Your job contains 1 sequence.
>020817
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFD
LSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGD
DRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSIT
EMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGM
PITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKEL
TNEFNVLEAGLWNSISLDKGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020817
(321 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206051 - symbol:AT1G60990 species:3702 "Arabi... 1109 2.2e-112 1
TIGR_CMR|CHY_0489 - symbol:CHY_0489 "glycine cleavage sys... 212 1.8e-15 1
TIGR_CMR|SPO_3396 - symbol:SPO_3396 "FAD dependent oxidor... 176 2.3e-10 1
TIGR_CMR|BA_4449 - symbol:BA_4449 "glycine cleavage syste... 162 2.2e-09 1
UNIPROTKB|Q8EIH8 - symbol:ygfZ "Folate-dependent protein ... 133 1.5e-08 2
TIGR_CMR|SO_0861 - symbol:SO_0861 "conserved hypothetical... 133 1.5e-08 2
UNIPROTKB|P64220 - symbol:gcvT "Aminomethyltransferase" s... 152 3.2e-08 1
TIGR_CMR|SPO_3400 - symbol:SPO_3400 "aminomethyl transfer... 150 2.0e-07 1
UNIPROTKB|F1RF50 - symbol:DMGDH "Uncharacterized protein"... 148 3.7e-07 1
ASPGD|ASPL0000076695 - symbol:AN8654 species:162425 "Emer... 148 4.1e-07 1
MGI|MGI:1921379 - symbol:Dmgdh "dimethylglycine dehydroge... 144 1.0e-06 1
DICTYBASE|DDB_G0292326 - symbol:gcvT "aminomethyltransfer... 133 5.5e-06 1
UNIPROTKB|F1MDJ6 - symbol:DMGDH "Uncharacterized protein"... 137 6.2e-06 1
UNIPROTKB|B4E1J9 - symbol:DMGDH "cDNA FLJ50354, highly si... 132 6.9e-06 1
UNIPROTKB|E1BSV1 - symbol:DMGDH "Uncharacterized protein"... 136 7.9e-06 1
SGD|S000002426 - symbol:GCV1 "T subunit of the mitochondr... 130 1.2e-05 1
UNIPROTKB|F8W6P8 - symbol:DMGDH "Dimethylglycine dehydrog... 132 1.3e-05 1
UNIPROTKB|Q8TCC6 - symbol:DMGDH "Dimethylglycine dehydrog... 132 1.4e-05 1
UNIPROTKB|P49364 - symbol:GDCST "Aminomethyltransferase, ... 128 2.1e-05 1
UNIPROTKB|Q9UI17 - symbol:DMGDH "Dimethylglycine dehydrog... 132 2.2e-05 1
WB|WBGene00017765 - symbol:gcst-1 species:6239 "Caenorhab... 127 2.6e-05 1
RGD|620453 - symbol:Dmgdh "dimethylglycine dehydrogenase"... 130 3.6e-05 1
UNIPROTKB|Q63342 - symbol:Dmgdh "Dimethylglycine dehydrog... 130 3.6e-05 1
UNIPROTKB|F1PK75 - symbol:DMGDH "Uncharacterized protein"... 129 4.3e-05 1
UNIPROTKB|F1PKA8 - symbol:DMGDH "Uncharacterized protein"... 129 4.6e-05 1
ZFIN|ZDB-GENE-080227-8 - symbol:dmgdh "dimethylglycine de... 124 0.00017 1
TIGR_CMR|SPO_A0311 - symbol:SPO_A0311 "FAD dependent oxid... 122 0.00026 1
TAIR|locus:2008900 - symbol:AT1G11860 species:3702 "Arabi... 118 0.00028 1
WB|WBGene00021355 - symbol:Y37E3.17 species:6239 "Caenorh... 118 0.00075 1
>TAIR|locus:2206051 [details] [associations]
symbol:AT1G60990 species:3702 "Arabidopsis thaliana"
[GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=IGI] InterPro:IPR006222 Pfam:PF01571 EMBL:CP002684
GO:GO:0009507 eggNOG:COG0354 InterPro:IPR017703 TIGRFAMs:TIGR03317
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
UniGene:At.36556 UniGene:At.71340 EMBL:AK175484 IPI:IPI00536295
RefSeq:NP_001077748.1 RefSeq:NP_001117522.1 RefSeq:NP_176295.3
ProteinModelPortal:Q681Y3 PaxDb:Q681Y3 PRIDE:Q681Y3
EnsemblPlants:AT1G60990.1 EnsemblPlants:AT1G60990.2
EnsemblPlants:AT1G60990.3 GeneID:842391 KEGG:ath:AT1G60990
TAIR:At1g60990 HOGENOM:HOG000232517 InParanoid:Q681Y3 OMA:RLSWLHS
PhylomeDB:Q681Y3 ProtClustDB:CLSN2681534 Genevestigator:Q681Y3
Uniprot:Q681Y3
Length = 432
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 213/315 (67%), Positives = 251/315 (79%)
Query: 14 VGSTSRLHNTRTTKFFQNGVVLTQKKTLSLR----RRRSASIPPTAV----LPFDLSPPP 65
+ S S + NT NG VL ++++LSLR R R + + L FD SPPP
Sbjct: 16 IDSVSHITNTALLPCLYNGTVL-RRRSLSLRKCGFRERKFQLRCVSASSDSLQFDFSPPP 74
Query: 66 IDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125
IDHD L+T+ G K+S +G+VE+F ND EALDA DNGV VDLSHFGRIRVSGDDR F
Sbjct: 75 IDHDFLDTISVSGGKVSEDGVVESFDNDDEALDAFDNGVVVVDLSHFGRIRVSGDDRAHF 134
Query: 126 LHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNK 185
LHNQ+TANFE L EGQGCDTVFVTPTARTIDIAHAWIMKNA++L VSP TC SI EMLNK
Sbjct: 135 LHNQTTANFESLYEGQGCDTVFVTPTARTIDIAHAWIMKNAILLTVSPTTCQSIIEMLNK 194
Query: 186 YVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVG 245
Y+FFADKVEI+DITKQTCLF + GPKSNQ+M LNLGDL+G+ YG H+HYS +GMPITVG
Sbjct: 195 YIFFADKVEIKDITKQTCLFALAGPKSNQIMSKLNLGDLIGQPYGRHQHYSFDGMPITVG 254
Query: 246 VGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFN 305
VG++IS+EGF++LMSP A SVW+TLL++GA+PMGS AWEKLRI +GRPAP +EL+ EFN
Sbjct: 255 VGSLISDEGFTMLMSPGGAVSVWKTLLAEGAIPMGSVAWEKLRITQGRPAPERELSKEFN 314
Query: 306 VLEAGLWNSISLDKG 320
VLEAGLWNSISL+KG
Sbjct: 315 VLEAGLWNSISLNKG 329
>TIGR_CMR|CHY_0489 [details] [associations]
symbol:CHY_0489 "glycine cleavage system T protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004047 "aminomethyltransferase activity" evidence=ISS]
[GO:0019464 "glycine decarboxylation via glycine cleavage system"
evidence=ISS] InterPro:IPR006222 InterPro:IPR006223
InterPro:IPR022903 Pfam:PF01571 PIRSF:PIRSF006487 GO:GO:0005737
GO:GO:0008483 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 KO:K00605
PANTHER:PTHR13847:SF5 eggNOG:COG0404 HOGENOM:HOG000239380
TIGRFAMs:TIGR00528 HAMAP:MF_00259 RefSeq:YP_359347.1 HSSP:P27248
ProteinModelPortal:Q3AET7 SMR:Q3AET7 STRING:Q3AET7 GeneID:3727042
KEGG:chy:CHY_0489 PATRIC:21274127 OMA:KPAFWGR
BioCyc:CHYD246194:GJCN-490-MONOMER Uniprot:Q3AET7
Length = 360
Score = 212 (79.7 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 59/223 (26%), Positives = 101/223 (45%)
Query: 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID-- 156
A V D+SH G I ++G +F++ T + L G T P T+D
Sbjct: 41 AVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDL 100
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
+A+ + + +++V + + +L +Y + D V + D++ +T + GP++ +++
Sbjct: 101 LAYKYSTERYLLVVNAANKDKDLAHIL-QYRW--DDVTVTDLSDETAEIALQGPRAQEIL 157
Query: 217 RDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA 276
+ L DL Y V G+P V E+GF + +P A +W LL+ G
Sbjct: 158 QKLTAFDLNQIKYFGFAEIEVAGVPCLVSRTGYTGEDGFEIYFAPNLATKIWNELLNLGV 217
Query: 277 VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
P G A + LR P G EL+ E LEAGL ++ +K
Sbjct: 218 KPAGLGARDTLRFEACLPLYGHELSAEITPLEAGLGWAVKFNK 260
>TIGR_CMR|SPO_3396 [details] [associations]
symbol:SPO_3396 "FAD dependent oxidoreductase/aminomethyl
transferase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004047
"aminomethyltransferase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] [GO:0016491 "oxidoreductase
activity" evidence=ISS] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=ISS] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016491 GO:GO:0004047 GO:GO:0006546
InterPro:IPR013977 Pfam:PF08669 HOGENOM:HOG000251716 OMA:DWFDIVG
KO:K00314 ProtClustDB:CLSK863205 RefSeq:YP_168592.1
ProteinModelPortal:Q5LN16 GeneID:3195707 KEGG:sil:SPO3396
PATRIC:23380247 Uniprot:Q5LN16
Length = 816
Score = 176 (67.0 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 66/239 (27%), Positives = 111/239 (46%)
Query: 90 FGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVT 149
F N E A G+ D+S FG+IRV G D +L++ + F++ G+ T F+
Sbjct: 472 FDNVAEEHKAIRTGLGMYDMSSFGKIRVEGPDATAYLNHIAGGQFDV-PVGRIVYTQFLN 530
Query: 150 PTART-IDIAHAWIMKNAVILVVSPLT-CSSITEMLNKYVFFADKVEIQDITKQTCLFVV 207
D+ + + A ++V T + T M+ F +V I D+T + V
Sbjct: 531 VNGGIEADVTVTRLSETAYLVVTPAATRYADQTRMMRLVGDF--RVVITDVTAGEGVLAV 588
Query: 208 VGPKSNQVMRDLNLGDLVGEA--YGTHRHYSVNGMPIT-VGVGNVISEEGFSLLMSPAAA 264
+GPK+ ++M ++ D + +GT + + GM + V + E G+ + +S A
Sbjct: 589 MGPKARELMARVSPNDFSNDVNPFGTAQEIEL-GMGLARVHRVTYVGELGWEIYVSSDMA 647
Query: 265 GSVWETLLSQGA-VPM---GSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G +ETL G + M G + + RI K G ++T E +VLEAGL ++ DK
Sbjct: 648 GHAFETLFEAGQDLGMKLCGMHVMDCCRIEKAFRHFGHDITPEDHVLEAGLGFAVKTDK 706
>TIGR_CMR|BA_4449 [details] [associations]
symbol:BA_4449 "glycine cleavage system T protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0004047
"aminomethyltransferase activity" evidence=ISS] [GO:0019464
"glycine decarboxylation via glycine cleavage system" evidence=ISS]
InterPro:IPR006222 InterPro:IPR006223 InterPro:IPR022903
Pfam:PF01571 PIRSF:PIRSF006487 GO:GO:0005737 GO:GO:0008483
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 KO:K00605
PANTHER:PTHR13847:SF5 eggNOG:COG0404 TIGRFAMs:TIGR00528
RefSeq:NP_846677.1 RefSeq:YP_021093.1 RefSeq:YP_030380.1
ProteinModelPortal:Q81M06 SMR:Q81M06 IntAct:Q81M06 DNASU:1087845
EnsemblBacteria:EBBACT00000011986 EnsemblBacteria:EBBACT00000017692
EnsemblBacteria:EBBACT00000020316 GeneID:1087845 GeneID:2818765
GeneID:2849651 KEGG:ban:BA_4449 KEGG:bar:GBAA_4449 KEGG:bat:BAS4131
HOGENOM:HOG000239381 OMA:LGARDVC ProtClustDB:PRK00389
BioCyc:BANT260799:GJAJ-4187-MONOMER
BioCyc:BANT261594:GJ7F-4328-MONOMER HAMAP:MF_00259 Uniprot:Q81M06
Length = 366
Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 55/236 (23%), Positives = 97/236 (41%)
Query: 90 FGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVT 149
F + E +A D+SH G + V G D + FL T + L+ G T
Sbjct: 32 FSSIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCY 91
Query: 150 PTARTIDIAHAWIM-KNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVV 208
T+D + + +LV++ E L +V D + +++ + +
Sbjct: 92 ENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHVI-GDATVV-NVSSEVAQLAIQ 149
Query: 209 GPKSNQVMRDLNLGDLVGEAYGTHRH-YSVNGMPITVGVGNVISEEGFSLLMSPAAAGSV 267
GPK+ +++ + DL + ++ V+G+P V E+GF + A +
Sbjct: 150 GPKAEGILQKVVSEDLKEIKFFKFKNDILVDGIPALVSRTGYTGEDGFEIYCKSEDAAKL 209
Query: 268 WETLLSQGAVP----MGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
WE LL GA G A + LR P G+EL+ + +EAG+ ++ +K
Sbjct: 210 WEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKTNK 265
>UNIPROTKB|Q8EIH8 [details] [associations]
symbol:ygfZ "Folate-dependent protein involved in synthesis
and repair of FeS clusters YgfZ" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006222 Pfam:PF01571
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR KO:K06980
InterPro:IPR017703 TIGRFAMs:TIGR03317 GO:GO:0004047 GO:GO:0006546
HOGENOM:HOG000261300 OMA:NKRALYI RefSeq:NP_716492.1
ProteinModelPortal:Q8EIH8 GeneID:1168708 KEGG:son:SO_0861
PATRIC:23521383 ProtClustDB:CLSK905978 Uniprot:Q8EIH8
Length = 318
Score = 133 (51.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 35/131 (26%), Positives = 64/131 (48%)
Query: 97 LDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID 156
LDA+ + +LSH G I+V+G+ F+H Q TA+ L Q P + +
Sbjct: 12 LDASMPPLMLANLSHLGLIKVAGEQGRSFIHGQVTADISSLETNQWRWGAHCDPKGKMLA 71
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
+ +K+A++L++ T L KY F+ K + + +++ CL V G ++NQ +
Sbjct: 72 SFRTFTIKDALLLLMPKDTIEVDLPQLQKYAVFS-KATLSNASEEWCLLGVAGEQANQFV 130
Query: 217 RDLNLGDLVGE 227
+ G++ E
Sbjct: 131 TQ-HFGEVAQE 140
Score = 60 (26.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 233 RHYSVNGMPITVGV-GNVISE-EGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRII 290
+H+ +T+ G ++ + + F L++ P AA + L+++ V ++AW+ L I
Sbjct: 132 QHFGEVAQELTLTEHGAILKDADRFILVLQPQAASA----LIAEHTV-FDASAWQALEIA 186
Query: 291 KGRPAPGKELTNEFNVLEAGLW--NSISLDKG 320
G P N++ L N IS +KG
Sbjct: 187 AGYPNLAPSHANQYVPQMCNLQAINGISFNKG 218
>TIGR_CMR|SO_0861 [details] [associations]
symbol:SO_0861 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006222 Pfam:PF01571 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR KO:K06980 InterPro:IPR017703
TIGRFAMs:TIGR03317 GO:GO:0004047 GO:GO:0006546 HOGENOM:HOG000261300
OMA:NKRALYI RefSeq:NP_716492.1 ProteinModelPortal:Q8EIH8
GeneID:1168708 KEGG:son:SO_0861 PATRIC:23521383
ProtClustDB:CLSK905978 Uniprot:Q8EIH8
Length = 318
Score = 133 (51.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 35/131 (26%), Positives = 64/131 (48%)
Query: 97 LDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID 156
LDA+ + +LSH G I+V+G+ F+H Q TA+ L Q P + +
Sbjct: 12 LDASMPPLMLANLSHLGLIKVAGEQGRSFIHGQVTADISSLETNQWRWGAHCDPKGKMLA 71
Query: 157 IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVM 216
+ +K+A++L++ T L KY F+ K + + +++ CL V G ++NQ +
Sbjct: 72 SFRTFTIKDALLLLMPKDTIEVDLPQLQKYAVFS-KATLSNASEEWCLLGVAGEQANQFV 130
Query: 217 RDLNLGDLVGE 227
+ G++ E
Sbjct: 131 TQ-HFGEVAQE 140
Score = 60 (26.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 233 RHYSVNGMPITVGV-GNVISE-EGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRII 290
+H+ +T+ G ++ + + F L++ P AA + L+++ V ++AW+ L I
Sbjct: 132 QHFGEVAQELTLTEHGAILKDADRFILVLQPQAASA----LIAEHTV-FDASAWQALEIA 186
Query: 291 KGRPAPGKELTNEFNVLEAGLW--NSISLDKG 320
G P N++ L N IS +KG
Sbjct: 187 AGYPNLAPSHANQYVPQMCNLQAINGISFNKG 218
>UNIPROTKB|P64220 [details] [associations]
symbol:gcvT "Aminomethyltransferase" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR006222
InterPro:IPR006223 InterPro:IPR022903 Pfam:PF01571
PIRSF:PIRSF006487 GO:GO:0005737 GO:GO:0040007 GO:GO:0005618
GO:GO:0008483 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842579 GO:GO:0004047 GO:GO:0006546
InterPro:IPR013977 Pfam:PF08669 KO:K00605 PANTHER:PTHR13847:SF5
eggNOG:COG0404 TIGRFAMs:TIGR00528 HOGENOM:HOG000239381
ProtClustDB:PRK00389 HAMAP:MF_00259 OMA:KPAFWGR PIR:D70786
RefSeq:NP_216727.1 RefSeq:NP_336739.1 RefSeq:YP_006515631.1
ProteinModelPortal:P64220 SMR:P64220
EnsemblBacteria:EBMYCT00000003464 EnsemblBacteria:EBMYCT00000070612
GeneID:13318900 GeneID:887233 GeneID:924158 KEGG:mtc:MT2267
KEGG:mtu:Rv2211c KEGG:mtv:RVBD_2211c PATRIC:18126736
TubercuList:Rv2211c Uniprot:P64220
Length = 367
Score = 152 (58.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 56/218 (25%), Positives = 97/218 (44%)
Query: 98 DAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID- 156
+A V D+SH G+ V G QF+++ T + + G+ T+ T + ID
Sbjct: 43 NATRTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDD 102
Query: 157 -IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
IA+ ++ + + LV + +++ L + I ++ + + V GP S V
Sbjct: 103 LIAY-YVSDDEIFLVPNAANTAAVVGALQAAA--PGGLSITNLHRSYAVLAVQGPCSTDV 159
Query: 216 MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ- 274
+ L L + Y + S +G+P+ V E G+ LL +AG V++ LL+
Sbjct: 160 LTALGLPTEMD--YMGYADASYSGVPVRVCRTGYTGEHGYELLPPWESAGVVFDALLAAV 217
Query: 275 ---GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEA 309
G P G A + LR G P G EL+ + + L+A
Sbjct: 218 SAAGGEPAGLGARDTLRTEMGYPLHGHELSLDISPLQA 255
>TIGR_CMR|SPO_3400 [details] [associations]
symbol:SPO_3400 "aminomethyl transferase family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004047
"aminomethyltransferase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016491 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 HOGENOM:HOG000251716
KO:K00315 ProtClustDB:CLSK863205 RefSeq:YP_168596.1
ProteinModelPortal:Q5LN12 GeneID:3193141 KEGG:sil:SPO3400
PATRIC:23380255 OMA:DPMPEDF Uniprot:Q5LN12
Length = 815
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 38/127 (29%), Positives = 66/127 (51%)
Query: 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISE 252
V ++D+T +V GPKS +++ L+ DL + + TH+ +V G P + + E
Sbjct: 582 VTVEDVTTTRDTLIVTGPKSREILAGLSDADL-SQGWLTHQAATVAGQPAFLIRVSFAGE 640
Query: 253 EGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW 312
G+ + ++++ LL GA P G A LR+ KG A +L+ ++++LE GL
Sbjct: 641 LGWEVHALNEHMPAIYDALLGAGAKPFGMWALNSLRLEKGYRAWKGDLSTDYSMLEGGLE 700
Query: 313 NSISLDK 319
+ LDK
Sbjct: 701 RFVKLDK 707
>UNIPROTKB|F1RF50 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
OMA:REVGKMI GO:GO:0047865 GeneTree:ENSGT00530000063120
EMBL:CU468550 Ensembl:ENSSSCT00000015413 ArrayExpress:F1RF50
Uniprot:F1RF50
Length = 866
Score = 148 (57.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 60/227 (26%), Positives = 106/227 (46%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTV--FVTPTART---IDIA 158
V +DLS FG+ V G D ++ L + AN ++ + GC + +TP R D +
Sbjct: 529 VGVIDLSPFGKFTVKGQDSVRLL-DHLFAN--VIPQ-VGCTNISHMLTPKGRVYAEFDCS 584
Query: 159 HAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRD 218
H +V S +T +SI + + V VEI+++T + V GP + +V++
Sbjct: 585 HQ-SPTQSVSPEKSSVTITSIKWIEEEAVTGGYNVEIKNMTDVLGVLGVAGPHARKVLQK 643
Query: 219 LNLGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS--- 273
L DL A+ + + V +P+T + E G+ L + ++++ +++
Sbjct: 644 LTSEDLSDGAFKFLQTKAFKVANIPVTAIRISYTGELGWELYHRREDSAALYDIIMNAGQ 703
Query: 274 -QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
+G G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 704 EEGIDNFGTYAMNALRLEKAFRAWGSEMNCDTNPLEAGLEYFVKLNK 750
>ASPGD|ASPL0000076695 [details] [associations]
symbol:AN8654 species:162425 "Emericella nidulans"
[GO:0004047 "aminomethyltransferase activity" evidence=RCA]
[GO:0006520 "cellular amino acid metabolic process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0006546 "glycine
catabolic process" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 GO:GO:0005737 GO:GO:0016491 EMBL:BN001303
EMBL:AACD01000158 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 eggNOG:COG0665 HOGENOM:HOG000251716 RefSeq:XP_681923.1
ProteinModelPortal:Q5ASS6 SMR:Q5ASS6 STRING:Q5ASS6
EnsemblFungi:CADANIAT00006391 GeneID:2868571 KEGG:ani:AN8654.2
OMA:RRSPIHE OrthoDB:EOG4G4KZH Uniprot:Q5ASS6
Length = 948
Score = 148 (57.2 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 53/230 (23%), Positives = 101/230 (43%)
Query: 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161
N VA D+S F R VSG + L T + ++ R G + + + +
Sbjct: 591 NAVAMYDMSSFHRFIVSGPGAVALLQGLGTVDVDV-RPGTIVYALLLNENGGIY--SDVF 647
Query: 162 IMK-NAVILVVSPLTCSSITEMLNKYVFF-----ADKVEIQDITKQTCLFVVVGPKSNQV 215
+ + + + T + + + K + AD V ++D+T TC + GP++ V
Sbjct: 648 VTRLGSFTYQIGANTATDLAYLARKARYQTQKSPADWVHVEDVTGGTCAIGLWGPRAADV 707
Query: 216 MRDLNLG---DLVGEA--YGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWET 270
+ L L D+ ++ Y + ++ +P+T+ + + E G+ + S +WE
Sbjct: 708 LHSLPLPRETDISNKSLPYMRAKAVTIASIPVTLFRKSYVGEYGWEIQTSAEHGARLWEA 767
Query: 271 LLS----QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSIS 316
+ + G + G A+ LRI KG G ++T E + EAGL ++I+
Sbjct: 768 IFNAGKRHGLIAAGRAAFNALRIEKGYRTYGVDMTTEHDPYEAGLGSAIA 817
>MGI|MGI:1921379 [details] [associations]
symbol:Dmgdh "dimethylglycine dehydrogenase precursor"
species:10090 "Mus musculus" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0005542 "folic acid binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006544 "glycine metabolic
process" evidence=ISO] [GO:0006546 "glycine catabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0047865 "dimethylglycine dehydrogenase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO]
[GO:0055114 "oxidation-reduction process" evidence=ISO]
InterPro:IPR006076 InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571
UniPathway:UPA00291 MGI:MGI:1921379 GO:GO:0005739 GO:GO:0050660
EMBL:AC131739 GO:GO:0006579 EMBL:CT030023 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 GO:GO:0005542
eggNOG:COG0665 CTD:29958 HOGENOM:HOG000251716 HOVERGEN:HBG081945
KO:K00315 OMA:REVGKMI OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:AK004755
EMBL:BC024126 IPI:IPI00120123 RefSeq:NP_083048.1 UniGene:Mm.21789
ProteinModelPortal:Q9DBT9 SMR:Q9DBT9 STRING:Q9DBT9
PhosphoSite:Q9DBT9 PaxDb:Q9DBT9 PRIDE:Q9DBT9
Ensembl:ENSMUST00000048001 GeneID:74129 KEGG:mmu:74129
UCSC:uc007rll.1 GeneTree:ENSGT00530000063120 InParanoid:B1B1D0
NextBio:339854 Bgee:Q9DBT9 CleanEx:MM_DMGDH Genevestigator:Q9DBT9
GermOnline:ENSMUSG00000042102 Uniprot:Q9DBT9
Length = 869
Score = 144 (55.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 57/224 (25%), Positives = 103/224 (45%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWI 162
V +DLS FG+ + G D Q L + AN I + G + +TP R ++ +
Sbjct: 522 VGVIDLSPFGKFNIKGRDSTQLL-DHLFANV-IPKVGFTNISHMLTPRGRVYAELTVSQQ 579
Query: 163 MKNAVILVVSPLTCSSITEMLNKYVFFAD-KVEIQDITKQTCLFVVVGPKSNQVMRDLNL 221
+L+ + + + F VEIQ+IT + + V GP + +V++ L
Sbjct: 580 SPGEFLLITGSGSELHDLRWIEEAAFRGGYDVEIQNITDEFGVLGVAGPYARRVLQKLTS 639
Query: 222 GDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----QG 275
DL +A+ + ++++ +P+T + E G+ L + +++E ++S +G
Sbjct: 640 EDLSDDAFKFLQTKSFNISDIPVTAIRISYTGELGWELYHRREDSATLYERIMSAGQEEG 699
Query: 276 AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 700 IGDFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLEYFVKLNK 743
>DICTYBASE|DDB_G0292326 [details] [associations]
symbol:gcvT "aminomethyltransferase" species:44689
"Dictyostelium discoideum" [GO:0006546 "glycine catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008483 "transaminase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR006222
InterPro:IPR006223 Pfam:PF01571 PIRSF:PIRSF006487
dictyBase:DDB_G0292326 GO:GO:0005739 GO:GO:0008483
GenomeReviews:CM000155_GR EMBL:AAFI02000189 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 KO:K00605
PANTHER:PTHR13847:SF5 eggNOG:COG0404 OMA:KALYGGM TIGRFAMs:TIGR00528
RefSeq:XP_629708.1 HSSP:P48728 ProteinModelPortal:Q54DD3
STRING:Q54DD3 PRIDE:Q54DD3 EnsemblProtists:DDB0231218
GeneID:8628622 KEGG:ddi:DDB_G0292326 ProtClustDB:CLSZ2429438
Uniprot:Q54DD3
Length = 403
Score = 133 (51.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 51/220 (23%), Positives = 93/220 (42%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAV 167
D+SH G++R+ G DR++F + A+ + L G +VF ID +++
Sbjct: 71 DVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMITNAGDSL 130
Query: 168 ILVVSPLTCSS--ITEMLNKYVFFADKVEIQDITKQTC----LFVVVGPKSNQVMRD-LN 220
+VV+ C+ I+ + K F D++ Q L + GP + +++ +
Sbjct: 131 YVVVNA-GCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGPTTESILQKFVK 189
Query: 221 LGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS------- 273
D+ + T R ++ G+ V E+GF + + A + E L+
Sbjct: 190 DQDITNMEFMTQRPMTIAGIDCIVTRCGYTGEDGFEISVPSKQAVRLAELFLATSNASIE 249
Query: 274 QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-W 312
G P G A + LR+ G G +L ++ +EA L W
Sbjct: 250 SGIKPAGLGARDSLRLEAGLCLYGHDLNDDITPIEASLNW 289
>UNIPROTKB|F1MDJ6 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
OMA:REVGKMI GO:GO:0047865 GeneTree:ENSGT00530000063120
EMBL:DAAA02027819 IPI:IPI00715285 Ensembl:ENSBTAT00000036611
Uniprot:F1MDJ6
Length = 866
Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 57/226 (25%), Positives = 103/226 (45%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
V +DLS FG+ + G D I+ L + AN I + G + +TP R + ++H
Sbjct: 529 VGVIDLSPFGKFNIKGQDSIRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 586
Query: 161 WIMKNAVILVV-SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDL 219
+LV S + + + + VEI++IT + + V GP S +V++ L
Sbjct: 587 --SPGEFLLVTGSGSELHDLRWIEEEAIKGGYDVEIKNITDELGVLGVAGPYSRKVLQKL 644
Query: 220 NLGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS---- 273
DL + + V+ +P+T + E G+ L + ++++ +++
Sbjct: 645 TSEDLSDNVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSAALYDAIMNAGQE 704
Query: 274 QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
+G G+ A LR+ K A G E+ + N LEAGL + + L+K
Sbjct: 705 EGIDNFGTYAMNALRLEKAFRAWGSEMNCDTNPLEAGLESFVKLNK 750
>UNIPROTKB|B4E1J9 [details] [associations]
symbol:DMGDH "cDNA FLJ50354, highly similar to
Dimethylglycine dehydrogenase, mitochondrial (EC 1.5.99.2)"
species:9606 "Homo sapiens" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006546 "glycine catabolic process" evidence=IEA]
InterPro:IPR006222 Pfam:PF01571 GO:GO:0005737 EMBL:AC020937
EMBL:AC008502 GO:GO:0004047 GO:GO:0006546 EMBL:AC016559
UniGene:Hs.655653 HGNC:HGNC:24475 EMBL:AK303873 IPI:IPI01013014
SMR:B4E1J9 STRING:B4E1J9 Ensembl:ENST00000540686 UCSC:uc011ctg.1
Uniprot:B4E1J9
Length = 394
Score = 132 (51.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 56/225 (24%), Positives = 104/225 (46%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
VA DLS FG+ + G D I+ L + AN I + G + +TP R + ++H
Sbjct: 149 VAVTDLSPFGKFNIKGQDSIRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 206
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + V GP++ +V++ L
Sbjct: 207 -SPGEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKNITDELGVLGVAGPQARKVLQKLT 265
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ +++ +
Sbjct: 266 SEDLSDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAIMNAGQEE 325
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 326 GIDNFGTYAMNALRLEKAFRAWGLEMNCDTNPLEAGLEYFVKLNK 370
>UNIPROTKB|E1BSV1 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004047 "aminomethyltransferase activity" evidence=IEA]
[GO:0006546 "glycine catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0047865 "dimethylglycine
dehydrogenase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
OMA:REVGKMI GO:GO:0047865 GeneTree:ENSGT00530000063120
EMBL:AADN02046136 EMBL:AADN02046137 EMBL:AADN02046138
EMBL:AADN02046139 EMBL:AADN02046140 EMBL:AADN02046141
EMBL:AADN02046142 IPI:IPI00588243 ProteinModelPortal:E1BSV1
Ensembl:ENSGALT00000007151 Uniprot:E1BSV1
Length = 862
Score = 136 (52.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 57/223 (25%), Positives = 102/223 (45%)
Query: 107 VDLSHFGRIRVSGDDRIQFLHN--QSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIM 163
+DLS FG+ +V G D ++ L + + AN + G + +TP + ++ + +
Sbjct: 528 IDLSPFGKFKVKGTDSVKLLDHLFANVAN----KVGSTNISHMLTPKGKVYAELTVSQLY 583
Query: 164 KNAVILVV-SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG 222
+LV S + + + V KVEI+++T + + V GP + QV++ L
Sbjct: 584 PGEFMLVTGSGSELHDLRWIEEEVVRGGYKVEIENMTDEMGVLGVAGPYARQVLQRLTAE 643
Query: 223 DLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLM----SPAAAGSVWETLLSQGA 276
DL ++ RH ++ + +T + E G+ L S A ++ + +G
Sbjct: 644 DLSDGSFKFLQSRHLKLSDIAVTAIRISYTGELGWELYHRKEDSVALYNAIMDAGQKEGI 703
Query: 277 VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G+ A LR+ KG A G E+ + N LEAGL + L+K
Sbjct: 704 DNFGTYALNALRLEKGFRAWGAEMNCDTNPLEAGLEYFVKLNK 746
>SGD|S000002426 [details] [associations]
symbol:GCV1 "T subunit of the mitochondrial glycine
decarboxylase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0006544 "glycine
metabolic process" evidence=IMP] [GO:0004375 "glycine dehydrogenase
(decarboxylating) activity" evidence=ISS;IMP] [GO:0006730
"one-carbon metabolic process" evidence=IGI;IMP] [GO:0006546
"glycine catabolic process" evidence=IEA;IC] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008483 "transaminase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005960 "glycine cleavage complex" evidence=ISS]
InterPro:IPR006222 InterPro:IPR006223 Pfam:PF01571
PIRSF:PIRSF006487 SGD:S000002426 GO:GO:0005739 GO:GO:0008483
EMBL:BK006938 GO:GO:0006730 GO:GO:0004047 GO:GO:0006546
InterPro:IPR013977 Pfam:PF08669 EMBL:X95966 EMBL:Z49770
GO:GO:0005960 KO:K00605 PANTHER:PTHR13847:SF5 eggNOG:COG0404
HOGENOM:HOG000239380 TIGRFAMs:TIGR00528
GeneTree:ENSGT00510000047333 OMA:KPAFWGR OrthoDB:EOG4WT0K6
EMBL:L41522 EMBL:Z74315 PIR:S54642 RefSeq:NP_010302.1
ProteinModelPortal:P48015 SMR:P48015 IntAct:P48015 STRING:P48015
PaxDb:P48015 PeptideAtlas:P48015 EnsemblFungi:YDR019C GeneID:851582
KEGG:sce:YDR019C CYGD:YDR019c NextBio:969049 Genevestigator:P48015
GermOnline:YDR019C Uniprot:P48015
Length = 400
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 53/216 (24%), Positives = 91/216 (42%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID--IAHAWIMKN 165
D+SH + ++SG ++FL + +F L G G +V + P +D I N
Sbjct: 64 DVSHMLQSKLSGPHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDN 123
Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQ-DITKQTCLFVVVGPKSNQVMRDLNLGDL 224
+V + TE + + ++ Q I + L + GPK+ V+ L
Sbjct: 124 EFYIVTNAGCAERDTEFFHDELQNGSTLDCQWKIIEGRSLLALQGPKAKDVLEPLLSKTA 183
Query: 225 VG----EAYGTHRH-YSV-NGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAV- 277
G E + RH +++ +G + + G E+GF + ++ A E LL+ +
Sbjct: 184 PGKDLKELFFGQRHEFALKDGSLVQIARGGYTGEDGFEISIANEKAVEFAEQLLANPVMK 243
Query: 278 PMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-W 312
P+G A + LR+ G G EL +EA L W
Sbjct: 244 PIGLAARDSLRLEAGMCLYGHELDESITPVEAALNW 279
>UNIPROTKB|F8W6P8 [details] [associations]
symbol:DMGDH "Dimethylglycine dehydrogenase, mitochondrial"
species:9606 "Homo sapiens" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006546 "glycine catabolic process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 EMBL:AC020937 EMBL:AC008502 GO:GO:0004047
GO:GO:0006546 EMBL:AC016559 HGNC:HGNC:24475 IPI:IPI00178676
ProteinModelPortal:F8W6P8 PRIDE:F8W6P8 Ensembl:ENST00000380311
UCSC:uc011ctf.1 ArrayExpress:F8W6P8 Bgee:F8W6P8 Uniprot:F8W6P8
Length = 573
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 56/225 (24%), Positives = 104/225 (46%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
VA DLS FG+ + G D I+ L + AN I + G + +TP R + ++H
Sbjct: 328 VAVTDLSPFGKFNIKGQDSIRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 385
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + V GP++ +V++ L
Sbjct: 386 -SPGEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKNITDELGVLGVAGPQARKVLQKLT 444
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ +++ +
Sbjct: 445 SEDLSDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAIMNAGQEE 504
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 505 GIDNFGTYAMNALRLEKAFRAWGLEMNCDTNPLEAGLEYFVKLNK 549
>UNIPROTKB|Q8TCC6 [details] [associations]
symbol:DMGDH "Dimethylglycine dehydrogenase, mitochondrial"
species:9606 "Homo sapiens" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006546 "glycine catabolic process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 EMBL:AC020937 EMBL:AC008502 GO:GO:0004047
GO:GO:0006546 EMBL:AC016559 UniGene:Hs.655653 HGNC:HGNC:24475
HOGENOM:HOG000251716 EMBL:BC022388 IPI:IPI00985114 SMR:Q8TCC6
STRING:Q8TCC6 Ensembl:ENST00000523732 HOVERGEN:HBG103457
Uniprot:Q8TCC6
Length = 613
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 56/225 (24%), Positives = 104/225 (46%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
VA DLS FG+ + G D I+ L + AN I + G + +TP R + ++H
Sbjct: 368 VAVTDLSPFGKFNIKGQDSIRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 425
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + V GP++ +V++ L
Sbjct: 426 -SPGEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKNITDELGVLGVAGPQARKVLQKLT 484
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ +++ +
Sbjct: 485 SEDLSDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAIMNAGQEE 544
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 545 GIDNFGTYAMNALRLEKAFRAWGLEMNCDTNPLEAGLEYFVKLNK 589
>UNIPROTKB|P49364 [details] [associations]
symbol:GDCST "Aminomethyltransferase, mitochondrial"
species:3888 "Pisum sativum" [GO:0005960 "glycine cleavage complex"
evidence=IDA] InterPro:IPR006222 InterPro:IPR006223 Pfam:PF01571
PIRSF:PIRSF006487 GO:GO:0005739 GO:GO:0008483 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 GO:GO:0005960
PANTHER:PTHR13847:SF5 TIGRFAMs:TIGR00528 EMBL:X74793 EMBL:Z25861
EMBL:AJ222771 PIR:S38370 PIR:S56661 ProteinModelPortal:P49364
SMR:P49364 IntAct:P49364 PRIDE:P49364 Uniprot:P49364
Length = 408
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 57/225 (25%), Positives = 96/225 (42%)
Query: 97 LDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID 156
L+ NG + D+SH + + G D + FL A+ L G G TVF ID
Sbjct: 73 LNCRQNG-SLFDVSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAID 131
Query: 157 IAHAW-IMKNAVILVVSPLTCSSITEMLNKYV--FFADKVEIQ-DITKQTCLFVVVGPKS 212
+ + + + LVV+ + +++ F A ++ I + L + GP +
Sbjct: 132 DSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLA 191
Query: 213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAG-SVWETL 271
V++ L DL +G R +NG + E+GF + + P+ G + + L
Sbjct: 192 APVLQHLTKEDLSKLYFGEFRVLDINGSQCFLTRTGYTGEDGFEISV-PSEHGVELAKAL 250
Query: 272 L--SQGAVPM-GSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-W 312
L S+G + + G A + LR+ G G +L +EAGL W
Sbjct: 251 LEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLEQHITPIEAGLTW 295
>UNIPROTKB|Q9UI17 [details] [associations]
symbol:DMGDH "Dimethylglycine dehydrogenase, mitochondrial"
species:9606 "Homo sapiens" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0006546 "glycine catabolic process"
evidence=IEA] [GO:0006579 "amino-acid betaine catabolic process"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IMP]
[GO:0019695 "choline metabolic process" evidence=NAS] [GO:0005759
"mitochondrial matrix" evidence=NAS] [GO:0047865 "dimethylglycine
dehydrogenase activity" evidence=IMP] [GO:0009055 "electron carrier
activity" evidence=NAS] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291 GO:GO:0009055
GO:GO:0050660 GO:GO:0005759 GO:GO:0019695 EMBL:AC020937
GO:GO:0006544 GO:GO:0006579 EMBL:AC008502 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 GO:GO:0005542
eggNOG:COG0665 EMBL:AF111858 EMBL:AK314736 IPI:IPI00296196
RefSeq:NP_037523.2 UniGene:Hs.655653 ProteinModelPortal:Q9UI17
SMR:Q9UI17 STRING:Q9UI17 PhosphoSite:Q9UI17 DMDM:296434575
PaxDb:Q9UI17 PRIDE:Q9UI17 DNASU:29958 Ensembl:ENST00000255189
GeneID:29958 KEGG:hsa:29958 UCSC:uc003kfs.3 CTD:29958
GeneCards:GC05M078293 H-InvDB:HIX0200737 HGNC:HGNC:24475
HPA:HPA036442 MIM:605849 MIM:605850 neXtProt:NX_Q9UI17
Orphanet:243343 PharmGKB:PA134947212 HOGENOM:HOG000251716
HOVERGEN:HBG081945 InParanoid:Q9UI17 KO:K00315 OMA:REVGKMI
OrthoDB:EOG466VK7 PhylomeDB:Q9UI17 GenomeRNAi:29958 NextBio:52675
ArrayExpress:Q9UI17 Bgee:Q9UI17 CleanEx:HS_DMGDH
Genevestigator:Q9UI17 GermOnline:ENSG00000132837 GO:GO:0047865
Uniprot:Q9UI17
Length = 866
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 56/225 (24%), Positives = 104/225 (46%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
VA DLS FG+ + G D I+ L + AN I + G + +TP R + ++H
Sbjct: 529 VAVTDLSPFGKFNIKGQDSIRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 586
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + V GP++ +V++ L
Sbjct: 587 -SPGEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKNITDELGVLGVAGPQARKVLQKLT 645
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ +++ +
Sbjct: 646 SEDLSDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAIMNAGQEE 705
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL + L+K
Sbjct: 706 GIDNFGTYAMNALRLEKAFRAWGLEMNCDTNPLEAGLEYFVKLNK 750
>WB|WBGene00017765 [details] [associations]
symbol:gcst-1 species:6239 "Caenorhabditis elegans"
[GO:0004047 "aminomethyltransferase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006546 "glycine
catabolic process" evidence=IEA] InterPro:IPR006222
InterPro:IPR006223 Pfam:PF01571 PIRSF:PIRSF006487 GO:GO:0005737
GO:GO:0008483 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 KO:K00605 PANTHER:PTHR13847:SF5 eggNOG:COG0404
HOGENOM:HOG000239380 OMA:KALYGGM TIGRFAMs:TIGR00528
GeneTree:ENSGT00510000047333 EMBL:FO080538 PIR:T25732
RefSeq:NP_504502.1 ProteinModelPortal:Q22968 SMR:Q22968
STRING:Q22968 PaxDb:Q22968 EnsemblMetazoa:F25B4.1.1
EnsemblMetazoa:F25B4.1.2 GeneID:178960 KEGG:cel:CELE_F25B4.1
UCSC:F25B4.1.1 CTD:178960 WormBase:F25B4.1 InParanoid:Q22968
NextBio:903294 Uniprot:Q22968
Length = 402
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 64/260 (24%), Positives = 116/260 (44%)
Query: 70 LLETVKSEGAKI---SGEGIVETFGNDG--EALDAADNGVAAVDLSHFGRIRVSGDDRIQ 124
L+ET K G K+ +G + + + E+ V+ D+SH + ++G DR+
Sbjct: 30 LIETHKKHGGKLVEFAGYDMPTQYADFSIKESTIHTRKHVSLFDVSHMLQTYITGKDRVA 89
Query: 125 FLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNA--VILVVSPLTC--SSIT 180
F+ + +TA+ + L+E G +VF D IMK + +V+ C +
Sbjct: 90 FIESLTTADVQGLQENSGTLSVFTNEKGGIKD--DLIIMKTDKDFLFLVTNAGCIEKDLP 147
Query: 181 EMLNKYVFFADK---VEIQDITKQTCLFVVVGPKSNQVMR---DLNLGDLVGEAYGTHRH 234
+ + K V+I+ + + L V GP+ +V++ D++L L +
Sbjct: 148 YLQENAAAWRSKGKDVKIETLDNRG-LVAVQGPEMAKVLQEGTDIDLSKLTFMKTTVGKV 206
Query: 235 YSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL-SQ-GAVPM-GSNAWEKLRIIK 291
+ ++G +T G E+G + + P A + E LL SQ G+V + G A + LR+
Sbjct: 207 FGIDGCRVT-RCGYT-GEDGVEISVDPTKAEQLVERLLASQAGSVKLAGLGARDALRLEA 264
Query: 292 GRPAPGKELTNEFNVLEAGL 311
G G ++ +EAGL
Sbjct: 265 GLCLYGSDIEENTTPIEAGL 284
>RGD|620453 [details] [associations]
symbol:Dmgdh "dimethylglycine dehydrogenase" species:10116
"Rattus norvegicus" [GO:0004047 "aminomethyltransferase activity"
evidence=IEA] [GO:0005542 "folic acid binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA;TAS] [GO:0006544
"glycine metabolic process" evidence=ISO] [GO:0006546 "glycine
catabolic process" evidence=IEA] [GO:0006579 "amino-acid betaine
catabolic process" evidence=IEA] [GO:0019695 "choline metabolic
process" evidence=TAS] [GO:0042426 "choline catabolic process"
evidence=TAS] [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA;ISO;IDA;TAS] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IDA;TAS] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291 RGD:620453
GO:GO:0005739 GO:GO:0050660 GO:GO:0042426 GO:GO:0006579
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
GO:GO:0005542 eggNOG:COG0665 HOGENOM:HOG000251716
HOVERGEN:HBG081945 OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:X55995
IPI:IPI00207941 PIR:S16133 UniGene:Rn.3646
ProteinModelPortal:Q63342 STRING:Q63342 PhosphoSite:Q63342
PRIDE:Q63342 UCSC:RGD:620453 InParanoid:Q63342
BioCyc:MetaCyc:MONOMER-16117 BRENDA:1.5.99.2 ArrayExpress:Q63342
Genevestigator:Q63342 GermOnline:ENSRNOG00000023588 Uniprot:Q63342
Length = 857
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 56/225 (24%), Positives = 101/225 (44%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
V +DLS FG+ + G D Q L + AN I + G + +TP R + ++H
Sbjct: 522 VGVIDLSPFGKFNIKGQDSTQLL-DHLCANV-IPKVGFTNISHMLTPRGRVYAELTVSHQ 579
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + V VEI++IT + + V GP + +V++ L
Sbjct: 580 -SPGEFLLITGSGSELHDLRWIEEAAVRGGYDVEIRNITDELGVLGVAGPYARRVLQKLT 638
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + ++ +P+T + E G+ L + +++E +++ +
Sbjct: 639 SEDLSDDVFKFLQTKSLKISDIPVTAIRISYTGELGWELYHRREDSAALYERIMNAGQEE 698
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL I L+K
Sbjct: 699 GIDNFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLDYFIKLNK 743
>UNIPROTKB|Q63342 [details] [associations]
symbol:Dmgdh "Dimethylglycine dehydrogenase, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0004047
"aminomethyltransferase activity" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291
RGD:620453 GO:GO:0005739 GO:GO:0050660 GO:GO:0042426 GO:GO:0006579
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
GO:GO:0005542 eggNOG:COG0665 HOGENOM:HOG000251716
HOVERGEN:HBG081945 OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:X55995
IPI:IPI00207941 PIR:S16133 UniGene:Rn.3646
ProteinModelPortal:Q63342 STRING:Q63342 PhosphoSite:Q63342
PRIDE:Q63342 UCSC:RGD:620453 InParanoid:Q63342
BioCyc:MetaCyc:MONOMER-16117 BRENDA:1.5.99.2 ArrayExpress:Q63342
Genevestigator:Q63342 GermOnline:ENSRNOG00000023588 Uniprot:Q63342
Length = 857
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 56/225 (24%), Positives = 101/225 (44%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
V +DLS FG+ + G D Q L + AN I + G + +TP R + ++H
Sbjct: 522 VGVIDLSPFGKFNIKGQDSTQLL-DHLCANV-IPKVGFTNISHMLTPRGRVYAELTVSHQ 579
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + V VEI++IT + + V GP + +V++ L
Sbjct: 580 -SPGEFLLITGSGSELHDLRWIEEAAVRGGYDVEIRNITDELGVLGVAGPYARRVLQKLT 638
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + ++ +P+T + E G+ L + +++E +++ +
Sbjct: 639 SEDLSDDVFKFLQTKSLKISDIPVTAIRISYTGELGWELYHRREDSAALYERIMNAGQEE 698
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL I L+K
Sbjct: 699 GIDNFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLDYFIKLNK 743
>UNIPROTKB|F1PK75 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0006546 "glycine catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 GeneTree:ENSGT00530000063120 EMBL:AAEX03002116
EMBL:AAEX03002117 EMBL:AAEX03002118 Ensembl:ENSCAFT00000014573
Uniprot:F1PK75
Length = 794
Score = 129 (50.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 54/225 (24%), Positives = 102/225 (45%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
V +DLS FG+ + G D ++ L + AN I + G + +TP R + ++H
Sbjct: 457 VGVIDLSPFGKFNIKGQDSVRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 514
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + + GP + +V++ L
Sbjct: 515 -TPGEFLLITGSGSELHDLRWIEEEAVNGGYDVEIKNITDELGVLGIAGPHARKVLQKLT 573
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ ++ +
Sbjct: 574 AEDLSDDVFKFLQTKSLKVSDIPVTAIRISYTGELGWELYHRREDSAALYDIVMDAGQEE 633
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL I L+K
Sbjct: 634 GIDNFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLDYFIKLNK 678
>UNIPROTKB|F1PKA8 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0006546 "glycine catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 OMA:REVGKMI GeneTree:ENSGT00530000063120
EMBL:AAEX03002116 EMBL:AAEX03002117 EMBL:AAEX03002118
Ensembl:ENSCAFT00000014548 Uniprot:F1PKA8
Length = 838
Score = 129 (50.5 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 54/225 (24%), Positives = 102/225 (45%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART---IDIAHA 160
V +DLS FG+ + G D ++ L + AN I + G + +TP R + ++H
Sbjct: 502 VGVIDLSPFGKFNIKGQDSVRLL-DHLFANV-IPKVGFTNISHMLTPKGRVYAELTVSHQ 559
Query: 161 WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220
+++ S + + + V VEI++IT + + + GP + +V++ L
Sbjct: 560 -TPGEFLLITGSGSELHDLRWIEEEAVNGGYDVEIKNITDELGVLGIAGPHARKVLQKLT 618
Query: 221 LGDLVGEAYG--THRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----Q 274
DL + + + V+ +P+T + E G+ L + ++++ ++ +
Sbjct: 619 AEDLSDDVFKFLQTKSLKVSDIPVTAIRISYTGELGWELYHRREDSAALYDIVMDAGQEE 678
Query: 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G G+ A LR+ K A G E+ + N LEAGL I L+K
Sbjct: 679 GIDNFGTYALNALRLEKAFRAWGSEMNCDTNPLEAGLDYFIKLNK 723
>ZFIN|ZDB-GENE-080227-8 [details] [associations]
symbol:dmgdh "dimethylglycine dehydrogenase"
species:7955 "Danio rerio" [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0006546 "glycine
catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 ZFIN:ZDB-GENE-080227-8
GO:GO:0005737 GO:GO:0016491 GO:GO:0004047 GO:GO:0006546
InterPro:IPR013977 Pfam:PF08669 eggNOG:COG0665 HOGENOM:HOG000251716
HOVERGEN:HBG081945 OrthoDB:EOG466VK7 EMBL:BC155630 IPI:IPI00511660
UniGene:Dr.5571 ProteinModelPortal:A9JRE6 STRING:A9JRE6
Uniprot:A9JRE6
Length = 875
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 55/224 (24%), Positives = 98/224 (43%)
Query: 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWI 162
V +DLS FG+++V+G D + L ++ AN + + GQ + +TP R ++
Sbjct: 540 VGVIDLSPFGKMKVTGADSERLL-DRLLAN-TLPKVGQTNISHMLTPRGRVYAELTVTHT 597
Query: 163 MKNAVILVV-SPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNL 221
+L+ S + + + V + ++T + + + GPK+ +++ L
Sbjct: 598 QPGEFLLITGSGSELHDLRWIEREAADGGYDVCVTNVTDEIGVLGIAGPKARTILQKLTS 657
Query: 222 GDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVP- 278
DL G + R + G + + E G+ L M +V++ L+ G
Sbjct: 658 ADLSESGFRFLQCRTIELAGATVQAIRISYTGELGWELYMDMRNMSAVYQALMEAGRDEN 717
Query: 279 ---MGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
G+ A LR+ KG A G E+ + N LEAGL I L+K
Sbjct: 718 IDDFGTYAMNSLRLEKGFRAWGAEMNCDTNPLEAGLDYFIKLNK 761
>TIGR_CMR|SPO_A0311 [details] [associations]
symbol:SPO_A0311 "FAD dependent
oxidoreductase/aminomethyl transferase" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 EMBL:CP000032 GenomeReviews:CP000032_GR
HOGENOM:HOG000251716 RefSeq:YP_165138.1 ProteinModelPortal:Q5LKS0
GeneID:3196955 KEGG:sil:SPOA0311 PATRIC:23381968 OMA:KLRCSPL
ProtClustDB:CLSK863205 Uniprot:Q5LKS0
Length = 799
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 59/220 (26%), Positives = 88/220 (40%)
Query: 97 LDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART-I 155
+DA NG A +D S FG+I V G D FL+ A +I EG+ T +
Sbjct: 476 VDACRNGAAILDQSAFGKIMVQGPDACTFLNRLCAAQMDIA-EGRIAYTQILNARGGVES 534
Query: 156 DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAD-KVEIQDITKQTCLFVVVGPKSNQ 214
D+ +++V + +M D +VE D+T + G K+ +
Sbjct: 535 DLTVQRHGPETYLMIVG--AGEVVRDMKRMRETRGDFRVEFTDVTSGYAAIGLAGTKARE 592
Query: 215 VMR---DLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETL 271
V++ + + DL + G G + EEG+ L + A + E L
Sbjct: 593 VLQATTNTPVPDLKRFRFAPVEIGLARGW---AGRLSFTGEEGYELYVPSDMAMAAHEAL 649
Query: 272 LSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL 311
++ GA G A LRI G A G ELT EAGL
Sbjct: 650 VAAGATHAGLFASGSLRIESGFRAFGHELTPGTTPQEAGL 689
>TAIR|locus:2008900 [details] [associations]
symbol:AT1G11860 species:3702 "Arabidopsis thaliana"
[GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006546 "glycine catabolic process"
evidence=IEA;RCA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0048046
"apoplast" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0007389 "pattern specification process" evidence=RCA]
[GO:0008361 "regulation of cell size" evidence=RCA] [GO:0009658
"chloroplast organization" evidence=RCA] [GO:0009926 "auxin polar
transport" evidence=RCA] [GO:0010015 "root morphogenesis"
evidence=RCA] [GO:0010075 "regulation of meristem growth"
evidence=RCA] [GO:0016117 "carotenoid biosynthetic process"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0040007 "growth" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR006222
InterPro:IPR006223 Pfam:PF01571 PIRSF:PIRSF006487 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0046686 GO:GO:0009570
GO:GO:0008483 GO:GO:0016020 GO:GO:0048046 GO:GO:0009941
EMBL:AC002131 GO:GO:0009534 GO:GO:0022626 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 KO:K00605
PANTHER:PTHR13847:SF5 EMBL:AY125509 EMBL:BT006361 EMBL:Z26545
IPI:IPI00538278 PIR:H86252 RefSeq:NP_001184969.1 RefSeq:NP_172650.1
RefSeq:NP_849646.1 UniGene:At.47506 ProteinModelPortal:O65396
SMR:O65396 STRING:O65396 SWISS-2DPAGE:O65396 PaxDb:O65396
PRIDE:O65396 ProMEX:O65396 EnsemblPlants:AT1G11860.1
EnsemblPlants:AT1G11860.2 EnsemblPlants:AT1G11860.3 GeneID:837733
KEGG:ath:AT1G11860 GeneFarm:1742 TAIR:At1g11860 eggNOG:COG0404
HOGENOM:HOG000239380 InParanoid:O65396 OMA:KALYGGM PhylomeDB:O65396
ProtClustDB:PLN02319 Genevestigator:O65396 GermOnline:AT1G11860
TIGRFAMs:TIGR00528 Uniprot:O65396
Length = 408
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 52/224 (23%), Positives = 93/224 (41%)
Query: 97 LDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID 156
++ +NG + D++H + + G D + FL A+ L G G TVF ID
Sbjct: 73 VNCRENG-SLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAID 131
Query: 157 IAHAWIMKNAVILVVSPLTC--SSITEMLNKYVFFADKV-EIQ-DITKQTCLFVVVGPKS 212
+ + + I +V C + + F K ++ I + L + GP +
Sbjct: 132 DSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQGPLA 191
Query: 213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL 272
V++ L DL +G + +NG + E+GF + + A + + +L
Sbjct: 192 APVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTGEDGFEISVPDEHAVDLAKAIL 251
Query: 273 --SQGAVPM-GSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-W 312
S+G V + G A + LR+ G G ++ + +EAGL W
Sbjct: 252 EKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTW 295
>WB|WBGene00021355 [details] [associations]
symbol:Y37E3.17 species:6239 "Caenorhabditis elegans"
[GO:0005215 "transporter activity" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006546 "glycine catabolic process"
evidence=IEA] InterPro:IPR006076 InterPro:IPR006222 Pfam:PF01266
Pfam:PF01571 GO:GO:0005737 GO:GO:0016491 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 eggNOG:COG0665
GeneTree:ENSGT00530000063120 EMBL:FO081769 GeneID:171775
KEGG:cel:CELE_Y37E3.17 CTD:171775 RefSeq:NP_001021746.1
ProteinModelPortal:Q6AW03 SMR:Q6AW03 STRING:Q6AW03 PaxDb:Q6AW03
PRIDE:Q6AW03 EnsemblMetazoa:Y37E3.17b UCSC:Y37E3.17b
WormBase:Y37E3.17b HOGENOM:HOG000022206 InParanoid:Q6AW03
OMA:IWGKELT NextBio:872635 ArrayExpress:Q6AW03 Uniprot:Q6AW03
Length = 837
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00075
Identities = 55/231 (23%), Positives = 97/231 (41%)
Query: 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTID---IA 158
N +DLS G+I V G+D + L + + A+ +I G+ + +T + I
Sbjct: 502 NKCGVIDLSWKGKIEVKGNDA-EKLMDYAIAS-QIPALGKISSGLMLTRHGGILGPMMIF 559
Query: 159 HAWIMKNAVILVVSPLTCSSITEMLNKYVFFADK---VEIQDITKQTCLFVVVGPKSNQV 215
H ++A IL+ P S L + A+K V++ +++ +VGPKS +V
Sbjct: 560 HHDRQRSAFILLTEPERESRDLYWLRRAA--AEKKFDVQVSIVSEYLASLALVGPKSREV 617
Query: 216 MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEG---FSLLMSPAAAGSVWETLL 272
+ L D+ E + + P+ V + G + L + A ++ ++
Sbjct: 618 LSALTKSDVSDEGFPQKSTRMIRLGPVGVVCARSSTSTGQLSYELFHNRAETAKLYNAVM 677
Query: 273 S----QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDK 319
S G V G A +R+ G GKELT + N E G+ + +K
Sbjct: 678 SAGREHGIVNFGQAALNMMRLEHGYKIWGKELTLDTNPFECGIGGLVDFEK 728
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 321 321 0.00085 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 609 (65 KB)
Total size of DFA: 210 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.85u 0.09s 24.94t Elapsed: 00:00:01
Total cpu time: 24.85u 0.09s 24.94t Elapsed: 00:00:01
Start: Fri May 10 10:16:35 2013 End: Fri May 10 10:16:36 2013