consensus 141 ------~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 141 ------RGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred ------CCCEEEeCEEEECCCCCccch
Confidence 225689999999999766543
No 125
>PRK11445 putative oxidoreductase; Provisional
Probab=99.31 E-value=8.1e-11 Score=109.45 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=84.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccchhhhccchHHHHHHHcCCCcccC--------
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-------- 160 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~-------- 160 (321)
|||+|||||++|+++|+.|++. ++|+|||+.+..+ +....+|. .......+.|+++|+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g~-----~l~~~~~~~L~~lgl~~~~~~~~~~~~~ 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCGG-----LLAPDAQKSFAKDGLTLPKDVIANPQIF 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCcC-----ccCHHHHHHHHHcCCCCCcceeeccccc
Confidence 7999999999999999999986 8999999986542 11111111 12233445566555531100
Q ss_pred ---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 161 ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 161 ---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
...+...+...+.+.|.+.. ..+++++.++.++++..+++.+. +.... +++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~--~~gv~v~~~~~v~~i~~~~~~~~-v~~~~-----------~g~ 140 (351)
T PRK11445 75 AVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI--PASVEVYHNSLCRKIWREDDGYH-VIFRA-----------DGW 140 (351)
T ss_pred eeeEecccccchhhcCCCcccccHHHHHHHHHHHH--hcCCEEEcCCEEEEEEEcCCEEE-EEEec-----------CCc
Confidence 00112234556666666543 46899999999999987766433 33211 112
Q ss_pred ceEEEcCeEEEcCCCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~~ 244 (321)
..+++|++||+|+|..+..
T Consensus 141 ~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 141 EQHITARYLVGADGANSMV 159 (351)
T ss_pred EEEEEeCEEEECCCCCcHH
Confidence 3479999999999977644
No 126
>PRK06370 mercuric reductase; Validated
Probab=99.31 E-value=1.8e-11 Score=117.96 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCccc--CCCe
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDE--QDNY 163 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~--~~~~ 163 (321)
+|||+|||+|++|+++|+.|++. |++|+|||+. ..||+|.+.||++.+.+..... .+....+|++... ..++
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL-GMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 69999999999999999999999 9999999996 6899999999999887765432 1223446664321 1111
Q ss_pred EEEe-cHHH----HHHHHHHHHHcCC-CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815 164 VVIK-HAAL----FTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (321)
Q Consensus 164 ~~~~-~~~~----~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A 237 (321)
.... .... +...+.+.+. +. |++++.++.+ ..++.++ .+. ..++++|+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~v~~g~~~---~~~~~~v---~v~---------------~~~~~~d~lViA 140 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLR-GLEGVDVFRGHAR---FESPNTV---RVG---------------GETLRAKRIFIN 140 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHh-cCCCcEEEEEEEE---EccCCEE---EEC---------------cEEEEeCEEEEc
Confidence 1100 1111 1122233333 44 8999888643 2233332 221 156899999999
Q ss_pred CCCCC
Q 020815 238 CGHDG 242 (321)
Q Consensus 238 tG~~~ 242 (321)
||...
T Consensus 141 TGs~p 145 (463)
T PRK06370 141 TGARA 145 (463)
T ss_pred CCCCC
Confidence 99754
No 127
>PRK07538 hypothetical protein; Provisional
Probab=99.31 E-value=9.2e-11 Score=111.47 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=82.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---- 158 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~---- 158 (321)
||+|||||++|+++|+.|++. |++|+|+|+.+.+.-. ..+. .......+.|+++|+ +..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--g~gi-----~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~ 73 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRPL--GVGI-----NLLPHAVRELAELGLLDALDAIGIRTRELAY 73 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCccccc--Ccce-----eeCchHHHHHHHCCCHHHHHhhCCCCcceEE
Confidence 899999999999999999999 9999999998654311 0000 001111222222221 100
Q ss_pred --cCC--------------Ce-EEEecHHHHHHHHHHHHHcCCC-cEEEcCceEEEEEEECCEEEEEEEeecceecccCC
Q 020815 159 --EQD--------------NY-VVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (321)
Q Consensus 159 --~~~--------------~~-~~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~ 220 (321)
..+ .+ .+..+...+.+.|++.+.+..| .+++++++++++..+++.+. +.+.+ .
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~------~-- 144 (413)
T PRK07538 74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGD------R-- 144 (413)
T ss_pred EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEec------c--
Confidence 000 01 1224567788888888765445 57999999999987655422 22211 0
Q ss_pred CCCCCceEEEcCeEEEcCCCCCC
Q 020815 221 QSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 221 ~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+++..+++||.||.|+|..+.
T Consensus 145 -~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 145 -AGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred -CCCccceEEeeEEEECCCCCHH
Confidence 1124468999999999995553
No 128
>PRK06847 hypothetical protein; Provisional
Probab=99.31 E-value=5.6e-11 Score=111.29 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=83.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc--
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-- 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~-- 158 (321)
..||+|||||++|+++|+.|++. |++|+|+|+...+.... .+. .......+.|+++|+ +..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g~-----~l~~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVYG--AGI-----TLQGNALRALRELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccCC--cee-----eecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence 46999999999999999999999 99999999986532110 000 001111122222221 111
Q ss_pred ----cCCC--------------e--EEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 ----EQDN--------------Y--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 ----~~~~--------------~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
..+. + ....+...+.+.|.+.+. +.|++++++++++++..+++.+. +.+.
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~-------- 145 (375)
T PRK06847 76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGVT-VTFS-------- 145 (375)
T ss_pred EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEEE-EEEc--------
Confidence 0000 0 012234566777777775 57999999999999987666532 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.++++|.||+|+|.++..
T Consensus 146 ------~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 146 ------DGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred ------CCCEEEcCEEEECcCCCcch
Confidence 12579999999999977644
No 129
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.30 E-value=1.1e-10 Score=109.95 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=81.6
Q ss_pred cccEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~ 158 (321)
.+||+|||||++|+++|+.|++. .|.+|+|+|+...... ...+ .............+.++++|+ +..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~-~~~~-~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESD-AHPG-FDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccc-cCCC-CCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 58999999999999999999874 2899999999532110 0000 000000001111122222222 100
Q ss_pred c-----C---------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 159 E-----Q---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 159 ~-----~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
. . .......+...+.+.|++.+.+..|++++++++++++..+++.+. +.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~------- 152 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDD------- 152 (395)
T ss_pred EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECC-------
Confidence 0 0 001122334566677788777667899999999999987666543 44321
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.++++|+||.|+|..+.
T Consensus 153 -------g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 153 -------GETLTGRLLVAADGSHSA 170 (395)
T ss_pred -------CCEEEeCEEEEecCCChh
Confidence 257899999999996653
No 130
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.30 E-value=1.5e-10 Score=110.89 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=82.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh----ccchHH-HHHHHc------C--CC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV----VRKPAH-IFLDEL------G--ID 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~----~~~~~~-~~l~~~------g--~~ 156 (321)
+|||+||||||+|+++|+.|++. |++|+|||+.....-. .++.+....+ ...... +.+... + +.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~k~--cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNAKP--CGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCC--ccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 58999999999999999999999 9999999997432111 1222211111 000110 111111 1 11
Q ss_pred ccc---CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815 157 YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (321)
Q Consensus 157 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a 231 (321)
+.. ...+....+...|.+.|.+++. +.|++++.+ .++++..++ +....|.+... ..+...++..+++|
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~-----~~~~~~g~~~~v~a 188 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTSY-----DSGSGAGTPKTLEV 188 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEec-----cccccCCCccEEEe
Confidence 111 0123334567788888888887 579999876 577776432 22223333210 00000123468999
Q ss_pred CeEEEcCCCCCC
Q 020815 232 KVVVSSCGHDGP 243 (321)
Q Consensus 232 ~~VI~AtG~~~~ 243 (321)
|.||.|+|..+.
T Consensus 189 ~~VIgADG~~S~ 200 (450)
T PLN00093 189 DAVIGADGANSR 200 (450)
T ss_pred CEEEEcCCcchH
Confidence 999999995543
No 131
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.30 E-value=1e-10 Score=113.88 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=36.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..|||||||||+.|+++|+.|+++ |++|+||||++..+|++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASATS 45 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence 369999999999999999999999 99999999987655544
No 132
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.30 E-value=3.4e-11 Score=116.39 Aligned_cols=141 Identities=19% Similarity=0.240 Sum_probs=85.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc--------CCCCCccccCcccchhhhccchH-HHHH---HHcCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS--------VSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDY 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~--------~~~gg~~~~~g~~~~~~~~~~~~-~~~l---~~~g~~~ 157 (321)
+|||+|||+|++|..+|+.+++..|++|+|||+. ..+||+|.+.||++.+.+..... .+.+ ..+|+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 6999999999999999999999328999999984 46899999999999998876532 2333 3455543
Q ss_pred ccCC---CeEE-EecHHHHHHHH---HHHHHcC-CCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815 158 DEQD---NYVV-IKHAALFTSTI---MSKLLAR-PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 229 (321)
Q Consensus 158 ~~~~---~~~~-~~~~~~~~~~l---~~~~~~~-~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 229 (321)
+... ++.. ..+.......+ +....++ .|++++.+. ....+++.+ .|.... ++......++
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~---a~f~~~~~v-~V~~~~--------~~~~~~~~~~ 150 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW---GALEDKNVV-LVRESA--------DPKSAVKERL 150 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE---EEEccCCEE-EEeecc--------CCCCCcceEE
Confidence 2110 1111 11112222222 1222334 589999874 222334332 222100 0000113579
Q ss_pred EcCeEEEcCCCCC
Q 020815 230 EAKVVVSSCGHDG 242 (321)
Q Consensus 230 ~a~~VI~AtG~~~ 242 (321)
++|+||+|||...
T Consensus 151 ~~d~lIIATGs~p 163 (486)
T TIGR01423 151 QAEHILLATGSWP 163 (486)
T ss_pred ECCEEEEecCCCC
Confidence 9999999999765
No 133
>PRK06116 glutathione reductase; Validated
Probab=99.30 E-value=1e-11 Score=119.25 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=83.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHH----HHHcCCCcccC-CCe
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY 163 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~----l~~~g~~~~~~-~~~ 163 (321)
+|||+|||||++|++||+.|++. |++|+|||+. ..||.|.+.||++.+.+..... .+. ...+|+..... .++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 69999999999999999999999 9999999996 7899999999999887665421 122 23455543211 011
Q ss_pred EEEe-cH----HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 164 VVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 164 ~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
.... .. ..+...+ ++..++.|++++.+ +++.+ +..+ |.+ + ..++++|+||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~l~~~gv~~~~g-~~~~v--~~~~---v~~-~--------------g~~~~~d~lViAT 139 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSY-RNGLENNGVDLIEG-FARFV--DAHT---VEV-N--------------GERYTADHILIAT 139 (450)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCCEEEEE-EEEEc--cCCE---EEE-C--------------CEEEEeCEEEEec
Confidence 0000 00 1112222 23334679999887 34433 3332 222 1 1579999999999
Q ss_pred CCCC
Q 020815 239 GHDG 242 (321)
Q Consensus 239 G~~~ 242 (321)
|...
T Consensus 140 Gs~p 143 (450)
T PRK06116 140 GGRP 143 (450)
T ss_pred CCCC
Confidence 9765
No 134
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.29 E-value=1.2e-10 Score=116.13 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=87.2
Q ss_pred cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------C---
Q 020815 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D--- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~--- 156 (321)
++||+||||||+||++|+.|++ . |++|.|||+.+.+.... .+. .......+.|+++|+ .
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~~g-rA~------gl~prtleiL~~lGl~d~l~~~g~~~~~ 103 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLELG-QAD------GIACRTMEMFQAFGFAERILKEAYWINE 103 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCC-eee------EEChHHHHHHHhccchHHHHhhcccccc
Confidence 6899999999999999999999 7 99999999986432100 000 011112222222222 0
Q ss_pred ---ccc--------------------CCCe-EEEecHHHHHHHHHHHHHcCC-CcEEEcCceEEEEEEECC--EEEEEEE
Q 020815 157 ---YDE--------------------QDNY-VVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGG--RVGGVVT 209 (321)
Q Consensus 157 ---~~~--------------------~~~~-~~~~~~~~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~--~v~gv~~ 209 (321)
|.. ...+ .+..+...+.+.|++.+.+.. ++++.++++++++..++. .-+.|.+
T Consensus 104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l 183 (634)
T PRK08294 104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTL 183 (634)
T ss_pred eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEE
Confidence 000 0001 134455667778888776332 368899999999987642 1122333
Q ss_pred eecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcC
Q 020815 210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256 (321)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g 256 (321)
.+ .++..+|+..+++||+||.|+| .+|.+|+..+++
T Consensus 184 ~~------~~~~~~g~~~tv~A~~lVGaDG-----a~S~VR~~lgi~ 219 (634)
T PRK08294 184 RR------TDGEHEGEEETVRAKYVVGCDG-----ARSRVRKAIGRE 219 (634)
T ss_pred EE------CCCCCCCceEEEEeCEEEECCC-----CchHHHHhcCCC
Confidence 21 0000123347899999999999 455566655443
No 135
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=1e-10 Score=113.86 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=36.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.+|||+|||||+.|+++|+.|+++ |++|+||||++..+|++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~GtS 45 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGTS 45 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCCc
Confidence 369999999999999999999999 99999999997665554
No 136
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.29 E-value=6.9e-11 Score=112.27 Aligned_cols=58 Identities=29% Similarity=0.413 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
...+...|.+.+. +.|++|+++++|+++..+++++.+|.+. ..+++||.||+|+|.++
T Consensus 200 p~~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~---------------~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTG---------------GGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeC---------------CcEEeCCEEEECCCcch
Confidence 4566677777775 6799999999999998888877777653 25789999999999765
No 137
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.29 E-value=3.1e-11 Score=115.34 Aligned_cols=141 Identities=21% Similarity=0.305 Sum_probs=89.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCcccchhh----hc----------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQLFSAM----VV---------------- 142 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~------~~g~~~~~~----~~---------------- 142 (321)
.++||+|||||+.|+.+|+.++.+ |++|+|+|+++...|++. ++|-.+-.. +.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 579999999999999999999999 999999999988776652 122111000 00
Q ss_pred -----------cc-----h----HHHHHHHc-CCC--------------------cccC---CCeEE---EecHHHHHHH
Q 020815 143 -----------RK-----P----AHIFLDEL-GID--------------------YDEQ---DNYVV---IKHAALFTST 175 (321)
Q Consensus 143 -----------~~-----~----~~~~l~~~-g~~--------------------~~~~---~~~~~---~~~~~~~~~~ 175 (321)
.+ + ....++.+ |+. +... +.+.+ +.+...+.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 00 0 00011111 100 0000 01111 1122334444
Q ss_pred HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
+...+. +.|.+++..++|+.+..+++ +.||.+.+. .+|+..+++|+.||.|+|.+
T Consensus 170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D~---------~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVEDR---------ETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEec---------CCCcEEEEEcCEEEECCCcc
Confidence 444444 68999999999999999998 999998652 23456889999999999944
No 138
>PRK13748 putative mercuric reductase; Provisional
Probab=99.29 E-value=5e-11 Score=117.65 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=49.6
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~ 144 (321)
.+|||+|||||++|+.+|+.|++. |++|+|||+. .+||.|.+.||++++.+...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 369999999999999999999999 9999999997 79999999999998877654
No 139
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.28 E-value=4.8e-11 Score=115.47 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccchHH----HHHHHcCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDY 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~~~~----~~l~~~g~~~ 157 (321)
+|||||||+|++|+.+|+.|++. |++|+|||+.. ..||.|.+.||++++.+...... +....+|+.+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 58999999999999999999999 99999999731 47999999999999887664322 2234566654
Q ss_pred ccC--CCeEE-EecHHHHHHH---HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEc
Q 020815 158 DEQ--DNYVV-IKHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (321)
Q Consensus 158 ~~~--~~~~~-~~~~~~~~~~---l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a 231 (321)
... -+|.. ..+....... -+....+..|++++.+.. ...+.+.+ .+.. .+++..++++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a---~f~~~~~v---~v~~----------~~g~~~~~~~ 144 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA---EFVDKHRI---KATN----------KKGKEKIYSA 144 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE---EEcCCCEE---EEec----------cCCCceEEEe
Confidence 321 11111 1111112211 122334467899987732 12233332 2211 1113357999
Q ss_pred CeEEEcCCCCC
Q 020815 232 KVVVSSCGHDG 242 (321)
Q Consensus 232 ~~VI~AtG~~~ 242 (321)
|+||+|||...
T Consensus 145 d~lVIATGs~p 155 (484)
T TIGR01438 145 ERFLIATGERP 155 (484)
T ss_pred CEEEEecCCCC
Confidence 99999999754
No 140
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.28 E-value=9.4e-11 Score=110.57 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=81.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC---------ccc-
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YDE- 159 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~---------~~~- 159 (321)
.+||+|||||++|+++|+.|++. |++|+||||.+...-..-.+. ........+.|+++|+. .+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 75 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVLGRIRA-----GVLEQGTVDLLREAGVDERMDREGLVHEGT 75 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccCCceeE-----eeECHHHHHHHHHCCChHHHHhcCceecce
Confidence 47999999999999999999999 999999999864210000000 01122233444444431 110
Q ss_pred ----CCC------------eEE-EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815 160 ----QDN------------YVV-IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS 222 (321)
Q Consensus 160 ----~~~------------~~~-~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~ 222 (321)
... ... ......+...|++.+. ..++.++++.+++.+...++....|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~~V~~~~----------- 143 (390)
T TIGR02360 76 EIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRPYVTFER----------- 143 (390)
T ss_pred EEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCccEEEEEE-----------
Confidence 000 000 1123455677777765 46889999888877754333223344421
Q ss_pred CCCceEEEcCeEEEcCCCCCCC
Q 020815 223 CMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 223 ~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+|+..+++||.||.|+|.+|.+
T Consensus 144 ~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 144 DGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred CCeEEEEEeCEEEECCCCchhh
Confidence 1123579999999999966543
No 141
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.28 E-value=9.5e-11 Score=112.46 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=84.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccc-hhh-------hccchHHHHHH--------H-
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-SAM-------VVRKPAHIFLD--------E- 152 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~-~~~-------~~~~~~~~~l~--------~- 152 (321)
..+|+|||||++||+||.+|.+. |++|+|+|++..+||.+....... +.. .......+-|. .
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46999999999999999999999 999999999998988653221100 000 00001111111 0
Q ss_pred cCCCcccC-----CCeEEEecHHHHHHHHHHHHHcCCCcE--EEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 153 LGIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 153 ~g~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
..+++... .....+....++.++|.+.+. +.++. ++++++|+++..++++.. |.+.. .. +.
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~-~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~~------~~----~~ 156 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAR-EFKIEEMVRFETEVVRVEPVDGKWR-VQSKN------SG----GF 156 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHH-HcCCcceEEecCEEEEEeecCCeEE-EEEEc------CC----Cc
Confidence 11222110 011112244667777666664 67877 899999999987665432 33321 00 12
Q ss_pred ceEEEcCeEEEcCCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~ 243 (321)
..+..+|.||+|+|.+..
T Consensus 157 ~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred eEEEEcCEEEEeccCCCC
Confidence 235688999999997653
No 142
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.28 E-value=7.9e-11 Score=111.64 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
..+...|.+.+. +.|++++.+++|+++... ++++.+|.+.. .++.|+.||+|+|++..
T Consensus 183 ~~l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGAD-RRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------GFIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------ceEECCEEEECCChhhH
Confidence 445566666665 679999999999999764 56677777632 46999999999997653
No 143
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=1.5e-10 Score=109.94 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~ 126 (321)
+||+|||||++|+++|++|++. |.+|+|||++..+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 5999999999999999999999 9999999998643
No 144
>PLN02463 lycopene beta cyclase
Probab=99.28 E-value=1.3e-10 Score=110.98 Aligned_cols=134 Identities=19% Similarity=0.249 Sum_probs=82.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-ccchhhhccchHHHHHHH-cC---CCccc-----
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDE-LG---IDYDE----- 159 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-~~~~~~~~~~~~~~~l~~-~g---~~~~~----- 159 (321)
.|||+|||||++|+++|+.|++. |++|+|||+.+... |... +.....+......+.++. +. +.++.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~---~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSI---WPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccch---hccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 58999999999999999999999 99999999975321 1110 100000000000011111 00 00000
Q ss_pred CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
....+...+...+.+.|++++. +.|++++. .+|+++..+++.+ .|.+.+ +.+++|+.||+|+|
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~-~~GV~~~~-~~V~~I~~~~~~~-~V~~~d--------------G~~i~A~lVI~AdG 166 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCI-ANGVQFHQ-AKVKKVVHEESKS-LVVCDD--------------GVKIQASLVLDATG 166 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHh-hcCCEEEe-eEEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEECcC
Confidence 0111222356778888888886 57999974 5899988776643 344432 25899999999999
Q ss_pred CCCCC
Q 020815 240 HDGPF 244 (321)
Q Consensus 240 ~~~~~ 244 (321)
..+.+
T Consensus 167 ~~s~l 171 (447)
T PLN02463 167 FSRCL 171 (447)
T ss_pred CCcCc
Confidence 87653
No 145
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.28 E-value=9.8e-11 Score=109.65 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=83.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCcccc---------------------hh-------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLF---------------------SA------- 139 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~g--g~~~~~g~~~---------------------~~------- 139 (321)
+|||+|||||++|+++|++|++. |++|+|||++...+ +.++....+. ..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999 99999999986432 1111100000 00
Q ss_pred -hh-------c--c-----chHHHHHHHcCCCccc---------------CCC-eEE------EecHHHHHHHHHHHHHc
Q 020815 140 -MV-------V--R-----KPAHIFLDELGIDYDE---------------QDN-YVV------IKHAALFTSTIMSKLLA 182 (321)
Q Consensus 140 -~~-------~--~-----~~~~~~l~~~g~~~~~---------------~~~-~~~------~~~~~~~~~~l~~~~~~ 182 (321)
.. . . ....+.++++|++... ... ..+ ..+...+...+.+.+.
T Consensus 82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~- 160 (376)
T PRK11259 82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR- 160 (376)
T ss_pred ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH-
Confidence 00 0 0 0111223344543210 000 000 1234566666666665
Q ss_pred CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 183 ~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.|++++.+++|+++..+++.+ .|.+.. .+++||.||+|+|.+.
T Consensus 161 ~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---------------g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 161 EAGAELLFNEPVTAIEADGDGV-TVTTAD---------------GTYEAKKLVVSAGAWV 204 (376)
T ss_pred HCCCEEECCCEEEEEEeeCCeE-EEEeCC---------------CEEEeeEEEEecCcch
Confidence 5799999999999998877643 344421 3689999999999764
No 146
>PTZ00367 squalene epoxidase; Provisional
Probab=99.28 E-value=1.5e-10 Score=113.40 Aligned_cols=147 Identities=24% Similarity=0.273 Sum_probs=87.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCc-----------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY----------- 157 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~----------- 157 (321)
.+|||+|||||++|+++|+.|++. |.+|+|+|+.....-... .| ........+.|+++|+.-
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~r~-~G-----~~L~p~g~~~L~~LGL~d~l~~i~~~~~~ 104 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPDRI-VG-----ELLQPGGVNALKELGMEECAEGIGMPCFG 104 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccchh-hh-----hhcCHHHHHHHHHCCChhhHhhcCcceee
Confidence 479999999999999999999999 999999999751100000 00 112334455566665421
Q ss_pred ----ccCCCe----------EEEecHHHHHHHHHHHH--HcCCCcEEEcCceEEEEEEECC----EEEEEEEeecce---
Q 020815 158 ----DEQDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALV--- 214 (321)
Q Consensus 158 ----~~~~~~----------~~~~~~~~~~~~l~~~~--~~~~gv~i~~~~~v~~l~~~~~----~v~gv~~~~~~~--- 214 (321)
+..+.. ....+...+.+.|.+.+ ....|++++.. +++++..+++ ++.+|.......
T Consensus 105 ~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~~ 183 (567)
T PTZ00367 105 YVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYDV 183 (567)
T ss_pred eEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCcccc
Confidence 000100 01123456777777766 33578999765 7888876543 477777642100
Q ss_pred ---ecccC-----CCCCCCceEEEcCeEEEcCCCCCC
Q 020815 215 ---SMNHD-----TQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 215 ---~~~~~-----~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
....+ +-...++.+++||.||.|+|.++.
T Consensus 184 ~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~ 220 (567)
T PTZ00367 184 PENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK 220 (567)
T ss_pred cccccccccccccccccccceEEEeCEEEECCCcchH
Confidence 00000 000012468999999999995553
No 147
>PRK05868 hypothetical protein; Validated
Probab=99.27 E-value=1.5e-10 Score=108.53 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=78.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---- 158 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~---- 158 (321)
||+|||||++|+++|+.|++. |++|+|||+.+.+...... ........+.|+++|+ ++.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~g~~-------i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~ 74 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPGGQA-------IDVRGPALDVLERMGLLAAAQEHKTRIRGASF 74 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCcee-------eeeCchHHHHHHhcCCHHHHHhhccCccceEE
Confidence 899999999999999999999 9999999998754321100 0011112223333332 100
Q ss_pred --cCC-----------------CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 159 --EQD-----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 159 --~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
..+ ...+..+...+.+.|.+.+ ..|++++++++++++..+++.+. +...+
T Consensus 75 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~d-------- 143 (372)
T PRK05868 75 VDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDDGDSVR-VTFER-------- 143 (372)
T ss_pred EeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEecCCeEE-EEECC--------
Confidence 000 0011223345555444333 46899999999999976665443 33322
Q ss_pred CCCCCCceEEEcCeEEEcCCCCCC
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.+++||.||.|+|..+.
T Consensus 144 ------g~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 144 ------AAAREFDLVIGADGLHSN 161 (372)
T ss_pred ------CCeEEeCEEEECCCCCch
Confidence 257899999999995553
No 148
>PRK06996 hypothetical protein; Provisional
Probab=99.26 E-value=2.5e-10 Score=107.92 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=86.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC----CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc------c
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD------E 159 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G----~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~------~ 159 (321)
++||+|||||++|+++|+.|++. | ++|+|+|+.....-. .............+.|+++|+.-. .
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~~-----~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~ 84 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAASA-----NDPRAIALSHGSRVLLETLGAWPADATPIEH 84 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcCC-----CCceEEEecHHHHHHHHhCCCchhcCCcccE
Confidence 68999999999999999999998 5 579999997532210 011112233445556666654100 0
Q ss_pred ------C--------------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC
Q 020815 160 ------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (321)
Q Consensus 160 ------~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~ 219 (321)
. +.+.+..+...+.+.|.+++. +.+++++.+++++++..+++.+. +...+ .
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~~-------~ 155 (398)
T PRK06996 85 IHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALGT-------P 155 (398)
T ss_pred EEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEECC-------C
Confidence 0 011223455678888888887 56899999999999876665433 22211 0
Q ss_pred CCCCCCceEEEcCeEEEcCCCC
Q 020815 220 TQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 220 ~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
+ ...+++||+||.|+|+.
T Consensus 156 ---~-g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 156 ---Q-GARTLRARIAVQAEGGL 173 (398)
T ss_pred ---C-cceEEeeeEEEECCCCC
Confidence 0 12579999999999953
No 149
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.26 E-value=6.3e-11 Score=105.59 Aligned_cols=138 Identities=25% Similarity=0.301 Sum_probs=98.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCcccCCCe-
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQDNY- 163 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~~~~~~~- 163 (321)
.+||.+|||||..|+++|+++++. |.+|.|+|..-..||+|.+.||.+.+.+.+.. .++...++|++......+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 379999999999999999999999 99999999987899999999999999887753 234445688877554333
Q ss_pred -EEEecH-HHH---HHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 164 -VVIKHA-ALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 164 -~~~~~~-~~~---~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
..+... ..+ .+.++++.+++.+++++++.. . ..+++.+ .|..++ +....++|+++++|+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a-~--f~~~~~v-~V~~~d------------~~~~~Ytak~iLIAt 161 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA-R--FVSPGEV-EVEVND------------GTKIVYTAKHILIAT 161 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE-E--EcCCCce-EEEecC------------CeeEEEecceEEEEe
Confidence 222211 122 356677777788899988732 1 1233332 233322 233669999999999
Q ss_pred CCCCC
Q 020815 239 GHDGP 243 (321)
Q Consensus 239 G~~~~ 243 (321)
|+...
T Consensus 162 Gg~p~ 166 (478)
T KOG0405|consen 162 GGRPI 166 (478)
T ss_pred CCccC
Confidence 97764
No 150
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.25 E-value=4e-11 Score=115.97 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=84.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEec------cCCCCCccccCcccchhhhccch-HHH----HHHHcCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ------SVSPGGGAWLGGQLFSAMVVRKP-AHI----FLDELGIDYD 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk------~~~~gg~~~~~g~~~~~~~~~~~-~~~----~l~~~g~~~~ 158 (321)
+|||+|||||++|++||+.|++. |++|+|||+ ....||+|.+.+|++.+.+.... ... .+..+|+++.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 69999999999999999999999 999999998 34689999999998876654431 122 2245666543
Q ss_pred cC-CCeEEEe-cHHHHHH---HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815 159 EQ-DNYVVIK-HAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV 233 (321)
Q Consensus 159 ~~-~~~~~~~-~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~ 233 (321)
.. .++.... ....... .-++.+.+..+++++.+. +..+..+++. ..|.+.. + +..++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~-~~v~v~~-------~-----~~~~~~~d~ 148 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAG-YEIKVTG-------E-----DETVITAKH 148 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCC-CEEEEec-------C-----CCeEEEeCE
Confidence 21 1111101 1111111 123344446799998773 4333222211 1122211 0 125799999
Q ss_pred EEEcCCCCC
Q 020815 234 VVSSCGHDG 242 (321)
Q Consensus 234 VI~AtG~~~ 242 (321)
||+|||...
T Consensus 149 lViATGs~p 157 (475)
T PRK06327 149 VIIATGSEP 157 (475)
T ss_pred EEEeCCCCC
Confidence 999999765
No 151
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.6e-11 Score=107.66 Aligned_cols=113 Identities=22% Similarity=0.318 Sum_probs=75.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
.|||+||||||+||+||+++++. +++ ++|+|+. .+||.. .. .. .......+.-...
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~-~~gg~~------~~--------------~~-~venypg~~~~~~ 59 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGG-EPGGQL------TK--------------TT-DVENYPGFPGGIL 59 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecC-CcCCcc------cc--------------ce-eecCCCCCccCCc
Confidence 58999999999999999999999 999 6666664 444311 00 00 0000111222234
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
...+.+.+.+++. ..++++.. ..|..+...++ ..-|.+.. .+++||.||+|||....
T Consensus 60 g~~L~~~~~~~a~-~~~~~~~~-~~v~~v~~~~~-~F~v~t~~---------------~~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 60 GPELMEQMKEQAE-KFGVEIVE-DEVEKVELEGG-PFKVKTDK---------------GTYEAKAVIIATGAGAR 116 (305)
T ss_pred hHHHHHHHHHHHh-hcCeEEEE-EEEEEEeecCc-eEEEEECC---------------CeEEEeEEEECcCCccc
Confidence 5677777777776 78999988 46776655544 45555532 34999999999996553
No 152
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.25 E-value=9.5e-11 Score=112.23 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=77.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
+|||+|||||++|++||..|++. |.+|+|||+... .||.|++.+|++.+.+.... +.+.+|... ...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~------~~~~~~~~~-----~~~ 70 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAA------EKNLSFEQV-----MAT 70 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhh------hcCCCHHHH-----HHH
Confidence 59999999999999999999999 999999999864 69999988888876543321 112222110 000
Q ss_pred HH----HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~----~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.. .+.....+.+ ++.+++++.++. .. .++.++ .+... .+..++++|+||+|||...
T Consensus 71 ~~~~~~~~~~~~~~~~-~~~gV~~~~g~~-~~--~~~~~v-~v~~~-------------~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 71 KNTVTSRLRGKNYAML-AGSGVDLYDAEA-HF--VSNKVI-EVQAG-------------DEKIELTAETIVINTGAVS 130 (438)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCEEEEEEE-EE--ccCCEE-EEeeC-------------CCcEEEEcCEEEEeCCCCC
Confidence 11 1112222333 357899887742 21 233332 22210 0225799999999999765
No 153
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.24 E-value=1.9e-10 Score=115.58 Aligned_cols=136 Identities=19% Similarity=0.219 Sum_probs=84.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchhhh-----------cc--chHHHHHHHc--
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSAMV-----------VR--KPAHIFLDEL-- 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~~~-----------~~--~~~~~~l~~~-- 153 (321)
.+||+|||||++|+++|++|+++ |.+|+|||+...+ .|.+...+......+ .. ....+++.++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~ 338 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPA 338 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999 9999999998543 333333222111100 00 0111122211
Q ss_pred -CCC--cccCC----------------------------------------------CeEE----EecHHHHHHHHHHHH
Q 020815 154 -GID--YDEQD----------------------------------------------NYVV----IKHAALFTSTIMSKL 180 (321)
Q Consensus 154 -g~~--~~~~~----------------------------------------------~~~~----~~~~~~~~~~l~~~~ 180 (321)
+.. +...+ .... ..+...+...|++.+
T Consensus 339 ~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a 418 (662)
T PRK01747 339 AGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALA 418 (662)
T ss_pred cCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhc
Confidence 111 11000 0000 123456778888777
Q ss_pred HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
. + |++++++++|+++..+++.+. |.+. ++..++|+.||+|+|..+.
T Consensus 419 ~-~-Gv~i~~~~~V~~i~~~~~~~~-v~t~--------------~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 419 G-Q-QLTIHFGHEVARLEREDDGWQ-LDFA--------------GGTLASAPVVVLANGHDAA 464 (662)
T ss_pred c-c-CcEEEeCCEeeEEEEeCCEEE-EEEC--------------CCcEEECCEEEECCCCCcc
Confidence 6 4 999999999999988777654 4442 1245789999999998763
No 154
>PRK14727 putative mercuric reductase; Provisional
Probab=99.24 E-value=1.2e-10 Score=112.81 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=50.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~ 144 (321)
.|||+|||+|++|+.+|+.|++. |++|+|||+...+||.|++.||++.+.+...
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~ 69 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVGCVPSKILIRA 69 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEeccccccccHHHHHH
Confidence 68999999999999999999999 9999999998789999999999998877654
No 155
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.24 E-value=2.3e-10 Score=113.79 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+...+...|.+.+. +.|++++++++|+++..+ ++++.+|.+.+. .+++..+++||.||+|+|.++
T Consensus 230 dp~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---------~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 230 NDSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---------LTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cHHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---------CCCcEEEEEeCEEEECCCHhH
Confidence 45677778888876 679999999999999887 478888776431 111234789999999999554
No 156
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.24 E-value=9.4e-11 Score=110.36 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=81.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCcccchhhhccchHHHHHH-HcC--C--CcccC----C
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAMVVRKPAHIFLD-ELG--I--DYDEQ----D 161 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~~g~~~~~~~~~~~~~~~l~-~~g--~--~~~~~----~ 161 (321)
||+|||||++|+++|+.|++. |++|+|||+.+..++.. |. +....+.......... .+. . .+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTYG---VWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCcccc---ccHhhhhhhchhhHHhhcCCCceEEecCCcchhcC
Confidence 899999999999999999999 99999999987665432 21 1110000000000111 110 0 00000 1
Q ss_pred CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..+...+...+.+.|.+++. +.|++++.. +++++..+++....|.+.+ +.+++|+.||+|+|..
T Consensus 77 ~~~~~i~~~~l~~~l~~~~~-~~gv~~~~~-~v~~i~~~~~~~~~v~~~~--------------g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 77 TAYGSVDSTRLHEELLQKCP-EGGVLWLER-KAIHAEADGVALSTVYCAG--------------GQRIQARLVIDARGFG 140 (388)
T ss_pred CceeEEcHHHHHHHHHHHHH-hcCcEEEcc-EEEEEEecCCceeEEEeCC--------------CCEEEeCEEEECCCCc
Confidence 11223456788888888887 458998754 7888876644444454421 2589999999999977
Q ss_pred C
Q 020815 242 G 242 (321)
Q Consensus 242 ~ 242 (321)
+
T Consensus 141 s 141 (388)
T TIGR01790 141 P 141 (388)
T ss_pred h
Confidence 6
No 157
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.23 E-value=7.5e-11 Score=113.71 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=80.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHHHHH--cCCCccc-CCCeEE-
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE--LGIDYDE-QDNYVV- 165 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~l~~--~g~~~~~-~~~~~~- 165 (321)
|||+|||||++|+.+|+.|++. |++|+|||+.. .||+|.+.||++.+.+..... .+++.+ +|+.... ..++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 6999999999999999999999 99999999974 899999999999887765432 233332 2221110 001100
Q ss_pred EecHHHHHHHH----HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 166 IKHAALFTSTI----MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 166 ~~~~~~~~~~l----~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
......+...+ ++.+.++.+++++.+. +.. .++.. |.+.. ....+.+|+||+|||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~--~~~~~---v~v~~-------------g~~~~~~~~lIiATGs~ 139 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARF--KDPKT---VKVDL-------------GREVRGAKRFLIATGAR 139 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEE--ccCCE---EEEcC-------------CeEEEEeCEEEEcCCCC
Confidence 01112222222 2233446789988773 221 22332 22211 11468899999999965
Q ss_pred C
Q 020815 242 G 242 (321)
Q Consensus 242 ~ 242 (321)
.
T Consensus 140 p 140 (463)
T TIGR02053 140 P 140 (463)
T ss_pred C
Confidence 4
No 158
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.23 E-value=2.3e-11 Score=103.98 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred EEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCc---ccchhhhc-cchHHHHHHHcCCC----cccCCCeE
Q 020815 94 VVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGG---QLFSAMVV-RKPAHIFLDELGID----YDEQDNYV 164 (321)
Q Consensus 94 vIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g---~~~~~~~~-~~~~~~~l~~~g~~----~~~~~~~~ 164 (321)
+|||||++||++|+.|.+. |.+ |+|||++..+||.+.... .+...... .......+..+..+ +.....+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF- 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS-
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc-
Confidence 6999999999999999999 999 999999988888743110 01000000 00000000000000 0000111
Q ss_pred EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
....++.++|.+.+ ++.+++++++++|+++..++++ .-|.+.. ..+++|+.||+|+|..+.
T Consensus 79 --~~~~~v~~yl~~~~-~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~--------------~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 79 --PSGEEVLDYLQEYA-ERFGLEIRFNTRVESVRRDGDG-WTVTTRD--------------GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp --EBHHHHHHHHHHHH-HHTTGGEETS--EEEEEEETTT-EEEEETT--------------S-EEEEEEEEE---SSCS
T ss_pred --CCHHHHHHHHHHHH-hhcCcccccCCEEEEEEEeccE-EEEEEEe--------------cceeeeeeEEEeeeccCC
Confidence 23455665554444 4678999999999999998876 4455432 258999999999997654
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.23 E-value=1.6e-10 Score=110.73 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=77.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~-~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
+|||+|||||++|+.+|+.|++. |++|+|||+.+ ..||.|.+.+|++.+.+..... ....|... ...
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~~~~~~~-----~~~ 70 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QHTDFVRA-----IQR 70 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cCCCHHHH-----HHH
Confidence 59999999999999999999999 99999999975 4799998888887754432210 01111100 000
Q ss_pred HHHHHH----HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~----~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
...... ...+.+.+..+++++.+ ++..+ +.+.+ .|...+ ...++.+|+||+|||...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~~-~v~~~~-------------g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFI--NNHSL-RVHRPE-------------GNLEIHGEKIFINTGAQT 131 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCcEEEEE-EEEEe--cCCEE-EEEeCC-------------CeEEEEeCEEEEcCCCcC
Confidence 111111 12334444558998876 34333 33322 222211 113699999999999754
No 160
>PRK06753 hypothetical protein; Provisional
Probab=99.22 E-value=3.1e-10 Score=106.25 Aligned_cols=125 Identities=15% Similarity=0.208 Sum_probs=77.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCC---------Ccc----
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---- 158 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~---------~~~---- 158 (321)
||+|||||++|+++|+.|++. |++|+|+||.+.+.... .+ ........+.|+.+|+ +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEVG--AG-----IGIGDNVIKKLGNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc--cc-----eeeChHHHHHHHhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 99999999987553210 01 0111122223333222 111
Q ss_pred --cCCC-----------eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 159 --EQDN-----------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 159 --~~~~-----------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
..+. .....+...+.+.|++.+. +.+++++++++++..+++.+. +... +
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~ 135 (373)
T PRK06753 74 LDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKVT-IHFA--------------D 135 (373)
T ss_pred EcCCCCEEeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcEE-EEEC--------------C
Confidence 0010 1112234556566665542 468999999999987666543 3332 2
Q ss_pred ceEEEcCeEEEcCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~ 242 (321)
+.++++|.||.|+|..+
T Consensus 136 g~~~~~~~vigadG~~S 152 (373)
T PRK06753 136 GESEAFDLCIGADGIHS 152 (373)
T ss_pred CCEEecCEEEECCCcch
Confidence 25789999999999444
No 161
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.22 E-value=5.7e-11 Score=114.46 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=82.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-HHH---HHHHcCCCcccC-CCeEE
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYVV 165 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~~~---~l~~~g~~~~~~-~~~~~ 165 (321)
|||+|||||++|+.+|++|++. |++|+|||+ ..+||.|.+.||++.+.+.... ..+ .+..+|++.... .++..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 8999999999999999999999 999999999 7899999999998887655432 222 244556543211 01000
Q ss_pred E-ecHHHHHHH---HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 166 I-KHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 166 ~-~~~~~~~~~---l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
. .....+... -++.+.++.|++++.+. +.. .+...+ -+.... ...++++|+||+|||..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~--~~~~~~-~v~~~~-------------g~~~~~~d~lVlAtG~~ 142 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKF--LDPGTV-LVTGEN-------------GEETLTAKNIIIATGSR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecCC-------------CcEEEEeCEEEEcCCCC
Confidence 0 000111111 12233446789988773 222 233322 111110 11579999999999975
Q ss_pred C
Q 020815 242 G 242 (321)
Q Consensus 242 ~ 242 (321)
.
T Consensus 143 p 143 (461)
T TIGR01350 143 P 143 (461)
T ss_pred C
Confidence 4
No 162
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.22 E-value=1e-10 Score=112.62 Aligned_cols=66 Identities=30% Similarity=0.410 Sum_probs=53.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch----HHHHHHHcCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDY 157 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~~ 157 (321)
+|||+|||||++|+.+|..|++. |++|+|||+ ...||.|...||++++.+.... ..+.+..+|++.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~ 72 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA 72 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 59999999999999999999999 999999999 5789999989999887665532 223334566543
No 163
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.21 E-value=2.4e-10 Score=111.27 Aligned_cols=136 Identities=24% Similarity=0.338 Sum_probs=88.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc----cCc----ccchhhhcc-chHHHHHHHcCCCcccC-
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----LGG----QLFSAMVVR-KPAHIFLDELGIDYDEQ- 160 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~----~~g----~~~~~~~~~-~~~~~~l~~~g~~~~~~- 160 (321)
|||+|||+|++|+.+|..+++. |.+|+|||+.....|.+. .+| .+...+-.- ....+..+..++.|...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 6999999999999999999999 999999999754333221 011 111111000 01122333333333221
Q ss_pred ---CCeEE----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcC
Q 020815 161 ---DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (321)
Q Consensus 161 ---~~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~ 232 (321)
..... ..+...|...+.+.+.+..|++++.+ .++++..+ ++++.+|.+.+ +..+.|+
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--------------G~~I~Ad 144 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--------------GLKFRAK 144 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------------CCEEECC
Confidence 11111 23456677777788876679999877 78888776 77899998853 2579999
Q ss_pred eEEEcCCCCC
Q 020815 233 VVVSSCGHDG 242 (321)
Q Consensus 233 ~VI~AtG~~~ 242 (321)
.||+|||.+.
T Consensus 145 ~VILATGtfL 154 (617)
T TIGR00136 145 AVIITTGTFL 154 (617)
T ss_pred EEEEccCccc
Confidence 9999999873
No 164
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.21 E-value=2e-10 Score=103.88 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=75.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
|||+|||||++|+++|..|++. |.+|+|||+.. +||..+.... +..+ ..+.......
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~-~gg~~~~~~~--------------~~~~-------~~~~~~~~~~ 57 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME-PGGQLTTTTE--------------VENY-------PGFPEGISGP 57 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC-CCcceeeccc--------------cccc-------CCCCCCCChH
Confidence 6999999999999999999999 99999999985 5554322110 0000 0010011234
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++...+.+.+. +.++++++ ++|+++..+++.+. +... +..++++|+||+|+|...
T Consensus 58 ~~~~~l~~~~~-~~gv~~~~-~~v~~v~~~~~~~~-v~~~--------------~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 58 ELMEKMKEQAV-KFGAEIIY-EEVIKVDLSDRPFK-VKTG--------------DGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHH-HcCCeEEE-EEEEEEEecCCeeE-EEeC--------------CCCEEEeCEEEECCCCCc
Confidence 56666666665 57899988 78988877655332 3321 125799999999999754
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.21 E-value=8.7e-11 Score=113.37 Aligned_cols=53 Identities=30% Similarity=0.417 Sum_probs=48.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~ 144 (321)
+|||+|||||++|+.||+.|++. |++|+|||++ ..||+|.+.||++.+.+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~ 56 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVCLNVGCIPSKALLRN 56 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceecCCccccHHHHhh
Confidence 59999999999999999999999 9999999996 78999999999988766543
No 166
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.20 E-value=6e-11 Score=117.87 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=50.7
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCcccchhhhccch
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKP 145 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~~~gg~~~~~g~~~~~~~~~~~ 145 (321)
.+|||+|||+|++|..+|+.|++. |++|+|||+. ..+||+|.+.||++++.+....
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a 171 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT 171 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence 379999999999999999999999 9999999974 3689999999999999887653
No 167
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=5.2e-11 Score=112.12 Aligned_cols=136 Identities=27% Similarity=0.375 Sum_probs=91.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-cc-------Ccccchhhh-ccchHHHHHHHcCCCcccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WL-------GGQLFSAMV-VRKPAHIFLDELGIDYDEQ 160 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~-~~-------~g~~~~~~~-~~~~~~~~l~~~g~~~~~~ 160 (321)
+|||+|||||.||+.||+++++. |.+++|+-.+...=|.+ ++ -|.+..+.- .....-+..+..++.|...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 59999999999999999999999 99999998653221111 00 011111111 1112334556667766432
Q ss_pred C---CeEE-----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEc
Q 020815 161 D---NYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (321)
Q Consensus 161 ~---~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a 231 (321)
. +..+ ..+...|...+.+.+.+..|+.++.+ .|++|+.+++ +|.||++.. +..+.|
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--------------G~~~~a 147 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--------------GPEFHA 147 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--------------CCeeec
Confidence 1 1111 12334566777777888899999988 8889998777 699999964 378999
Q ss_pred CeEEEcCCCC
Q 020815 232 KVVVSSCGHD 241 (321)
Q Consensus 232 ~~VI~AtG~~ 241 (321)
+.||++||-+
T Consensus 148 ~aVVlTTGTF 157 (621)
T COG0445 148 KAVVLTTGTF 157 (621)
T ss_pred CEEEEeeccc
Confidence 9999999953
No 168
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.19 E-value=8e-10 Score=106.78 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+...+...|.+.+. +.|++++++++|+++..+++ .+. +.+.. . ..++..+++|++||+|+|+++
T Consensus 176 dp~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~---~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------T---RTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------c---cCCceEEEECCEEEECCCcch
Confidence 45677888888887 57999999999999987543 332 33211 0 111235799999999999665
No 169
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.18 E-value=1.9e-10 Score=111.81 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=47.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCcccchhhhccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK 144 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--------~~gg~~~~~g~~~~~~~~~~ 144 (321)
.|||+|||||++|+.||+.|++. |++|+|||+.. .+||.|.+.||++.+.+...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~ 66 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA 66 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceeccccccchHHHHHH
Confidence 58999999999999999999999 99999999631 37999999999998766544
No 170
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=3.3e-10 Score=109.10 Aligned_cols=132 Identities=17% Similarity=0.299 Sum_probs=83.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH----HHHHHHcCCCcccC---CCeE
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ---DNYV 164 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~----~~~l~~~g~~~~~~---~~~~ 164 (321)
+|+|||+|++|+.+|..|++. |++|+|||++ ..||.|.+.||++.+.+.+... .+....+|+.+... .++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 699999999999999999999 9999999997 5899999999999888765422 22334567654211 1111
Q ss_pred EE-ecHHHHHHHH---HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
.. .+.......+ .+...++.+++++.+. +.-+ ++..+. |...+ ...++++|+||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~v~-v~~~~-------------~~~~~~~d~lviATGs 142 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--TDHRVR-VEYGD-------------KEEVVDAEQFIIAAGS 142 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--cCCEEE-EeeCC-------------CcEEEECCEEEEeCCC
Confidence 10 0111111111 2233345688887773 3222 333332 22111 1257999999999997
Q ss_pred CC
Q 020815 241 DG 242 (321)
Q Consensus 241 ~~ 242 (321)
..
T Consensus 143 ~p 144 (458)
T PRK06912 143 EP 144 (458)
T ss_pred CC
Confidence 64
No 171
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.16 E-value=1.6e-09 Score=104.81 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP 126 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~ 126 (321)
.+||+|||||+.|+++|++|++. ++.+|+||||...+
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 58999999999999999999984 48999999997654
No 172
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.16 E-value=3.2e-10 Score=106.34 Aligned_cols=131 Identities=22% Similarity=0.323 Sum_probs=80.4
Q ss_pred cEEEECCChHHHHHHHHh--hcCCCCeEEEEeccCCC--CCc-cccCcccchhhhcc-chH-HHHHHHcCCCcccC----
Q 020815 92 DVVVVGAGSAGLSCAYEL--SKNPNIQIAIIEQSVSP--GGG-AWLGGQLFSAMVVR-KPA-HIFLDELGIDYDEQ---- 160 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~L--a~~~G~~V~liEk~~~~--gg~-~~~~g~~~~~~~~~-~~~-~~~l~~~g~~~~~~---- 160 (321)
||||||||+||+++|++| ++. |.+|+|||+.... ... +| +........ ... ...+..+-+.+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW---~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW---CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc---ccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 777 9999999998765 222 22 111111100 000 01111111111111
Q ss_pred -CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 161 -DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 161 -~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
...+...+...|.+.+.+++. ..++ ++.+..|++|..+++. ..|.+. ++.+++|+.||+|+|
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~-~~~~-~~~~~~V~~i~~~~~~-~~v~~~--------------~g~~i~a~~VvDa~g 139 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAA-AGGV-IRLNARVTSIEETGDG-VLVVLA--------------DGRTIRARVVVDARG 139 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhh-hCCe-EEEccEEEEEEecCce-EEEEEC--------------CCCEEEeeEEEECCC
Confidence 112334567888889888886 5554 5566799998876662 233332 236899999999999
Q ss_pred CCCC
Q 020815 240 HDGP 243 (321)
Q Consensus 240 ~~~~ 243 (321)
..+.
T Consensus 140 ~~~~ 143 (374)
T PF05834_consen 140 PSSP 143 (374)
T ss_pred cccc
Confidence 5443
No 173
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.16 E-value=6.2e-10 Score=107.48 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHcC---CC--cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLAR---PN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~---~g--v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+...+.+.|.+.+.+. .| ++++++++|++|..+++.+..|.+.. .+++|++||+|+|+++
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~---------------G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR---------------GEIRARFVVVSACGYS 273 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC---------------CEEEeCEEEECcChhH
Confidence 4456777887777631 45 88999999999988766666666532 4799999999999665
No 174
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.16 E-value=2.7e-10 Score=100.73 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=94.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC------cc------------------------------
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG------GQ------------------------------ 135 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~------g~------------------------------ 135 (321)
.|||||+|.|||+++..+-.. |-.|+|+|+....||++... .+
T Consensus 11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 699999999999999999987 66699999999999876421 10
Q ss_pred -cchhhhcc-chHHHHHHH-cCCCcccCC--------CeE----EEecHHHHHHHHHHHH----HcCC-CcEEEcCceEE
Q 020815 136 -LFSAMVVR-KPAHIFLDE-LGIDYDEQD--------NYV----VIKHAALFTSTIMSKL----LARP-NVKLFNAVAAE 195 (321)
Q Consensus 136 -~~~~~~~~-~~~~~~l~~-~g~~~~~~~--------~~~----~~~~~~~~~~~l~~~~----~~~~-gv~i~~~~~v~ 195 (321)
+...+..+ ...++||+. +++..+... +-. ......++...|..++ .+++ -++|..+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 00011111 235678865 666544310 000 0011233444444333 2222 37899999999
Q ss_pred EEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 196 ~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+|..++++|.||+..+ .+|+...+.++.||+|+||++.
T Consensus 170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcCc
Confidence 9999999999998854 3345578899999999999984
No 175
>PRK07846 mycothione reductase; Reviewed
Probab=99.14 E-value=2.5e-10 Score=109.58 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=79.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HHH---HHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~~---l~~~g~~~~~~-~~~~ 164 (321)
+|||+|||+|++|..+|..+ . |++|+|||+. ..||+|.+.||++++.+..... .+. ..++|+..... -++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 38999999999999988763 6 9999999995 6899999999999998776532 222 33466542211 0111
Q ss_pred E-EecHHHHHHHHH----HHH-HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 165 V-IKHAALFTSTIM----SKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 165 ~-~~~~~~~~~~l~----~~~-~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
. ..+.....+.+. +.. .+..|++++.+... - .++..| .+. ++.++++|++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~--~~~~~V---~v~--------------~g~~~~~d~lViAT 136 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-F--IGPKTL---RTG--------------DGEEITADQVVIAA 136 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-E--ecCCEE---EEC--------------CCCEEEeCEEEEcC
Confidence 0 011111222221 111 33567888877322 1 233432 221 12479999999999
Q ss_pred CCCC
Q 020815 239 GHDG 242 (321)
Q Consensus 239 G~~~ 242 (321)
|...
T Consensus 137 Gs~p 140 (451)
T PRK07846 137 GSRP 140 (451)
T ss_pred CCCC
Confidence 9754
No 176
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.11 E-value=9.4e-10 Score=99.73 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCcEEEcCceEEEEEEE--CCEEEEEEEeecceecccCCCCCCC--ceEEEcCeEEEcCCCCC
Q 020815 175 TIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMD--PNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 175 ~l~~~~~~~~gv~i~~~~~v~~l~~~--~~~v~gv~~~~~~~~~~~~~~~~g~--~~~i~a~~VI~AtG~~~ 242 (321)
.++..+.+..|++|+.+++|++|+.+ ++++++|...+. ++. ...+.+|.||+|.|+.+
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~----------~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN----------DGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET----------TTSEEEEEEEEEEEEE-SHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec----------CCcceeeeccceeEEeccCCCC
Confidence 33445555679999999999999886 789999998652 112 35788899999999544
No 177
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.11 E-value=1.6e-09 Score=105.38 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..+.+.|.+.++ +.|++|+.+++|++|..+++++.+|++.+ +.++.|+.||+|+|..
T Consensus 229 ~~l~~~L~~~~~-~~G~~i~~~~~V~~I~~~~~~~~gv~~~~--------------g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLE-KHGGQIRYRARVTKIILENGKAVGVKLAD--------------GEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHH-HCCCEEEeCCeeeEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCChH
Confidence 355667666665 67999999999999999888899988743 2578999999999843
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.09 E-value=1.2e-09 Score=106.71 Aligned_cols=113 Identities=21% Similarity=0.279 Sum_probs=78.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
..|||+|||||++|++||.+|++. |++|+|||+. +||.+...-. +-.-.+++ ...
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~--~GG~~~~~~~-------------~~~~~~~~---------~~~ 264 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER--FGGQVLDTMG-------------IENFISVP---------ETE 264 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC--CCCeeeccCc-------------ccccCCCC---------CCC
Confidence 469999999999999999999999 9999999874 5664321000 00000111 123
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..++.+.+.+.+. +.|++++.+++|+++..+++.. .+.+. ++.+++++.||+|||...
T Consensus 265 ~~~l~~~l~~~~~-~~gv~i~~~~~V~~I~~~~~~~-~V~~~--------------~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 265 GPKLAAALEEHVK-EYDVDIMNLQRASKLEPAAGLI-EVELA--------------NGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEcCEEEECCCCCc
Confidence 4567777777776 5789999999999998765432 23332 125799999999999754
No 179
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.09 E-value=2.9e-09 Score=102.62 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP 126 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~ 126 (321)
..+||||||||++|+++|+.|++. |+.+|+|+||.+.+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 368999999999999999999984 58999999994344
No 180
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.08 E-value=1e-09 Score=105.92 Aligned_cols=134 Identities=21% Similarity=0.314 Sum_probs=85.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccch-H---HHHHHHcCCCccc----CCCe
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---HIFLDELGIDYDE----QDNY 163 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~-~---~~~l~~~g~~~~~----~~~~ 163 (321)
||+|||+|++|+.+|..|++. |.+|+|||+. ..||.|.+.||++.+.+.... . .+....+|+.... .-++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 899999999999999999999 9999999997 589999999999988765542 2 2334456665421 0111
Q ss_pred EEE-ecHHHH----HHHHHHHHHcCCCcEEEcCceEEEEE--EECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815 164 VVI-KHAALF----TSTIMSKLLARPNVKLFNAVAAEDLI--VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (321)
Q Consensus 164 ~~~-~~~~~~----~~~l~~~~~~~~gv~i~~~~~v~~l~--~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~ 236 (321)
... .+...+ ...+.+.+. ..|++++.+ +++.+. .+++.+. |... +|+..++.+|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~~~g-~~~~~~~~~~~~~v~-V~~~------------~g~~~~~~~d~lVi 145 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLE-REGVRVIAG-RGRLIDPGLGPHRVK-VTTA------------DGGEETLDADVVLI 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEE-EEEEeecccCCCEEE-EEeC------------CCceEEEecCEEEE
Confidence 110 111111 223333343 579999988 343332 2333322 2221 11224799999999
Q ss_pred cCCCCC
Q 020815 237 SCGHDG 242 (321)
Q Consensus 237 AtG~~~ 242 (321)
|||...
T Consensus 146 ATGs~p 151 (466)
T PRK07845 146 ATGASP 151 (466)
T ss_pred cCCCCC
Confidence 999765
No 181
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.06 E-value=3.9e-09 Score=100.36 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=75.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCC-------------c
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------Y 157 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~-------------~ 157 (321)
+|+|||||++||++|+.|++. | ++|+|+||.+..+... .. +.......+.|+++|+. +
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~G---~g----i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEVG---AG----VSFGANAVRAIVGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCCc---cc----eeeCccHHHHHHHcCChhHHHHHhcCCCccC
Confidence 699999999999999999998 6 6999999987653210 00 01111222333333321 0
Q ss_pred c-------c-C-CCeE----------EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceeccc
Q 020815 158 D-------E-Q-DNYV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (321)
Q Consensus 158 ~-------~-~-~~~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~ 218 (321)
. . . ..+. ...+...+.+.|++.+ .+..++++++|+++..+++.+. +...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~~-v~~~-------- 141 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEVQ-VLFT-------- 141 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcEE-EEEc--------
Confidence 0 0 0 0000 0123445556665544 2466888999999987666532 3332
Q ss_pred CCCCCCCceEEEcCeEEEcCCCCC
Q 020815 219 DTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 219 ~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.++++|.||+|+|..+
T Consensus 142 ------~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 142 ------DGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ------CCCEEEeeEEEECCCccH
Confidence 125799999999999544
No 182
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.05 E-value=2e-09 Score=105.96 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=73.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.|||+|||||+||++||+.|++. |++|+|||++ ..||.+........ ..+.. ....
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~-~~GG~~~~~~~i~~-------------~pg~~---------~~~~ 59 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKD-DFGGQITITSEVVN-------------YPGIL---------NTTG 59 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCceEEecccccc-------------CCCCc---------CCCH
Confidence 48999999999999999999999 9999999996 56665432111000 00000 1123
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..+...+.+.+. +.|++++ .++|+.+..+++ ...+.+.. ..+.++.||+|||...
T Consensus 60 ~~l~~~l~~~~~-~~gv~~~-~~~V~~i~~~~~-~~~V~~~~---------------g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 60 PELMQEMRQQAQ-DFGVKFL-QAEVLDVDFDGD-IKTIKTAR---------------GDYKTLAVLIATGASP 114 (555)
T ss_pred HHHHHHHHHHHH-HcCCEEe-ccEEEEEEecCC-EEEEEecC---------------CEEEEeEEEECCCCcc
Confidence 456666666654 5789986 557888765443 33333321 3588999999999865
No 183
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.04 E-value=2.3e-09 Score=103.09 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=78.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchH-HH---HHHHcCCCcccC-CCeE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDEQ-DNYV 164 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~-~~---~l~~~g~~~~~~-~~~~ 164 (321)
+|||+|||+|++|..+|.. .. |++|+|||+. ..||+|.+.||++.+.+..... .+ ...++|+..... -+|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 5899999999999998654 36 9999999985 6899999999999998876532 22 334456532110 0111
Q ss_pred EEecH-HH-HHHHHH----HHHH--cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEE
Q 020815 165 VIKHA-AL-FTSTIM----SKLL--ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (321)
Q Consensus 165 ~~~~~-~~-~~~~l~----~~~~--~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~ 236 (321)
..... .. ..+.+. .... +..|++++.++.+.. +..++ .+. ++.++++|+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V---~~~--------------~g~~~~~d~lIi 137 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTL---RTG--------------DGEEITGDQIVI 137 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEE---EEC--------------CCcEEEeCEEEE
Confidence 10000 01 111111 1111 236888888754322 33322 221 124689999999
Q ss_pred cCCCCC
Q 020815 237 SCGHDG 242 (321)
Q Consensus 237 AtG~~~ 242 (321)
|||...
T Consensus 138 ATGs~p 143 (452)
T TIGR03452 138 AAGSRP 143 (452)
T ss_pred EECCCC
Confidence 999765
No 184
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=1.8e-09 Score=106.54 Aligned_cols=131 Identities=16% Similarity=0.267 Sum_probs=91.3
Q ss_pred HHHHHHhhcCCCCeEEEEeccCCCCCcccc-Cccc------------ch----h---------------hhcc--chHHH
Q 020815 103 LSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL------------FS----A---------------MVVR--KPAHI 148 (321)
Q Consensus 103 l~aA~~La~~~G~~V~liEk~~~~gg~~~~-~g~~------------~~----~---------------~~~~--~~~~~ 148 (321)
|+||+.+++. |.+|+||||....++++.. +|.+ +. . .+.. ...++
T Consensus 1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~ 79 (570)
T PRK05675 1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF 79 (570)
T ss_pred ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999998 9999999998766655321 1111 00 0 0000 13568
Q ss_pred HHHHcCCCcccCCC--eE------------------EE-----ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CC
Q 020815 149 FLDELGIDYDEQDN--YV------------------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GG 202 (321)
Q Consensus 149 ~l~~~g~~~~~~~~--~~------------------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~ 202 (321)
||+++|++|+...+ +. .. ..+..+...|.+++. +.||+++.++.+++|+.+ ++
T Consensus 80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g 158 (570)
T PRK05675 80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG 158 (570)
T ss_pred HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence 99999999976321 10 00 124567888888876 679999999999999985 68
Q ss_pred EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+|.||...+. .+++...|.||.||+||||++..
T Consensus 159 ~v~Gv~~~~~---------~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 159 AVVGVIAICI---------ETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred eEEEEEEEEc---------CCCcEEEEecCeEEECCCCcccc
Confidence 9999987421 12345789999999999998843
No 185
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.04 E-value=2.2e-09 Score=100.86 Aligned_cols=39 Identities=36% Similarity=0.703 Sum_probs=34.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
++||+|||||++|+++|++|++. |.+|+|+|+....+|+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~g~ 42 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGA 42 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCCcc
Confidence 58999999999999999999999 9999999998755433
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.04 E-value=3.4e-09 Score=103.48 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (321)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 167 (321)
...|||+|||||++|++||+.|++. |++|+|||. .+||.+...-. +-.-.+.+ ..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~-------------~~~~~~~~---------~~ 264 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVG-------------IENLISVP---------YT 264 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcC-------------cccccccC---------CC
Confidence 3469999999999999999999999 999999985 35554321000 00000111 01
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
....+...+.+.+. +.|++++.+++|+++..+++.. .+.+. ++.++.+|.+|+|+|...
T Consensus 265 ~~~~l~~~l~~~l~-~~gv~i~~~~~V~~I~~~~~~~-~v~~~--------------~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIK-QYPIDLMENQRAKKIETEDGLI-VVTLE--------------SGEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHH-HhCCeEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEeCEEEECCCCCc
Confidence 23556677777766 5699999999999987665432 23332 125799999999999753
No 187
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=3.4e-09 Score=102.75 Aligned_cols=40 Identities=38% Similarity=0.612 Sum_probs=37.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.+||||||||+.||+||..|++. |++|+|+||+..+||.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcce
Confidence 58999999999999999999999 99999999999988754
No 188
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=94.21 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE--ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV--KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~--~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
++....+.+.+.++ +.|+.++.+.+|+.+.. +++..+.|++.+ +..+.||.+|+++|++
T Consensus 151 ~a~kslk~~~~~~~-~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~--------------gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 151 NAAKSLKALQDKAR-ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD--------------GSIYHAKKIIFTVGAW 211 (399)
T ss_pred eHHHHHHHHHHHHH-HcCeEEecCcceeeEeeccCCCceeEEEecc--------------CCeeecceEEEEecHH
Confidence 44566677777776 78999999999887765 356667777753 3569999999999943
No 189
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.01 E-value=8.5e-09 Score=99.83 Aligned_cols=41 Identities=32% Similarity=0.568 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~ 130 (321)
..+++|||||++||+||++|++. +|.+|+|+|+.+.+||.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 36899999999999999999985 378999999999998875
No 190
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.01 E-value=6.7e-09 Score=101.23 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
..+.+.|.+.+. +.|++|+.++.|++|..+++++++|++.+ +.++.||.||+|++.
T Consensus 219 ~~l~~al~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~V~~~~--------------g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAE-DLGGELRLNAEVIRIETEGGRATAVHLAD--------------GERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCeEEEEEeeCCEEEEEEECC--------------CCEEECCEEEECCcH
Confidence 345566666665 67999999999999998888888887743 257899999999883
No 191
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.01 E-value=1.2e-08 Score=101.03 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=78.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCcccchhhhccchHHHHHHHcCC------------
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFSAMVVRKPAHIFLDELGI------------ 155 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~-gg~~~~~g~~~~~~~~~~~~~~~l~~~g~------------ 155 (321)
..++|+|||||++|+++|+.|++. |++|+|+|+.... .+..+.++. +.......+.|+++|+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~~~----I~L~pngl~aLe~LGl~~~e~l~~~g~~ 154 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYRGP----IQIQSNALAALEAIDIDVAEQVMEAGCI 154 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccCcc----cccCHHHHHHHHHcCcchHHHHHhhcCc
Confidence 358999999999999999999999 9999999997521 111000000 1111112222222221
Q ss_pred ------------------Cccc-----CC--CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815 156 ------------------DYDE-----QD--NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (321)
Q Consensus 156 ------------------~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~ 210 (321)
.++. .. .+....+...+.+.|.+.+. ...++++++|+++..+++.+. +.+.
T Consensus 155 ~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~Vt-V~~~ 230 (668)
T PLN02927 155 TGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDKVT-VVLE 230 (668)
T ss_pred ccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCEEE-EEEC
Confidence 0000 00 11123345556666654432 123678889999988777665 4432
Q ss_pred ecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
++.++++|.||.|+|.++..
T Consensus 231 --------------dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 231 --------------NGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred --------------CCCEEEcCEEEECCCCCcHH
Confidence 12578999999999976643
No 192
>PRK10262 thioredoxin reductase; Provisional
Probab=99.01 E-value=5.3e-09 Score=96.03 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=71.4
Q ss_pred CCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (321)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 167 (321)
...+||+|||||++|++||+.|++. |.++++||+. ..||.+...... .+++.. ....
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~-~~gg~~~~~~~~----------------~~~~~~-----~~~~ 60 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEV----------------ENWPGD-----PNDL 60 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee-cCCCceecCceE----------------CCCCCC-----CCCC
Confidence 3478999999999999999999999 9999999965 456543221110 011110 0011
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
....+.+.+.+.+. ..+++++.+ +++.+...++.+. +.. +...+.+|.||+|||...
T Consensus 61 ~~~~~~~~~~~~~~-~~~~~~~~~-~v~~v~~~~~~~~-v~~---------------~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 61 TGPLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPFR-LTG---------------DSGEYTCDALIIATGASA 117 (321)
T ss_pred CHHHHHHHHHHHHH-HCCCEEEee-EEEEEEecCCeEE-EEe---------------cCCEEEECEEEECCCCCC
Confidence 23445555555554 456677665 5666665555322 111 113689999999999764
No 193
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.3e-09 Score=92.32 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=84.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEecc-C-------CCCCccccCcccchhhhccch----HHHHHHHcCCC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-V-------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID 156 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~-~-------~~gg~~~~~g~~~~~~~~~~~----~~~~l~~~g~~ 156 (321)
.+||+||||||.+||+||-+++.. |.+|.++|-- + ..||+|.+.||++.+++.... .++....+|+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 479999999999999999999999 9999999942 1 247888888999988876653 34555677877
Q ss_pred cccCCCeEEEec-HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecceecccCCCCCCCceEEEcCe
Q 020815 157 YDEQDNYVVIKH-AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV 233 (321)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~ 233 (321)
.+... +.| =..+.+.+.+++. ..|--++..-+-..+.+.+ +.+++-.. +...+ ..++...+.|+.
T Consensus 97 ~~e~~----ikhdW~~l~~sVqnhI~-s~NW~yRv~LreKkV~Y~NsygeFv~~h~---I~at~----~~gk~~~~ta~~ 164 (503)
T KOG4716|consen 97 VDEQK----IKHDWNKLVKSVQNHIK-SLNWGYRVQLREKKVEYINSYGEFVDPHK---IKATN----KKGKERFLTAEN 164 (503)
T ss_pred Ccccc----ccccHHHHHHHHHHHhh-hccceEEEEeccceeeeeecceeecccce---EEEec----CCCceEEeecce
Confidence 65431 111 1234455555553 2221111111111222221 11111000 00011 122457899999
Q ss_pred EEEcCCCCCC
Q 020815 234 VVSSCGHDGP 243 (321)
Q Consensus 234 VI~AtG~~~~ 243 (321)
+|+|+|.+..
T Consensus 165 fvIatG~RPr 174 (503)
T KOG4716|consen 165 FVIATGLRPR 174 (503)
T ss_pred EEEEecCCCC
Confidence 9999997664
No 194
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.3e-09 Score=100.89 Aligned_cols=136 Identities=24% Similarity=0.323 Sum_probs=85.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC-CCCccc-------cCcccchhhh-ccchHHHHHHHcCCCcccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAW-------LGGQLFSAMV-VRKPAHIFLDELGIDYDEQ 160 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~-~gg~~~-------~~g~~~~~~~-~~~~~~~~l~~~g~~~~~~ 160 (321)
.|||||||||.||+.||.++++. |.+++|+..+-. +|--+. .-|.+..+.- ...-..+..+..++.|.-.
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 69999999999999999999999 999999987532 221110 0111111111 1111223444455544321
Q ss_pred ---CCeEE-----EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCE-----EEEEEEeecceecccCCCCCCCce
Q 020815 161 ---DNYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-----VGGVVTNWALVSMNHDTQSCMDPN 227 (321)
Q Consensus 161 ---~~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~-----v~gv~~~~~~~~~~~~~~~~g~~~ 227 (321)
.+..+ ..+.+.|...+.+.+...++.+|+.+ .|.+|+..++. |.||...+ +.
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d--------------gt 171 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD--------------GT 171 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec--------------Cc
Confidence 11112 22345566666666666688999988 78888876433 78888754 37
Q ss_pred EEEcCeEEEcCCCC
Q 020815 228 VMEAKVVVSSCGHD 241 (321)
Q Consensus 228 ~i~a~~VI~AtG~~ 241 (321)
.+.|+.||+.||-+
T Consensus 172 ~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 172 VVYAESVILTTGTF 185 (679)
T ss_pred EeccceEEEeeccc
Confidence 89999999999953
No 195
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.98 E-value=4.2e-09 Score=101.12 Aligned_cols=136 Identities=23% Similarity=0.357 Sum_probs=92.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccc------------hHHHHHHHcCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRK------------PAHIFLDELGID 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~------------~~~~~l~~~g~~ 156 (321)
..||+|||||.+|+.+||+|++. |.+ .+++|+.....|++|....+........ -..+..++.|++
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~ 117 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH 117 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHc-cccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999999999 998 5566666666677666544332211110 011223344443
Q ss_pred --cccCCCeEE------------------------------------------------------EecHHHHHHHHHHHH
Q 020815 157 --YDEQDNYVV------------------------------------------------------IKHAALFTSTIMSKL 180 (321)
Q Consensus 157 --~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~~ 180 (321)
|...+...+ ..+...+...|...+
T Consensus 118 tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A 197 (856)
T KOG2844|consen 118 TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA 197 (856)
T ss_pred cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHH
Confidence 222221111 223455667766666
Q ss_pred HcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
. +.|+.|++++.|++|..+.+++.+|.+.. ..|++.+||.|+|-++
T Consensus 198 ~-~~GA~viE~cpV~~i~~~~~~~~gVeT~~---------------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 198 S-ALGALVIENCPVTGLHVETDKFGGVETPH---------------GSIETECVVNAAGVWA 243 (856)
T ss_pred H-hcCcEEEecCCcceEEeecCCccceeccC---------------cceecceEEechhHHH
Confidence 5 78999999999999999888888998853 5799999999999554
No 196
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.98 E-value=4.7e-09 Score=100.73 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=48.8
Q ss_pred CeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
.+.+..+...|.+.|.+.+. +.|++++.+ +|+++..+ ++.+..|.+.+ +.+++||+||+|+|.
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~-~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--------------g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAE-ERGVEVIEG-TVVDVELDEDGRITAVRLDD--------------GRTIEADFFIDASGR 209 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEETT--------------SEEEEESEEEE-SGG
T ss_pred CeeEEEeHHHHHHHHHHHHh-cCCCEEEeC-EEEEEEEcCCCCEEEEEECC--------------CCEEEEeEEEECCCc
Confidence 45556677889999988887 569999998 57777765 57788888743 378999999999997
Q ss_pred CCCCc
Q 020815 241 DGPFG 245 (321)
Q Consensus 241 ~~~~~ 245 (321)
.+.+.
T Consensus 210 ~s~L~ 214 (454)
T PF04820_consen 210 RSLLA 214 (454)
T ss_dssp G-CCC
T ss_pred cchhh
Confidence 66554
No 197
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.97 E-value=1e-08 Score=107.25 Aligned_cols=124 Identities=24% Similarity=0.285 Sum_probs=77.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.+||+|||||+||++||+.|++. |++|+|+|+...+||..+... . .++ ....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~------------------~--~~~-------g~~~ 214 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEA------------------E--TID-------GKPA 214 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeeccc------------------c--ccC-------CccH
Confidence 58999999999999999999999 999999999988777543210 0 000 0123
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.++...+.+++.+..+++++.+++|..+. +++.+..+....................+++++.||+|||...
T Consensus 215 ~~~~~~~~~~l~~~~~v~v~~~t~V~~i~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 215 ADWAAATVAELTAMPEVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCEEEEEe-cCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 45555667777655579999999998773 2333332221110000000000000123789999999999754
No 198
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.97 E-value=2.3e-09 Score=104.42 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=79.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-------ccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAHIFLDELGIDYDEQDNYV 164 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 164 (321)
.|+|||||++||++|..|.+. |++++++||.+.+||.+.... ..++.+..+. ..+.+.-..+++. ++++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~-sk~~~~fsdfp~p--~~~p 78 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNT-SKEMMAFSDFPFP--EDYP 78 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS--GGGSCCTTS-HC--CCCS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEee-CchHhcCCCcCCC--CCCC
Confidence 699999999999999999999 999999999999998743221 1111111110 0000000112222 2333
Q ss_pred EEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEECC-E---EEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 165 VIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-R---VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~~-~---v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
...+..++.++|.+.+. +.++ .|.++++|+++...++ . -.-|.+. .++...+-..|.||+|+
T Consensus 79 ~f~~~~~v~~Yl~~Ya~-~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-----------~~g~~~~~~fD~Vvvat 146 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAE-HFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-----------NDGKEETEEFDAVVVAT 146 (531)
T ss_dssp SSEBHHHHHHHHHHHHH-HTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-----------TTTEEEEEEECEEEEEE
T ss_pred CCCCHHHHHHHHHHHHh-hhCCcceEEEccEEeEeeeccccCCCceEEEEee-----------cCCeEEEEEeCeEEEcC
Confidence 34456777777666664 4555 5899999999987643 1 1222221 11233455679999999
Q ss_pred CCCCCC
Q 020815 239 GHDGPF 244 (321)
Q Consensus 239 G~~~~~ 244 (321)
|.++.+
T Consensus 147 G~~~~P 152 (531)
T PF00743_consen 147 GHFSKP 152 (531)
T ss_dssp -SSSCE
T ss_pred CCcCCC
Confidence 987643
No 199
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.96 E-value=1.7e-09 Score=101.51 Aligned_cols=45 Identities=22% Similarity=0.534 Sum_probs=39.4
Q ss_pred cccCCcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 85 MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.....+|||+|||||..|..||+-++-+ |+||.|+|+++...|++
T Consensus 62 l~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 62 LKSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTS 106 (680)
T ss_pred hhcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCcc
Confidence 3444579999999999999999999999 99999999998776665
No 200
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.96 E-value=1e-08 Score=91.37 Aligned_cols=152 Identities=26% Similarity=0.346 Sum_probs=92.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC--CCCCcc-ccCcccch----------------------------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGA-WLGGQLFS---------------------------- 138 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~--~~gg~~-~~~g~~~~---------------------------- 138 (321)
++||||||+|.+||.+|.+|+.. |++|+|+|+.. ..||.. |.-|.++-
T Consensus 5 ~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 68999999999999999999999 99999999864 344433 33222110
Q ss_pred ----hhhcc-----------chHHHHHHHcCCCcccC------------------CCeEE-Eec----HHHHHHHHHHHH
Q 020815 139 ----AMVVR-----------KPAHIFLDELGIDYDEQ------------------DNYVV-IKH----AALFTSTIMSKL 180 (321)
Q Consensus 139 ----~~~~~-----------~~~~~~l~~~g~~~~~~------------------~~~~~-~~~----~~~~~~~l~~~~ 180 (321)
....+ .+...||...|+.|-.. +.+.+ +.. -..|.+.+.+..
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~ 163 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQ 163 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHH
Confidence 00000 01234555556543211 11111 111 134556655544
Q ss_pred HcCCCcEEEcCceEEEEEEECCEEEEEEEeec-ceecccCCCCC---CCceEEEcCeEEEcCCCCCC
Q 020815 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSC---MDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 181 ~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~-~~~~~~~~~~~---g~~~~i~a~~VI~AtG~~~~ 243 (321)
. ..-+++.+.++|..+...+++|+||.-.-- ..........+ ....+++|..||+++|+.+.
T Consensus 164 ~-~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGG 229 (552)
T COG3573 164 R-RGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGG 229 (552)
T ss_pred h-CCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCC
Confidence 3 677999999999999999999999864210 00000000000 01257899999999999873
No 201
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.95 E-value=1.5e-08 Score=98.59 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=36.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g 134 (321)
|||+|||+|++|+.+|+.|++. |++|+|||++...|+ .|.++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~-~~~g~ 42 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSF-LKIGA 42 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCC-Ccccc
Confidence 6999999999999999999999 999999999987763 44343
No 202
>PRK07233 hypothetical protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=95.89 Aligned_cols=38 Identities=37% Similarity=0.647 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|+|||||++||+||+.|++. |++|+|+|+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence 589999999999999999999 99999999999998865
No 203
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.2e-08 Score=96.93 Aligned_cols=138 Identities=18% Similarity=0.169 Sum_probs=85.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCc-------ccchhhhccchHHHHHHHcCCCcccCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-------QLFSAMVVRKPAHIFLDELGIDYDEQDN 162 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 162 (321)
.-+|+|||||++||++|..|.+. |++|+++||...+||-+.... .+++.+..+ -..+.+.-..++|....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn-~pKe~~~~~dfpf~~~~- 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTN-LPKEMMGYSDFPFPERD- 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccceEeecCcccccccchhhhhhcc-CChhhhcCCCCCCcccC-
Confidence 35999999999999999999999 999999999999988643210 111111111 11122222334444331
Q ss_pred eEEEecHHHHHHHHHHHHHcCCCc--EEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
-....+..++.++|.+-+. +.++ .|.+++++..+...+ ++. .|...+ ..+ ...+..+|.||+|+|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~-~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~------~~~----~~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAK-HFDLLKMINFNTEVVRVDSIDKGKW-RVTTKD------NGT----QIEEEIFDAVVVCTG 150 (448)
T ss_pred cccCCCHHHHHHHHHHHHH-hcChhhheEecccEEEEeeccCCce-eEEEec------CCc----ceeEEEeeEEEEccc
Confidence 1112344577777666554 6665 688888888887665 433 333321 111 135778999999999
Q ss_pred CCC
Q 020815 240 HDG 242 (321)
Q Consensus 240 ~~~ 242 (321)
++-
T Consensus 151 h~~ 153 (448)
T KOG1399|consen 151 HYV 153 (448)
T ss_pred CcC
Confidence 883
No 204
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.91 E-value=5.2e-08 Score=94.77 Aligned_cols=39 Identities=49% Similarity=0.762 Sum_probs=36.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.||||||||++||+||..|++. |++|+|+|++..+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence 4899999999999999999999 99999999999888654
No 205
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.91 E-value=6.6e-08 Score=91.60 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+.|.+.+. +.|++++.+++|.++..+++++..+.... +....++||.||+|+|.+..
T Consensus 260 rL~~aL~~~l~-~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~------------g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 260 RLQNALRRAFE-RLGGRIMPGDEVLGAEFEGGRVTAVWTRN------------HGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEeeC------------CceEEEECCEEEEeCCCccc
Confidence 34455666665 67999999999999998888776665421 23367999999999997643
No 206
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.90 E-value=1e-08 Score=96.04 Aligned_cols=124 Identities=22% Similarity=0.371 Sum_probs=75.6
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCc-cccCcccchhhhccchHHHHHHHc-CCCccc-------C-
Q 020815 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLDEL-GIDYDE-------Q- 160 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~-~~~~g~~~~~~~~~~~~~~~l~~~-g~~~~~-------~- 160 (321)
||+|||||++|+++|++|++. +|++|+|||+.+..++. .|. +...-. ......+++.+ ...|.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~---~~~~~~-~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS---FFDSDL-SDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce---eccccc-chhhhhhhhhhheEeCCCCEEECcchh
Confidence 899999999999999999973 58999999998766653 331 111000 11111122211 111110 0
Q ss_pred ---CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815 161 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (321)
Q Consensus 161 ---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A 237 (321)
...+...+..+|.+.+++++. .+ ++.+++|+++ +++. |.+. ++.+++|+.||.|
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~---v~l~--------------dg~~~~A~~VI~A 133 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADG---VDLA--------------PGTRINARSVIDC 133 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCE---EEEC--------------CCCEEEeeEEEEC
Confidence 112344566778788776653 23 6668888877 4443 3332 2368999999999
Q ss_pred CCCCC
Q 020815 238 CGHDG 242 (321)
Q Consensus 238 tG~~~ 242 (321)
+|..+
T Consensus 134 ~G~~s 138 (370)
T TIGR01789 134 RGFKP 138 (370)
T ss_pred CCCCC
Confidence 99665
No 207
>PRK09897 hypothetical protein; Provisional
Probab=98.90 E-value=2.5e-08 Score=96.97 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=81.1
Q ss_pred ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCc-cccCcccchhhhc----------cchHHHHHH-------
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG-AWLGGQLFSAMVV----------RKPAHIFLD------- 151 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~-~~~~g~~~~~~~~----------~~~~~~~l~------- 151 (321)
.+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+ .|........++. .....+|+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4799999999999999999874 14699999998777743 3433211110110 112334443
Q ss_pred -HcCCCcccC--CCeE-EEecH---HHHHHHHHHHHHcCCC--cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCC
Q 020815 152 -ELGIDYDEQ--DNYV-VIKHA---ALFTSTIMSKLLARPN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS 222 (321)
Q Consensus 152 -~~g~~~~~~--~~~~-~~~~~---~~~~~~l~~~~~~~~g--v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~ 222 (321)
+++++.... ..|. ....+ ......+.+.+. ..| ++++.+++|+++..+++.+. +.+..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~----------- 148 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ----------- 148 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC-----------
Confidence 234433221 1222 12222 223333444443 344 78888999999988776533 33311
Q ss_pred CCCceEEEcCeEEEcCCCCCC
Q 020815 223 CMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 223 ~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+..+.+|.||+|+|+..+
T Consensus 149 --gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 149 --DLPSETFDLAVIATGHVWP 167 (534)
T ss_pred --CCeEEEcCEEEECCCCCCC
Confidence 1257899999999997543
No 208
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.89 E-value=4.3e-08 Score=93.46 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=38.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
+|||||||+|.+|+.+|..|++. |+||+++|+++..||.++
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcccc
Confidence 69999999999999999999999 999999999998887653
No 209
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.88 E-value=1e-08 Score=94.08 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=76.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccch--hhhccchHHHHHHHcCCCcccC-------C
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS--AMVVRKPAHIFLDELGIDYDEQ-------D 161 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~--~~~~~~~~~~~l~~~g~~~~~~-------~ 161 (321)
-+|+|||||++|+++|+.|.+. |++|+|+|+...+.+....-+-..+ ..+..-...+++.+.+++.... +
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 4899999999999999999999 9999999998766544110000011 0011111335666777765422 1
Q ss_pred CeEE-E---ec--------HHHHHHHHHHHHHcCCCcEEEcCce----EEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 162 NYVV-I---KH--------AALFTSTIMSKLLARPNVKLFNAVA----AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 162 ~~~~-~---~~--------~~~~~~~l~~~~~~~~gv~i~~~~~----v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
..+. . .+ .+.+.+.++..++...++++..+.. ..++..... -..|.+. +
T Consensus 82 ~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~-~~~v~l~--------------~ 146 (420)
T KOG2614|consen 82 KEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK-KLVVHLS--------------D 146 (420)
T ss_pred CeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc-ccceecC--------------C
Confidence 1111 1 11 2333344555555556666665431 111111100 0011111 3
Q ss_pred ceEEEcCeEEEcCCCCCCC
Q 020815 226 PNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~~ 244 (321)
+.++++|.+|.|+|.++..
T Consensus 147 g~~~~~dlligCDGa~S~V 165 (420)
T KOG2614|consen 147 GTTVKGDLLIGCDGAYSKV 165 (420)
T ss_pred CcEEEeeEEEEcCchHHHH
Confidence 4789999999999966543
No 210
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.87 E-value=4.9e-08 Score=90.50 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~ 249 (321)
......+.+.+. ..|++++++++|++++.+++.+.+|.+.. +.+|.+++||+|.|..+. .++
T Consensus 173 ~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~~--------------g~~i~~~~vvlA~Grsg~---dw~ 234 (486)
T COG2509 173 PKVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLTK--------------GEEIEADYVVLAPGRSGR---DWF 234 (486)
T ss_pred HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEccC--------------CcEEecCEEEEccCcchH---HHH
Confidence 456677778776 78999999999999999999888888753 379999999999996653 444
Q ss_pred hhhhhc-CC-cccccCCceeecccccch
Q 020815 250 KRLKSI-GM-IEEVPGMKALDMNSAEDA 275 (321)
Q Consensus 250 ~~~~~~-g~-~~~~~~~~~~~~~~~~~~ 275 (321)
..+... |. +.+-|-..+.....+...
T Consensus 235 ~~l~~K~Gv~~~~~p~dIGVRvE~p~~v 262 (486)
T COG2509 235 EMLHKKLGVKMRAKPFDIGVRVEHPQSV 262 (486)
T ss_pred HHHHHhcCcccccCCeeEEEEEecchHh
Confidence 444332 54 333344444444444433
No 211
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.87 E-value=4.6e-08 Score=91.84 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..+.+.|.+.+. +.|++++.+++|.++..+++++.+|.+.. +....++||.||+|+|++
T Consensus 263 ~RL~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~------------g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRN------------HRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecC------------CccceEECCEEEEccCCC
Confidence 455677777776 67999999999999999999888887632 112579999999999977
No 212
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.86 E-value=3.9e-08 Score=98.82 Aligned_cols=39 Identities=36% Similarity=0.710 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||+|++|+++|+.|++. |++|+|+|+...+||-
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCce
Confidence 57999999999999999999999 9999999998877764
No 213
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.85 E-value=8.6e-09 Score=87.71 Aligned_cols=113 Identities=25% Similarity=0.339 Sum_probs=70.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
||||||||++|+.+|.+|++. +.+|+|+|+.+.. ++...++............ ..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------~~ 55 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHR---------------------HE 55 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHH---------------------HH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccccc---ccccccccccccccccccc---------------------cc
Confidence 799999999999999999998 9999999886421 1111122221111110000 00
Q ss_pred HH--H--HHHHHHHcCCCcEEEcCceEEEEEEECCEEE----EEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 172 FT--S--TIMSKLLARPNVKLFNAVAAEDLIVKGGRVG----GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 172 ~~--~--~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~----gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
+. + .+.+++. ..+++++.+.++.++....+.+. .+... ..++..++.+|+||+|+|..
T Consensus 56 ~~~~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 56 FLPARLFKLVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-----------ETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHGHHHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-----------ETTTEEEEEEEEEEEESTEE
T ss_pred cccccccccccccc-cceEEEeeccccccccccccccccCcccceee-----------ccCCceEecCCeeeecCccc
Confidence 00 0 4444443 47899988899999988777541 11110 01245789999999999965
No 214
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.84 E-value=1.5e-08 Score=88.60 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=91.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccccCcccchhhhccc----------hHHHHHH-H--
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------PAHIFLD-E-- 152 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-----G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~----------~~~~~l~-~-- 152 (321)
..|+|||||+.|+++||+|++.| -..++|+|+....||.+-..+.+........ ...+.|. +
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999972 2789999998888776644444333222211 1112221 1
Q ss_pred ----cCCC----------cccC------CC-------------------eEEEecHHHHHHHHHHHHHcCCCcEEEcCce
Q 020815 153 ----LGID----------YDEQ------DN-------------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVA 193 (321)
Q Consensus 153 ----~g~~----------~~~~------~~-------------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~ 193 (321)
||.. |+.. +. -.-..|...|.+.++..+.+..||+++.+ .
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-k 169 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG-K 169 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-e
Confidence 1110 0000 00 00134678899999999998888999999 8
Q ss_pred EEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 194 v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
|.++..+.+++.++.... +. +......++.+|++.|-+.
T Consensus 170 v~ev~dEk~r~n~v~~ae-----~~-----~ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852|consen 170 VKEVSDEKHRINSVPKAE-----AE-----DTIIKADVHKIVVSAGPWT 208 (380)
T ss_pred eEEeecccccccccchhh-----hc-----CceEEeeeeEEEEecCCCc
Confidence 888875667776654421 11 1246678889999999654
No 215
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.84 E-value=4.8e-08 Score=96.38 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=66.4
Q ss_pred hHHHHHHHcCCCcccCCC--eE------------------EEe-----cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEE
Q 020815 145 PAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (321)
Q Consensus 145 ~~~~~l~~~g~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 199 (321)
..++||+++|++|+...+ +. ... .+..+...|.+++. +.||++++++.+++|+.
T Consensus 69 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~ 147 (565)
T TIGR01816 69 EAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLM 147 (565)
T ss_pred HHHHHHHhcCcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEe
Confidence 356899999999975321 10 000 23567788888886 67999999999999999
Q ss_pred ECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++++|.|+...+. .++....|.||.||+||||++.
T Consensus 148 ~~g~v~Ga~~~~~---------~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 148 EDGECRGVIAYCL---------ETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred eCCEEEEEEEEEc---------CCCcEEEEEeCeEEECCCCccc
Confidence 8999999987421 1234568999999999999873
No 216
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.82 E-value=9.3e-08 Score=89.39 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..+.+.|.+.+.+..|++++++++|++|...++.-.-|.+.+ . .+++..+++|++|++..||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~------~---~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKD------L---KTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEe------c---CCCCeEEEECCEEEECCchHh
Confidence 567788888888777999999999999998765444444432 1 223558999999999999654
No 217
>PRK02106 choline dehydrogenase; Validated
Probab=98.82 E-value=1.3e-08 Score=100.43 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=43.7
Q ss_pred HHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 177 ~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+..+.+..|++|+.++.|++|+.++++++||+.... .+....+.+|.||+|+|+...
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~----------~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG----------GGRETARARREVILSAGAINS 263 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC----------CcEEEEEeeeeEEEccCCCCC
Confidence 333444678999999999999999889999988531 112345789999999998764
No 218
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.78 E-value=9.3e-08 Score=99.85 Aligned_cols=39 Identities=31% Similarity=0.479 Sum_probs=36.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||||+|||++|+.|++. |++|+|+|+...+||.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcce
Confidence 57999999999999999999999 9999999998877764
No 219
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.78 E-value=2.3e-08 Score=94.51 Aligned_cols=135 Identities=18% Similarity=0.290 Sum_probs=87.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||+|..|+.+|..|++. |.+|+|||+.+.+.... ...
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~ 186 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGRN-------------------------------------APP 186 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhhh-------------------------------------cCH
Confidence 4799999999999999999999 99999999975432100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.++.++++.. ++.+ .+.+. ++.++.+|.||+|+|...+. .
T Consensus 187 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~-~~~~-~v~l~--------------~g~~i~aD~Vv~a~G~~pn~-----~ 244 (396)
T PRK09754 187 PVQRYLLQRHQ-QAGVRILLNNAIEHVVD-GEKV-ELTLQ--------------SGETLQADVVIYGIGISAND-----Q 244 (396)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCeeEEEEc-CCEE-EEEEC--------------CCCEEECCEEEECCCCChhh-----H
Confidence 23344455554 67999999999998865 3332 23332 22579999999999954331 1
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.+.+.++. . ..++.++. +.+...|++|+.|+.+..
T Consensus 245 l~~~~gl~--~--~~gi~vd~-------~~~ts~~~IyA~GD~a~~ 279 (396)
T PRK09754 245 LAREANLD--T--ANGIVIDE-------ACRTCDPAIFAGGDVAIT 279 (396)
T ss_pred HHHhcCCC--c--CCCEEECC-------CCccCCCCEEEccceEee
Confidence 22233321 1 12232222 223457999999998843
No 220
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.78 E-value=1.2e-07 Score=77.79 Aligned_cols=131 Identities=23% Similarity=0.326 Sum_probs=75.8
Q ss_pred EEECCChHHHHHHHHhhcC----CCCeEEEEeccCCCC-CccccCcccchhhh----------cc---chHHHHHHHcCC
Q 020815 94 VVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSPG-GGAWLGGQLFSAMV----------VR---KPAHIFLDELGI 155 (321)
Q Consensus 94 vIIGgG~aGl~aA~~La~~----~G~~V~liEk~~~~g-g~~~~~g~~~~~~~----------~~---~~~~~~l~~~g~ 155 (321)
+|||+|++|++++.+|.+. ...+|+|+|+... | |..|........++ .. ....+|+++.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999876 2679999999654 5 55554432111111 01 235577776663
Q ss_pred ---CcccCCCeEEEecHHHHHHHHHHHHHc--CCCcEEE-cCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE
Q 020815 156 ---DYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKLF-NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 229 (321)
Q Consensus 156 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~-~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 229 (321)
.......|.....-.+|.+..++.+.+ ..++++. ...+|++|...++.. .+.+. ++..+
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~~ 144 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTA--------------DGQSI 144 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEEC--------------CCCEE
Confidence 111111222111123344444444332 2354442 244899988877653 33332 23678
Q ss_pred EcCeEEEcCCC
Q 020815 230 EAKVVVSSCGH 240 (321)
Q Consensus 230 ~a~~VI~AtG~ 240 (321)
.+|.||+|+|+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999994
No 221
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.77 E-value=4.4e-08 Score=99.94 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=73.8
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCcccchhhhccch-HHHHHHHcCCCcc-----c--
Q 020815 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYD-----E-- 159 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~---gg~~~~~g~~~~~~~~~~~-~~~~l~~~g~~~~-----~-- 159 (321)
+|+|||||++|+++|+.|++. +|++|+|+||+... |.+..........+..... ..+.+......++ .
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999985 37999999998753 2221111111111110111 1111111111111 0
Q ss_pred -----CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815 160 -----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (321)
Q Consensus 160 -----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V 234 (321)
.+..+...+...+.+.|++++. +.|++++++++++++.. ..+++|.|
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~~---------------------------~~~~~D~V 133 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQA---------------------------LAADADLV 133 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchhh---------------------------hhcCCCEE
Confidence 0111223566888899998887 57999999987765410 22578999
Q ss_pred EEcCCCCC
Q 020815 235 VSSCGHDG 242 (321)
Q Consensus 235 I~AtG~~~ 242 (321)
|.|+|..+
T Consensus 134 VgADG~~S 141 (765)
T PRK08255 134 IASDGLNS 141 (765)
T ss_pred EEcCCCCH
Confidence 99999554
No 222
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.74 E-value=5.1e-08 Score=100.18 Aligned_cols=97 Identities=26% Similarity=0.287 Sum_probs=66.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..+|+|||||+||+++|+.|++. |++|+|+|+.+.+||.... +++. +. -.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG~lr~---------------------~IP~-----~R---lp 588 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGGVVKN---------------------IIPQ-----FR---IP 588 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCcceee---------------------eccc-----cc---cc
Confidence 46999999999999999999999 9999999998877764321 0110 00 01
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.+......+.+. +.|++++.++.+ ++..++ ......|+||+|||...
T Consensus 589 ~evL~~die~l~-~~GVe~~~gt~V-di~le~------------------------L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 589 AELIQHDIEFVK-AHGVKFEFGCSP-DLTVEQ------------------------LKNEGYDYVVVAIGADK 635 (1019)
T ss_pred HHHHHHHHHHHH-HcCCEEEeCcee-EEEhhh------------------------heeccCCEEEECcCCCC
Confidence 223334445555 579999999766 322111 12345799999999864
No 223
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.74 E-value=3.5e-08 Score=96.83 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=43.5
Q ss_pred HHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++..+.+..|++|+.++.|.+|+.++++++||++... + .....+.+|.||+|.|+..+
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~------~----~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG------G----RKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC------C----cEEEEEEeeeEEEccCCCCC
Confidence 3444544679999999999999999899999987531 0 01234688999999998654
No 224
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.74 E-value=3e-07 Score=88.48 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|+|||||++||++|+.|++. |++|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc
Confidence 489999999999999999999 99999999998888754
No 225
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.73 E-value=1.9e-07 Score=67.59 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=60.2
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHHH
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALF 172 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 172 (321)
|+|||||..|+.+|..|++. |.+|+||++.+.+. .. ....+
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~-~~-------------------------------------~~~~~ 42 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL-PG-------------------------------------FDPDA 42 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS-TT-------------------------------------SSHHH
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh-hh-------------------------------------cCHHH
Confidence 89999999999999999999 99999999987542 10 11334
Q ss_pred HHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEe
Q 020815 173 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (321)
Q Consensus 173 ~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~ 210 (321)
...+.+.+. +.|+++++++.+.++..+++.+. |++.
T Consensus 43 ~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-V~~~ 78 (80)
T PF00070_consen 43 AKILEEYLR-KRGVEVHTNTKVKEIEKDGDGVE-VTLE 78 (80)
T ss_dssp HHHHHHHHH-HTTEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred HHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence 455556665 56999999999999998876555 6664
No 226
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.72 E-value=2.6e-07 Score=86.05 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=82.1
Q ss_pred hHHHHHHHcCCCcccCCC---eEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC
Q 020815 145 PAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 221 (321)
Q Consensus 145 ~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~ 221 (321)
+.++|++++|+++....+ |+....+..+.+.|...+. +.||+++++++|++| +++. ..+.+..
T Consensus 58 d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~---------- 123 (376)
T TIGR03862 58 ALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD---------- 123 (376)
T ss_pred HHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC----------
Confidence 456899999998765433 3345678899999998887 789999999999998 4433 3444421
Q ss_pred CCCCceEEEcCeEEEcCCCCCC--Ccc--hhhhhhhhcCC--cccccCCceeeccc
Q 020815 222 SCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNS 271 (321)
Q Consensus 222 ~~g~~~~i~a~~VI~AtG~~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~ 271 (321)
....++||.||+|||+.+. .+. ++++.+.++|| ++++|.++++....
T Consensus 124 ---~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~ 176 (376)
T TIGR03862 124 ---GQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDW 176 (376)
T ss_pred ---CceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcccCCcCeeceEEccC
Confidence 1246999999999998653 222 56888888888 88899999887643
No 227
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.72 E-value=1.7e-07 Score=87.22 Aligned_cols=42 Identities=48% Similarity=0.722 Sum_probs=39.2
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
+..||||||+|.+||++|+.|.+. |++|+|+|.++..||.++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeE
Confidence 368999999999999999999999 999999999999998775
No 228
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.72 E-value=1.8e-07 Score=87.92 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=88.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||+|..|+.+|..|++. |.+|+++|+.+.+.... ...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~ 183 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLASL-------------------------------------MPP 183 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccchh-------------------------------------CCH
Confidence 4799999999999999999999 99999999875321100 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.....+.+.+. +.|++++.++.++++..+++.+ .+... ++.++.+|.||+|+|..... .
T Consensus 184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~vI~a~G~~p~~-----~ 242 (377)
T PRK04965 184 EVSSRLQHRLT-EMGVHLLLKSQLQGLEKTDSGI-RATLD--------------SGRSIEVDAVIAAAGLRPNT-----A 242 (377)
T ss_pred HHHHHHHHHHH-hCCCEEEECCeEEEEEccCCEE-EEEEc--------------CCcEEECCEEEECcCCCcch-----H
Confidence 23344455554 6799999999999987655432 23332 23679999999999955432 1
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.+.+.++. ...++..+. +.+...|++|++|+++..
T Consensus 243 l~~~~gl~----~~~gi~vd~-------~l~ts~~~VyA~GD~a~~ 277 (377)
T PRK04965 243 LARRAGLA----VNRGIVVDS-------YLQTSAPDIYALGDCAEI 277 (377)
T ss_pred HHHHCCCC----cCCCEEECC-------CcccCCCCEEEeeecEeE
Confidence 22223321 112233322 123356999999998753
No 229
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.71 E-value=8.4e-08 Score=84.94 Aligned_cols=139 Identities=23% Similarity=0.292 Sum_probs=85.7
Q ss_pred cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCC-------------CccccCcccchhhhccch--HHHHHHHc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPG-------------GGAWLGGQLFSAMVVRKP--AHIFLDEL 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~g-------------g~~~~~g~~~~~~~~~~~--~~~~l~~~ 153 (321)
+||+||||||+.|++.|.+|.- +|+++|.|+|+....+ |-.+..+.+-.+++++.. ..+++++.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~ 127 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEK 127 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhhc
Confidence 6999999999999999999875 5799999999976543 111222233333444332 34566777
Q ss_pred CCCcccCCCeEEE----------------------------------------------------ecHHHHHHHHHHHHH
Q 020815 154 GIDYDEQDNYVVI----------------------------------------------------KHAALFTSTIMSKLL 181 (321)
Q Consensus 154 g~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~l~~~~~ 181 (321)
++++...+.+.+. .+-..++..+-+...
T Consensus 128 ~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~ 207 (453)
T KOG2665|consen 128 KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFD 207 (453)
T ss_pred CCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHH
Confidence 7776654333221 111233444445543
Q ss_pred cCCCcEEEcCceEEEEEEECCEE--EEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 182 ARPNVKLFNAVAAEDLIVKGGRV--GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 182 ~~~gv~i~~~~~v~~l~~~~~~v--~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..|.+++.+.++..+...+..- .-+++ .+ +..++++++.||-|+|-.
T Consensus 208 -~~gg~i~~n~~l~g~~~n~~~~~~Ypivv------~n------gk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 208 -FMGGRIYTNFRLQGIAQNKEATFSYPIVV------LN------GKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred -HhcccccccceeccchhccCCCCCCceEE------ec------CccceeEEeEEEEecccc
Confidence 5788888888888876544310 01111 11 235789999999999944
No 230
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.71 E-value=3.4e-08 Score=102.24 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=68.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..+|+|||+|||||+||+.|++. |++|+|+|+...+||-.. +|++-. ...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~l~---------------------yGIP~~--------rlp 355 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGVLR---------------------YGIPEF--------RLP 355 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCceEE---------------------ccCCCC--------cCh
Confidence 57999999999999999999999 999999999987777321 233311 122
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
.++.....+.+. +.|++++.++.+-.- +.+. +.....+|.||+|+|..
T Consensus 356 ~~vi~~~i~~l~-~~Gv~f~~n~~vG~d---------it~~--------------~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 356 NQLIDDVVEKIK-LLGGRFVKNFVVGKT---------ATLE--------------DLKAAGFWKIFVGTGAG 403 (944)
T ss_pred HHHHHHHHHHHH-hhcCeEEEeEEeccE---------EeHH--------------HhccccCCEEEEeCCCC
Confidence 445555566665 579999988654211 1111 11234679999999985
No 231
>PLN02785 Protein HOTHEAD
Probab=98.69 E-value=1e-07 Score=94.18 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.||+||||+|.+|+.+|.+|++ +.+|+|||++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence 5999999999999999999998 48999999986
No 232
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.69 E-value=2.1e-07 Score=89.31 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=89.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+.+|..|.+. |.+|.++++.+.+... . ...
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------~-----------~~~ 191 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILPD--------------------------S-----------FDK 191 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCch--------------------------h-----------cCH
Confidence 4899999999999999999998 9999999986432100 0 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+.+.+.+.+. +.|++++.+++++++.. ++++..+.+. ..++.+|.||+|+|.... ..
T Consensus 192 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~-~~~~~~v~~~---------------~~~i~~d~vi~a~G~~p~-----~~ 249 (444)
T PRK09564 192 EITDVMEEELR-ENGVELHLNEFVKSLIG-EDKVEGVVTD---------------KGEYEADVVIVATGVKPN-----TE 249 (444)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCEEEEEec-CCcEEEEEeC---------------CCEEEcCEEEECcCCCcC-----HH
Confidence 34455555554 67999999999999853 4445444432 146999999999995433 12
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcC
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~ 298 (321)
.+.+.++. +.....+.++. ..+...|++|++|+++...+
T Consensus 250 ~l~~~gl~--~~~~g~i~vd~-------~~~t~~~~IyA~GD~~~~~~ 288 (444)
T PRK09564 250 FLEDTGLK--TLKNGAIIVDE-------YGETSIENIYAAGDCATIYN 288 (444)
T ss_pred HHHhcCcc--ccCCCCEEECC-------CcccCCCCEEEeeeEEEEEe
Confidence 23333331 11111122222 22345799999999986543
No 233
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.66 E-value=6.2e-08 Score=99.91 Aligned_cols=40 Identities=38% Similarity=0.669 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.++|+|||||+||++||+.|++. |++|+|+|+.+.+||..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~l 576 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGVV 576 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCcee
Confidence 57999999999999999999999 99999999998877753
No 234
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.66 E-value=3.1e-08 Score=69.31 Aligned_cols=36 Identities=36% Similarity=0.661 Sum_probs=32.6
Q ss_pred EECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 95 IIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
|||||++|+++|+.|++. |.+|+|+|+++.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCccee
Confidence 899999999999999999 999999999999988653
No 235
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=7.8e-07 Score=85.95 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+..|..+++. |.+|+|||+.+.+... ...
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~~--------------------------------------~d~ 215 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICPG--------------------------------------TDT 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCC--------------------------------------CCH
Confidence 4799999999999999999999 9999999987532100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
++...+.+.+. +.|++++.++.++++..+++.+. +.... . .+++..++.+|.||+|+|...... .+
T Consensus 216 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~---~~g~~~~i~~D~vi~a~G~~pn~~--~l- 281 (466)
T PRK06115 216 ETAKTLQKALT-KQGMKFKLGSKVTGATAGADGVS-LTLEP------A---AGGAAETLQADYVLVAIGRRPYTQ--GL- 281 (466)
T ss_pred HHHHHHHHHHH-hcCCEEEECcEEEEEEEcCCeEE-EEEEE------c---CCCceeEEEeCEEEEccCCccccc--cC-
Confidence 23344555555 67999999999999976544332 22211 0 012346799999999999554321 00
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.+. .+ ...+...+ .+.+...|++|++||.+.
T Consensus 282 ~~~~~g~--~~-~~~G~~vd-------~~~~Ts~~~IyA~GD~~~ 316 (466)
T PRK06115 282 GLETVGL--ET-DKRGMLAN-------DHHRTSVPGVWVIGDVTS 316 (466)
T ss_pred Ccccccc--ee-CCCCEEEC-------CCeecCCCCEEEeeecCC
Confidence 0111111 00 01122221 233456799999999873
No 236
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.65 E-value=2.8e-07 Score=86.95 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=60.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc------------chHHHHHHHcCCC-c
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR------------KPAHIFLDELGID-Y 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~------------~~~~~~l~~~g~~-~ 157 (321)
.||+|||||++|+.+|+.|++. |++|+|+|+.+..+........+ ..+... .-..+.++.++.. +
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~~p~~~~~~~-~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~ 78 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKLTPAHHTEDL-AELVCSNSLGAKALDRAAGLLKTEMRQLSSLII 78 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccccCchhhhhhh-hhhcccccccchhHHhccCcHHHHHhhcCeeee
Confidence 3899999999999999999999 99999999876543211110000 000000 0112333443321 1
Q ss_pred cc------CCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815 158 DE------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (321)
Q Consensus 158 ~~------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l 197 (321)
.. ........+...|.+.+.+++.+.++++++.. .++++
T Consensus 79 ~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~-eV~dL 123 (433)
T TIGR00137 79 TAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIRE-EVTEI 123 (433)
T ss_pred ehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEee-eeEEE
Confidence 10 01123344566778888888887788887733 55544
No 237
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.65 E-value=2e-07 Score=87.57 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=62.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc------------hHHHHHHHcC-CCc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK------------PAHIFLDELG-IDY 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~------------~~~~~l~~~g-~~~ 157 (321)
.||+|||||++|+.+|+.|++. |++|+|+|+.+........... +..+.... -..+.++.++ +.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~~-~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~ 80 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTDG-FAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM 80 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCcc-ccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence 4999999999999999999999 9999999987644321110000 01111000 0112333333 111
Q ss_pred ccC------CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815 158 DEQ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (321)
Q Consensus 158 ~~~------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l 197 (321)
... ....+..+...+.+.|.+++.+.++++++ ..+|+++
T Consensus 81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 111 11123445566888889998888899998 4466665
No 238
>PLN02612 phytoene desaturase
Probab=98.65 E-value=7.4e-07 Score=88.04 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=36.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
...+|+|||||++|+++|++|++. |++|+|+|++..+||.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence 357999999999999999999999 9999999998877764
No 239
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=81.56 Aligned_cols=38 Identities=34% Similarity=0.650 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|+|||+|++|++||+.|... |.+|+|+||+...||..
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRl 40 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRL 40 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccch
Confidence 799999999999999999999 99999999998887653
No 240
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.64 E-value=6e-07 Score=87.80 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=98.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||..|+.+|..|++. +.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~~------------------------------------------ 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELKA------------------------------------------ 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCCh------------------------------------------
Confidence 4899999999999999999998 999999997642100
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
...+.+.+.+..|++++.++.++++..+++++.+|.+.+. .+++..++.+|.||+|+|...... ..+
T Consensus 390 --~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~---------~~~~~~~i~~D~vi~a~G~~Pn~~--~l~ 456 (515)
T TIGR03140 390 --DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDR---------NSGEEKQLDLDGVFVQIGLVPNTE--WLK 456 (515)
T ss_pred --hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEEC---------CCCcEEEEEcCEEEEEeCCcCCch--HHh
Confidence 0123344443469999999999999776677777766431 112346799999999999554321 111
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhcc
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR 319 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (321)
.. . .+.....+..+. +.+...|++|++|+.+.. | ....-..+..|.+||.
T Consensus 457 ---~~-~--~~~~~G~I~vd~-------~~~Ts~p~IyAaGDv~~~----~--~~~~~~A~~~G~~Aa~ 506 (515)
T TIGR03140 457 ---DA-V--ELNRRGEIVIDE-------RGRTSVPGIFAAGDVTTV----P--YKQIIIAMGEGAKAAL 506 (515)
T ss_pred ---hh-c--ccCCCCeEEECC-------CCCCCCCCEEEcccccCC----c--cceEEEEEccHHHHHH
Confidence 11 1 011111122222 223467999999998732 2 1233467777777763
No 241
>PRK12831 putative oxidoreductase; Provisional
Probab=98.62 E-value=5.2e-08 Score=93.95 Aligned_cols=41 Identities=39% Similarity=0.678 Sum_probs=37.0
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
...||+|||||++|+++|++|++. |++|+|+|+...+||..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l 179 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVL 179 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCee
Confidence 357999999999999999999999 99999999988777643
No 242
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.61 E-value=9.6e-07 Score=79.14 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHhhc---CCCCeEEEEeccCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVS 125 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~---~~G~~V~liEk~~~ 125 (321)
++||+|||||..|++.|+.|.+ ..|++|+++|++..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 6899999999999999999976 23799999999764
No 243
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.61 E-value=9.5e-07 Score=85.21 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=72.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||.+|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 211 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILPG--------------------------------------EDA 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCCC--------------------------------------CCH
Confidence 4899999999999999999999 9999999997532100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. +.|++++.++.++++..+++.+. +.... +...++.+|.||+|+|....
T Consensus 212 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------------g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 212 EVSKVVAKALK-KKGVKILTNTKVTAVEKNDDQVV-YENKG------------GETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEeC------------CcEEEEEeCEEEEecCCccc
Confidence 23344455554 57999999999999987766544 32211 12257999999999996554
No 244
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.61 E-value=5.3e-07 Score=80.41 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
.+.+.|..+.. ..|.-++.+-+|.+....+++|+.+.+.+ + ....++|+..|+|+|.+
T Consensus 259 Rl~~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn------~------~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRN------H------ADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEecc------c------ccCCCChhHeeeecccc
Confidence 34456666665 67899999999999999999999888742 1 33679999999999965
No 245
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.61 E-value=7.6e-07 Score=81.65 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCC---CCeEEEEeccCCCCCccccCcccchhhhcc--chHHHHHHHcCCC--------
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDELGID-------- 156 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~---G~~V~liEk~~~~gg~~~~~g~~~~~~~~~--~~~~~~l~~~g~~-------- 156 (321)
.|||||||||++|++.|..|..+| .+||+|+|....+.=..|.....+...+.. ...+..++.+|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 589999999999999999998753 579999998844322223333333322211 1233333333221
Q ss_pred ------------------cccCC---CeEEEecHHHHHHHHH--HHHHcCCCcEEEcCceEEEEEEE-------CCEEEE
Q 020815 157 ------------------YDEQD---NYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GGRVGG 206 (321)
Q Consensus 157 ------------------~~~~~---~~~~~~~~~~~~~~l~--~~~~~~~gv~i~~~~~v~~l~~~-------~~~v~g 206 (321)
|+... +...+.....+...|+ ....+..++++.+...+.++.+. ++...-
T Consensus 116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~ 195 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH 195 (481)
T ss_pred ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence 11110 1112223344445555 33334689999999998887652 233333
Q ss_pred EEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhhhcCC
Q 020815 207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257 (321)
Q Consensus 207 v~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~~~g~ 257 (321)
+... ++..+.+|.+|.|+| .++.+|++.++..
T Consensus 196 i~l~--------------dg~~~~~~LLigAdg-----~Ns~vR~~snid~ 227 (481)
T KOG3855|consen 196 ITLT--------------DGINFATDLLIGADG-----FNSVVRKASNIDV 227 (481)
T ss_pred EEec--------------cCceeeeceeecccc-----ccchhhhhcCCCc
Confidence 3332 236899999999999 5566777776643
No 246
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.61 E-value=5.7e-07 Score=88.97 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=35.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||+|++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG~ 175 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGGM 175 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence 46899999999999999999999 9999999998877763
No 247
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.61 E-value=7.9e-07 Score=89.25 Aligned_cols=40 Identities=33% Similarity=0.610 Sum_probs=36.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..+|+|||+|++|+++|+.|++. |++|+|+|+...+||..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG~l 232 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAGGMM 232 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence 47999999999999999999999 99999999988777643
No 248
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=1.1e-06 Score=84.70 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=88.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 213 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILPG--------------------------------------EDK 213 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCCc--------------------------------------CCH
Confidence 3799999999999999999999 9999999997532100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.+++++++..+++.+. +...+ .++..++.+|.||+|+|.......-
T Consensus 214 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~-----------gg~~~~i~~D~vi~a~G~~p~~~~l--- 277 (462)
T PRK06416 214 EISKLAERALK-KRGIKIKTGAKAKKVEQTDDGVT-VTLED-----------GGKEETLEADYVLVAVGRRPNTENL--- 277 (462)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEEe-----------CCeeEEEEeCEEEEeeCCccCCCCC---
Confidence 33344445554 67999999999999987666433 32221 0122579999999999965442210
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.++. +. ...+..+. +.+...|++|++|+++.
T Consensus 278 ~l~~~gl~--~~-~g~i~vd~-------~~~t~~~~VyAiGD~~~ 312 (462)
T PRK06416 278 GLEELGVK--TD-RGFIEVDE-------QLRTNVPNIYAIGDIVG 312 (462)
T ss_pred CchhcCCe--ec-CCEEeECC-------CCccCCCCEEEeeecCC
Confidence 01122220 11 11122221 23356799999999863
No 249
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.60 E-value=6.6e-07 Score=85.38 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=91.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
.++|||||..|+..|..+++. |.+|+|||+.+.+-. ....+
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp--------------------------------------~~D~e 215 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP--------------------------------------GEDPE 215 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC--------------------------------------cCCHH
Confidence 699999999999999999999 999999999864311 01145
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR 251 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~ 251 (321)
+.+.+.+.+. +.+++++.+++++.+...++. ..+...+ ++..++++|.|++|+|.......-+
T Consensus 216 i~~~~~~~l~-~~gv~i~~~~~v~~~~~~~~~-v~v~~~~------------g~~~~~~ad~vLvAiGR~Pn~~~Lg--- 278 (454)
T COG1249 216 ISKELTKQLE-KGGVKILLNTKVTAVEKKDDG-VLVTLED------------GEGGTIEADAVLVAIGRKPNTDGLG--- 278 (454)
T ss_pred HHHHHHHHHH-hCCeEEEccceEEEEEecCCe-EEEEEec------------CCCCEEEeeEEEEccCCccCCCCCC---
Confidence 5666666776 478999999999999877665 3444422 1223799999999999554432111
Q ss_pred hhhcCCcccccCCceeecccccchhhcccccc-cccccccccch
Q 020815 252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREV-VPGMIVTGMEV 294 (321)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pg~~~~g~~~ 294 (321)
+.+ .++.++......+...++. +|++|++||..
T Consensus 279 Le~----------~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~ 312 (454)
T COG1249 279 LEN----------AGVELDDRGFIKVDDQMTTNVPGIYAIGDVI 312 (454)
T ss_pred hhh----------cCceECCCCCEEeCCccccCCCCEEEeeccC
Confidence 111 1222222211222233343 79999999885
No 250
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.60 E-value=1.2e-06 Score=84.56 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=70.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 207 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLPR--------------------------------------EEP 207 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCCc--------------------------------------cCH
Confidence 4899999999999999999999 9999999987532100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.+++++++..+++.+ .+.+.. ++...++.+|.||+|+|....
T Consensus 208 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-----------~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 208 EISAAVEEALA-EEGIEVVTSAQVKAVSVRGGGK-IITVEK-----------PGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHH-HcCCEEEcCcEEEEEEEcCCEE-EEEEEe-----------CCCceEEEeCEEEEeECCCcC
Confidence 23334444454 6799999999999997655432 233211 012367999999999995543
No 251
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=9.9e-07 Score=85.39 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=72.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||||.+|+.+|..|++. |.+|+|||+.+.+... ...
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~~~ 221 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILPT--------------------------------------EDA 221 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCCc--------------------------------------CCH
Confidence 4899999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. +.|++++.+++++++..+ ++++..+...+ ++..++.+|.||+|+|....
T Consensus 222 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------------g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 222 ELSKEVARLLK-KLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------------GEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHH-hcCCEEEeCcEEEEEEEecCCCEEEEEEeC------------CceEEEEeCEEEEeeCCccC
Confidence 34445555554 679999999999998752 34443333211 23357999999999996654
No 252
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.58 E-value=1.2e-07 Score=87.54 Aligned_cols=138 Identities=19% Similarity=0.174 Sum_probs=72.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhh-----------cc-----chHHHHHHHc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV-----------VR-----KPAHIFLDEL 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~-----------~~-----~~~~~~l~~~ 153 (321)
.||+|+||.||++|+.|..|.+.+..+++.+|+.+.. .|..|.+..... .. .....+|.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f---~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF---SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC---CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 4899999999999999999998635999999987643 365554332110 00 0133455544
Q ss_pred CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECC---EEEEEEEeecceecccCCCCCCCceEEE
Q 020815 154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVME 230 (321)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~ 230 (321)
|--+.....-.......+|.+++ +.+.++..-.+.++.+|++|..+++ ....|.+.+ .+|+..++.
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl-~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----------~~g~~~~~~ 147 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYL-RWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----------SDGDGETYR 147 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHH-HHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----------TTS-EEEEE
T ss_pred CChhhhhhcCCCCCCHHHHHHHH-HHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----------cCCCeeEEE
Confidence 43211100000011234555554 4454456655888999999987643 244455422 223558999
Q ss_pred cCeEEEcCCCC
Q 020815 231 AKVVVSSCGHD 241 (321)
Q Consensus 231 a~~VI~AtG~~ 241 (321)
|+.||+|+|..
T Consensus 148 ar~vVla~G~~ 158 (341)
T PF13434_consen 148 ARNVVLATGGQ 158 (341)
T ss_dssp ESEEEE----E
T ss_pred eCeEEECcCCC
Confidence 99999999933
No 253
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.58 E-value=4.7e-07 Score=85.74 Aligned_cols=37 Identities=35% Similarity=0.682 Sum_probs=34.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG 129 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~ 129 (321)
.++|||||++||++|++|.+. + ..++|+|+.+..||-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence 489999999999999999998 6 999999999888874
No 254
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.58 E-value=5.3e-07 Score=86.10 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=86.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|.+|+.+|..|++. |.+|+++++.+.+.... ...
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~~-------------------------------------~~~ 179 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNKL-------------------------------------FDE 179 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCccc-------------------------------------cCH
Confidence 4899999999999999999998 99999999875321000 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.++.+.++..+ +.+ +... ++.++.+|.||+|+|..... .
T Consensus 180 ~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~-~~~--v~~~--------------~g~~i~~D~vi~a~G~~p~~-----~ 236 (427)
T TIGR03385 180 EMNQIVEEELK-KHEINLRLNEEVDSIEGE-ERV--KVFT--------------SGGVYQADMVILATGIKPNS-----E 236 (427)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEecC-CCE--EEEc--------------CCCEEEeCEEEECCCccCCH-----H
Confidence 23344445554 679999999999998643 322 2222 12579999999999955432 1
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhc
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~ 297 (321)
.+.+.+.. +.....+..+. ..+...|++|+.|+.+...
T Consensus 237 ~l~~~gl~--~~~~G~i~vd~-------~~~t~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 237 LAKDSGLK--LGETGAIWVNE-------KFQTSVPNIYAAGDVAESH 274 (427)
T ss_pred HHHhcCcc--cCCCCCEEECC-------CcEeCCCCEEEeeeeEEee
Confidence 23333321 11111222222 1223579999999998543
No 255
>PRK06370 mercuric reductase; Validated
Probab=98.57 E-value=1.6e-06 Score=83.64 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=71.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~~~ 212 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPR--------------------------------------EDE 212 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcc--------------------------------------cCH
Confidence 4899999999999999999999 9999999997542110 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+.+.+.+. +.|++++.++++.++..+++.+ .+.... . ++..++.+|.||+|+|....
T Consensus 213 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~-~v~~~~------~-----~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 213 DVAAAVREILE-REGIDVRLNAECIRVERDGDGI-AVGLDC------N-----GGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEE-EEEEEe------C-----CCceEEEeCEEEECcCCCcC
Confidence 23344455554 6899999999999997665533 222211 0 12357999999999995544
No 256
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.57 E-value=1e-06 Score=85.31 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=35.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~ 126 (321)
.+||.||||||.||+..|-.|++.|..+|+|||++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 37999999999999999999999878999999998765
No 257
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=1e-06 Score=84.76 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=71.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+..|..|++. |.+|+++++.+.+... ...
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~ 208 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLRG--------------------------------------FDP 208 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCccc--------------------------------------cCH
Confidence 4899999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.++.+.++..+++....+.+. ++.++.+|.||+|+|....
T Consensus 209 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~g~~~v~~~--------------~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEME-KKGIRLHTNAVPKAVEKNADGSLTLTLE--------------DGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHH-HCCcEEECCCEEEEEEEcCCceEEEEEc--------------CCcEEEeCEEEEeeCCCcC
Confidence 34445555554 6799999999999998754432223332 1257999999999995544
No 258
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=2e-06 Score=83.12 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=71.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~d~ 213 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALPN--------------------------------------EDA 213 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------cCH
Confidence 4899999999999999999999 9999999986532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.+++++++..+++.+. +.... .+++..++.+|.||+|+|....
T Consensus 214 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 214 EVSKEIAKQYK-KLGVKILTGTKVESIDDNGSKVT-VTVSK----------KDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCeEE-EEEEe----------cCCCeEEEEeCEEEECcCcccC
Confidence 33445555555 67999999999999976554332 22210 0123357999999999995544
No 259
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.8e-07 Score=80.72 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhh
Q 020815 174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK 253 (321)
Q Consensus 174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~ 253 (321)
..|.+++..-+|++++.+..-+++.-++++|+|....+ . .+++...+.=.-|.+--|-...
T Consensus 393 ~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d------r---~sge~~~l~LeGvFVqIGL~PN---------- 453 (520)
T COG3634 393 AVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD------R---VSGEEHHLELEGVFVQIGLLPN---------- 453 (520)
T ss_pred HHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe------c---cCCceeEEEeeeeEEEEecccC----------
Confidence 56677787789999999999999988888999988754 1 1123345555555555552111
Q ss_pred hcCCcccccCCceeeccc-ccchhhcccccccccccccccchhh
Q 020815 254 SIGMIEEVPGMKALDMNS-AEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
++++.+. ...+. .|..+..+....+||+|..|++...
T Consensus 454 ----T~WLkg~--vel~~rGEIivD~~g~TsvpGvFAAGD~T~~ 491 (520)
T COG3634 454 ----TEWLKGA--VELNRRGEIIVDARGETNVPGVFAAGDCTTV 491 (520)
T ss_pred ----hhHhhch--hhcCcCccEEEecCCCcCCCceeecCcccCC
Confidence 1112222 11222 3333334556789999999998643
No 260
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.55 E-value=2.2e-06 Score=82.91 Aligned_cols=37 Identities=43% Similarity=0.560 Sum_probs=34.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
+|+|||||++|+++|+.|++. |++|+|+|++..+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCce
Confidence 489999999999999999999 9999999999888864
No 261
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.55 E-value=4.6e-07 Score=86.82 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=68.0
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
+|||||||++|+.+|..|.+. ++.+|+|||+.+... +....++. ++... + ....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~---~~~~~lp~----------~~~~~-~-----------~~~~ 57 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS---FANCALPY----------YIGEV-V-----------EDRK 57 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc---cccCCcch----------hhcCc-c-----------CCHH
Confidence 699999999999999999874 368999999986432 11100000 00000 0 0001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.......+.+.++.|++++.+++|++|..++.++. +..+ ..++..++.+|++|+|||...
T Consensus 58 ~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~---~~~~---------~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 58 YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVT---VLNR---------KTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEE---EEEC---------CCCcEEeeecCEEEECCCCCC
Confidence 11111112333356999999999999977766433 2110 001224578999999999765
No 262
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.55 E-value=1.6e-06 Score=83.71 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=72.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 216 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLSF--------------------------------------LDD 216 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------CCH
Confidence 4899999999999999999999 9999999997532110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.++.++++..+++.+. +... ++.++.+|.||+|+|....
T Consensus 217 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 217 EISDALSYHLR-DSGVTIRHNEEVEKVEGGDDGVI-VHLK--------------SGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHH-HcCCEEEECCEEEEEEEeCCeEE-EEEC--------------CCCEEEeCEEEEeecCCcc
Confidence 34455556665 57999999999999987665432 2221 1257999999999996544
No 263
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.55 E-value=1.8e-07 Score=87.28 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=60.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.-+++|||||++|++||+.|++. |++|.|+||.+.+||.. .++.--|..++ -.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGrm--------------------ak~~k~FP~~d------cs 176 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGRM--------------------AKLNKTFPTND------CS 176 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccccH--------------------HhhhccCCCcc------cc
Confidence 46899999999999999999999 99999999999998842 22222222221 11
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEE
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 198 (321)
--....++..+.+++++++++.++|+++.
T Consensus 177 ~C~LaP~m~~v~~hp~i~l~TyaeV~ev~ 205 (622)
T COG1148 177 ICILAPKMVEVSNHPNIELITYAEVEEVS 205 (622)
T ss_pred hhhccchhhhhccCCceeeeeeeeeeeec
Confidence 12233456666678999999999998864
No 264
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.54 E-value=4.1e-07 Score=89.27 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCC-CceEEEcCeEEEcCCCCCC
Q 020815 175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM-DPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 175 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g-~~~~i~a~~VI~AtG~~~~ 243 (321)
.++..+.+..|++++.++.|..|+.+++++++|.+... . .+ ....+.++.||+|+|+.++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~-----~----~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG-----D----GGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC-----C----CCceEEEecCceEEEeccccCC
Confidence 34455566889999999999999999999999988531 0 01 1355678899999998774
No 265
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=1.6e-06 Score=83.52 Aligned_cols=99 Identities=20% Similarity=0.202 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||||.+|+.+|..|.+. |.+|+|+|+.+.+... ...
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~~--------------------------------------~d~ 211 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLPG--------------------------------------EDE 211 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCcc--------------------------------------ccH
Confidence 3799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+.+.+.+. +.|++++.+++++++..+++.+. +.. . ++..++.+|.||+|+|....
T Consensus 212 e~~~~l~~~L~-~~GI~i~~~~~V~~i~~~~~~v~-~~~-~------------g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 212 DIAHILREKLE-NDGVKIFTGAALKGLNSYKKQAL-FEY-E------------GSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHH-HCCCEEEECCEEEEEEEcCCEEE-EEE-C------------CceEEEEeCEEEEecCCccC
Confidence 34445555565 57999999999999875544321 111 1 12257999999999996544
No 266
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.53 E-value=1.8e-07 Score=90.22 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=65.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..+|+|||||++|+++|+.|++. |++|+|+|+.+.+||... ++++.. ...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG~l~---------------------~gip~~--------~~~ 189 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGGLLR---------------------YGIPEF--------RLP 189 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCcEee---------------------ccCCCc--------cCC
Confidence 57999999999999999999999 999999999887765321 111100 011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
..+...+.+.+. +.|++++.++.+... +... ...+.+|.||+|||..
T Consensus 190 ~~~~~~~~~~l~-~~gv~~~~~~~v~~~---------v~~~---------------~~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 190 KDIVDREVERLL-KLGVEIRTNTEVGRD---------ITLD---------------ELRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHH-HcCCEEEeCCEECCc---------cCHH---------------HHHhhCCEEEEccCCC
Confidence 344455555565 578999988765210 1110 0226789999999975
No 267
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.53 E-value=4.2e-07 Score=84.12 Aligned_cols=41 Identities=34% Similarity=0.578 Sum_probs=36.8
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.+||++|||+|.-||.+|..|++. |.+|+++|++...||..
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~gGaa 53 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVIGGAA 53 (561)
T ss_pred cccceEEecCCccchhHHHHHHhc-CcceEEEEEeeecCcce
Confidence 379999999999999999999999 99999999986666554
No 268
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.53 E-value=1.5e-06 Score=84.97 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=96.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||..|+.+|..|+.. +.+|+|+++.+....
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l~~------------------------------------------ 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPELKA------------------------------------------ 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccccc------------------------------------------
Confidence 4899999999999999999998 999999998743200
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
...+.+.+.+..|++++.++.++++..+++++.++...+. .+++..++.+|.|++|.|...... +
T Consensus 389 --~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~---------~~g~~~~i~~D~v~~~~G~~p~~~--~-- 453 (517)
T PRK15317 389 --DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDR---------TTGEEHHLELEGVFVQIGLVPNTE--W-- 453 (517)
T ss_pred --cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEEC---------CCCcEEEEEcCEEEEeECCccCch--H--
Confidence 0122334443479999999999999877677777766431 112346799999999999654321 1
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhc
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA 318 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 318 (321)
+... . . +.....+..+ .+.+...|++|++|+.+.... ...-..+..|.+||
T Consensus 454 -l~~~-v-~-~~~~g~i~vd-------~~l~Ts~p~IyAaGDv~~~~~------k~~~~A~~eG~~Aa 504 (517)
T PRK15317 454 -LKGT-V-E-LNRRGEIIVD-------ARGATSVPGVFAAGDCTTVPY------KQIIIAMGEGAKAA 504 (517)
T ss_pred -Hhhh-e-e-eCCCCcEEEC-------cCCCCCCCCEEECccccCCCC------CEEEEhhhhHHHHH
Confidence 1111 0 0 0000111111 123456799999999874321 11224445566655
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.52 E-value=1.3e-07 Score=90.82 Aligned_cols=40 Identities=43% Similarity=0.737 Sum_probs=36.3
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+||+|||+|++|+++|+.|++. |++|+|+|+...+||.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcE
Confidence 357999999999999999999999 9999999998777764
No 270
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.51 E-value=2.8e-06 Score=81.71 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=71.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||||..|+..|..|++. |.+|+|||+.+.+... ...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~d~ 207 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLRS--------------------------------------FDS 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCcc--------------------------------------cCH
Confidence 4899999999999999999999 9999999987532110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. +.|++++.++.++++..+++....+...+ ....+.+|.||+|+|...+
T Consensus 208 ~~~~~~~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~v~~~~-------------g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 208 MISETITEEYE-KEGINVHKLSKPVKVEKTVEGKLVIHFED-------------GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHH-HcCCEEEcCCEEEEEEEeCCceEEEEECC-------------CcEEEEcCEEEEeeCCCcC
Confidence 33445555554 67999999999999976543222233311 1156999999999995544
No 271
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.51 E-value=7.7e-07 Score=85.40 Aligned_cols=113 Identities=10% Similarity=0.146 Sum_probs=66.9
Q ss_pred cEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
+|||||||++|+++|..|++. ++.+|+|||+.+..+ |... ++++.... ......
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~---~~~~-------------------~~~~~~~~---~~~~~~ 56 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS---FGAC-------------------GLPYFVGG---FFDDPN 56 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce---eecC-------------------CCceEecc---ccCCHH
Confidence 599999999999999999985 246999999986532 1100 00000000 000111
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.....+.+. +.|++++.+++|+.+..+++.+. +.+ .. ++....+.+|++|+|||...
T Consensus 57 ~~~~~~~~~~~-~~gv~~~~~~~V~~id~~~~~v~---~~~------~~---~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 57 TMIARTPEEFI-KSGIDVKTEHEVVKVDAKNKTIT---VKN------LK---TGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HhhcCCHHHHH-HCCCeEEecCEEEEEECCCCEEE---EEE------CC---CCCEEEecCCEEEECCCCCC
Confidence 22222233343 56999999999999977665432 211 00 01112344999999999764
No 272
>PLN02507 glutathione reductase
Probab=98.51 E-value=2.7e-06 Score=82.83 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=87.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||+|..|+..|..|++. |.+|+|+++.+.+-.. ...
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~ 244 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLRG--------------------------------------FDD 244 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCcc--------------------------------------cCH
Confidence 3799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
++...+.+.+. +.|++++.++.++++..+++.+. +... ++.++.+|.||+|+|.......-+
T Consensus 245 ~~~~~l~~~l~-~~GI~i~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~pn~~~l~-- 306 (499)
T PLN02507 245 EMRAVVARNLE-GRGINLHPRTNLTQLTKTEGGIK-VITD--------------HGEEFVADVVLFATGRAPNTKRLN-- 306 (499)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCeEE-EEEC--------------CCcEEEcCEEEEeecCCCCCCCCC--
Confidence 33444455554 67999999999999986655432 2221 225799999999999655432100
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
+.+.++ .+.....+.++ .+.+...|++|++||.+.
T Consensus 307 -l~~~gl--~~~~~G~I~Vd-------~~~~Ts~p~IyAiGDv~~ 341 (499)
T PLN02507 307 -LEAVGV--ELDKAGAVKVD-------EYSRTNIPSIWAIGDVTN 341 (499)
T ss_pred -chhhCc--EECCCCcEecC-------CCCcCCCCCEEEeeEcCC
Confidence 111111 01011112222 233456899999999874
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.50 E-value=1.7e-07 Score=95.66 Aligned_cols=40 Identities=35% Similarity=0.537 Sum_probs=36.1
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
...||+|||||+||+++|+.|++. |++|+|+|+...+||.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence 357999999999999999999999 9999999998777764
No 274
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=2.2e-06 Score=82.14 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|.+|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 198 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR--------------------------------------EEP 198 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC--------------------------------------CCH
Confidence 3799999999999999999998 9999999997542110 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. +.|++++.+++++++..+++.+. +.. +..++.+|.||+|+|....
T Consensus 199 ~~~~~~~~~l~-~~GI~i~~~~~V~~i~~~~~~v~-v~~---------------~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYME-EDGITFLLNAHTTEVKNDGDQVL-VVT---------------EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHH-HcCCEEEcCCEEEEEEecCCEEE-EEE---------------CCeEEEcCEEEEeeCCCCC
Confidence 22333344444 67999999999999976555432 211 1257999999999996554
No 275
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.49 E-value=2.5e-07 Score=89.45 Aligned_cols=39 Identities=33% Similarity=0.564 Sum_probs=35.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
.++|+|||+|++|+++|..|++. |++|+|+|+.+.+||.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIGGL 181 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCce
Confidence 57999999999999999999999 9999999998877663
No 276
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.48 E-value=3.6e-06 Score=80.92 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=70.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+.+|..+++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~ 207 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILRG--------------------------------------FDD 207 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCcc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.++.+.++..+++.+ .+... ++.++.+|.||+|+|....
T Consensus 208 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 208 DMRALLARNME-GRGIRIHPQTSLTSITKTDDGL-KVTLS--------------HGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeE-EEEEc--------------CCcEeecCEEEEeeCCCcC
Confidence 33344455554 6799999999999997655432 22221 1257999999999995543
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.48 E-value=2.6e-06 Score=87.60 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=88.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||||..|+.+|..|++. |.+|.|||..+.+-.. . + ..
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~~----------------------~----l-----------d~ 187 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMAE----------------------Q----L-----------DQ 187 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchhh----------------------h----c-----------CH
Confidence 3799999999999999999999 9999999987531000 0 0 02
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~ 249 (321)
.....+.+.+. +.||+++.++.++++..++ +.+..+... ++.++.+|.||+|+|-..+..
T Consensus 188 ~~~~~l~~~L~-~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--------------dG~~i~~D~Vv~A~G~rPn~~---- 248 (847)
T PRK14989 188 MGGEQLRRKIE-SMGVRVHTSKNTLEIVQEGVEARKTMRFA--------------DGSELEVDFIVFSTGIRPQDK---- 248 (847)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCeEEEEEecCCCceEEEEEC--------------CCCEEEcCEEEECCCcccCch----
Confidence 23344445554 6899999999999987543 334444442 236799999999999554321
Q ss_pred hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.+.+.|+. +....++.++. +.+...|++|+.|+++..
T Consensus 249 -L~~~~Gl~--~~~~G~I~VD~-------~l~Ts~p~IYAiGD~a~~ 285 (847)
T PRK14989 249 -LATQCGLA--VAPRGGIVIND-------SCQTSDPDIYAIGECASW 285 (847)
T ss_pred -HHhhcCcc--CCCCCcEEECC-------CCcCCCCCEEEeecceeE
Confidence 22233321 11112233332 223457999999998754
No 278
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.47 E-value=1.6e-06 Score=78.27 Aligned_cols=152 Identities=17% Similarity=0.226 Sum_probs=93.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||+|..|+.+|..|++. +.+|.++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~----------------------------------------~-- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR----------------------------------------A-- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC----------------------------------------c--
Confidence 4899999999999999999998 99999999864210 0
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
...+.+.+.+..|++++.++.+.++..++ ++..+...+ . .+++..++.+|.||+|+|...+. ..++
T Consensus 179 --~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~---~~g~~~~i~~D~vi~a~G~~~~~--~~l~ 244 (300)
T TIGR01292 179 --EKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------T---VTGEEEELKVDGVFIAIGHEPNT--ELLK 244 (300)
T ss_pred --CHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------c---CCCceEEEEccEEEEeeCCCCCh--HHHH
Confidence 01233444433499999999999987543 555555421 0 11244789999999999954432 1222
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhc
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAA 318 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 318 (321)
.. .. ......+..+. +.+...|++|+.|+.+.. .+ ......+..|..||
T Consensus 245 ~~--~~----~~~~g~i~v~~-------~~~t~~~~vya~GD~~~~---~~---~~~~~A~~~g~~aa 293 (300)
T TIGR01292 245 GL--LE----LDEGGYIVTDE-------GMRTSVPGVFAAGDVRDK---GY---RQAVTAAGDGCIAA 293 (300)
T ss_pred Hh--he----ecCCCcEEECC-------CCccCCCCEEEeecccCc---ch---hhhhhhhhhHHHHH
Confidence 21 11 11111122221 123467999999998853 11 12334555666655
No 279
>PRK14694 putative mercuric reductase; Provisional
Probab=98.46 E-value=3.4e-06 Score=81.60 Aligned_cols=135 Identities=16% Similarity=0.253 Sum_probs=85.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+..|..|++. |.+|+|+++...... ...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~~~ 218 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ---------------------------------------EDP 218 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC---------------------------------------CCH
Confidence 4899999999999999999999 999999987421100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.++.+.++..+++.+. +... ..++.+|.||+|+|..+....-
T Consensus 219 ~~~~~l~~~l~-~~GI~v~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn~~~l--- 278 (468)
T PRK14694 219 AVGEAIEAAFR-REGIEVLKQTQASEVDYNGREFI-LETN---------------AGTLRAEQLLVATGRTPNTENL--- 278 (468)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEC---------------CCEEEeCEEEEccCCCCCcCCC---
Confidence 33444555554 67999999999999876555322 3221 1469999999999966543210
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.+.. . ....+..+. +.+...|++|+.||.+.
T Consensus 279 ~l~~~g~~--~-~~G~i~vd~-------~~~Ts~~~IyA~GD~~~ 313 (468)
T PRK14694 279 NLESIGVE--T-ERGAIRIDE-------HLQTTVSGIYAAGDCTD 313 (468)
T ss_pred CchhcCcc--c-CCCeEeeCC-------CcccCCCCEEEEeecCC
Confidence 11222221 0 111122222 23346799999999863
No 280
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.45 E-value=4.2e-06 Score=80.91 Aligned_cols=138 Identities=18% Similarity=0.271 Sum_probs=87.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+..|..|++. |.+|+|||+.+.+... ...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 218 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG--------------------------------------EDA 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC--------------------------------------CCH
Confidence 3799999999999999999999 9999999987532110 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.+++++++..+++.+. +... ++.++.+|.||+|+|........
T Consensus 219 ~~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~l~~D~vl~a~G~~pn~~~l--- 279 (466)
T PRK07845 219 DAAEVLEEVFA-RRGMTVLKRSRAESVERTGDGVV-VTLT--------------DGRTVEGSHALMAVGSVPNTAGL--- 279 (466)
T ss_pred HHHHHHHHHHH-HCCcEEEcCCEEEEEEEeCCEEE-EEEC--------------CCcEEEecEEEEeecCCcCCCCC---
Confidence 23334444454 67999999999999976665432 3221 12579999999999965543210
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.++. +.....+.++ .+.+...|++|+.|+.+.
T Consensus 280 ~l~~~gl~--~~~~G~i~Vd-------~~~~Ts~~~IyA~GD~~~ 315 (466)
T PRK07845 280 GLEEAGVE--LTPSGHITVD-------RVSRTSVPGIYAAGDCTG 315 (466)
T ss_pred CchhhCce--ECCCCcEeEC-------CCcccCCCCEEEEeeccC
Confidence 01122220 0001112222 123446799999998873
No 281
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.45 E-value=3.9e-07 Score=87.97 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=66.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..+|+|||+|++|+++|..|++. |.+|+|+|+.+.+||-.. +|++... ..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG~l~---------------------~gip~~~--------~~ 190 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIGGLLT---------------------FGIPSFK--------LD 190 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCceee---------------------ecCcccc--------CC
Confidence 57999999999999999999999 999999999987776321 1222110 11
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.++.....+.+. +.|++++.++.+..- +... .....+|.||+|+|...
T Consensus 191 ~~~~~~~~~~~~-~~Gv~~~~~~~v~~~---------~~~~---------------~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 191 KAVLSRRREIFT-AMGIEFHLNCEVGRD---------ISLD---------------DLLEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHHHHHHHHHH-HCCCEEECCCEeCCc---------cCHH---------------HHHhcCCEEEEEeCCCC
Confidence 234444455555 679999999766221 0000 02246899999999865
No 282
>PRK14727 putative mercuric reductase; Provisional
Probab=98.45 E-value=4.4e-06 Score=81.02 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=85.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+..|..|++. |.+|+|+++...... ...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~~---------------------------------------~d~ 228 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLFR---------------------------------------EDP 228 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCCc---------------------------------------chH
Confidence 4799999999999999999999 999999987421100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.|++++.+++++++..+++.+. +... ..++.+|.||+|+|.......-
T Consensus 229 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn~~~l--- 288 (479)
T PRK14727 229 LLGETLTACFE-KEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHANTHDL--- 288 (479)
T ss_pred HHHHHHHHHHH-hCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCCccCC---
Confidence 23345555554 67999999999999976665332 2221 1468999999999966543200
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.++ .+.....+.++. +.+...|++|+.||.+.
T Consensus 289 ~l~~~g~--~~~~~G~i~Vd~-------~~~Ts~~~IyA~GD~~~ 324 (479)
T PRK14727 289 NLEAVGV--TTDTSGAIVVNP-------AMETSAPDIYAAGDCSD 324 (479)
T ss_pred CchhhCc--eecCCCCEEECC-------CeecCCCCEEEeeecCC
Confidence 0111121 011111122222 23446799999999873
No 283
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=5.1e-06 Score=80.51 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 224 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLAA--------------------------------------ADE 224 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCCc--------------------------------------CCH
Confidence 4899999999999999999999 9999999997532100 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +.|++++.+++++++..+++.+. +...+ .+++..++.+|.||+|+|....
T Consensus 225 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~----------~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 225 QVAKEAAKAFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTD----------ADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEe----------CCCceeEEEcCEEEEccCCccC
Confidence 34445555555 57999999999999987665442 33221 0123357999999999995554
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.44 E-value=2e-06 Score=88.11 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=88.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||||..|+.+|..|++. |.+|.|+|+.+.+-.. . + ..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~~----------------------~----l-----------d~ 182 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMAK----------------------Q----L-----------DQ 182 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhhh----------------------h----c-----------CH
Confidence 4799999999999999999999 9999999987531000 0 0 01
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.....+.+.+. +.||+++.++.++++.. ++++.+|...+ +.++.+|.||+|+|-.....
T Consensus 183 ~~~~~l~~~l~-~~GV~v~~~~~v~~i~~-~~~~~~v~~~d--------------G~~i~~D~Vi~a~G~~Pn~~----- 241 (785)
T TIGR02374 183 TAGRLLQRELE-QKGLTFLLEKDTVEIVG-ATKADRIRFKD--------------GSSLEADLIVMAAGIRPNDE----- 241 (785)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCceEEEEc-CCceEEEEECC--------------CCEEEcCEEEECCCCCcCcH-----
Confidence 22334444444 67999999999988864 34555666532 25799999999999554321
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.+.+.++. + ..++.++. +.+...|++|+.|+.+..
T Consensus 242 la~~~gl~--~--~ggI~Vd~-------~~~Ts~p~IyA~GD~a~~ 276 (785)
T TIGR02374 242 LAVSAGIK--V--NRGIIVND-------SMQTSDPDIYAVGECAEH 276 (785)
T ss_pred HHHhcCCc--c--CCCEEECC-------CcccCCCCEEEeeeccee
Confidence 12222321 1 12333332 123457999999988753
No 285
>PLN02487 zeta-carotene desaturase
Probab=98.43 E-value=7.4e-06 Score=80.58 Aligned_cols=38 Identities=37% Similarity=0.513 Sum_probs=35.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
.+|+|||||++|+++|+.|++. |++|+|+|+.+.+||.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGGK 113 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCCc
Confidence 5999999999999999999999 9999999999888763
No 286
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=5e-06 Score=80.48 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=70.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||||..|+..|..|++. |.+|+|||+.+.+... ...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il~~--------------------------------------~d~ 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVIPA--------------------------------------ADK 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCCc--------------------------------------CCH
Confidence 3899999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++.+.+.+.+. +. ++++.++.++.+..+++.+. +...+ . +++..++.+|.||+|+|..++
T Consensus 216 ~~~~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~------~----~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 216 DIVKVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEG------K----KAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred HHHHHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEe------C----CCcceEEEeCEEEEeeccccc
Confidence 34445555554 44 99999999999876655432 32211 0 112357999999999996544
No 287
>PRK13748 putative mercuric reductase; Provisional
Probab=98.43 E-value=3.9e-06 Score=82.98 Aligned_cols=136 Identities=14% Similarity=0.201 Sum_probs=85.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+..|..|++. |.+|+||++...... ...
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~---------------------------------------~d~ 310 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFFR---------------------------------------EDP 310 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCccccc---------------------------------------cCH
Confidence 4799999999999999999999 999999997521100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
++...+.+.+. +.|++++.++.++++..+++.+. +... ..++.+|.||+|+|.......-
T Consensus 311 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn~~~l--- 370 (561)
T PRK13748 311 AIGEAVTAAFR-AEGIEVLEHTQASQVAHVDGEFV-LTTG---------------HGELRADKLLVATGRAPNTRSL--- 370 (561)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEE-EEec---------------CCeEEeCEEEEccCCCcCCCCc---
Confidence 23344555554 67999999999999876665432 2221 1369999999999955443200
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.++ .+.....+.++. +.+...|++|++|+.+.
T Consensus 371 ~l~~~g~--~~~~~g~i~vd~-------~~~Ts~~~IyA~GD~~~ 406 (561)
T PRK13748 371 ALDAAGV--TVNAQGAIVIDQ-------GMRTSVPHIYAAGDCTD 406 (561)
T ss_pred CchhcCc--eECCCCCEeECC-------CcccCCCCEEEeeecCC
Confidence 0111221 011111122222 23446799999999873
No 288
>PRK07846 mycothione reductase; Reviewed
Probab=98.43 E-value=4.7e-06 Score=80.16 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=84.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||||..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~ 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLRH--------------------------------------LDD 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence 4899999999999999999999 9999999987532100 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
++.+.+. ++. +.+++++.+++++++..+++.+. +... ++.++.+|.||+|+|....... +
T Consensus 208 ~~~~~l~-~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn~~~--l- 267 (451)
T PRK07846 208 DISERFT-ELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLD--------------DGSTVEADVLLVATGRVPNGDL--L- 267 (451)
T ss_pred HHHHHHH-HHH-hcCeEEEeCCEEEEEEEcCCEEE-EEEC--------------CCcEeecCEEEEEECCccCccc--c-
Confidence 2223332 333 35799999999999876655332 2221 2257999999999996554321 0
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.++ .+.....+.++ .+.+...|++|++|+.+.
T Consensus 268 ~~~~~gl--~~~~~G~i~Vd-------~~~~Ts~p~IyA~GD~~~ 303 (451)
T PRK07846 268 DAAAAGV--DVDEDGRVVVD-------EYQRTSAEGVFALGDVSS 303 (451)
T ss_pred CchhcCc--eECCCCcEeEC-------CCcccCCCCEEEEeecCC
Confidence 0111111 01001112222 233456899999999863
No 289
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.41 E-value=1.5e-06 Score=82.01 Aligned_cols=100 Identities=27% Similarity=0.302 Sum_probs=75.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
.+++|||+|+.|+.+|..|.+. |++|+++|+.+.+++.... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~~-------------------------------------~ 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLLD-------------------------------------P 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhhh-------------------------------------H
Confidence 6999999999999999999999 9999999999876553210 2
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEE--EEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG--VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. ..|++++.++.+.++...++.... +... ....+.+|.++++.|...+
T Consensus 179 ~~~~~~~~~l~-~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 179 EVAEELAELLE-KYGVELLLGTKVVGVEGKGNTLVVERVVGI--------------DGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHHHHHH-HCCcEEEeCCceEEEEcccCcceeeEEEEe--------------CCcEEEeeEEEEeeccccc
Confidence 23344444444 678999999999999876654443 2222 2378999999999996654
No 290
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.41 E-value=6.1e-07 Score=86.50 Aligned_cols=37 Identities=41% Similarity=0.580 Sum_probs=34.1
Q ss_pred ccEEEECCChHHHHHHHHhhc--CCCCeEEEEeccCCCCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSK--NPNIQIAIIEQSVSPGG 128 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~--~~G~~V~liEk~~~~gg 128 (321)
.+|+|||+||||+.||..|++ . |.+|+|+|+.+.+||
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG 65 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence 589999999999999999986 6 999999999988876
No 291
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=6.2e-06 Score=79.13 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 199 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLPR--------------------------------------EDR 199 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCC--------------------------------------cCH
Confidence 3899999999999999999999 9999999987432100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.+...+.+.+. +.|++++.++.+.++..+++.+. +... ..++.+|.||+|+|....
T Consensus 200 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 200 DIADNIATILR-DQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcC
Confidence 33445555555 67999999999999987665432 2221 135889999999996654
No 292
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.39 E-value=5.3e-06 Score=79.57 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=84.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+++|||||..|+..|..|++. |.+|+|+++.+.+... + ..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~~---------------------------~-----------d~ 189 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINKL---------------------------M-----------DA 189 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccchh---------------------------c-----------CH
Confidence 4799999999999999999999 9999999987532110 0 02
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
++...+.+.+. +.|++++.++.++++. +. .+.+.+ +.++.+|.||+|+|......
T Consensus 190 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~--~~---~v~~~~--------------g~~~~~D~vl~a~G~~pn~~----- 244 (438)
T PRK13512 190 DMNQPILDELD-KREIPYRLNEEIDAIN--GN---EVTFKS--------------GKVEHYDMIIEGVGTHPNSK----- 244 (438)
T ss_pred HHHHHHHHHHH-hcCCEEEECCeEEEEe--CC---EEEECC--------------CCEEEeCEEEECcCCCcChH-----
Confidence 33344555554 6799999999999884 22 233321 25689999999999554321
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.+. .+.....+.++. +.+...|++|+.||.+.
T Consensus 245 ~l~~~gl--~~~~~G~i~Vd~-------~~~t~~~~IyA~GD~~~ 280 (438)
T PRK13512 245 FIESSNI--KLDDKGFIPVND-------KFETNVPNIYAIGDIIT 280 (438)
T ss_pred HHHhcCc--ccCCCCcEEECC-------CcccCCCCEEEeeeeEE
Confidence 2333332 011111122222 12335689999999875
No 293
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.39 E-value=6.7e-06 Score=79.78 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=69.8
Q ss_pred ccEEEECCChHHHHHHHHh---hcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEe
Q 020815 91 TDVVVVGAGSAGLSCAYEL---SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~L---a~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 167 (321)
-.++|||||..|+..|..+ .+. |.+|+|||+.+.+...
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccccc--------------------------------------
Confidence 4799999999999999755 345 8999999987542110
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
...++.+.+.+.+. +.|++++.++.++++..+++....+... ++.++.+|.||+|+|...+
T Consensus 229 ~d~~~~~~l~~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~--------------~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 229 FDSTLRKELTKQLR-ANGINIMTNENPAKVTLNADGSKHVTFE--------------SGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred cCHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEc--------------CCCEEEcCEEEEeeCCCcC
Confidence 01344455666665 6799999999999997654433333332 1257999999999996554
No 294
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.39 E-value=6.1e-06 Score=80.41 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=68.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
+++|||+|..|+..|..|++. |.+|+|+++.. +... ...+
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~-~l~~--------------------------------------~d~~ 223 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRSI-PLRG--------------------------------------FDRQ 223 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCc-cccc--------------------------------------CCHH
Confidence 799999999999999999999 99999998642 1000 0022
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.+.+.+.+. +.|++++.++.+.++...++.+ .+...+ +.++.+|.||+|+|..+.
T Consensus 224 ~~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~-~v~~~~--------------g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 224 CSEKVVEYMK-EQGTLFLEGVVPINIEKMDDKI-KVLFSD--------------GTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHH-HcCCEEEcCCeEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEEeeCCCCC
Confidence 3345555554 6799999999998887655432 233321 246899999999995543
No 295
>PTZ00058 glutathione reductase; Provisional
Probab=98.38 E-value=8e-06 Score=80.37 Aligned_cols=139 Identities=9% Similarity=0.087 Sum_probs=87.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~~--------------------------------------~d~ 278 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLRK--------------------------------------FDE 278 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccccccc--------------------------------------CCH
Confidence 4799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~ 249 (321)
++.+.+.+.+. +.|++++.++.+.++..+++ .+. +...+ ...++.+|.||+|+|.......-
T Consensus 279 ~i~~~l~~~L~-~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~Pn~~~L-- 341 (561)
T PTZ00058 279 TIINELENDMK-KNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSPNTEDL-- 341 (561)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCCCcccc--
Confidence 33445555554 67999999999999875433 222 11111 12579999999999954432200
Q ss_pred hhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.+.+.+. ......+.++ .+.+...|++|+.||.+..
T Consensus 342 -~l~~~~~---~~~~G~I~VD-------e~lqTs~p~IYA~GDv~~~ 377 (561)
T PTZ00058 342 -NLKALNI---KTPKGYIKVD-------DNQRTSVKHIYAVGDCCMV 377 (561)
T ss_pred -Cccccce---ecCCCeEEEC-------cCCccCCCCEEEeEeccCc
Confidence 0011110 0111112222 2234568999999999863
No 296
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.38 E-value=4e-06 Score=78.79 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=66.8
Q ss_pred ccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.||||||||+||+.+|..|.+. +..+|+||++.+..- +.. .... ..+. .+. ..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~---y~~-~~l~---------~~~~-~~~------------~~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE---YNK-PDLS---------HVFS-QGQ------------RA 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC---cCc-CcCc---------HHHh-CCC------------CH
Confidence 4899999999999999999873 367899999875210 100 0000 0000 000 11
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.++.....+...++.|++++.+++|+.+..++..+. + +..++.+|+||+|||...
T Consensus 57 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~---~---------------~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 57 DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK---S---------------QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEE---E---------------CCeEEeCCEEEECCCCCC
Confidence 222221122333357999999999999876554332 2 125799999999999764
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=98.37 E-value=7.7e-06 Score=75.08 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=98.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||+|..|+.+|..|++. +.+|+++++.+.... . .
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~~~---------------------------------------~-~ 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA---------------------------------------E-K 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCccCC---------------------------------------C-H
Confidence 4899999999999999999999 999999998742100 0 1
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.+++++.++.++++..+++.+.++....+ . ..++..++.+|.||+|.|......
T Consensus 186 ~~~~~~~~~l~-~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~--~~~~~~~i~~D~vv~a~G~~p~~~----- 251 (321)
T PRK10262 186 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------Q--NSDNIESLDVAGLFVAIGHSPNTA----- 251 (321)
T ss_pred HHHHHHHhhcc-CCCeEEEeCCEEEEEEcCCccEEEEEEEEc------C--CCCeEEEEECCEEEEEeCCccChh-----
Confidence 12234444554 679999999999999765556666665421 0 011235799999999999554322
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcCCCCCCCcceeeeeeecchhcc
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAR 319 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (321)
+...++ .+ ....+..+. . ....+.+...|++|+.||.+... ....-..+-.|.+||.
T Consensus 252 -l~~~~l--~~-~~g~i~vd~-~-~~~~~~~t~~~~VyA~GD~~~~~------~~~~~~A~~~g~~Aa~ 308 (321)
T PRK10262 252 -IFEGQL--EL-ENGYIKVQS-G-IHGNATQTSIPGVFAAGDVMDHI------YRQAITSAGTGCMAAL 308 (321)
T ss_pred -Hhhccc--cc-cCCEEEECC-C-CcccccccCCCCEEECeeccCCC------cceEEEEehhHHHHHH
Confidence 111111 01 011122221 0 01113456789999999987311 1223335666666653
No 298
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.37 E-value=1e-06 Score=83.29 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
.+|||||||++|+.||..|++. +. +|+||++..... +.... .. ..++... ... ... ...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~---y~r~~-l~--------~~~~~~~--~~~---~~~-~~~ 64 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLP---YERPP-LS--------KSMLLED--SPQ---LQQ-VLP 64 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCC---CCCCC-CC--------HHHHCCC--Ccc---ccc-cCC
Confidence 5899999999999999999987 54 799999875321 10000 00 0011100 000 000 000
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
. +.. ++.+++++.++.|+.+..++..+ .+. ++.++.+|++|+|||...
T Consensus 65 -~-------~~~-~~~~i~~~~g~~V~~id~~~~~v---~~~--------------~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 65 -A-------NWW-QENNVHLHSGVTIKTLGRDTREL---VLT--------------NGESWHWDQLFIATGAAA 112 (396)
T ss_pred -H-------HHH-HHCCCEEEcCCEEEEEECCCCEE---EEC--------------CCCEEEcCEEEEccCCCC
Confidence 1 112 24699999999998887655432 222 125799999999999765
No 299
>PLN02268 probable polyamine oxidase
Probab=98.37 E-value=7.3e-07 Score=85.33 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=37.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~ 132 (321)
+|+|||||++||+||+.|.+. |++|+|+|+++.+||..+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCceeee
Confidence 799999999999999999998 9999999999999998753
No 300
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.35 E-value=1.1e-06 Score=81.74 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=35.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||+|++|+.+|..|++. |.+|+|+|+.+.++|.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~ 56 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGGL 56 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCce
Confidence 45999999999999999999999 9999999998877653
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.35 E-value=1.2e-05 Score=77.41 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=87.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||||..|+-+|..|.+. |.+|+|+++..... +. ..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~-----------------------------~~--------~~-- 312 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED-----------------------------MT--------AR-- 312 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc-----------------------------CC--------CC--
Confidence 4899999999999999999999 99999999874200 00 00
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
...++.+. +.||++++++.++++..+ ++++.++.+...... .+.++. ..++..++.+|.||+|.|-...
T Consensus 313 ---~~~~~~l~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 313 ---VEEIAHAE-EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred ---HHHHHHHH-hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 11123343 679999999999998764 567877766421000 000000 0123457999999999995432
Q ss_pred CcchhhhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 244 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 244 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
. ..+.+.++. +.....+..+. ..+...|++|+.|+.+.
T Consensus 389 ~-----~~l~~~gl~--~~~~G~i~vd~-------~~~Ts~~~VfA~GD~~~ 426 (449)
T TIGR01316 389 P-----IMAETTRLK--TSERGTIVVDE-------DQRTSIPGVFAGGDIIL 426 (449)
T ss_pred c-----hhhhccCcc--cCCCCeEEeCC-------CCccCCCCEEEecCCCC
Confidence 1 112222220 11111121221 12345799999999873
No 302
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.34 E-value=8.7e-06 Score=78.36 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=67.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+..|..|++. |.+|+|||+.+.+... + ..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~~---------------------------~-----------d~ 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLRH---------------------------L-----------DE 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccccc---------------------------c-----------CH
Confidence 4899999999999999999999 9999999987532100 0 01
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+. ++. +.+++++.++.++++..+++.+. +... ++.++.+|.||+|+|....
T Consensus 211 ~~~~~l~-~~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFT-EIA-KKKWDIRLGRNVTAVEQDGDGVT-LTLD--------------DGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHH-HHH-hcCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCCEEEcCEEEEeeccCcC
Confidence 2223333 233 35799999999999976655432 2221 1257999999999995544
No 303
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.32 E-value=1.2e-06 Score=89.56 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=34.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
...|+|||+||||+++|++|++. |++|+|+|+....|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEccccccccc
Confidence 56999999999999999999999 9999999997655443
No 304
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.32 E-value=3.8e-06 Score=78.60 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCC------------CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP------------NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD 158 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~------------G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~ 158 (321)
.+++|||||+.|...|-+|++.- .++|.|||+.+.+--
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 57999999999999999987520 248899998864211
Q ss_pred cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
.....+.....+.+ ++.||+++.++.|+++.. + +|.+.+ ++ .+|.++.+|.|+
T Consensus 206 --------~~~~~l~~~a~~~L-~~~GV~v~l~~~Vt~v~~--~---~v~~~~------------g~-~~I~~~tvvWaa 258 (405)
T COG1252 206 --------MFPPKLSKYAERAL-EKLGVEVLLGTPVTEVTP--D---GVTLKD------------GE-EEIPADTVVWAA 258 (405)
T ss_pred --------CCCHHHHHHHHHHH-HHCCCEEEcCCceEEECC--C---cEEEcc------------CC-eeEecCEEEEcC
Confidence 01133334433334 478999999999999843 3 344432 11 269999999999
Q ss_pred CCCCC
Q 020815 239 GHDGP 243 (321)
Q Consensus 239 G~~~~ 243 (321)
|-.++
T Consensus 259 Gv~a~ 263 (405)
T COG1252 259 GVRAS 263 (405)
T ss_pred CCcCC
Confidence 96665
No 305
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.32 E-value=1.3e-05 Score=77.39 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||+|..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 210 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILPL--------------------------------------EDP 210 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc--------------------------------------hhH
Confidence 4899999999999999999999 9999999997532110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
++...+.+.+. +. ++++.++.+.++..+++ ..+.... .+++..++.+|.||+|+|....
T Consensus 211 ~~~~~~~~~l~-~~-I~i~~~~~v~~i~~~~~--~~v~~~~----------~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 211 EVSKQAQKILS-KE-FKIKLGAKVTSVEKSGD--EKVEELE----------KGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred HHHHHHHHHHh-hc-cEEEcCCEEEEEEEcCC--ceEEEEE----------cCCceEEEEeCEEEEccCCccC
Confidence 33445555554 56 99999999999976544 1222110 0113467999999999995443
No 306
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.32 E-value=4e-06 Score=80.02 Aligned_cols=93 Identities=24% Similarity=0.299 Sum_probs=65.3
Q ss_pred cEEEECCChHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD 158 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~ 158 (321)
.++|||||+.|+..|..|++. ++.+|+|||+.+.+...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 799999999999999998751 27899999987532110
Q ss_pred cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
....+.+.+.+.+. +.||+++.+++++++. ++. +.+.+ +.++.+|.||+|+
T Consensus 226 ---------~~~~~~~~~~~~L~-~~gV~v~~~~~v~~v~--~~~---v~~~~--------------g~~i~~d~vi~~~ 276 (424)
T PTZ00318 226 ---------FDQALRKYGQRRLR-RLGVDIRTKTAVKEVL--DKE---VVLKD--------------GEVIPTGLVVWST 276 (424)
T ss_pred ---------CCHHHHHHHHHHHH-HCCCEEEeCCeEEEEe--CCE---EEECC--------------CCEEEccEEEEcc
Confidence 01223444455554 6899999999998874 332 33321 2579999999999
Q ss_pred CCCC
Q 020815 239 GHDG 242 (321)
Q Consensus 239 G~~~ 242 (321)
|...
T Consensus 277 G~~~ 280 (424)
T PTZ00318 277 GVGP 280 (424)
T ss_pred CCCC
Confidence 9544
No 307
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=7.2e-07 Score=79.38 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=38.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
+|++|||+|.+|+..|..|++. |.+|+||||++.+||+|+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccc
Confidence 7999999999999999999999 999999999999999985
No 308
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.31 E-value=1.5e-05 Score=77.39 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=68.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
.++|||||..|+.+|..|++. |.+|+|+++...... ...+
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~~---------------------------------------~d~~ 221 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG---------------------------------------FDQD 221 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEecccccc---------------------------------------cCHH
Confidence 699999999999999999999 999999987421000 0123
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+.+.+.+.+. +.|++++.++.++++...++.+. +...++ . ...++.+|.||+|+|....
T Consensus 222 ~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~~~------~-----~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 222 CANKVGEHME-EHGVKFKRQFVPIKVEQIEAKVK-VTFTDS------T-----NGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHH-HcCCEEEeCceEEEEEEcCCeEE-EEEecC------C-----cceEEEeCEEEEEecCCcC
Confidence 3445555554 67999999999888876555332 332210 0 1247999999999995543
No 309
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.30 E-value=6.9e-06 Score=75.48 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+...+...|.+.+. +.|++++.+++|+++..+++++.+|.+.. .+++||.||+|+|.+..
T Consensus 135 ~p~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTPS---------------GDVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcCC---------------CEEECCEEEEcCChhhh
Confidence 45677788888876 67999999999999998888888887632 47999999999997654
No 310
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.30 E-value=1.3e-06 Score=84.78 Aligned_cols=38 Identities=34% Similarity=0.590 Sum_probs=35.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg 128 (321)
..+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence 46999999999999999999999 999999999887765
No 311
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=7.2e-07 Score=86.20 Aligned_cols=40 Identities=35% Similarity=0.559 Sum_probs=37.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..+|||||||++||+||.+|.+. |.+|+|+|.++.+||..
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGRI 54 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCcee
Confidence 57999999999999999999999 99999999999999765
No 312
>PLN02546 glutathione reductase
Probab=98.30 E-value=1.3e-05 Score=78.94 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=84.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~ 293 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLRG--------------------------------------FDE 293 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccccccc--------------------------------------cCH
Confidence 3799999999999999999998 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+.+. +.||+++.++.+.++..+++....+... +.....+|.||+|+|...+...-
T Consensus 294 ~~~~~l~~~L~-~~GV~i~~~~~v~~i~~~~~g~v~v~~~--------------~g~~~~~D~Viva~G~~Pnt~~L--- 355 (558)
T PLN02546 294 EVRDFVAEQMS-LRGIEFHTEESPQAIIKSADGSLSLKTN--------------KGTVEGFSHVMFATGRKPNTKNL--- 355 (558)
T ss_pred HHHHHHHHHHH-HCCcEEEeCCEEEEEEEcCCCEEEEEEC--------------CeEEEecCEEEEeeccccCCCcC---
Confidence 33344555554 6799999999999987643322223221 11334589999999955542200
Q ss_pred hhhhcCCcccccCCceeecccccchhhcccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.+. .+.....+.++. +.+...|++|+.||.+.
T Consensus 356 ~le~~gl--~~d~~G~I~VD~-------~l~Ts~p~IYAaGDv~~ 391 (558)
T PLN02546 356 GLEEVGV--KMDKNGAIEVDE-------YSRTSVPSIWAVGDVTD 391 (558)
T ss_pred ChhhcCC--cCCCCCcEeECC-------CceeCCCCEEEeeccCC
Confidence 0112221 010011122222 23446799999999874
No 313
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.30 E-value=7.9e-07 Score=83.03 Aligned_cols=40 Identities=30% Similarity=0.532 Sum_probs=37.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
+||+|||||++|+++|+.|++. |.+|+|||++..+||.|+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 999999999988888663
No 314
>PRK07208 hypothetical protein; Provisional
Probab=98.29 E-value=8.1e-07 Score=86.10 Aligned_cols=40 Identities=40% Similarity=0.688 Sum_probs=37.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..||+|||||++||+||+.|++. |++|+|+|+.+.+||.+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence 57999999999999999999999 99999999999998864
No 315
>PRK12831 putative oxidoreductase; Provisional
Probab=98.28 E-value=2e-05 Score=76.04 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=71.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||||..|+-+|..|.+. |.+|+|+++..... + + ....
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~---m------------------------~----------a~~~ 323 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE---L------------------------P----------ARVE 323 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc---C------------------------C----------CCHH
Confidence 4899999999999999999999 99999999763200 0 0 0001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecce-ecccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+ ++.+. +.|+++++.+.++++..+ ++++.++.+..... ..+.++. .+++..++.+|.||+|.|-..
T Consensus 324 e-----~~~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 324 E-----VHHAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred H-----HHHHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence 1 12233 579999999999998764 56788877642100 0010100 022345799999999999544
No 316
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.1e-05 Score=68.33 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhhhh
Q 020815 174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK 253 (321)
Q Consensus 174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~~~ 253 (321)
..+.++++++++|++++++.+++..-+.+.+.++...+ . ..|+...+..+-+..+-|+....-
T Consensus 196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn------~---~tge~~dl~v~GlFf~IGH~Pat~-------- 258 (322)
T KOG0404|consen 196 KIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKN------V---KTGEETDLPVSGLFFAIGHSPATK-------- 258 (322)
T ss_pred HHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEe------c---ccCcccccccceeEEEecCCchhh--------
Confidence 56778888899999999998888766655555665543 2 223557789999999999654321
Q ss_pred hcCCcccccCCceeecccccchhhc--ccccccccccccccchh
Q 020815 254 SIGMIEEVPGMKALDMNSAEDAIVR--LTREVVPGMIVTGMEVA 295 (321)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~g~~~~ 295 (321)
++.+...+ +...+.+.. .....+||+|..|+.+.
T Consensus 259 ------~l~gqve~--d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 259 ------FLKGQVEL--DEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred ------HhcCceee--ccCceEEeccCcccccccceeeccccch
Confidence 23332222 222222222 34457899999998763
No 317
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.26 E-value=2.2e-05 Score=75.65 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+-+|..|.+. |. +|+++++..... + +. .
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~---~------------------------~~----------~- 314 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE---M------------------------PA----------S- 314 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---C------------------------CC----------C-
Confidence 4899999999999999999998 77 899999863210 0 00 0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecce-ecccCCC----CCCCceEEEcCeEEEcCCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQ----SCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~-~~~~~~~----~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
. ...+.+. +.||+++.++.+.++..+++.+.+|.+..... ..+.++. .+++..++.+|.||+|.|....
T Consensus 315 ~----~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 315 E----EEVEHAK-EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred H----HHHHHHH-HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 0 0123333 67999999999999876666555565432100 0000000 0124468999999999995543
No 318
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.23 E-value=1.3e-05 Score=76.50 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=68.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..+|||||||.+|+.+|..|.+. +.+|+|||+.+.. .+. + .+-+... +. ...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~---------~~~------~---~l~~~~~-----g~----~~~ 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM---------LFT------P---LLPQTTT-----GT----LEF 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc---------chh------h---hHHHhcc-----cC----CCh
Confidence 46999999999999999999876 7999999987531 000 0 0101000 00 011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..+...+.+.+ +..+++++.+ +|++|..+++.+.-..... +.. .+.++.++.+|++|+|+|...
T Consensus 62 ~~~~~~~~~~~-~~~~~~~i~~-~V~~Id~~~~~v~~~~~~~-----~~~--~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 62 RSICEPVRPAL-AKLPNRYLRA-VVYDVDFEEKRVKCGVVSK-----SNN--ANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHhHHHHHHHh-ccCCeEEEEE-EEEEEEcCCCEEEEecccc-----ccc--ccCCceEecCCEEEECCCccc
Confidence 22333333333 3567888766 8999877776543211000 000 001336799999999999764
No 319
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.22 E-value=2.2e-06 Score=81.89 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=34.2
Q ss_pred cccEEEECCChHHHHHHHHhh-cCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La-~~~G~~V~liEk~~~~gg~ 129 (321)
...|+|||+||||+.||.+|. +. |.+|.|+|+.+.+||-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCccE
Confidence 357999999999999999765 56 9999999999988863
No 320
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.22 E-value=2e-06 Score=86.22 Aligned_cols=39 Identities=36% Similarity=0.674 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||+|++|+++|+.|++. |++|+|+|+.+.+||-
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCCCe
Confidence 57899999999999999999999 9999999999877763
No 321
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.20 E-value=1.3e-06 Score=83.71 Aligned_cols=38 Identities=39% Similarity=0.672 Sum_probs=35.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGA 130 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~ 130 (321)
+|+|||||++||+||+.|++. | .+|+|+|+++.+||.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcceE
Confidence 699999999999999999997 6 8999999999998865
No 322
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.19 E-value=3.3e-05 Score=77.31 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=70.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||..|+..|..|++. |.+|+|||+.+.+... ...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~~--------------------------------------~d~ 353 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLPL--------------------------------------LDA 353 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccc--------------------------------------CCH
Confidence 3799999999999999999999 9999999997542110 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECC-EEEEEEEeecceecccCCCC-CC------CceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQS-CM------DPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~-~v~gv~~~~~~~~~~~~~~~-~g------~~~~i~a~~VI~AtG~~~ 242 (321)
++...+.+.+.++.||+++.++.|.++..+++ ....+.... ..++. ++ +..++.+|.||+|+|...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~------~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE------RQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec------cccccccccccccccceEEEcCEEEEEECccc
Confidence 23334444443467999999999999976543 111122110 00000 00 124799999999999554
Q ss_pred C
Q 020815 243 P 243 (321)
Q Consensus 243 ~ 243 (321)
.
T Consensus 428 n 428 (659)
T PTZ00153 428 N 428 (659)
T ss_pred C
Confidence 4
No 323
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=3.5e-05 Score=72.62 Aligned_cols=141 Identities=23% Similarity=0.236 Sum_probs=76.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCC--CCeEEEEeccCCCCCccccCcccc--------hhhhcc-----chHHHHHHHcCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP--NIQIAIIEQSVSPGGGAWLGGQLF--------SAMVVR-----KPAHIFLDELGI 155 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~--G~~V~liEk~~~~gg~~~~~g~~~--------~~~~~~-----~~~~~~l~~~g~ 155 (321)
++|+|||+|++|+.+|.+|.+.+ ..++.|+|+....|.+.-...... ..+-.. ....+||...+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 58999999999999999998842 234999999988775532221111 011111 135678877633
Q ss_pred CcccC------CC-eEEEecHHHHHHHHHHHHHcCCC---cEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCC
Q 020815 156 DYDEQ------DN-YVVIKHAALFTSTIMSKLLARPN---VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (321)
Q Consensus 156 ~~~~~------~~-~~~~~~~~~~~~~l~~~~~~~~g---v~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (321)
.+... .. |....-..+|....++.+.++.- +.. ..++++++..+++-.....+.+ +
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~-------------~ 147 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTA-------------D 147 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecC-------------C
Confidence 32211 11 11111112333333333332211 333 3446666666532222222221 3
Q ss_pred ceEEEcCeEEEcCCCCCCCc
Q 020815 226 PNVMEAKVVVSSCGHDGPFG 245 (321)
Q Consensus 226 ~~~i~a~~VI~AtG~~~~~~ 245 (321)
+....|+.+|+|||+.-+..
T Consensus 148 g~~~~ad~~Vlatgh~~~~~ 167 (474)
T COG4529 148 GPSEIADIIVLATGHSAPPA 167 (474)
T ss_pred CCeeeeeEEEEeccCCCCCc
Confidence 46788999999999876544
No 324
>PRK13984 putative oxidoreductase; Provisional
Probab=98.15 E-value=3.8e-06 Score=83.82 Aligned_cols=39 Identities=38% Similarity=0.670 Sum_probs=35.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
..+|+|||+|++|+++|..|++. |++|+|+|+...+||.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGGV 321 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCce
Confidence 56899999999999999999999 9999999998877663
No 325
>PLN02576 protoporphyrinogen oxidase
Probab=98.15 E-value=2.5e-06 Score=83.06 Aligned_cols=42 Identities=36% Similarity=0.594 Sum_probs=37.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
++||+|||||++||++|++|++..|.+|+|+|+.+.+||.++
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 579999999999999999999852599999999999998753
No 326
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.14 E-value=1.9e-05 Score=73.76 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=64.9
Q ss_pred cEEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 92 DVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.|||||||++|+.+|..|.++ ++.+|+|||++...- + ...+ ..++. | ....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~------~~~~-----~~~~~--g-----------~~~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---Y------SGML-----PGMIA--G-----------HYSL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---c------cchh-----hHHHh--e-----------eCCH
Confidence 489999999999999999642 378999999875310 0 0000 00110 0 0011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.++...+.+.+ ++.|++++.+ +|+.+..++.. |.+. ++.+++.|++|+|||....
T Consensus 54 ~~~~~~~~~~~-~~~gv~~~~~-~v~~id~~~~~---V~~~--------------~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 54 DEIRIDLRRLA-RQAGARFVIA-EATGIDPDRRK---VLLA--------------NRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHhcccHHHHH-HhcCCEEEEE-EEEEEecccCE---EEEC--------------CCCcccccEEEEccCCCCC
Confidence 22222223333 3578999876 78888766653 3332 1256899999999997653
No 327
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.13 E-value=3.2e-05 Score=69.79 Aligned_cols=39 Identities=33% Similarity=0.593 Sum_probs=34.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.-+|.|||+|++||+||+.|+++ .+|+|+|.+...||-.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCcc
Confidence 45899999999999999999997 8999999998887643
No 328
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.11 E-value=8.6e-06 Score=74.13 Aligned_cols=39 Identities=38% Similarity=0.592 Sum_probs=34.5
Q ss_pred cccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg 128 (321)
...|+|||+||||+.+|..|.+ .++++|.|+|+.+.+.|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 3589999999999999999888 35899999999988766
No 329
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.10 E-value=3.2e-06 Score=81.50 Aligned_cols=41 Identities=34% Similarity=0.597 Sum_probs=36.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCC---CCeEEEEeccCCCCCccc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~liEk~~~~gg~~~ 131 (321)
.||+|||||++||++|+.|++.. |.+|+|+|+++.+||.++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 58999999999999999999862 799999999999988753
No 330
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.10 E-value=3.4e-05 Score=74.70 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=71.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+-+|..+.+. |. +|++++....+.... +.. ..+..+ .
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~--------------------------~~~-~~~~~~--~ 331 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQ-GAKSVTQRDIMPMPPSRR--------------------------NKN-NPWPYW--P 331 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEccccCCCcccc--------------------------ccc-cCCccc--c
Confidence 4799999999999999988887 65 788777653221100 000 000000 0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC--CCCCCCceEEEcCeEEEcCCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
.. ...+.+. +.|+++++++.++++..+++++.+|..... ..... ....++..++.+|.||+|+|....
T Consensus 332 ~~---~~~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~--~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 332 MK---LEVSNAH-EEGVEREFNVQTKEFEGENGKVTGVKVVRT--ELGEGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred hH---HHHHHHH-HcCCeEEeccCceEEEccCCEEEEEEEEEE--EecCCCccccCCceEEEECCEEEECcCcCCC
Confidence 00 1123333 579999999999999766788888876421 11000 001124478999999999995543
No 331
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.10 E-value=5.8e-05 Score=73.93 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+...+...+.+.+. +.|++++++++|+++..+++++.+|.+.+. .+++..+++|+.||+|+|.++
T Consensus 126 dp~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~---------~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 126 DPFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVEDH---------KTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CHHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEEc---------CCCcEEEEEcCEEEECCCcch
Confidence 45667777777776 689999999999999998898888887431 112346899999999999665
No 332
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.03 E-value=4.5e-06 Score=80.55 Aligned_cols=40 Identities=33% Similarity=0.558 Sum_probs=35.3
Q ss_pred cEEEECCChHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~-----G~~V~liEk~~~~gg~~~ 131 (321)
+|+|||||++||+||+.|++.+ +.+|+|+|+.+.+||.++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 6999999999999999999851 479999999999998753
No 333
>PLN02676 polyamine oxidase
Probab=98.03 E-value=6e-06 Score=80.12 Aligned_cols=45 Identities=38% Similarity=0.547 Sum_probs=38.6
Q ss_pred cccCCcccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 020815 85 MITYADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA 130 (321)
Q Consensus 85 ~~~~~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~ 130 (321)
|.....+||+|||||++||+||++|++. |. +|+|+|++..+||..
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGRM 66 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCcc
Confidence 3333468999999999999999999999 88 699999999888754
No 334
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.02 E-value=0.00012 Score=75.01 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=71.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||||..|+-+|..|.+. |.+ |+|+++..... + + ...
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~---~------------------------~----------~~~ 612 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE---M------------------------P----------ARL 612 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---C------------------------C----------CCH
Confidence 4799999999999999999998 886 99999863200 0 0 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.+ ++.+. +.|+++++.+.+.++..+ ++++.++.+...... .+.++. ..++..++.+|.||+|.|...
T Consensus 613 ~e-----~~~~~-~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p 686 (752)
T PRK12778 613 EE-----VKHAK-EEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686 (752)
T ss_pred HH-----HHHHH-HcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCC
Confidence 11 12233 579999999999898764 467888776421000 000000 112346799999999999554
Q ss_pred C
Q 020815 243 P 243 (321)
Q Consensus 243 ~ 243 (321)
.
T Consensus 687 ~ 687 (752)
T PRK12778 687 N 687 (752)
T ss_pred C
Confidence 3
No 335
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.01 E-value=7.7e-05 Score=69.41 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=67.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+.+|..|.+. |.+ |+|+++..... .+ .
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~---------------------------~~-----------~- 212 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINE---------------------------AP-----------A- 212 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhh---------------------------CC-----------C-
Confidence 4799999999999999999888 886 99999763200 00 0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccC--------CCCCCCceEEEcCeEEEcCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--------TQSCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~--------~~~~g~~~~i~a~~VI~AtG~~ 241 (321)
...+.+++. ..|+++++++.++++..+ +++..+..... .++.. ...+++..++.+|.||+|+|..
T Consensus 213 ---~~~~~~~l~-~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 213 ---GKYEIERLI-ARGVEFLELVTPVRIIGE-GRVEGVELAKM--RLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ---CHHHHHHHH-HcCCEEeeccCceeeecC-CcEeEEEEEEE--EecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 011233343 579999999988887643 45555544221 00000 0011244689999999999965
Q ss_pred CC
Q 020815 242 GP 243 (321)
Q Consensus 242 ~~ 243 (321)
..
T Consensus 286 p~ 287 (352)
T PRK12770 286 PT 287 (352)
T ss_pred CC
Confidence 43
No 336
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.01 E-value=5.7e-05 Score=70.89 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=101.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
.--|++||+|..|+.+|..|... +++|++|++.+.+- .. ...
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~-----------------------~~--------------lf~ 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL-----------------------PR--------------LFG 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch-----------------------hh--------------hhh
Confidence 45799999999999999999998 99999999975210 00 001
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchh
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 248 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~ 248 (321)
..+.+.+.+.+ +++|++++.++.+..+... ++++.-|.+.+ ..++.||.||+.+|......
T Consensus 255 ~~i~~~~~~y~-e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------------g~~l~adlvv~GiG~~p~t~--- 316 (478)
T KOG1336|consen 255 PSIGQFYEDYY-ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------------GKTLEADLVVVGIGIKPNTS--- 316 (478)
T ss_pred HHHHHHHHHHH-HhcCeEEEEecceeecccCCCCcEEEEEecc--------------CCEeccCeEEEeeccccccc---
Confidence 22333333334 3789999999999999865 47888888754 37899999999999655422
Q ss_pred hhhhhhcCCcccccCCceeecccccchhhcccccccccccccccchhhcC-CC--CCCCcceeeeeeecch
Q 020815 249 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID-GA--PRMGPTFGAMMISGQK 316 (321)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~~~-g~--~~~~~~~~~~~~~~~~ 316 (321)
.+.. +. .+...+++.++. +-+.-+|+.|+.|+.+...- ++ -+-.+++.-.-.+|++
T Consensus 317 --~~~~-g~--~~~~~G~i~V~~-------~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~ 375 (478)
T KOG1336|consen 317 --FLEK-GI--LLDSKGGIKVDE-------FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ 375 (478)
T ss_pred --cccc-cc--eecccCCEeehh-------ceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence 1110 11 122223333332 22334899999999874432 22 2224555555555543
No 337
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=5.6e-06 Score=78.55 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
.|+|+|||.|||+||++|++. |++|+|+|+++.+||.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCcee
Confidence 599999999999999999999 99999999999999875
No 338
>PLN02568 polyamine oxidase
Probab=97.97 E-value=9.3e-06 Score=79.63 Aligned_cols=40 Identities=30% Similarity=0.579 Sum_probs=36.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC-----CeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~liEk~~~~gg~~ 130 (321)
..||+|||||++||+||+.|++. | .+|+|+|++..+||.+
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCeE
Confidence 47999999999999999999987 6 8999999999888764
No 339
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.95 E-value=9.6e-05 Score=70.15 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|||||+|.|..-+..|..|++. |++|+-+|+++..||.+
T Consensus 4 ~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGGG
T ss_pred cceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCch
Confidence 79999999999999999999999 99999999999888654
No 340
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.94 E-value=0.00026 Score=68.49 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=70.6
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+.+|..+.+. |. +|+||++.....- +. ..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~~~~---------------------------~~----------~~ 324 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDEANM---------------------------PG----------SR 324 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCcccC---------------------------CC----------CH
Confidence 4899999999999999999888 75 7999998642100 00 00
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~ 242 (321)
. .++.+. +.|+++++++.+.++..+ ++++.++++...... .+.++. ..++..++.+|.||+|+|...
T Consensus 325 ~-----e~~~~~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 325 R-----EVANAR-EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred H-----HHHHHH-hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 1 122333 579999999999998764 567877765321000 000000 113456899999999999554
Q ss_pred C
Q 020815 243 P 243 (321)
Q Consensus 243 ~ 243 (321)
.
T Consensus 399 ~ 399 (467)
T TIGR01318 399 H 399 (467)
T ss_pred C
Confidence 3
No 341
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.94 E-value=4.1e-05 Score=78.56 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=65.1
Q ss_pred EEEECCChHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 93 VVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~--~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
|||||+|++|+.+|.+|.+. .+.+|+|||+.+.++-. .-. ... ++. |. . ...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~---r~~-L~~---------~l~--g~-~----------~~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN---RIL-LSS---------VLQ--GE-A----------DLD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc---ccc-ccH---------HHC--CC-C----------CHH
Confidence 68999999999999988763 26799999998754311 000 000 000 00 0 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
++.....+.+. +.|++++.+++|+.+..++.. |.+. ++.++.+|++|+|||...
T Consensus 55 ~l~~~~~~~~~-~~gv~~~~g~~V~~Id~~~k~---V~~~--------------~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 55 DITLNSKDWYE-KHGITLYTGETVIQIDTDQKQ---VITD--------------AGRTLSYDKLILATGSYP 108 (785)
T ss_pred HccCCCHHHHH-HCCCEEEcCCeEEEEECCCCE---EEEC--------------CCcEeeCCEEEECCCCCc
Confidence 11111112222 579999999999998766543 2332 125799999999999764
No 342
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00017 Score=73.68 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=36.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~ 129 (321)
-..|.|||.||+||+||-+|-+. |..|+|+||.+.+||-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence 46899999999999999999999 9999999999998864
No 343
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.93 E-value=4.4e-05 Score=78.67 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=65.3
Q ss_pred cEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 92 DVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
+|||||+|++|+.+|..|.+. ++.+|+||++.+.+. +....+ .. ++.. . .
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~---Y~r~~L-~~---------~~~~--~------------~ 57 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA---YDRVHL-SS---------YFSH--H------------T 57 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc---ccCCcc-hH---------hHcC--C------------C
Confidence 799999999999999999753 258999999986542 100000 00 0000 0 0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..++.....+.+ ++.|++++.++.|+.+..+... |.+. ++.++.+|++|+|||...
T Consensus 58 ~~~l~~~~~~~~-~~~gI~~~~g~~V~~Id~~~~~---V~~~--------------~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 58 AEELSLVREGFY-EKHGIKVLVGERAITINRQEKV---IHSS--------------AGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHccCCCHHHH-HhCCCEEEcCCEEEEEeCCCcE---EEEC--------------CCcEEECCEEEECCCCCc
Confidence 011111111222 2579999999999888655432 2232 125799999999999764
No 344
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.91 E-value=0.00018 Score=71.18 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||||..|+..|..|++. |.+|+|+++.+... . . .
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~~-----------------------------~----------~-~ 182 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDFT-----------------------------C----------A-K 182 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCccc-----------------------------c----------C-H
Confidence 4899999999999999999999 99999999874210 0 0 1
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEE--EcCe----EEEcCCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM--EAKV----VVSSCGHDGP 243 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~a~~----VI~AtG~~~~ 243 (321)
.+.++++++.|++++.++.++++.. ++.+..+.... . .+|+..++ .+|. ||+|+|....
T Consensus 183 ----~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~------~---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn 247 (555)
T TIGR03143 183 ----LIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVN------N---VTGEITEYKAPKDAGTFGVFVFVGYAPS 247 (555)
T ss_pred ----HHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEE------C---CCCCEEEEeccccccceEEEEEeCCCCC
Confidence 1122333357999999999999864 34444443321 0 11222333 3666 9999995543
No 345
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.90 E-value=0.00074 Score=64.29 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=35.1
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~~ 130 (321)
.++=|||+|+|+|++|.+|-+. ||.+|.|+|+...+||+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 4688999999999999999873 588999999998888764
No 346
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.89 E-value=0.00014 Score=68.40 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
+...+...|.+.+. + |++++++++|.++..+++. ..|++.. +..++|+.||+|+|.++.
T Consensus 133 dp~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~-~~v~t~~--------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 133 SPPQLCRALLAHAG-I-RLTLHFNTEITSLERDGEG-WQLLDAN--------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred ChHHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCe-EEEEeCC--------------CCEEEcCEEEEcCCcccc
Confidence 44677778777775 5 9999999999999877665 3454422 245899999999997764
No 347
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.88 E-value=1.3e-05 Score=76.67 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=54.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
..|.|||+||+|+++|..|++. |+.|+++|+.+.+||-.. +|++-.. -..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGll~---------------------yGIP~~k--------l~k 173 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGLLL---------------------YGIPDFK--------LPK 173 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCceeEE---------------------ecCchhh--------ccc
Confidence 6899999999999999999999 999999999988887422 2222111 113
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEE
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAE 195 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~ 195 (321)
++.+..++.+. +.|++|+.++++-
T Consensus 174 ~i~d~~i~~l~-~~Gv~~~~~~~vG 197 (457)
T COG0493 174 DILDRRLELLE-RSGVEFKLNVRVG 197 (457)
T ss_pred hHHHHHHHHHH-HcCeEEEEcceEC
Confidence 45555566665 5679999887663
No 348
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.87 E-value=7.8e-05 Score=69.88 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=69.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
..|||||||.+|+.+|..|.+.+ +.+|+|||+++.. .+..+ |-+.-. +. .+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------l~~pl---------L~eva~-----g~----l~~ 56 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------LFTPL---------LYEVAT-----GT----LSE 56 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc---------ccchh---------hhhhhc-----CC----CCh
Confidence 47999999999999999999972 4899999998631 11111 111000 00 011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~ 243 (321)
......+.+-+....+++++.+ +|++|..++.+|. +. +...+..|++|+|.|+...
T Consensus 57 ~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~--------------~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 57 SEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVT---LA--------------DLGEISYDYLVVALGSETN 112 (405)
T ss_pred hheeccHHHHhcccCceEEEEE-EEEEEcccCCEEE---eC--------------CCccccccEEEEecCCcCC
Confidence 2222233333332446999888 8999988887654 22 1267899999999997553
No 349
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00021 Score=65.00 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=89.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-||+|||||-+.+-.|+.|++. +.+|.|+-|++....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccCc------------------------------------------
Confidence 4999999999999999999998 899999998753210
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
...+.+++.+..++++++++.+.++.-++ +.+|+..+. . ++...+..+.|.++.|...+..
T Consensus 181 --~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p~~~----- 241 (305)
T COG0492 181 --EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLPNTE----- 241 (305)
T ss_pred --CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCCchH-----
Confidence 12445555545589999999999987655 667776531 0 2446899999999999554321
Q ss_pred hhhhcCCcccccCCceeecccccchhhc-ccccccccccccccchh
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIVR-LTREVVPGMIVTGMEVA 295 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~g~~~~ 295 (321)
.+.+.+. .+..+..++. ..+..+||+|++|+.+.
T Consensus 242 ~~~~~~~-----------~~~~g~I~v~~~~~TsvpGifAaGDv~~ 276 (305)
T COG0492 242 LLKGLGV-----------LDENGYIVVDEEMETSVPGIFAAGDVAD 276 (305)
T ss_pred HHhhccc-----------cCCCCcEEcCCCcccCCCCEEEeEeecc
Confidence 1121111 1111111221 25567999999998874
No 350
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.86 E-value=0.00033 Score=73.08 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=69.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-+|+|||||..|+-+|..+.+. |.+|+++.+.... .| + ....
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~~---~m--------------------------------p--a~~~ 489 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTKS---EM--------------------------------P--ARVE 489 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCcc---cc--------------------------------c--ccHH
Confidence 4799999999999999999999 9999999876310 00 0 0011
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEEC--CEEEEEEEeecce-ecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
. ++.+. +.|+++++.+.++++..++ +++.++.+..... ..+.++ ...++..++.||.||+|.|-..
T Consensus 490 e-----~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p 562 (944)
T PRK12779 490 E-----LHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTA 562 (944)
T ss_pred H-----HHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCC
Confidence 1 11222 4699999999999987653 3677765531000 000000 0123456899999999999553
No 351
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.82 E-value=0.00016 Score=67.55 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=60.9
Q ss_pred ccEEEECCChHHHHHHHHhhc----CCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815 91 TDVVVVGAGSAGLSCAYELSK----NPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV 164 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~----~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 164 (321)
-.|+|||+|.+|+.+|..|++ . | .+|+|+.. +.+.. .
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~~-~~~l~-----------------------~------------ 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIAG-ASLLP-----------------------G------------ 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEeC-Ccccc-----------------------c------------
Confidence 489999999999999999975 3 3 47888832 11100 0
Q ss_pred EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
....+...+.+.+. +.|++++.++.+.++. ++ .+.+. ++.++.+|.||+|+|...
T Consensus 189 ---~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 189 ---FPAKVRRLVLRLLA-RRGIEVHEGAPVTRGP--DG---ALILA--------------DGRTLPADAILWATGARA 243 (364)
T ss_pred ---CCHHHHHHHHHHHH-HCCCEEEeCCeeEEEc--CC---eEEeC--------------CCCEEecCEEEEccCCCh
Confidence 00123334444444 6899999999988773 33 23332 226799999999999554
No 352
>PLN02529 lysine-specific histone demethylase 1
Probab=97.81 E-value=2.4e-05 Score=78.86 Aligned_cols=40 Identities=35% Similarity=0.636 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..||+|||||++|++||..|++. |++|+|+|+...+||..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCce
Confidence 57999999999999999999999 99999999988877654
No 353
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.77 E-value=2.2e-05 Score=74.57 Aligned_cols=144 Identities=27% Similarity=0.337 Sum_probs=84.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC--------CCcc-----------------------ccCcccch
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--------GGGA-----------------------WLGGQLFS 138 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~--------gg~~-----------------------~~~g~~~~ 138 (321)
.||.+|||+|.+|+.+|+.|++. |.+++++-+-... ||.. |.+.+...
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhc-CceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 48999999999999999999999 9999999875321 1111 11111111
Q ss_pred hhhcc--chHHHHHHHcCCCcccCCCe---------------------EE----EecHHHHHHHHHHHHHcCCCcEEEcC
Q 020815 139 AMVVR--KPAHIFLDELGIDYDEQDNY---------------------VV----IKHAALFTSTIMSKLLARPNVKLFNA 191 (321)
Q Consensus 139 ~~~~~--~~~~~~l~~~g~~~~~~~~~---------------------~~----~~~~~~~~~~l~~~~~~~~gv~i~~~ 191 (321)
..+.. +.....|+.+|.+|....+. .. ..-...+...|+.+.++. +..++..
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 11111 12345667788877543110 00 011244556666666643 4444444
Q ss_pred ceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 192 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 192 ~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
.-..+++...+.+.++..... .+++...++++.+|+|+|++|..
T Consensus 213 yfa~dll~~~g~~~~~va~~~---------~d~~i~~~r~~~ti~a~gg~G~~ 256 (642)
T KOG2403|consen 213 YFALDLLMSQGECVGVIALNL---------EDGTIHRFRAKNTILATGGYGRA 256 (642)
T ss_pred HHHHHHHHhccCceEEEEEEe---------ecccceeeeeeeeEEEEeccceE
Confidence 444455554455555554321 23456889999999999998854
No 354
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.75 E-value=3.6e-05 Score=78.16 Aligned_cols=40 Identities=40% Similarity=0.650 Sum_probs=36.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..+|+|||||++|+++|+.|++. |.+|+|+|+...+||..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCcc
Confidence 47999999999999999999999 99999999998887653
No 355
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.65 E-value=6.6e-05 Score=73.89 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=87.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
..+|||||.-|+.+|..|... |.+|.|++=.+.. . .+.|+ .+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~~~l----------M---------erQLD---------------~~--- 188 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDL-GMEVTVVHIAPTL----------M---------ERQLD---------------RT--- 188 (793)
T ss_pred CcEEEccchhhhHHHHHHHhC-CCceEEEeecchH----------H---------HHhhh---------------hH---
Confidence 469999999999999999999 9999999865410 0 00111 01
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR 251 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~ 251 (321)
...++++..++.|++++.+...+++.. ++++.++...+ +..+.|+.||.|+|-..... .
T Consensus 189 -ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~D--------------G~~i~ad~VV~a~GIrPn~e-----l 247 (793)
T COG1251 189 -AGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFAD--------------GTEIPADLVVMAVGIRPNDE-----L 247 (793)
T ss_pred -HHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecC--------------CCcccceeEEEecccccccH-----h
Confidence 123344444578999999877776655 67788888754 37899999999999433221 1
Q ss_pred hhhcCCcccccCCceeecccccchhhcccccccccccccccchhh
Q 020815 252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296 (321)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~g~~~~~ 296 (321)
.. ..++.+++ ...+..+.+...|.+|+.|.++..
T Consensus 248 a~----------~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~ 281 (793)
T COG1251 248 AK----------EAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEH 281 (793)
T ss_pred HH----------hcCcCcCC-CeeecccccccCCCeeehhhHHHh
Confidence 11 22223333 222234456778888888877643
No 356
>PRK13984 putative oxidoreductase; Provisional
Probab=97.65 E-value=0.00088 Score=66.96 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=67.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC------eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeE
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI------QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV 164 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~------~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 164 (321)
-.|+|||||..|+-+|..|++. +. +|.++....... .+ +
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~-~~~~~g~~~V~v~~~~r~~~--~~------------------------~-------- 463 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARL-QKMEYGEVNVKVTSLERTFE--EM------------------------P-------- 463 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhc-cccccCceEEEEeccccCcc--cC------------------------C--------
Confidence 4899999999999999999876 43 566653210000 00 0
Q ss_pred EEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCC-----CCCCceEEEcCeEEEcCC
Q 020815 165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~a~~VI~AtG 239 (321)
.....+ .++. +.|+++++++.+.++..+++++.++.........+.++. ..++..++.+|.||+|.|
T Consensus 464 --~~~~e~-----~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG 535 (604)
T PRK13984 464 --ADMEEI-----EEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535 (604)
T ss_pred --CCHHHH-----HHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC
Confidence 000111 1222 469999999888888777788888876431111111110 012346899999999999
Q ss_pred CCCC
Q 020815 240 HDGP 243 (321)
Q Consensus 240 ~~~~ 243 (321)
....
T Consensus 536 ~~p~ 539 (604)
T PRK13984 536 QAPD 539 (604)
T ss_pred CCCC
Confidence 5543
No 357
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.63 E-value=0.00047 Score=72.63 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=67.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+..|..|++. |. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcch-------------------------------------------
Confidence 4899999999999999999998 84 68899876321
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
...+.+++. +.||+++.++.++++.. ++++.+|.... .+++..++.||.|+++.|-..
T Consensus 354 ---~~~l~~~L~-~~GV~i~~~~~v~~i~g-~~~v~~V~l~~----------~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 354 ---SPEARAEAR-ELGIEVLTGHVVAATEG-GKRVSGVAVAR----------NGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred ---hHHHHHHHH-HcCCEEEcCCeEEEEec-CCcEEEEEEEe----------cCCceEEEECCEEEEcCCcCc
Confidence 001234444 67999999999988864 44566666531 012347899999999999444
No 358
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.60 E-value=0.0016 Score=65.51 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=69.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||+|..|+-+|..+.+. | .+|+++++..... +. ...
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~---~~----------------------------------~~~ 493 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRL-NAASVTCAYRRDEVS---MP----------------------------------GSR 493 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence 4899999999999999888887 7 4799998763210 00 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeeccee-cccCCC-----CCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS-MNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~-~~~~~~-----~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.++ ..+. +.|+++++.+.++++..+ ++++.++.+...... .+.++. ..++..++.+|.||+|.|...
T Consensus 494 ~e~-----~~a~-~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 494 KEV-----VNAR-EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHH-----HHHH-HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 111 1222 579999999999998764 577887765321000 000000 123456899999999999544
No 359
>PLN03000 amine oxidase
Probab=97.56 E-value=9.1e-05 Score=75.47 Aligned_cols=41 Identities=34% Similarity=0.684 Sum_probs=38.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
..||+|||||++|+.+|+.|.+. |++|+|+|++..+||.++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCCcc
Confidence 58999999999999999999999 999999999999988664
No 360
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.56 E-value=0.00076 Score=62.36 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=78.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhcc------------c----hHHHHHHHc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR------------K----PAHIFLDEL 153 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~------------~----~~~~~l~~~ 153 (321)
.+|+|.||-||.-|+.|+.|.+..+.+++.+||.+.. .|..|.+....... + .-+.+|.+.
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F---~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF---SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC---CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 5899999999999999999999646899999998654 26655543221111 0 123444444
Q ss_pred CCCcccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEEC-CEEEE--EEEeecceecccCCCCCCCceEEE
Q 020815 154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGG--VVTNWALVSMNHDTQSCMDPNVME 230 (321)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~ 230 (321)
+--+.-..--.......+|.+++. .+.... -.++++++|++|..-+ +.... +.+. +..+++
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~-Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~--------------~~~~y~ 145 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQ-WAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTA--------------NGTVYR 145 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHH-HHHhhC-CccccCCeeccccccCCcceeEEEEEcC--------------CCcEEE
Confidence 421111100011123345555543 333233 6788899999773322 22222 2322 225899
Q ss_pred cCeEEEcCCCCC
Q 020815 231 AKVVVSSCGHDG 242 (321)
Q Consensus 231 a~~VI~AtG~~~ 242 (321)
|+.+|+.+|...
T Consensus 146 ar~lVlg~G~~P 157 (436)
T COG3486 146 ARNLVLGVGTQP 157 (436)
T ss_pred eeeEEEccCCCc
Confidence 999999999654
No 361
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.52 E-value=0.00017 Score=67.88 Aligned_cols=30 Identities=37% Similarity=0.563 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 100 ~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
++||+||++|++. |.+|+|+|+++.+||.+
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCcce
Confidence 5899999999999 99999999999999876
No 362
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00042 Score=62.25 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=63.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccc--------h----HHHHHHHcCCCc-
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK--------P----AHIFLDELGIDY- 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~--------~----~~~~l~~~g~~~- 157 (321)
..|-|||||.||..+|+++++. |++|.|.|-++.-+-.....+. +..+++.. . ....++.+|--.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~-fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii 81 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDN-FAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII 81 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccc-hhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence 4689999999999999999999 9999999976543322111111 11111110 0 112333333211
Q ss_pred --cc---C-CCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEE
Q 020815 158 --DE---Q-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (321)
Q Consensus 158 --~~---~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l 197 (321)
.+ . .+..+..+...|.+.+-+++.+++.|+++.+ +|++|
T Consensus 82 ~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 82 EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred hhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 00 0 1223344567788888899988899999877 56555
No 363
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.49 E-value=0.00014 Score=68.36 Aligned_cols=41 Identities=39% Similarity=0.589 Sum_probs=36.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
...|||||||.|||+||.+|-+.+..+|+|+|..+.+||..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 45899999999999999999976478999999999998754
No 364
>PLN02976 amine oxidase
Probab=97.46 E-value=0.00015 Score=76.83 Aligned_cols=42 Identities=31% Similarity=0.632 Sum_probs=37.9
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~ 131 (321)
..+||+|||||++|+.+|+.|.+. |++|+|||+...+||..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCcee
Confidence 358999999999999999999999 999999999988887643
No 365
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.39 E-value=0.00016 Score=66.96 Aligned_cols=41 Identities=39% Similarity=0.633 Sum_probs=34.6
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~ 130 (321)
..+|+|||||++||++||+|++. |...++|+|+.+..||..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 46999999999999999999996 234567799999998843
No 366
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.37 E-value=0.004 Score=60.59 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.|+|||||..|+-+|..+.+..+.+|.++|..+....... ....+ ..+. ...
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~-------------------~~~~~-----~~~~---~~~ 336 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARA-------------------KDNPW-----PEWP---RVY 336 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcc-------------------cccCC-----Cccc---hhh
Confidence 47999999999999988877762457999998643210000 00000 0000 000
Q ss_pred HHHHHHHHHHHcCCCcEE-EcCceEEEEEEEC-CEEEEEEEeecceecccCCC-----CCCCceEEEcCeEEEcCCCC
Q 020815 171 LFTSTIMSKLLARPNVKL-FNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCGHD 241 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i-~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~a~~VI~AtG~~ 241 (321)
+. ....++..+..|+++ ++.+.+.++..++ +++.++.+.......+.++. ..++..++.+|.||+|.|..
T Consensus 337 e~-~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 337 RV-DYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred hh-HHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC
Confidence 11 112233322356654 4566777876553 68888765321000011110 12344689999999999954
No 367
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.34 E-value=0.0016 Score=60.30 Aligned_cols=134 Identities=17% Similarity=0.233 Sum_probs=65.6
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCC--ccccCcccchhh-----hccc-hH-HHHHHHcC-CCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG--GAWLGGQLFSAM-----VVRK-PA-HIFLDELG-IDYD 158 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg--~~~~~g~~~~~~-----~~~~-~~-~~~l~~~g-~~~~ 158 (321)
...|+|||||.++..++..|.+. +..+|.++-|+...-- .+-....++..- ...+ .. .+.+.+.. ..
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n-- 267 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN-- 267 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT--
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc--
Confidence 57999999999999999999986 1358999998753210 000000011110 0000 01 12222221 11
Q ss_pred cCCCeEEEec--HHHHHHHHHH-HHHcCCCcEEEcCceEEEEEEEC-CEEEEEEEeecceecccCCCCCCCceEEEcCeE
Q 020815 159 EQDNYVVIKH--AALFTSTIMS-KLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (321)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~l~~-~~~~~~gv~i~~~~~v~~l~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~V 234 (321)
+..+.. -..+.+.+++ ++.....++++.+++|+++..++ +++. +.+.. . ..++..++.+|.|
T Consensus 268 ----y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~------~---~~~~~~~~~~D~V 333 (341)
T PF13434_consen 268 ----YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRH------R---QTGEEETLEVDAV 333 (341)
T ss_dssp ----SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEE------T---TT--EEEEEESEE
T ss_pred ----CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEE------C---CCCCeEEEecCEE
Confidence 111111 1222233333 33334568999999999999887 3433 22221 1 1224578999999
Q ss_pred EEcCC
Q 020815 235 VSSCG 239 (321)
Q Consensus 235 I~AtG 239 (321)
|+|||
T Consensus 334 ilATG 338 (341)
T PF13434_consen 334 ILATG 338 (341)
T ss_dssp EE---
T ss_pred EEcCC
Confidence 99999
No 368
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.33 E-value=0.002 Score=67.11 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=63.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
-.|+|||||..|+-+|..+.+.+| .+|.|+.++.... + + ...
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~---M------------------------P----------A~~ 711 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE---M------------------------P----------AWR 711 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc---c------------------------c----------ccH
Confidence 489999999999999998887635 4899999864200 0 0 001
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT----QSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~----~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.. ++.+. +.|++++..+.+.++.. ++++.......+. .+..+ ...++..++.+|.||+|+|...
T Consensus 712 eE-----le~Al-eeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~--~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~P 779 (1019)
T PRK09853 712 EE-----YEEAL-EDGVEFKELLNPESFDA-DGTLTCRVMKLGE--PDESGRRRPVETGETVTLEADTVITAIGEQV 779 (1019)
T ss_pred HH-----HHHHH-HcCCEEEeCCceEEEEc-CCcEEEEEEEeec--ccCCCceEEeeCCCeEEEEeCEEEECCCCcC
Confidence 11 12222 35899999888888753 4443322111000 00000 0112457899999999999554
No 369
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.30 E-value=0.01 Score=57.63 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=38.8
Q ss_pred CCcEEEcCceEEEEEEE---CCEEEEEEEeecceeccc-CC----CCCCCceEEEcCeEEEcCCCCC
Q 020815 184 PNVKLFNAVAAEDLIVK---GGRVGGVVTNWALVSMNH-DT----QSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 184 ~gv~i~~~~~v~~l~~~---~~~v~gv~~~~~~~~~~~-~~----~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
.++.+++...-++|+.+ +++|.++++.......+. .+ ..+++..++.+|.||.|.|..+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 47889988888888742 268999888642211110 00 1134567899999999999654
No 370
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.28 E-value=0.0076 Score=63.03 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=63.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
.-.|+|||||..|+-+|..+.+.+|. +|.||++..... . + ..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~---M------------------------p----------a~ 708 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY---M------------------------P----------AS 708 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc---c------------------------c----------cC
Confidence 34899999999999999988874364 899999864200 0 0 00
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCC----CCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT----QSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~----~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
... ++.+. +.|++++..+.+.++. ++++.......+ ..+.++ ..+++..++.+|.||+|.|...
T Consensus 709 ~eE-----l~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~--~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~P 776 (1012)
T TIGR03315 709 REE-----LEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLG--EPDASGRRRPVGTGETVDLPADTVIAAVGEQV 776 (1012)
T ss_pred HHH-----HHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEee--cccCCCceeeecCCCeEEEEeCEEEEecCCcC
Confidence 011 12222 3689999888877775 454433221100 000000 0123456899999999999553
No 371
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0014 Score=58.17 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHhhcC------CCCeEEEEeccCCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN------PNIQIAIIEQSVSP 126 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~------~G~~V~liEk~~~~ 126 (321)
.+|+|||+|..||++|+.+.+. |-.+|.+++-...+
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 5899999999999999776652 35788988765544
No 372
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0047 Score=57.06 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=36.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|||+|+|-|..=+..+..|+.. |.+|+.+||++..||..
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCccc
Confidence 59999999999999999999999 99999999999887653
No 373
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.51 E-value=0.01 Score=51.88 Aligned_cols=32 Identities=44% Similarity=0.783 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHhhc-CCCCeEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~ 124 (321)
.+|||||+||.+||-+|+. .|...++||...+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 6899999999999999998 3578999998865
No 374
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.49 E-value=0.027 Score=52.66 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=62.5
Q ss_pred ccEEEECCChHHHHHHHHhhcC---------C----CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN---------P----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY 157 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---------~----G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~ 157 (321)
..+|||||||.|...|.+|+.. | .++|++||..+.+ ..+++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------------L~mFd------ 272 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------------LNMFD------ 272 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------HHHHH------
Confidence 5899999999999999998741 1 4678888876421 00111
Q ss_pred ccCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEc
Q 020815 158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (321)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~A 237 (321)
..+.....++. ++.++++..++.|.++. +..+ -+.+ .+|+..+|..-.+|.|
T Consensus 273 ------------krl~~yae~~f-~~~~I~~~~~t~Vk~V~--~~~I-~~~~------------~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 273 ------------KRLVEYAENQF-VRDGIDLDTGTMVKKVT--EKTI-HAKT------------KDGEIEEIPYGLLVWA 324 (491)
T ss_pred ------------HHHHHHHHHHh-hhccceeecccEEEeec--CcEE-EEEc------------CCCceeeecceEEEec
Confidence 22333333333 47899999999888773 2221 1222 1235577888899999
Q ss_pred CCCCC
Q 020815 238 CGHDG 242 (321)
Q Consensus 238 tG~~~ 242 (321)
||-..
T Consensus 325 tG~~~ 329 (491)
T KOG2495|consen 325 TGNGP 329 (491)
T ss_pred CCCCC
Confidence 99544
No 375
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.44 E-value=0.017 Score=53.72 Aligned_cols=98 Identities=13% Similarity=0.235 Sum_probs=62.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCC---CCeEE-EEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEE
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNP---NIQIA-IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI 166 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~-liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 166 (321)
-.|-|||.|..|...|+.|.++. |.+|. |+|.... +.+.
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------------------m~ki----------------- 390 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------------------MEKI----------------- 390 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------------------hhhh-----------------
Confidence 47899999999999999998741 33332 2222100 0000
Q ss_pred ecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
-...+.++-+++++ +.|++++.+..|..+....+.+. ++.+ ++.+++.|.||+|+|-..
T Consensus 391 -LPeyls~wt~ekir-~~GV~V~pna~v~sv~~~~~nl~-lkL~--------------dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 391 -LPEYLSQWTIEKIR-KGGVDVRPNAKVESVRKCCKNLV-LKLS--------------DGSELRTDLVVVAVGEEP 449 (659)
T ss_pred -hHHHHHHHHHHHHH-hcCceeccchhhhhhhhhccceE-EEec--------------CCCeeeeeeEEEEecCCC
Confidence 01234455567776 68999999988887765443322 2222 347899999999999654
No 376
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.36 E-value=0.0064 Score=58.70 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|||+|.+|+-.|..|++. +.+|.|+.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 35799999999999999999998 89999999864
No 377
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.015 Score=53.33 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=37.4
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
..|||+|+|.|+.-+..+..|+.. |.+|+.||+++..|+..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCccc
Confidence 369999999999999999999999 99999999999887654
No 378
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.98 E-value=0.022 Score=53.92 Aligned_cols=102 Identities=13% Similarity=0.241 Sum_probs=62.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccC--CCeEE
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--DNYVV 165 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~ 165 (321)
...++|||+|++|..|+..+.+. | -+.+|+-+... +++++. .....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~-g~~~ri~l~~~~~~-----------------------------~pydr~~Ls~~~~ 123 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQV-GFTERIALVKREYL-----------------------------LPYDRARLSKFLL 123 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhh-CCCcceEEEecccc-----------------------------Ccccchhccccee
Confidence 45899999999999999999886 3 35555544321 111110 00000
Q ss_pred EecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCC
Q 020815 166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~ 240 (321)
.. ...+.....+.. ++.++++++++.|+.+...+..+ .+. +++++..+.+|+|||.
T Consensus 124 ~~-~~~~a~r~~e~Y-ke~gIe~~~~t~v~~~D~~~K~l---~~~--------------~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 124 TV-GEGLAKRTPEFY-KEKGIELILGTSVVKADLASKTL---VLG--------------NGETLKYSKLIIATGS 179 (478)
T ss_pred ec-cccccccChhhH-hhcCceEEEcceeEEeeccccEE---EeC--------------CCceeecceEEEeecC
Confidence 00 011111111112 36799999999999998877643 232 3488999999999997
No 379
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.67 E-value=0.042 Score=50.17 Aligned_cols=141 Identities=15% Similarity=0.212 Sum_probs=85.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHH
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 170 (321)
-.++|||||..++..|--++-. |-++-|+=|...+ |+. |+ .
T Consensus 190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kv-----------------------LR~----FD-----------~ 230 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKV-----------------------LRG----FD-----------E 230 (478)
T ss_pred ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchh-----------------------hcc----hh-----------H
Confidence 3789999998888888777777 7787777665421 100 00 2
Q ss_pred HHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhh
Q 020815 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK 250 (321)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~ 250 (321)
.+...+.+++. ..|++++.++.+++++..++....+.+.. ......|.++.|+|.....-
T Consensus 231 ~i~~~v~~~~~-~~ginvh~~s~~~~v~K~~~g~~~~i~~~--------------~~i~~vd~llwAiGR~Pntk----- 290 (478)
T KOG0405|consen 231 MISDLVTEHLE-GRGINVHKNSSVTKVIKTDDGLELVITSH--------------GTIEDVDTLLWAIGRKPNTK----- 290 (478)
T ss_pred HHHHHHHHHhh-hcceeecccccceeeeecCCCceEEEEec--------------cccccccEEEEEecCCCCcc-----
Confidence 23344445554 78999999999999988655333333321 13344899999999432211
Q ss_pred hhhhcCCcccccCCceeecccccchhh-cccccccccccccccchhhcC
Q 020815 251 RLKSIGMIEEVPGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEVAEID 298 (321)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~~~g~~~~~~~ 298 (321)
+++ -...+..++.....++ .+.+..+|+++..|+.+..+.
T Consensus 291 ---~L~-----le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~ 331 (478)
T KOG0405|consen 291 ---GLN-----LENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN 331 (478)
T ss_pred ---ccc-----chhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe
Confidence 111 1122333333332223 467788999999998876654
No 380
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.41 E-value=0.074 Score=48.06 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcC-CCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~ 124 (321)
++.|+|||||.+|+..|..+.++ +.-+|.|||...
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 78999999999999999999874 345899999754
No 381
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.10 E-value=0.32 Score=45.43 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=71.2
Q ss_pred EEEECCChHHHHHHHHhhcC-CC--CeEEEEeccCCC--CCccccCcccchhh-----h-ccchH-HHHHHHcCCCcccC
Q 020815 93 VVVVGAGSAGLSCAYELSKN-PN--IQIAIIEQSVSP--GGGAWLGGQLFSAM-----V-VRKPA-HIFLDELGIDYDEQ 160 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~-~G--~~V~liEk~~~~--gg~~~~~g~~~~~~-----~-~~~~~-~~~l~~~g~~~~~~ 160 (321)
|.|||+|-++..+-+.|-.. +. .++..|-|+... -..+-.+-..+... . ...+. .+.+.+.+..++..
T Consensus 190 V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI 269 (436)
T COG3486 190 VTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGI 269 (436)
T ss_pred EEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccccc
Confidence 99999999999998887652 12 235556665421 01000000011000 0 00111 12233333222211
Q ss_pred CCeEEEecHHHHHHHHHHHHHc--CCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 161 DNYVVIKHAALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
. ..--.++...|+++-.. ++++.++..+++..++..++.-.-+.+.. . ..++..+++.|.||+||
T Consensus 270 ~----~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~------~---~~~~~~t~~~D~vIlAT 336 (436)
T COG3486 270 S----FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH------H---ETGELETVETDAVILAT 336 (436)
T ss_pred C----HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee------c---cCCCceEEEeeEEEEec
Confidence 0 01123444555555332 46799999999999987654212222211 1 22356889999999999
Q ss_pred CCCCC
Q 020815 239 GHDGP 243 (321)
Q Consensus 239 G~~~~ 243 (321)
|-.-.
T Consensus 337 GY~~~ 341 (436)
T COG3486 337 GYRRA 341 (436)
T ss_pred ccccC
Confidence 96643
No 382
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.76 E-value=0.037 Score=45.24 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.2
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
|.|||||..|.++|..|+++ |.+|.|+.+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999999 99999999864
No 383
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.65 E-value=0.046 Score=45.80 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
|.|||+|..|...|..++.. |++|.++|.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 78999999999999999999 99999999874
No 384
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.52 E-value=0.053 Score=43.69 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
|+|+|+|..|+..|+.|++. |.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999874
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.50 E-value=0.046 Score=53.06 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
-.|+|||+|.+|+++|..|.+. |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3799999999999999999999 99999999754
No 386
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.35 E-value=0.063 Score=45.33 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=28.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|||+|.++.-+|+.|++. |.+|.++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 46899999999999999999999 89999998875
No 387
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.25 E-value=0.053 Score=52.31 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~ 125 (321)
.|+|||.|++|+++|..|.+. |.+|.+.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 489999999999999999999 999999998654
No 388
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=0.051 Score=50.54 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=37.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~ 130 (321)
+|||||||.|.--...|.+.++. |.+|+=+|++...||.+
T Consensus 8 ~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~w 47 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGNW 47 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCcc
Confidence 69999999999999999999999 99999999999888764
No 389
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.18 E-value=0.13 Score=47.45 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=33.6
Q ss_pred ccEEEECCChHHHHHHHHhhcC---CCCeEEEEeccCCCCCc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGG 129 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~liEk~~~~gg~ 129 (321)
..+-|||+|.|||++|..|-|. .|.++-|+|.-+..||+
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS 64 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS 64 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence 4688999999999999999874 27899999998877765
No 390
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.062 Score=46.73 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
+++|||+|..|...|..|.+. |..|++||+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 589999999999999999999 99999999865
No 391
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.09 E-value=0.22 Score=49.01 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-+|+|||+|.+|+-.|.+|++. ..+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence 45899999999999999999998 88999888764
No 392
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.86 E-value=0.34 Score=46.23 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=32.0
Q ss_pred cCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEE--cCeEEEcCCCCC
Q 020815 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG 242 (321)
Q Consensus 182 ~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--a~~VI~AtG~~~ 242 (321)
++.|++++.+++|+.+..+++.+. +.. . ++..++. +|+||+|||...
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~---~~~------~-----~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVV---VRN------N-----KTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEE---EEE------C-----CCCCEEecCCCEEEECCCCCC
Confidence 367999998889999876665432 211 0 0124566 999999999754
No 393
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.16 Score=46.35 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=65.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
.-+|||||-.+|.||-.|+-. |+.|++.=|.-...| | .++
T Consensus 200 kTLvVGa~YVaLECAgFL~gf-g~~vtVmVRSI~LrG----------------------------F-----------Dqd 239 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGF-GYDVTVMVRSILLRG----------------------------F-----------DQD 239 (503)
T ss_pred ceEEEccceeeeehhhhHhhc-CCCcEEEEEEeeccc----------------------------c-----------cHH
Confidence 579999999999999999999 999998887632211 1 134
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEE-CCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
+.+.+.+.+. +.|+++...+..+.++.- +++ .-|... +..++ +...-..+.|+.|.|..+
T Consensus 240 mae~v~~~m~-~~Gikf~~~~vp~~Veq~~~g~-l~v~~k------~t~t~---~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 240 MAELVAEHME-ERGIKFLRKTVPERVEQIDDGK-LRVFYK------NTNTG---EEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred HHHHHHHHHH-HhCCceeecccceeeeeccCCc-EEEEee------ccccc---ccccchhhhhhhhhcccc
Confidence 4455555554 679999988877777764 443 222221 11111 223344578999999544
No 394
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.74 E-value=0.41 Score=48.01 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=64.3
Q ss_pred ccEEEECCChHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEec
Q 020815 91 TDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~-G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 168 (321)
-.++|||.|++|..+.-++.+. | -..++++-..+.+.=.. ...+..+... ..
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~R----i~Ls~vl~~~----------------------~~ 57 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNR----ILLSSVLAGE----------------------KT 57 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccc----eeeccccCCC----------------------cc
Confidence 4699999999999999888772 1 46777775543221000 0001011000 01
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCC
Q 020815 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (321)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~ 242 (321)
..++...-.+... ++|++++.+.+|+.|..++..|+ +. .+.++..|.+|+|||.+.
T Consensus 58 ~edi~l~~~dwy~-~~~i~L~~~~~v~~idr~~k~V~---t~--------------~g~~~~YDkLilATGS~p 113 (793)
T COG1251 58 AEDISLNRNDWYE-ENGITLYTGEKVIQIDRANKVVT---TD--------------AGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HHHHhccchhhHH-HcCcEEEcCCeeEEeccCcceEE---cc--------------CCcEeecceeEEecCccc
Confidence 1222212122333 68999999999999977665332 22 237888999999999554
No 395
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.58 E-value=0.28 Score=46.00 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=61.3
Q ss_pred EEEECCChHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecHHH
Q 020815 93 VVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~-~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 171 (321)
++|||+|.+|+.+|..|.+. +..++.++........... .... ++ +.... ....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~---~~~~----------~~---~~~~~---------~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRC---PLSL----------YV---GGGIA---------SLED 55 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCC---ccch----------HH---hcccC---------CHHH
Confidence 58999999999999988772 3677877776643221100 0000 00 00000 0000
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+..... .. ...+++++.++.|+.+..+...+. +. + ..+..|++|+|+|.....
T Consensus 56 ~~~~~~-~~-~~~~i~~~~~~~v~~id~~~~~v~---~~--------------~-g~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 56 LRYPPR-FN-RATGIDVRTGTEVTSIDPENKVVL---LD--------------D-GEIEYDYLVLATGARPRP 108 (415)
T ss_pred hcccch-hH-HhhCCEEeeCCEEEEecCCCCEEE---EC--------------C-CcccccEEEEcCCCcccC
Confidence 000000 11 256899999999999876665432 21 1 278899999999976643
No 396
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.48 E-value=0.084 Score=44.43 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||.|..|+.+|..|++. |++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 489999999999999999999 99999999874
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.44 E-value=0.11 Score=39.22 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 45899999999999999999999 9999999987
No 398
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.35 E-value=1 Score=47.23 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCCcEEEcCceEEEEEEE-CCEEEEEEEeecce----ecc--cC----------CCCCCCceEEEcCeEEEcCCC
Q 020815 183 RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV----SMN--HD----------TQSCMDPNVMEAKVVVSSCGH 240 (321)
Q Consensus 183 ~~gv~i~~~~~v~~l~~~-~~~v~gv~~~~~~~----~~~--~~----------~~~~g~~~~i~a~~VI~AtG~ 240 (321)
+.||++.+.....+++.+ ++++.++++..... ... .. ....+...++.||.||+|.|-
T Consensus 652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 679999999999999876 58999988764210 000 00 001113478999999999994
No 399
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.89 E-value=0.15 Score=43.64 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
-.|+|||||.+|..-+..|.+. |.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4799999999999999999999 9999999875
No 400
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.13 Score=46.89 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
+|.|||+|..|...|..|++. |.+|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 699999999999999999999 99999999874
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.74 E-value=0.14 Score=49.19 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
-.|+|||+|..|+.+|..|++. |++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4799999999999999999999 99999999864
No 402
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.62 E-value=0.18 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..|+|+|+|.+|..||..|... |.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 5899999999999999999999 99999999853
No 403
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.53 E-value=0.22 Score=39.56 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCe-EEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~ 123 (321)
...++|||+|.+|-.++.+|.+. |.+ +.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 46899999999999999999999 876 9999886
No 404
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.39 E-value=0.21 Score=40.83 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
.-.|+|||||..|..-+..|.+. |.+|+||.+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCc
Confidence 45899999999999999999998 9999999643
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.35 E-value=0.2 Score=42.67 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~ 123 (321)
...|+|||+|..|..+|..|++. |. +++|+|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 56899999999999999999999 88 69999987
No 406
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.21 E-value=1.9 Score=40.80 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=66.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCcccchhhhccchHHHHHHHcCCCcccCCCeEEEecH
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 169 (321)
...|||+|.|-+|++..-.|-.. -++|+||..++.. .+.+++... ..+ ..+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyF---------lFTPLLpS~--------------~vG----Tve~ 106 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYF---------LFTPLLPST--------------TVG----TVEL 106 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc-ccceEEeccccce---------EEeeccCCc--------------ccc----ceee
Confidence 46899999999999999888777 7999999987531 111111000 000 1122
Q ss_pred HHHHHHHHHHHHcCC-CcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCC
Q 020815 170 ALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~ 244 (321)
+.+.+.+..-..+.. ++++++. +..++..++++|.--.+.. +.. .....+..|++|+|+|+....
T Consensus 107 rSIvEPIr~i~r~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~-----~~~----~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 107 RSIVEPIRAIARKKNGEVKYLEA-ECTKIDPDNKKVHCRSLTA-----DSS----DKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred hhhhhhHHHHhhccCCCceEEec-ccEeecccccEEEEeeecc-----CCC----cceeeecccEEEEeccCCCCC
Confidence 344444444343333 5566554 6666665555443221111 000 123678899999999987643
No 407
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.19 E-value=0.19 Score=45.39 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.01 E-value=0.23 Score=42.42 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
...|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 45899999999999999999999 9999999864
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.95 E-value=0.21 Score=46.82 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..+|+|||+|.+|+.+|..|.+. |.+|.++|+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 46799999999999999999999 99999999853
No 410
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.93 E-value=0.2 Score=45.25 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..+++. |++|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 699999999999999999999 99999999875
No 411
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.87 E-value=0.29 Score=37.38 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
|+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 68999999999999999997 88999999975
No 412
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.84 E-value=0.23 Score=45.22 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
+|+|||+|..|...|..|++. |.+|.++.+..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 699999999999999999999 99999999863
No 413
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.75 E-value=0.2 Score=45.17 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 489999999999999999999 99999999874
No 414
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.72 E-value=0.26 Score=43.97 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~ 124 (321)
....|+|||.|..|..+|..|++. | .+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 357999999999999999999999 7 6899999864
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.59 E-value=0.18 Score=45.46 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
.-+|+|||||.+|.-+|.-+... |.+|+|+|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence 46999999999999999999988 9999999987
No 416
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.47 E-value=0.25 Score=45.36 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..++.. |++|.++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 417
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.47 E-value=0.31 Score=44.51 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..|+|||+|..|...|..|++. |.+|.++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 3699999999999999999999 99999999864
No 418
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.16 E-value=0.27 Score=44.57 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk 122 (321)
.|+|||+|..|...|..|++. |.+|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 489999999999999999999 999999988
No 419
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.16 E-value=0.29 Score=38.69 Aligned_cols=33 Identities=24% Similarity=0.653 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
..|+|||+|..|...|..|++. |. ++.|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 5799999999999999999998 76 799999864
No 420
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.12 E-value=0.29 Score=44.28 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
.|+|||+|..|...|..|++. |.+|.++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999999 9999999984
No 421
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.99 E-value=0.26 Score=48.00 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|+|+|++|+.++..+... |.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46899999999999999999888 99999999864
No 422
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.96 E-value=0.32 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|++.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 699999999999999999999 99999999864
No 423
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.96 E-value=0.29 Score=44.26 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.91 E-value=0.33 Score=44.29 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~ 124 (321)
.|.|||+|..|.++|+.|++. | ..+.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 589999999999999999998 7 5899999864
No 425
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.61 E-value=0.38 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.561 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 46899999999999999999999 87 899999863
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.60 E-value=0.35 Score=45.94 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|+|.|+.|+.+|..|... |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 35899999999999999999988 99999999864
No 427
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.44 E-value=0.5 Score=39.11 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.1
Q ss_pred CcccEEEECCCh-HHHHHHHHhhcCCCCeEEEEecc
Q 020815 89 ADTDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 89 ~~~DVvIIGgG~-aGl~aA~~La~~~G~~V~liEk~ 123 (321)
....|+|||+|- +|..+|..|.+. |.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 357999999996 699999999998 8999999985
No 428
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.37 E-value=0.32 Score=43.66 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..+++. |.+|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 599999999999999999999 99999999764
No 429
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.35 E-value=0.39 Score=41.80 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC---eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI---QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~---~V~liEk~~ 124 (321)
+..++|+|+|.+|..+|..|.+. |. ++.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 45899999999999999999998 87 499999973
No 430
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.35 E-value=0.37 Score=43.44 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~ 123 (321)
..|+|||+|.+|.++|+.|++. |. +|.|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 4799999999999999999998 76 79999886
No 431
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.32 E-value=0.4 Score=44.36 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999999999999999999 87 899999864
No 432
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.28 E-value=0.52 Score=43.28 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS 125 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~ 125 (321)
..|.|||+|..|...|+.++.. |+ ++.|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 4799999999999999999988 75 8999998654
No 433
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.03 E-value=0.49 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
+..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 57899999999999999999999 86 899999863
No 434
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.82 E-value=0.4 Score=38.18 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~ 125 (321)
++|+|+|+.+...+..+... |++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999999999999 999999998753
No 435
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.78 E-value=0.53 Score=37.54 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
|+|||.|..|...|..|++. |. ++.|+|...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 89999999999999999999 76 799999864
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.72 E-value=0.5 Score=39.32 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
|+|||+|..|...|..|++. |. ++.|+|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 89999999999999999999 87 599999864
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.58 E-value=0.66 Score=42.51 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~ 124 (321)
...|.|||+|..|.++|+.|+.. ++ .+.|+|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 45899999999999999999988 66 799999754
No 438
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.50 E-value=0.48 Score=44.49 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEecc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQS 123 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~ 123 (321)
+|+|||+|-.|..+|..|+++ + .+|+|.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQN-GDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhC-CCceEEEEeCC
Confidence 799999999999999999998 6 899999997
No 439
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.26 E-value=0.48 Score=43.70 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 599999999999999999999 99999999853
No 440
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.22 E-value=0.55 Score=42.83 Aligned_cols=32 Identities=22% Similarity=0.572 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
.|.|||+|..|...|+.|+.. |. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 589999999999999999997 65 899999843
No 441
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.83 E-value=0.56 Score=42.40 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCe-EEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~liEk~ 123 (321)
..++|+|+|.+|.++|+.|++. |.+ |.|+.|.
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 4699999999999999999998 876 9999886
No 442
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.79 E-value=0.66 Score=39.93 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 57899999999999999999998 77 499999863
No 443
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.55 E-value=0.61 Score=42.79 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 489999999999999999999 99999999853
No 444
>PRK04148 hypothetical protein; Provisional
Probab=88.54 E-value=0.42 Score=37.88 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..+++||.| .|...|..|++. |.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 469999999 899889999999 99999999875
No 445
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.35 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~~ 126 (321)
..||.|||||-+|+.||+-|+-- =..|+|+|=.+..
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh
Confidence 35999999999999999999975 5689999976543
No 446
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.42 E-value=1.4 Score=41.47 Aligned_cols=125 Identities=11% Similarity=0.192 Sum_probs=67.8
Q ss_pred CcccEEEECCChHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCcccchhhhcc--chHHHHH--HHcC-----CCcc
Q 020815 89 ADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFL--DELG-----IDYD 158 (321)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~liEk~~~~gg~~~~~g~~~~~~~~~--~~~~~~l--~~~g-----~~~~ 158 (321)
.+...+|||+|.+..+++..... .++.+|++|-..+..- ++.-.+-..++.. +.....| .+|. +-|.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---ccCCCcchhceecCCCChhhheeecccCCccceeEec
Confidence 35789999999987777665443 2378999987654321 1111111111100 0000000 0110 0010
Q ss_pred cCCCeEEEecHHHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcC
Q 020815 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~At 238 (321)
.+.++ ....++ .++. +-||-++.+..|++|..++..| ..+ ++.+|..|..++||
T Consensus 254 -pd~Ff--vspeDL-----p~~~-nGGvAvl~G~kvvkid~~d~~V---~Ln--------------DG~~I~YdkcLIAT 307 (659)
T KOG1346|consen 254 -PDGFF--VSPEDL-----PKAV-NGGVAVLRGRKVVKIDEEDKKV---ILN--------------DGTTIGYDKCLIAT 307 (659)
T ss_pred -CCcce--eChhHC-----cccc-cCceEEEeccceEEeecccCeE---Eec--------------CCcEeehhheeeec
Confidence 01111 122222 2232 6789999999999998777643 343 34789999999999
Q ss_pred CCCC
Q 020815 239 GHDG 242 (321)
Q Consensus 239 G~~~ 242 (321)
|+..
T Consensus 308 G~~P 311 (659)
T KOG1346|consen 308 GVRP 311 (659)
T ss_pred CcCc
Confidence 9865
No 447
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.37 E-value=0.57 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.++|+|+|..|.++|..|++. |.+|.+.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 589999999999999999999 99999999753
No 448
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.35 E-value=0.66 Score=42.24 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 599999999999999999998 99999999753
No 449
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.31 E-value=0.75 Score=40.40 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCc
Confidence 46899999999999999999998 64 788999864
No 450
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.96 E-value=0.63 Score=43.48 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||.|-.||..|..|++. |.+|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 588999999999999999999 99999999764
No 451
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.96 E-value=0.64 Score=42.21 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
|.|||+|..|..+|+.|+.. ++ +|+|+|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999987 66 999999864
No 452
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.82 E-value=0.75 Score=41.57 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 453
>PRK08328 hypothetical protein; Provisional
Probab=87.77 E-value=0.83 Score=39.83 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=29.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
+..|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 56899999999999999999999 75 688998763
No 454
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.70 E-value=0.81 Score=41.71 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCC--CeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~liEk~~ 124 (321)
.|+|||+|.+|.++|+.|+.. | ..+.|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 489999999999999999998 7 4799999854
No 455
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.69 E-value=0.78 Score=43.46 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|||.|..|..+|..|... |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 45899999999999999999998 99999999765
No 456
>PRK07208 hypothetical protein; Provisional
Probab=87.66 E-value=2.9 Score=40.49 Aligned_cols=59 Identities=22% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCceEEEEEEECCEE-EEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV-GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v-~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
..+.+.|.+.+. +.|++|+++++|++|..+++++ ..+.... .+|...++.||.||.|.-
T Consensus 218 ~~l~~~L~~~l~-~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~----------~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 218 GQLWETAAEKLE-ALGGKVVLNAKVVGLHHDGDGRIAVVVVND----------TDGTEETVTADQVISSMP 277 (479)
T ss_pred chHHHHHHHHHH-HcCCEEEeCCEEEEEEEcCCcEEEEEEEEc----------CCCCEEEEEcCEEEECCC
Confidence 456677777776 5789999999999999887653 3333321 112224689999999887
No 457
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.38 E-value=0.9 Score=40.02 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 57999999999999999999998 75 789998763
No 458
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=87.37 E-value=0.65 Score=44.19 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||.|..|+..|..|++. |.+|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 489999999999999999999 99999999864
No 459
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.25 E-value=0.79 Score=43.71 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||.|..|+..|..|++. |.+|.++|++.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 599999999999999999999 99999999864
No 460
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.20 E-value=0.93 Score=41.22 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
.|.|||+|..|...|+.++.. ++ .|.|+|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 699999999999999999987 65 999999854
No 461
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.01 E-value=0.85 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
...|+|+|+|.+|+.++..|... |.+|.++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 36899999999999999999988 99999999864
No 462
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.90 E-value=0.99 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=29.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCC----------CCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNP----------NIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~----------G~~V~liEk~~ 124 (321)
...|+|||+|..|..++..|++.+ |.+++|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 579999999999999999999861 33889998763
No 463
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.90 E-value=0.76 Score=47.01 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|+.++.. |++|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 699999999999999999999 99999999864
No 464
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.87 E-value=0.93 Score=41.38 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 599999999999999999999 99999999863
No 465
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=86.80 E-value=1.9 Score=40.47 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCC
Q 020815 174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (321)
Q Consensus 174 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG 239 (321)
+.|.+.+. +.|.+|+++++|++|..+++++..+... ++.++.||.||+|+-
T Consensus 201 ~~l~~~l~-~~g~~i~~~~~V~~i~~~~~~~~~~~~~--------------~g~~~~~d~vi~a~p 251 (419)
T TIGR03467 201 EPARRWLD-SRGGEVRLGTRVRSIEANAGGIRALVLS--------------GGETLPADAVVLAVP 251 (419)
T ss_pred HHHHHHHH-HcCCEEEcCCeeeEEEEcCCcceEEEec--------------CCccccCCEEEEcCC
Confidence 44555664 5689999999999999888765433321 125688999999877
No 466
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.76 E-value=0.9 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
..++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 3799999999999999999998 75 599998863
No 467
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.73 E-value=1 Score=38.35 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
..++|+|.|-.|..+|..|.+. |.+|+++|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4799999999999999999999 9999999875
No 468
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.61 E-value=0.99 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccCC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~~ 125 (321)
..++|+|.|.+|+++|..|++. |.+|.+.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 3699999999999999999999 999999997543
No 469
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.54 E-value=0.9 Score=44.44 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..+++. |++|.++|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999874
No 470
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.48 E-value=1.2 Score=37.56 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=29.4
Q ss_pred cccEEEECC-ChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
...++|+|| |..|..+|..|++. |.+|.++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 357999997 99999999999998 8999999875
No 471
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.25 E-value=0.87 Score=46.56 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|+.++.. |++|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 472
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=86.22 E-value=1.4 Score=42.35 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCcEEEcCceEEEEEEECCEEEEEEEeecceecccCCCCCCCceEEEcCeEEEcCCCCCCCcchhhhh
Q 020815 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR 251 (321)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~a~~VI~AtG~~~~~~~~~~~~ 251 (321)
....++.+.+++.|++++.+ ++.++...++.-..|...+. ..++..++.+|.||+++|-..+.+...+.+
T Consensus 416 ~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~EdT---------l~g~~~e~~~DLVVLa~Gmep~~g~~kia~ 485 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVEDT---------LTGEVKEIEADLVVLATGMEPSEGAKKIAK 485 (622)
T ss_pred cHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEEEEec---------cCccceecccceEEEeeccccCcchHHHHH
Confidence 34555666666789999998 66666655443344544432 223457899999999999665555555555
Q ss_pred hhhcC
Q 020815 252 LKSIG 256 (321)
Q Consensus 252 ~~~~g 256 (321)
..++.
T Consensus 486 iLgL~ 490 (622)
T COG1148 486 ILGLS 490 (622)
T ss_pred hcCcc
Confidence 44443
No 473
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.15 E-value=1 Score=41.36 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999853
No 474
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.07 E-value=1.2 Score=38.77 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 46899999999999999999999 76 788998763
No 475
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.06 E-value=0.95 Score=42.08 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=25.4
Q ss_pred cEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~ 124 (321)
.|+|+|+|+.||.++..+... | .+|+++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence 599999999999997666667 6 5677777753
No 476
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.99 E-value=1.2 Score=38.89 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 46899999999999999999998 76 899999764
No 477
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.94 E-value=1.1 Score=40.60 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
...|+|||.|.+|..++..|.+. |.+|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 46899999999999999999999 99999999873
No 478
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=85.93 E-value=1.1 Score=40.43 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~ 123 (321)
..++|+|+|.++-++++.|++. |. ++.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 4799999999999999999998 65 78899875
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.78 E-value=1.1 Score=42.75 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 45799999999999999999999 99999999864
No 480
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.70 E-value=1 Score=43.95 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
-.|+|+|.|.+|++++..|.+. |.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-GARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3699999999999999999888 9999999964
No 481
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.47 E-value=1.5 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=28.0
Q ss_pred cEEEECC-ChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815 92 DVVVVGA-GSAGLSCAYELSKNP-NIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGg-G~aGl~aA~~La~~~-G~~V~liEk~~ 124 (321)
.|.|||+ |..|...|+.|...+ ..++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999862 34699999873
No 482
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=85.39 E-value=1.1 Score=43.33 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHhhcCC-CCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~-G~~V~liEk~~ 124 (321)
.|.|||.|..|+.+|..|++.+ |.+|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5999999999999999999861 48899999754
No 483
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.37 E-value=1.4 Score=40.13 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..|.|||+|..|...|..|++. |.+|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 3699999999999999999999 99999999864
No 484
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=85.36 E-value=1 Score=39.20 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccCC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS 125 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~~ 125 (321)
+..|+|||.|..|..++-.|+|. |. +++|||....
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRs-Gig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARS-GIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHc-CCCeEEEEecccc
Confidence 46899999999999999999998 65 8999998753
No 485
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=85.31 E-value=1.2 Score=39.70 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
-.++|+|+|.+|.++|..|++. |.+|.++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4799999999999999999998 8999999875
No 486
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.26 E-value=1.1 Score=36.62 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.1
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..++|+|=|-.|-.+|..|... |.+|.|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 4799999999999999999999 99999999975
No 487
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.26 E-value=1 Score=43.63 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
.|+|+|.|-+|.++|..|.+. |.+|++.|.+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~-g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAH-LPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHc-CCEEEEEcCC
Confidence 699999999999999999999 9999999964
No 488
>PRK08223 hypothetical protein; Validated
Probab=85.25 E-value=1.2 Score=40.04 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~~ 124 (321)
...|+|||+|..|..+|..|++. |. ++.|+|...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 57999999999999999999999 75 788998764
No 489
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=85.25 E-value=1.1 Score=44.16 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
..++|+|+|.+|.++|+.|++. |.+|.++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4689999999999999999999 8999999874
No 490
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.14 E-value=1.2 Score=43.73 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||+|..|...|..|++. |+.|.++|+..
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~ 40 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA 40 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 491
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=85.09 E-value=1.4 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=29.2
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCC-eEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~liEk~ 123 (321)
...++|||+|.++-++++.|.+. |. +|.|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 45799999999999999999998 75 69999875
No 492
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.03 E-value=1.8 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=28.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEec
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk 122 (321)
...++|+|.|..|..++..|.+..+.++.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 357999999999999999998863578999988
No 493
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.01 E-value=1.4 Score=38.25 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.5
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~ 123 (321)
...|+|||||..++.=+..|.+. |.+|+||-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 45799999999999999999999 9999999764
No 494
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.86 E-value=1.1 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
+-+++|+|.|..|...|..|.++ |.+|++||+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 35899999999999999999999 99999999975
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.85 E-value=1.2 Score=40.00 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
.|.|||.|..|.+.|..|.+. |.+|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 489999999999999999999 99999999863
No 496
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.79 E-value=1.5 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=29.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC-CeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~~ 124 (321)
...|.|||+|..|...|+.|+.. + ..+.|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~-~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQK-NLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCCeEEEEECCC
Confidence 35799999999999999999988 7 5899999864
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.75 E-value=1.3 Score=39.95 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
...++|||.|..|..+|..|... |.+|.++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45899999999999999999999 89999999863
No 498
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.59 E-value=1.1 Score=46.00 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCCeEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~liEk~~ 124 (321)
..|.|||+|..|...|+.++.. |++|+++|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 3599999999999999999999 99999999864
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.57 E-value=1.4 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=29.7
Q ss_pred cccEEEECCChHHHHHHHHhhcCCC-CeEEEEecc
Q 020815 90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQS 123 (321)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~liEk~ 123 (321)
...++|+|+|.+|.+++..|.+. | .+|.|+.|.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 35799999999999999999998 8 789999886
No 500
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.44 E-value=1.5 Score=39.81 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHhhcCCCC--eEEEEeccC
Q 020815 91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV 124 (321)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~liEk~~ 124 (321)
..|.|||.|..|.+.|..|.+. |. +|.++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 3699999999999999999988 74 899998863
Done!