Query 020817
Match_columns 321
No_of_seqs 268 out of 1705
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2844 Dimethylglycine dehydr 100.0 1.6E-74 3.6E-79 562.7 20.4 306 8-320 393-741 (856)
2 COG0404 GcvT Glycine cleavage 100.0 3.4E-64 7.3E-69 479.2 28.9 260 56-321 2-273 (379)
3 PLN02319 aminomethyltransferas 100.0 8.2E-60 1.8E-64 457.6 30.2 260 55-321 28-302 (404)
4 PRK13579 gcvT glycine cleavage 100.0 5.4E-58 1.2E-62 440.6 30.2 257 55-321 5-269 (370)
5 PRK12486 dmdA putative dimethy 100.0 8.3E-57 1.8E-61 431.6 28.3 251 58-320 10-270 (368)
6 PRK00389 gcvT glycine cleavage 100.0 1E-55 2.2E-60 423.4 30.5 256 59-321 2-263 (359)
7 TIGR00528 gcvT glycine cleavag 100.0 2.1E-55 4.5E-60 421.6 29.2 255 59-321 1-263 (361)
8 TIGR01372 soxA sarcosine oxida 100.0 2E-55 4.4E-60 467.5 30.2 259 57-321 594-874 (985)
9 KOG2770 Aminomethyl transferas 100.0 2.4E-47 5.2E-52 347.7 19.5 256 58-320 24-294 (401)
10 PF01571 GCV_T: Aminomethyltra 100.0 1.5E-45 3.2E-50 327.7 23.8 206 106-314 1-211 (211)
11 PRK09559 putative global regul 100.0 1.5E-37 3.2E-42 294.2 23.1 207 104-321 19-228 (327)
12 COG0354 Predicted aminomethylt 100.0 4E-28 8.7E-33 225.8 15.6 197 99-320 9-207 (305)
13 TIGR01375 soxG sarcosine oxida 99.9 1.3E-20 2.7E-25 159.7 15.3 115 158-276 35-151 (152)
14 KOG2929 Transcription factor, 99.8 2.3E-18 5E-23 156.6 8.8 194 104-320 30-240 (348)
15 PF04268 SoxG: Sarcosine oxida 99.3 8.3E-11 1.8E-15 99.0 13.2 110 158-274 33-144 (147)
16 TIGR03317 ygfZ_signature folat 99.2 1.7E-11 3.7E-16 89.3 3.6 39 283-321 2-42 (67)
17 COG4583 Sarcosine oxidase gamm 99.0 2.2E-08 4.7E-13 86.0 15.3 154 105-274 28-183 (189)
18 PF04268 SoxG: Sarcosine oxida 97.9 0.00025 5.4E-09 59.7 11.5 83 99-186 59-144 (147)
19 TIGR01375 soxG sarcosine oxida 97.5 0.0012 2.5E-08 55.8 10.6 79 103-186 68-149 (152)
20 COG4583 Sarcosine oxidase gamm 96.9 0.0054 1.2E-07 53.1 8.6 82 100-186 99-183 (189)
21 PF10396 TrmE_N: GTP-binding p 96.5 0.029 6.3E-07 45.0 9.5 49 110-161 12-60 (114)
22 PF08170 POPLD: POPLD (NUC188) 95.8 0.02 4.4E-07 44.2 5.3 49 254-302 1-49 (92)
23 PF10396 TrmE_N: GTP-binding p 95.1 0.25 5.5E-06 39.6 9.4 84 200-284 12-107 (114)
24 COG0486 ThdF Predicted GTPase 93.9 0.15 3.2E-06 50.3 6.5 49 111-160 18-66 (454)
25 PF01571 GCV_T: Aminomethyltra 93.1 0.78 1.7E-05 40.2 9.5 74 196-273 2-81 (211)
26 COG0404 GcvT Glycine cleavage 92.2 1.2 2.7E-05 43.2 10.2 79 191-273 46-130 (379)
27 PLN02319 aminomethyltransferas 91.9 1.8 3.8E-05 42.4 11.0 79 191-273 73-157 (404)
28 PRK00389 gcvT glycine cleavage 91.7 1.4 3.1E-05 42.1 10.1 79 192-274 43-127 (359)
29 TIGR00528 gcvT glycine cleavag 90.7 2.1 4.6E-05 41.1 10.1 78 192-273 42-125 (361)
30 PRK13579 gcvT glycine cleavage 89.7 3.6 7.8E-05 39.7 10.8 77 192-273 51-133 (370)
31 PRK12486 dmdA putative dimethy 88.9 3.5 7.6E-05 39.8 10.1 79 191-273 52-136 (368)
32 TIGR01372 soxA sarcosine oxida 86.0 6.1 0.00013 43.3 10.9 79 191-273 644-728 (985)
33 TIGR00450 mnmE_trmE_thdF tRNA 85.9 2 4.2E-05 42.7 6.5 50 110-160 7-56 (442)
34 PRK05291 trmE tRNA modificatio 85.4 1.6 3.5E-05 43.4 5.6 48 110-160 17-64 (449)
35 PRK05291 trmE tRNA modificatio 83.7 4.6 9.9E-05 40.1 8.0 79 200-279 17-105 (449)
36 TIGR00450 mnmE_trmE_thdF tRNA 81.8 6.2 0.00013 39.2 8.1 79 200-279 7-97 (442)
37 PRK09559 putative global regul 78.3 12 0.00026 35.5 8.5 77 193-274 19-101 (327)
38 COG0486 ThdF Predicted GTPase 77.0 13 0.00028 36.9 8.4 77 200-277 17-105 (454)
39 COG0354 Predicted aminomethylt 67.8 17 0.00037 34.3 6.7 80 193-274 14-96 (305)
40 PF06978 POP1: Ribonucleases P 64.5 6.7 0.00014 34.3 3.0 27 93-119 160-186 (187)
41 KOG2770 Aminomethyl transferas 58.4 37 0.0008 32.6 6.9 77 104-184 163-244 (401)
42 COG3323 Uncharacterized protei 45.7 19 0.0004 28.6 2.4 29 254-282 7-35 (109)
43 KOG2844 Dimethylglycine dehydr 43.3 1.4E+02 0.003 31.6 8.7 89 93-184 597-689 (856)
44 PF11834 DUF3354: Domain of un 32.7 87 0.0019 22.7 4.1 45 120-170 25-69 (69)
45 PF00673 Ribosomal_L5_C: ribos 29.8 28 0.0006 26.8 1.1 27 113-139 4-30 (95)
46 COG3603 Uncharacterized conser 24.1 3.9E+02 0.0085 21.7 8.0 82 162-275 39-123 (128)
47 PF09142 TruB_C: tRNA Pseudour 20.9 1.5E+02 0.0032 20.4 3.3 42 112-158 1-42 (56)
48 COG4044 Uncharacterized protei 20.5 4.4E+02 0.0094 23.6 6.8 64 192-263 33-99 (247)
49 KOG0688 Peptide chain release 20.4 4.3E+02 0.0094 25.4 7.2 100 114-220 64-169 (431)
No 1
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=562.68 Aligned_cols=306 Identities=24% Similarity=0.307 Sum_probs=292.1
Q ss_pred ceeeEEe-ecccc----cccccccCccCCcccccccccccccceeeeecCCC---CCCCCCCCCCCCCcchHHHHHHcCC
Q 020817 8 ATTHLIV-GSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA 79 (321)
Q Consensus 8 ~~~~~~~-~~~~~----~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~---~~r~~r~sp~~~~~~l~~~~~~~GA 79 (321)
-+||||| |+|+. +|++||+.+++|..|+++|++|+|+++|++.||++ +||++|+|| ||++|+++||
T Consensus 393 ~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGa 466 (856)
T KOG2844|consen 393 YLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGA 466 (856)
T ss_pred HHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhccc
Confidence 3799999 99988 99999999998889999999999999999999984 999999999 9999999999
Q ss_pred eEec---CC------------------------cceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcccc
Q 020817 80 KISG---EG------------------------IVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (321)
Q Consensus 80 ~f~~---~~------------------------~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~ 132 (321)
+|++ |+ .|.||+.++.||+|||++|+++|||+|+|+.|+|+||.+.||+|+++
T Consensus 467 v~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSa 546 (856)
T KOG2844|consen 467 VFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSA 546 (856)
T ss_pred chhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhc
Confidence 9986 44 35567779999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHHHcccC-CCCeEEEEecCcEEEEEEeCC
Q 020817 133 NFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGP 210 (321)
Q Consensus 133 dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~v~GP 210 (321)
||+. ++|..+||+|||++|++. |+++.++++++|+|+.++.++.+.+.||++++.. +.+|+|.|+|+++++|+|+||
T Consensus 547 nv~~-~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP 625 (856)
T KOG2844|consen 547 NVDV-PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGP 625 (856)
T ss_pred CCCC-CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCc
Confidence 9996 899999999999999999 9999999999999999999999999999999864 347999999999999999999
Q ss_pred ChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCC----cccCHHHH
Q 020817 211 KSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA----VPMGSNAW 284 (321)
Q Consensus 211 ~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~----~~~G~~A~ 284 (321)
+|+.+|+++++.|+++ |||++++++.++++.++++|++|+||+|||||+|.+++.+||++|++||+ +.+|++|+
T Consensus 626 ~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya~ 705 (856)
T KOG2844|consen 626 QSRKVLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYAL 705 (856)
T ss_pred hHHHHHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHHH
Confidence 9999999999999987 99999999999999999999999999999999999999999999999984 89999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 285 EKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 285 ~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
++|||||+|..||+|++++.||+|+||.+.|+||||
T Consensus 706 ~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p 741 (856)
T KOG2844|consen 706 RALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKP 741 (856)
T ss_pred HHHHHHHHHHhhccccCCCCChhhccceeEEecCCC
Confidence 999999999999999999999999999999999997
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-64 Score=479.18 Aligned_cols=260 Identities=25% Similarity=0.374 Sum_probs=244.4
Q ss_pred CCCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccc
Q 020817 56 VLPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQST 131 (321)
Q Consensus 56 ~r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~-~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t 131 (321)
.|++|+|| ||++|+++||+|++ |.+|.+|. ++.+||.|+|++||+||+|||++++|+||||.+|||++++
T Consensus 2 ~~~~r~tp------l~~~~~~~GA~~~~~~Gw~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~GpdA~~~L~~l~~ 75 (379)
T COG0404 2 ARPLKRTP------LYDRHKALGAVFGEFGGWEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVSGPDAAAFLQRLLT 75 (379)
T ss_pred Cccccccc------hHHHHHhcCCEEEeeCCEecceecCccHHHHHHHHHhcCceEeccCceEEEEECCCHHHHHHHHcc
Confidence 58999999 99999999999875 78999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcEEEEEEeCCCCcEEEE-EEEEEeCCeEEEEeCCcchHHHHHHHHHccc-CCCCeEEEEecCcEEEEEEeC
Q 020817 132 ANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKNAVILVVSPLTCSSITEMLNKYVF-FADKVEIQDITKQTCLFVVVG 209 (321)
Q Consensus 132 ~dv~~l~~G~~~~t~~ln~kG~i~d~-~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~t~~~~~l~v~G 209 (321)
||++++++|+++||+|||++|+|+|+ ++.++.+|+|+|++++...+++++||+++.. ...+|+++++|+++++|+|||
T Consensus 76 ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t~~~~~lalqG 155 (379)
T COG0404 76 NDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAGPDLDVTLTSVTEDLAVLALQG 155 (379)
T ss_pred cccCcCCCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhccCCcceEEeeccccEEEEEEEC
Confidence 99999999999999999999999955 4555899999999999999999999998543 134799999999999999999
Q ss_pred CChHHHHhhcccCCC-CCCCCcceEEEEECCe-eEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC----CcccCHHH
Q 020817 210 PKSNQVMRDLNLGDL-VGEAYGTHRHYSVNGM-PITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNA 283 (321)
Q Consensus 210 P~a~~vL~~l~~~dl-~~~~~~~~~~~~i~g~-~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~A 283 (321)
|+|+++|+++...++ .++||++++++.+.+. +|++.|+||+||+||||+||.+++..||++|+++| ++|+|+.|
T Consensus 156 PkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~aL~~aG~~~g~~P~Gl~A 235 (379)
T COG0404 156 PKAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDALLEAGEKFGVKPCGLGA 235 (379)
T ss_pred cCHHHHHHHhccccccccCCceEEEEEEecCCceEEEEeccccCCCeEEEEecHHHHHHHHHHHHHhhhhcCceEeecch
Confidence 999999999988774 7799999999998877 79999999999999999999999999999999994 79999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS 321 (321)
Q Consensus 284 ~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~ 321 (321)
+++|||||||+.||+|++++++|+|+||+|+|+++|+|
T Consensus 236 ~dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k~d 273 (379)
T COG0404 236 RDTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLDKDD 273 (379)
T ss_pred hhHhhhhcCccccccccCCCCCHhhcCcceEecCCCcC
Confidence 99999999999999999999999999999999999965
No 3
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=8.2e-60 Score=457.63 Aligned_cols=260 Identities=20% Similarity=0.271 Sum_probs=241.8
Q ss_pred CCCCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcc
Q 020817 55 AVLPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (321)
Q Consensus 55 ~~r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~-~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~ 130 (321)
..||+|+|| ||++|+++||+|++ |++|.+|+ .+.+||+|||++|+++|+|++++|+|+|+||.+|||+++
T Consensus 28 ~~r~~r~tp------l~~~~~~~Ga~~~~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~DlS~~~~i~V~G~Da~~fLq~l~ 101 (404)
T PLN02319 28 SEANLKKTA------LYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLV 101 (404)
T ss_pred CCCCcccCC------cHHHHHHCCCEEEEECCEehhhhcCccHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHhhhc
Confidence 679999999 99999999999874 77999997 589999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEEEeCCCCcEEEEEEEE-EeCCeEEEEeCCcchHHHHHHHHHcccCC----CCeEEEEecCcEEEE
Q 020817 131 TANFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFA----DKVEIQDITKQTCLF 205 (321)
Q Consensus 131 t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~-~~~d~~~L~~~~~~~~~~~~~L~~~~~~~----~~V~i~d~t~~~~~l 205 (321)
||||..+++|+++||++||++|+|+++++++ +++|+|||+++++..+.+++||++|+.+. .+|++ ++++++++|
T Consensus 102 t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~~~~~~~l 180 (404)
T PLN02319 102 VADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSW-HVHDERSLL 180 (404)
T ss_pred ccccCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEE-EEcCCeEEE
Confidence 9999999999999999999999999655554 66999999999999999999999998532 25776 568899999
Q ss_pred EEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC---CcccCHH
Q 020817 206 VVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG---AVPMGSN 282 (321)
Q Consensus 206 ~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG---~~~~G~~ 282 (321)
+|+||+|+++|+++.+.+++++||+.++.+.+++.++++.|.+|+||+||||++|.+.+.+||+.|+++| +.++|..
T Consensus 181 ~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~~v~i~R~g~tGE~G~El~~p~~~a~~l~~~L~~aG~~g~~~~G~~ 260 (404)
T PLN02319 181 ALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKSEGKVRLTGLG 260 (404)
T ss_pred EEECccHHHHHHHhcccchhhCCCceEEEEEECCeeEEEEEeeecCCCeEEEEEcHHHHHHHHHHHHhCcccCcEecchh
Confidence 9999999999999988889899999999999999999999999999999999999999999999999986 7899999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcchhhcCCccccc---CCCCC
Q 020817 283 AWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSIS---LDKGS 321 (321)
Q Consensus 283 A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~---f~KG~ 321 (321)
||++||||+|+|.||+|++++++|+|+||+++|+ |+||+
T Consensus 261 a~d~lRiEaG~p~~g~dl~~~~~P~EagL~~~v~~~~~~Kg~ 302 (404)
T PLN02319 261 ARDSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAEGG 302 (404)
T ss_pred HhhHHHhhcCccccCCcCCCCCCHHHCCccceecccccCCCC
Confidence 9999999999999999999999999999999887 67875
No 4
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=5.4e-58 Score=440.61 Aligned_cols=257 Identities=22% Similarity=0.298 Sum_probs=240.3
Q ss_pred CCCCCCCCCCCCCcchHHHHHHcCCeEe---cCCcceeeC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcc
Q 020817 55 AVLPFDLSPPPIDHDLLETVKSEGAKIS---GEGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQS 130 (321)
Q Consensus 55 ~~r~~r~sp~~~~~~l~~~~~~~GA~f~---~~~~p~~f~-~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~ 130 (321)
.+||+|+|| ||++|+++||+|+ +|++|.+|+ ++.+||+|+|++|+++|+|++++|+|+|+||.+|||+|+
T Consensus 5 ~~~~~r~~p------l~~~~~~~ga~~~~~~g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~G~Da~~fLq~~~ 78 (370)
T PRK13579 5 DTSPLKTLP------LHALHLAAGARMVPFAGYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVSGKDAAAALERLV 78 (370)
T ss_pred CCCccccCc------cHHHHHHCCCEEEEECCeecccccCccHHHHHHHHHhccEEEECCCcEEEEEECCCHHHHHHHhc
Confidence 579999999 9999999999987 478999997 699999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCC
Q 020817 131 TANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGP 210 (321)
Q Consensus 131 t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP 210 (321)
||||.++++|+++|+++||+||+|+++++++..+|+|||+++++..+.+++||++++. .+|+|+|++ ++++++|+||
T Consensus 79 tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~d~~~L~~~~~~~~~~~~~l~~~~~--~~V~i~d~~-~~~~l~l~GP 155 (370)
T PRK13579 79 PVDILALKEGRQRYTFFTNEQGGILDDLMVTNLGDHLFLVVNAACKDADIAHLREHLS--DECEVNPLD-DRALLALQGP 155 (370)
T ss_pred cccCCCCCCCCEEEeEEECCCCeEEEeEEEEEECCeEEEEECcCCHHHHHHHHHHhCC--CCcEEEECC-CcEEEEEECc
Confidence 9999999999999999999999999776766658999999999999999999999985 389999986 6899999999
Q ss_pred ChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC-CCcccCHHHHHHHHH
Q 020817 211 KSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRI 289 (321)
Q Consensus 211 ~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~A~~slRi 289 (321)
+|+++|++++ .+++++||++++.+.+++.++++.|.+|+||+||||++|.+.+..+|+.|+++ |+.++|..||+++||
T Consensus 156 ~a~~il~~l~-~~~~~~~~~~~~~~~~~g~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l~~~~g~~~~G~~a~~~lRi 234 (370)
T PRK13579 156 EAEAVLADLG-PPVAALRFMDGFEPRLHGVDCFVSRSGYTGEDGFEISVPADAAEALAEALLADPRVEPIGLGARDSLRL 234 (370)
T ss_pred CHHHHHHHhh-hhhhcCCCceEEEEEECCeEEEEEEeeecCCCEEEEEEcHHHHHHHHHHHHccCCceEechhhhhHHHh
Confidence 9999999987 56777999999999999999999999999999999999999999999999998 678999999999999
Q ss_pred HhcCCCCCCCCCCCcchhhcCCcccccC---CCCC
Q 020817 290 IKGRPAPGKELTNEFNVLEAGLWNSISL---DKGS 321 (321)
Q Consensus 290 E~G~~~~g~d~~~~~~P~E~gL~~~V~f---~KG~ 321 (321)
|+|+|.||.|++++++|+|+||+++|++ +||+
T Consensus 235 E~G~p~~g~dl~~~~~P~E~gL~~~v~~~~~~Kgc 269 (370)
T PRK13579 235 EAGLCLYGHDIDTTTTPVEAALEWAIQKARREAGG 269 (370)
T ss_pred hcCCcccCCcCCCCCCHHHCCccceecCCCCCCCC
Confidence 9999999999999999999999988774 7775
No 5
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=8.3e-57 Score=431.57 Aligned_cols=251 Identities=14% Similarity=0.196 Sum_probs=225.9
Q ss_pred CCCCCCCCCCcchHHHHHHcCCeEe----cCCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccC
Q 020817 58 PFDLSPPPIDHDLLETVKSEGAKIS----GEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (321)
Q Consensus 58 ~~r~sp~~~~~~l~~~~~~~GA~f~----~~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~d 133 (321)
.+|+|| ||++|+++||+|. +|.+|.+|.++.+||+|+|++|+++|+|+|++|+|+|+||.+|||+++|||
T Consensus 10 ~~~~t~------l~~~h~~~ga~~~~~~~g~~~p~~~~~~~~E~~A~R~~~gl~D~S~~~~i~V~G~Da~~fL~~l~t~d 83 (368)
T PRK12486 10 RLRRTP------FSDGVEAAGVKAYTVYNHMLLPTVFESVEDDYAHLKEHVQVWDVAVERQVEIRGPDAARLVQMLTPRD 83 (368)
T ss_pred cccCCC------CHHHHHHCCCeEEecCCCeECccccCCHHHHHHHHHhcceEEEcCCcEEEEEECCCHHHHHHHhcccc
Confidence 378888 9999999999943 467999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEeCCCCcEEE-EEEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCCh
Q 020817 134 FEILREGQGCDTVFVTPTARTID-IAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212 (321)
Q Consensus 134 v~~l~~G~~~~t~~ln~kG~i~d-~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a 212 (321)
|.++++|+++||++||++|+|+| .++.++.+|+|+|+++.. ..+.||++++.. .++.+++.++++++++||||+|
T Consensus 84 i~~l~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~-~~~~v~~~~~~~~~l~lqGP~s 159 (368)
T PRK12486 84 LRGMKPGQCYYVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANG-RKLDVLVVEPDVSPLAVQGPKA 159 (368)
T ss_pred cccCCCCcEEEEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhh-cCCcEEEecCCeEEEEeECcCH
Confidence 99999999999999999999995 555667789999988654 467888887652 3466666778899999999999
Q ss_pred HHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEccc-CHHHHHHHHHhCCC----cccCHHHHHHH
Q 020817 213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPA-AAGSVWETLLSQGA----VPMGSNAWEKL 287 (321)
Q Consensus 213 ~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~-~a~~l~~~L~~aG~----~~~G~~A~~sl 287 (321)
+++|+++++.+++++||++++.+.++|.++++.|++|+||+||||+++.+ .+.++|++|+++|. .++|..++ +
T Consensus 160 ~~il~~l~~~~l~~~~~~~~~~~~i~g~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~~aG~~~~~~~~~~~~~--~ 237 (368)
T PRK12486 160 DALMARVFGEAIRDLRFFRFGYFDFEGTDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALFEAGKDLNVRAGCPNLI--E 237 (368)
T ss_pred HHHHHHHhcCChhhCCCceeEEEEECCcEEEEEeccccCCceEEEEeccHHHHHHHHHHHHhcccccCcccccChhH--h
Confidence 99999998888999999999999999999999999999999999999986 69999999999874 55665554 6
Q ss_pred HHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 288 RIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 288 RiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
|||+|+|.||+|++++++|+|+||+++|+|+|+
T Consensus 238 RlE~G~~~~g~D~~~~~~P~EagL~~~v~~~k~ 270 (368)
T PRK12486 238 RIEGGLLSYGNDMTRDNTPHECGLGRFCNTQTD 270 (368)
T ss_pred HHhcccccccccCCCCCChHHCCCceEEcCCCC
Confidence 999999999999999999999999999999996
No 6
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=1e-55 Score=423.45 Aligned_cols=256 Identities=24% Similarity=0.370 Sum_probs=240.7
Q ss_pred CCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCC
Q 020817 59 FDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (321)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~ 135 (321)
+|+|| ||++|.+.||+|++ |++|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+|+||||+
T Consensus 2 ~r~s~------l~~~~~~~ga~f~~~~g~~~p~~~~~~~~E~~a~r~~~~l~dls~~~~i~v~G~Da~~fLq~~~t~dv~ 75 (359)
T PRK00389 2 LKRTP------LYDLHVALGAKMVDFGGWEMPVQYGSIIEEHHAVRTDAGLFDVSHMGEVDVTGPDALAFLQYLLANDVS 75 (359)
T ss_pred CcCCc------cHHHHHHcCCEEEeECCeecchhccCHHHHHHHHHhCceEEECCCcEEEEEECCCHHHHHhhhcccccc
Confidence 68899 99999999999976 5589999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEeCCCCcEEEEEEEE-EeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHH
Q 020817 136 ILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (321)
Q Consensus 136 ~l~~G~~~~t~~ln~kG~i~d~~~~~-~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~ 214 (321)
.+++|+++|+++||+||+|+++++++ +.+|+|+|+++++..+.+++||++|+.+ .+|+|+|+++++++++|+||+|++
T Consensus 76 ~l~~g~~~~~~~l~~~G~i~~d~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~~-~~V~i~d~~~~~~~l~l~GP~a~~ 154 (359)
T PRK00389 76 KLKPGKAQYTCMLNEDGGVIDDLIVYKLSEDEYLLVVNAANREKDLAWIKSHAAG-FGVEVTDRSDDLAMIAVQGPKARE 154 (359)
T ss_pred cCCCCcEEEeEEECCCCCEEEeEEEEEecCCEEEEEECcccHHHHHHHHHhhCcc-CCEEEEECCCCEEEEEEECccHHH
Confidence 99999999999999999999555554 5689999999999999999999999974 489999999999999999999999
Q ss_pred HHhhcccCCCCCC-CCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcC
Q 020817 215 VMRDLNLGDLVGE-AYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGR 293 (321)
Q Consensus 215 vL~~l~~~dl~~~-~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~ 293 (321)
+|++++..+++.+ ||..++...+++.++++.|.+++||+||||++|.+.+..+|+.|+++|+.++|..+|+++|||+|+
T Consensus 155 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~~ag~~~~g~~a~~~lrie~G~ 234 (359)
T PRK00389 155 KLQKLTDADLSELKPFFGAQGAEVGGGDVLVARTGYTGEDGFEIYLPAEDAEALWDALLEAGVKPCGLGARDTLRLEAGM 234 (359)
T ss_pred HHHHhcccchhhccccceeeEEEECCeEEEEEeceecCCCeEEEEEchHHHHHHHHHHHHcCCeecchhHHhHHHHhcCC
Confidence 9999988778777 788888888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcchhhcCCcccccCC-CCC
Q 020817 294 PAPGKELTNEFNVLEAGLWNSISLD-KGS 321 (321)
Q Consensus 294 ~~~g~d~~~~~~P~E~gL~~~V~f~-KG~ 321 (321)
|.|+.|++++++|+|+||+++|||+ ||+
T Consensus 235 p~~~~d~~~~~~P~e~gl~~~v~~~~Kgc 263 (359)
T PRK00389 235 PLYGQDMDETITPLEAGLGWTVKLEEKRD 263 (359)
T ss_pred CccCccCCCCCChHHcCcccEecCCCCCC
Confidence 9999999999999999999999999 885
No 7
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=2.1e-55 Score=421.59 Aligned_cols=255 Identities=21% Similarity=0.318 Sum_probs=235.6
Q ss_pred CCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCC
Q 020817 59 FDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (321)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~ 135 (321)
+|+|| ||+++.+.||+|++ |++|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+|+||||.
T Consensus 1 ~r~sp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~~l~dls~~~~i~vsG~Da~~fLq~~~t~di~ 74 (361)
T TIGR00528 1 LKRTP------LYDLHTECGGKMVDFGGWEMPVQYGSQIDEHHAVRTDAGLFDVSHMGIVDLSGSRSLEFLQRLLPNDVA 74 (361)
T ss_pred CCCCc------chHHHHHCCCEEEEECCchhhhccCChHHHHHHHHhhCcEEECCCcEEEEEECCCHHHHHhHhcccccc
Confidence 47888 99999999999975 5699999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHH
Q 020817 136 ILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (321)
Q Consensus 136 ~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~ 214 (321)
.+++|++.|+++||+||+|++++++ ++.+|+|||+++++..+.+++||++|+. .+|+|+|+++++++|+|+||+|++
T Consensus 75 ~l~~g~~~~~~~l~~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~--~~v~i~~~t~~~~~l~l~GP~a~~ 152 (361)
T TIGR00528 75 ALTPGKAQYSVLLNPQGGVVDDLIIYYFGEDRFRLVVNAATREKDLSWITEHAE--PFGIEDTQSDDISLLAVQGPKAAT 152 (361)
T ss_pred cCCCCCEEEEEEECCCCeEEEEEEEEEecCCEEEEEECCccHHHHHHHHHHhCc--CCcEEEECcCCEEEEEeECcCHHH
Confidence 9999999999999999999965555 5678899999999999999999999963 389999999999999999999999
Q ss_pred HHhhcccCCCCCC-CCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC-CCcccCHHHHHHHHHHhc
Q 020817 215 VMRDLNLGDLVGE-AYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIKG 292 (321)
Q Consensus 215 vL~~l~~~dl~~~-~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~A~~slRiE~G 292 (321)
+|+++...++++. ||...+...+++.++.+.|.+|+||+||||++|.+.+.++|++|+++ |.+++|..||+++|||+|
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~~~gg~~~~g~~a~~~lRie~G 232 (361)
T TIGR00528 153 ILNPLQDQAVEGLKPFFFVQEADFSGRKAFIARTGYTGEDGYEIALPNEKAADFWRALVEAYGVKPCGLGARDTLRLEAG 232 (361)
T ss_pred HHHHhcccchhhcccccceeEEEECCceEEEEEcceeCCCeEEEEecHHHHHHHHHHHHhcCCcEEcchhhhhhhHhhcC
Confidence 9999987777664 45556678899999999999999999999999999999999999998 679999999999999999
Q ss_pred CCCCCCCCCCCcchhhcCCcccccCC--CCC
Q 020817 293 RPAPGKELTNEFNVLEAGLWNSISLD--KGS 321 (321)
Q Consensus 293 ~~~~g~d~~~~~~P~E~gL~~~V~f~--KG~ 321 (321)
+|.|+.|++++++|+|+||++.|+|+ ||+
T Consensus 233 ~p~~~~d~~~~~~P~E~gl~~~v~~~fkKgc 263 (361)
T TIGR00528 233 MNLYGQELDETITPLEAGLGWTIAWEPAKRD 263 (361)
T ss_pred CCccCccCCCCCChHHCCcccEEecCCCCCC
Confidence 99999999999999999999998875 775
No 8
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=2e-55 Score=467.49 Aligned_cols=259 Identities=20% Similarity=0.264 Sum_probs=241.1
Q ss_pred CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeC--------ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHH
Q 020817 57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFG--------NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125 (321)
Q Consensus 57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~--------~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~f 125 (321)
+|+|+|| ||++|+++||+|++ |++|.+|. .+.+||+|+|++|+++|+|++++|+|+|+||.+|
T Consensus 594 ~~~r~tp------l~~~~~~~GA~~~~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~G~DA~~f 667 (985)
T TIGR01372 594 DPARKTP------LHSWHLAHGAVFEDVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQGPDAAEF 667 (985)
T ss_pred cccccCc------cHHHHHHcCCEeeeeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEECcCHHHH
Confidence 4789999 99999999999875 77999996 4799999999999999999999999999999999
Q ss_pred HHHccccCCCCCCCCcEEEEEEeCCCCcEEEEE-EEEEeCCeEEEEeCCcchHHHHHHHHHcccC---CCCeEEEEecCc
Q 020817 126 LHNQSTANFEILREGQGCDTVFVTPTARTIDIA-HAWIMKNAVILVVSPLTCSSITEMLNKYVFF---ADKVEIQDITKQ 201 (321)
Q Consensus 126 Lq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~-~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~---~~~V~i~d~t~~ 201 (321)
||+++|||+..+++|+++||+|||++|+|+|++ +.++++|+|||++++...+.+++||++|+.. ..+|+|+|+|++
T Consensus 668 L~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~~~~~V~i~d~t~~ 747 (985)
T TIGR01372 668 LNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEWPELDVYLTSVTDQ 747 (985)
T ss_pred HhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhccCCCCEEEEECCCC
Confidence 999999999999999999999999999999655 5557899999999999999999999999841 237999999999
Q ss_pred EEEEEEeCCChHHHHhhccc-CCCC--CCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC---
Q 020817 202 TCLFVVVGPKSNQVMRDLNL-GDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG--- 275 (321)
Q Consensus 202 ~~~l~v~GP~a~~vL~~l~~-~dl~--~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG--- 275 (321)
+++|+|+||+|+++|++++. .+++ ++||+.++.+.+++.+++++|++|+||+||||++|.+++.+||++|+++|
T Consensus 748 ~a~i~l~GP~s~~vl~~l~~~~dl~~~~~~~~~~~~~~~~g~~~~i~R~~~tGE~GyEi~~p~~~~~~l~~~L~~aG~~~ 827 (985)
T TIGR01372 748 WATLAVSGPKARDLLAELVDGLDLSNEAFPFMAIKEGTLAGVPARLFRISFSGELAFEVNVPADYGEAVWEALMEAGQPF 827 (985)
T ss_pred EEEEEEECHhHHHHHHHhcCcccCccccCCCceeEEEEECCcEEEEEeccccCCceEEEEecHHHHHHHHHHHHhcchhc
Confidence 99999999999999999986 5664 38999999999999999999999999999999999999999999999986
Q ss_pred -CcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817 276 -AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS 321 (321)
Q Consensus 276 -~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~ 321 (321)
++|+|..||++||||+|+|.|++|++++++|+|+||+|+|||+||+
T Consensus 828 g~~p~G~~a~~~lRiE~G~~~~g~d~~~~~tP~E~gl~~~V~~~Kg~ 874 (985)
T TIGR01372 828 GITPYGTETMHVLRAEKGFIIVGQDTDGTVTPADLGMGWMVSKKKPD 874 (985)
T ss_pred CceEcchhhhhhhhhhcCccccCcccCCCCCHHHCCCcccccCCCCC
Confidence 5899999999999999999999999999999999999999999985
No 9
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=347.65 Aligned_cols=256 Identities=28% Similarity=0.403 Sum_probs=230.3
Q ss_pred CCCCCCCCCCcchHHHHHHcCCeE---ecCCcceeeCC--hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcccc
Q 020817 58 PFDLSPPPIDHDLLETVKSEGAKI---SGEGIVETFGN--DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (321)
Q Consensus 58 ~~r~sp~~~~~~l~~~~~~~GA~f---~~~~~p~~f~~--~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~ 132 (321)
.+++|| ||+.|.++|+.+ ++|.+|..|.+ +.+++..+|+++++||+|||..++|+|+|+.+||+.+++.
T Consensus 24 ~~~~T~------l~d~H~~~ggk~V~fag~smpvqy~d~s~~dshl~tr~n~~lfDVSHmlq~~v~G~d~v~fLes~tta 97 (401)
T KOG2770|consen 24 ELKRTP------LYDFHVKLGGKMVPFAGYSMPVQYKDQSIIDSHLHTRENVSLFDVSHMLQSRVSGKDRVAFLESLTTA 97 (401)
T ss_pred hcccCC------ChhhHhhcCCEEecccccccceeeccccchhhhhhhhhcceEEeehhheeeeecccchhHHhhhcccc
Confidence 355677 999999999985 56889999974 8899999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEeCCCCcEEEEEEEE-EeCCeEEEEeCCcchHHHHHHHHHcccC----CCCeEEEEecCcEEEEEE
Q 020817 133 NFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFF----ADKVEIQDITKQTCLFVV 207 (321)
Q Consensus 133 dv~~l~~G~~~~t~~ln~kG~i~d~~~~~-~~~d~~~L~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~~~~l~v 207 (321)
|+..|++|+.+++.|.||+|+++|+.+++ ..++++|+++++..++.++..++.++.. ..||+++-+. ..+.+++
T Consensus 98 d~~~L~~g~GtlsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~~a~ks~gkDv~~~~~~-~r~l~A~ 176 (401)
T KOG2770|consen 98 DFEGLPEGSGTLSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHFFAWKSKGKDVSWETLD-GRSLLAL 176 (401)
T ss_pred chhccCCCCceeEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHHHhhhhccceeeEEEec-ccchhhh
Confidence 99999999999999999999999888877 5677899999999999999999887652 1245555443 5689999
Q ss_pred eCCChHHHHhhccc--CCCCCCCCcceEEEEECCee-EEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC-CCcccCHHH
Q 020817 208 VGPKSNQVMRDLNL--GDLVGEAYGTHRHYSVNGMP-ITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNA 283 (321)
Q Consensus 208 ~GP~a~~vL~~l~~--~dl~~~~~~~~~~~~i~g~~-v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~A 283 (321)
|||.+..+|+++.. .||+.+||++++...+.|.+ |++.|.+|+||+||||-+|++.|..+|++|++. +++|+|+.|
T Consensus 177 Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~~G~~~~~vtr~gytgEDGfeisv~~~~Av~la~~LLa~~~vkp~Gl~A 256 (401)
T KOG2770|consen 177 QGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDFKGGPGCRVTRGGYTGEDGFEISVPPEGAVDLAETLLANPVVKPAGLGA 256 (401)
T ss_pred cChHHHHHHHHhhccccchhcccccceEEEEecCCCceEEeccccccCCceEEecCCchhHHHHHHHhhCCceeecccch
Confidence 99999999999987 89999999999999999887 999999999999999999999999999999998 679999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcchhhcCCcccc-cCCCC
Q 020817 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWNSI-SLDKG 320 (321)
Q Consensus 284 ~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V-~f~KG 320 (321)
|++||||+|.+.||+||+++++|.|+||.|.| +.+||
T Consensus 257 rDsLRLeaGKOGyg~did~~~tpvEa~L~W~i~krrR~ 294 (401)
T KOG2770|consen 257 RDSLRLEAGLCLYGSDIDEETTPVEAGLSWVIGKRRRG 294 (401)
T ss_pred hhhhhhhcCCcccCcccccccChhhheeeeeeeecccc
Confidence 99999999999999999999999999998765 33443
No 10
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=1.5e-45 Score=327.74 Aligned_cols=206 Identities=33% Similarity=0.519 Sum_probs=183.2
Q ss_pred EEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEE-EEEEEeCCeEEEEeCCcchHHHHHHHH
Q 020817 106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI-AHAWIMKNAVILVVSPLTCSSITEMLN 184 (321)
Q Consensus 106 l~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~-~~~~~~~d~~~L~~~~~~~~~~~~~L~ 184 (321)
|+|+|++++|+|+|+||.+|||+|+||||+++++|+++|+++||+||||+++ ++++..+++|+|+++++..+.+++||+
T Consensus 1 l~d~s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~ 80 (211)
T PF01571_consen 1 LFDLSHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLK 80 (211)
T ss_dssp EEE-TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHH
T ss_pred CCCCCCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999955 555566677999999999999999999
Q ss_pred HcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCH
Q 020817 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 185 ~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
+|+++ .+|+|+++++++++++|+||+|.++|+++.+.+++.++++++... +++ ++++.|.+++|++||||++|.+.+
T Consensus 81 ~~~~~-~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~r~~~~g~~g~~l~~~~~~~ 157 (211)
T PF01571_consen 81 KYILR-SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV-GDG-PVLVARTGRTGELGYELIVPAEEA 157 (211)
T ss_dssp HHHHH-SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE-ETT-EEEEESCBSSSSSEEEEEEEGGGH
T ss_pred Hhccc-cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee-cCc-eEEEEecccCCCCCEEEEeccchh
Confidence 99986 599999999999999999999999999999777778999998888 888 999999999999999999999999
Q ss_pred HHHHHHHHhCC----CcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCccc
Q 020817 265 GSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNS 314 (321)
Q Consensus 265 ~~l~~~L~~aG----~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~ 314 (321)
..+|++|+++| ++++|..+|+++|||+|+|.++.|++++++|+|+||+|+
T Consensus 158 ~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G~p~~~~d~~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 158 EALWDALLEAGKDFGVRPAGLEAWEALRIEAGIPLYGQDLDEEFLPQEANLDWA 211 (211)
T ss_dssp HHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT---TTTSSCTTS-TTTTTGGGG
T ss_pred HHHHHHHHHHHhccCceeccHHHHHHHHHhcCCcccccccCCCCCHHHcCCCcC
Confidence 99999998775 689999999999999999999999999999999999874
No 11
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=1.5e-37 Score=294.24 Aligned_cols=207 Identities=20% Similarity=0.221 Sum_probs=178.1
Q ss_pred cEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHHHHHH
Q 020817 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEML 183 (321)
Q Consensus 104 vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~~~~L 183 (321)
..++|++++++|+|+|+||.+|||+|+||||..+++|+++|+++||+||||+++++++..+++|+|+++++..+.+++||
T Consensus 19 ~~l~~L~~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~~~~~l~~~~~~~~~~~~~L 98 (327)
T PRK09559 19 LTLISLDDWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRGDGFAWIERRSVRENQLTEL 98 (327)
T ss_pred eEEEcCccceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeCCeEEEEeChhhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999998888888888899999999999999999
Q ss_pred HHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccC-CCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEccc
Q 020817 184 NKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPA 262 (321)
Q Consensus 184 ~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~-dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~ 262 (321)
++|+++. +|+|++ ++++++++++||+|.++++++... +....++. ..+.. .+.|.. .++.||||+++.+
T Consensus 99 ~ky~~~~-kV~i~~-~~~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~-----~~~~~--~~~~~~-~~~~g~ei~~~~~ 168 (327)
T PRK09559 99 KKYAVFS-KVTIAP-DDERVLLGVAGFQARAALANLFSELPDAEKPVV-----QEGAT--TLLWFE-HPAERFLLVTDEA 168 (327)
T ss_pred hhcccce-EEEEEe-CCcEEEEEEECccHHHHHHHhcccCCCcCcceE-----ecCCe--EEEEec-CCCCeEEEEechH
Confidence 9999864 899986 677999999999999999887542 12212222 12221 233333 2578999999999
Q ss_pred CHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCc--ccccCCCCC
Q 020817 263 AAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKGS 321 (321)
Q Consensus 263 ~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~--~~V~f~KG~ 321 (321)
.+..+|+.|.+. ..+++..+|+++|||+|+|.++.|+++.++|+|+||+ ++|||+||.
T Consensus 169 ~~~~l~~~L~~~-~~~~~~~~w~~lrIeaG~p~~g~e~~e~~~Pqe~nL~~l~~Vsf~KGC 228 (327)
T PRK09559 169 TANMLTEKLRGE-AQLNNSQQWLALDIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGC 228 (327)
T ss_pred HHHHHHHHhhhc-CccCCHHHHHHHHHHcCCcccccccccccCchhhChhhcCceeecCcc
Confidence 999999999873 4568889999999999999999999999999999998 699999984
No 12
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=99.96 E-value=4e-28 Score=225.77 Aligned_cols=197 Identities=24% Similarity=0.257 Sum_probs=161.5
Q ss_pred HHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHH
Q 020817 99 AADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSS 178 (321)
Q Consensus 99 a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~ 178 (321)
.-.+...++++++++.|+|+|+|+.+|||+|+||||..+..|+.+++++||+||||++++.++..+|.|+|.++.+..+.
T Consensus 9 ~~~~~~~l~~l~~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~d~~~l~~~~~~~~~ 88 (305)
T COG0354 9 SAETPLTLVLLSDRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRGDGLYLDTDKSVLEA 88 (305)
T ss_pred ccccccEEEecCCceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeCCeEEEEcchhhcHH
Confidence 34567899999999999999999999999999999999999999999999999999998899988899999999999999
Q ss_pred HHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEE
Q 020817 179 ITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLL 258 (321)
Q Consensus 179 ~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~ 258 (321)
.++||+||++++ +|+|.+.+ ..+++|.|+++...+...... +|..... ...+++.
T Consensus 89 ~l~~L~kY~~~s-kv~i~~~~--~~~i~v~~~~~~~~~~~~~~~----~~~~~~~------------------~~~~~l~ 143 (305)
T COG0354 89 LLKRLKKYALRS-KVTIAPSD--LVLIGVAGEEAAEALAVDFPA----LPKQWRA------------------AGRFLLD 143 (305)
T ss_pred HHHHHHhceecc-cceEecCC--ceeEEEeeccccchhhccccc----ccccccc------------------cccceec
Confidence 999999999986 89998765 799999999988777654321 2222111 1123344
Q ss_pred EcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCc--ccccCCCC
Q 020817 259 MSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKG 320 (321)
Q Consensus 259 ~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~--~~V~f~KG 320 (321)
.+......+.......+....+..+|+.+||++|+|..+.+++++++|+|+||+ .+|||+||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~lri~~G~p~~~~~~~~~~iPqevnl~~~~gISF~KG 207 (305)
T COG0354 144 LPVPRLLQLVPKLALPQALEASLDQWLALRIRAGIPGIDDATSEDFIPQEVNLDALGGISFKKG 207 (305)
T ss_pred cchhhhhhhhhhccccccccccHHHHHHHHHHcCCCcccchhccccChhhhCccccCcEeccCc
Confidence 443333334433333345667788999999999999999999999999999996 68999998
No 13
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.86 E-value=1.3e-20 Score=159.67 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=106.4
Q ss_pred EEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCC--CCCcceEEE
Q 020817 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHY 235 (321)
Q Consensus 158 ~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~--~~~~~~~~~ 235 (321)
+++++++|+|+|+++++..+.+++||++++. ..+|.|+|+|+++++|.|+||+|+++|++++..|+++ +|+++++.+
T Consensus 35 ~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~-~~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~ 113 (152)
T TIGR01375 35 SVLWLGPDEWLIIAPQPEGAVLMAALAAALG-PEPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRT 113 (152)
T ss_pred EEEEEcCCEEEEEcCccchHHHHHHHHHHhC-CCccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEE
Confidence 5788999999999999999999999999884 2259999999999999999999999999999888987 999999999
Q ss_pred EECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCC
Q 020817 236 SVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA 276 (321)
Q Consensus 236 ~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~ 276 (321)
.+++.+|++.|+ ||+||||++|.+++.+||+.|+++|.
T Consensus 114 ~i~~~~v~i~Rt---GE~GfEi~v~~s~a~~lw~~L~~ag~ 151 (152)
T TIGR01375 114 IFGKIAAVIWRT---GEDTFEIIVRRSFAESLWHWLVDASE 151 (152)
T ss_pred EEcCeEEEEEEc---CCCeEEEEEEhhHHHHHHHHHHHHhc
Confidence 999999999994 99999999999999999999999863
No 14
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription]
Probab=99.75 E-value=2.3e-18 Score=156.61 Aligned_cols=194 Identities=22% Similarity=0.222 Sum_probs=133.8
Q ss_pred cEEEeCCCceEEEEEcchHHHHHHHccccCCCC--------CCCCcEEEEEEeCCCCcEEEEEEEE-Ee----CCeEEEE
Q 020817 104 VAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEI--------LREGQGCDTVFVTPTARTIDIAHAW-IM----KNAVILV 170 (321)
Q Consensus 104 vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~--------l~~G~~~~t~~ln~kG~i~d~~~~~-~~----~d~~~L~ 170 (321)
-.++-++++..|+|+|+|+.+|||+|+||||.. .......|++|||.|||++.++++| .. +++++|.
T Consensus 30 ~~~~~L~~RsliRv~GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~llE 109 (348)
T KOG2929|consen 30 FNLSLLESRSLIRVRGPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPELLLE 109 (348)
T ss_pred ceeeecCCceEEEEeCccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCceEEE
Confidence 356889999999999999999999999999986 1124568999999999999666666 33 3589999
Q ss_pred eCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeC-CChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCc
Q 020817 171 VSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVG-PKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNV 249 (321)
Q Consensus 171 ~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~G-P~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~ 249 (321)
|+.+....+..+|++|.++. +|+|+.+.+++..+.|.- |+... |...++- ....+...|...
T Consensus 110 ~d~~~~~~~~khl~~yrLr~-kv~v~~id~el~tw~v~~~p~~~~--------d~~~~~~--------~~~~~~~~rdpr 172 (348)
T KOG2929|consen 110 CDGSVVGDFLKHLQKYRLRR-KVEVEKIDHELKTWKVEVLPKNSI--------DANVFEE--------NVLNVLYNRDPR 172 (348)
T ss_pred ecCccchHHHHHHHHhhhhh-cceeeeCchhhceeeeeecccccc--------chhhcch--------hhhhhhhccCCc
Confidence 99999999999999999875 899998887777766652 21110 1100110 011122223222
Q ss_pred CCCCeEEEEEcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCC-CcchhhcCCc--ccccCCCC
Q 020817 250 ISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTN-EFNVLEAGLW--NSISLDKG 320 (321)
Q Consensus 250 ~Ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~-~~~P~E~gL~--~~V~f~KG 320 (321)
....||++. +.+.+.. +.+ +...-...-+..+|.++|++.-.+|+.+ ...|+|+|++ .+|||+||
T Consensus 173 ~s~~~~~~l-~~~f~~~----~~~-~~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~KG 240 (348)
T KOG2929|consen 173 FSGMGWRLL-PQDFAVP----TSE-QVSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFDKG 240 (348)
T ss_pred ccccccccc-ceeecCc----ccc-cccccchhHHHHHHHHcCcccchhhcCcccccceeccccccccccccCc
Confidence 223344433 1111110 001 1122233448999999999999999997 4699999987 59999998
No 15
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=99.27 E-value=8.3e-11 Score=98.97 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=87.1
Q ss_pred EEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCC--CCCCcceEEE
Q 020817 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHY 235 (321)
Q Consensus 158 ~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~--~~~~~~~~~~ 235 (321)
.++++++|+|+|+.+ ....+.+.|.+.+. ....+.|+++.++.|.|.||+++++|++.+..|++ .||.+.+..+
T Consensus 33 ~~~wlgPdewLl~~~--~~~~~~~~l~~~l~--~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T 108 (147)
T PF04268_consen 33 AVLWLGPDEWLLLSP--DGEDLAAALAAALG--GHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAART 108 (147)
T ss_dssp EEEEEETTEEEEEES--S-TCHHHHHHHHHT--TSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEE
T ss_pred eEEEEcCCEEEEEec--CcchHHHHHHHhhC--CCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEE
Confidence 588999999999883 23344666766552 36789999999999999999999999999999997 4899999999
Q ss_pred EECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC
Q 020817 236 SVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ 274 (321)
Q Consensus 236 ~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a 274 (321)
.+++..|.+.|. |+.+|+|+|+.+.+.++|+.|.++
T Consensus 109 ~~~~i~v~l~r~---~~~~f~l~v~rSfA~~l~~~L~~A 144 (147)
T PF04268_consen 109 SFAHISVILWRD---GEDGFRLLVRRSFAEYLWHWLEDA 144 (147)
T ss_dssp EETTEEEEEEEE---ETTEEEEEEBGGGHHHHHHHHHHH
T ss_pred eecCeEEEEEEc---CCCEEEEEEECchHHHHHHHHHHH
Confidence 999999999986 788999999999999999999864
No 16
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=99.18 E-value=1.7e-11 Score=89.34 Aligned_cols=39 Identities=44% Similarity=0.631 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcchhhcCCcc--cccCCCCC
Q 020817 283 AWEKLRIIKGRPAPGKELTNEFNVLEAGLWN--SISLDKGS 321 (321)
Q Consensus 283 A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~--~V~f~KG~ 321 (321)
+|++||||+|+|.||+|++++++|+|+||++ +|||+||+
T Consensus 2 ~~~~lRlE~g~~~~g~el~~~~~P~E~gl~~~~~v~~~Kg~ 42 (67)
T TIGR03317 2 AWELLRIAAGIPEGGAETSGEFLPQELNLDALGGVSFKKGC 42 (67)
T ss_pred HHHHHHHHcCCCccccccCCCCCHhHcCCCccCcEeCCCCC
Confidence 6999999999999999999999999999999 99999985
No 17
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=98.99 E-value=2.2e-08 Score=85.95 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=110.9
Q ss_pred EEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHHHHHHH
Q 020817 105 AAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLN 184 (321)
Q Consensus 105 gl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~~~~L~ 184 (321)
.+-..+....+.+.|+++..-|..-+-.-++. +++... ..| +..+.++++|+|+++.+.........-+.
T Consensus 28 ~l~~~p~~~~vl~~~~~~~~al~aal~~~~P~-~~~~~a------~sg---e~~v~wlgPDeW~Vi~~~~~~~~~~aa~A 97 (189)
T COG4583 28 VLRERPEGRIVLVAAEAADPALSAALGRVLPA-EPKGVA------SSG---ERSVLWLGPDEWLVISEGGEDAAMKAAFA 97 (189)
T ss_pred eeccCCCCceEEeecCccchhHHHHHhhhcCC-CCCCcc------ccC---ceEEEEeCCCeeEEEcCCCccHHHHHHHh
Confidence 44455556667777765544332222222232 222221 112 23578899999999988766554222222
Q ss_pred HcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCC--CCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEccc
Q 020817 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPA 262 (321)
Q Consensus 185 ~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~--~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~ 262 (321)
. .. . .....|++.....|.|.||+++++|++.+..||+ .||.+.+..+.++.+.+.+.|+ |++-|||+|-..
T Consensus 98 ~-~~-~-~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~~~~vvl~r~---g~d~fei~V~RS 171 (189)
T COG4583 98 S-LE-A-LASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFGKAAVVLTRT---GADTFEIEVWRS 171 (189)
T ss_pred h-cc-c-cceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeecceEEEEEee---cCCeEEEEeehh
Confidence 2 11 2 3488899999999999999999999999999985 4999999999899999999994 999999999999
Q ss_pred CHHHHHHHHHhC
Q 020817 263 AAGSVWETLLSQ 274 (321)
Q Consensus 263 ~a~~l~~~L~~a 274 (321)
.+.++|..|.++
T Consensus 172 FAe~~w~~L~~a 183 (189)
T COG4583 172 FAESLWHLLLDA 183 (189)
T ss_pred hHHHHHHHHHHh
Confidence 999999999875
No 18
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=97.86 E-value=0.00025 Score=59.65 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=63.2
Q ss_pred HHhhCcEEEeCCC-ceEEEEEcchHHHHHHHccccCCC--CCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcc
Q 020817 99 AADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFE--ILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLT 175 (321)
Q Consensus 99 a~r~~vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~--~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~ 175 (321)
++.....+.|+|+ +..|+|+|+.+.+.|.+.|.-|+. .+++|++..|.+ +++ ..++.+..++.|.|++..+.
T Consensus 59 ~l~~~a~v~d~Sd~~~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~----~~i-~v~l~r~~~~~f~l~v~rSf 133 (147)
T PF04268_consen 59 ALGGHASVVDVSDGRVWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSF----AHI-SVILWRDGEDGFRLLVRRSF 133 (147)
T ss_dssp HHTTSSEEEE-TTTB--EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEE----TTE-EEEEEEEETTEEEEEEBGGG
T ss_pred hhCCCeEEEecCCceEEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEee----cCe-EEEEEEcCCCEEEEEEECch
Confidence 4555789999999 579999999999999999999996 678999999988 333 34455678899999999999
Q ss_pred hHHHHHHHHHc
Q 020817 176 CSSITEMLNKY 186 (321)
Q Consensus 176 ~~~~~~~L~~~ 186 (321)
++++..||...
T Consensus 134 A~~l~~~L~~A 144 (147)
T PF04268_consen 134 AEYLWHWLEDA 144 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 19
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.51 E-value=0.0012 Score=55.81 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=66.8
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHHHccccCCCC--CCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHH
Q 020817 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (321)
Q Consensus 103 ~vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~~--l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~ 179 (321)
.+.+.|.|. ++.|.|+||.|.+.|+.++.-|+.. ++.+++..+.+ +++ ...+.|.+++.|-|.++.+.+.++
T Consensus 68 ~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i----~~~-~v~i~RtGE~GfEi~v~~s~a~~l 142 (152)
T TIGR01375 68 PHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGRRTIF----GKI-AAVIWRTGEDTFEIIVRRSFAESL 142 (152)
T ss_pred ccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEEEEEE----cCe-EEEEEEcCCCeEEEEEEhhHHHHH
Confidence 589999888 8999999999999999998888887 88899887776 222 345666788999999999999999
Q ss_pred HHHHHHc
Q 020817 180 TEMLNKY 186 (321)
Q Consensus 180 ~~~L~~~ 186 (321)
+++|.+.
T Consensus 143 w~~L~~a 149 (152)
T TIGR01375 143 WHWLVDA 149 (152)
T ss_pred HHHHHHH
Confidence 9999764
No 20
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0054 Score=53.05 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=67.8
Q ss_pred HhhCcEEEeCCCc-eEEEEEcchHHHHHHHccccCC--CCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcch
Q 020817 100 ADNGVAAVDLSHF-GRIRVSGDDRIQFLHNQSTANF--EILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTC 176 (321)
Q Consensus 100 ~r~~vgl~Dls~~-~~i~V~G~dA~~fLq~l~t~dv--~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~ 176 (321)
+-....++|+||. ..|+|+|+.|+..|+.-|+.|+ +.+++|++.-|.|= ++ ...+.+.++|.|-|++=.+-+
T Consensus 99 ~~~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~----~~-~vvl~r~g~d~fei~V~RSFA 173 (189)
T COG4583 99 LEALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFG----KA-AVVLTRTGADTFEIEVWRSFA 173 (189)
T ss_pred ccccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeec----ce-EEEEEeecCCeEEEEeehhhH
Confidence 3445588999994 8899999999999999999999 56789999877652 32 344667889999999999999
Q ss_pred HHHHHHHHHc
Q 020817 177 SSITEMLNKY 186 (321)
Q Consensus 177 ~~~~~~L~~~ 186 (321)
+++..+|..-
T Consensus 174 e~~w~~L~~a 183 (189)
T COG4583 174 ESLWHLLLDA 183 (189)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 21
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=96.52 E-value=0.029 Score=45.01 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAW 161 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~ 161 (321)
+.-+.|+|+|++|.+.++.++ .+.+++..+.|+.+.+.+|.++|..++.
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~---~~~~~~r~~~~~~~~~~~~~~iDe~lv~ 60 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLF---GKSPKPRRAYYGTIYDEDGEPIDEVLVL 60 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTE---SSSTTTTEEEEEEEECSSTCEEEEEEEE
T ss_pred ceEEEEEeEcHHHHHHHHHHh---CccccCcEEEEEEEEcCCCccccceeEE
Confidence 456899999999999999999 3334689999999999999999765543
No 22
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=95.84 E-value=0.02 Score=44.16 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=46.4
Q ss_pred eEEEEEcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCC
Q 020817 254 GFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTN 302 (321)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~ 302 (321)
||.|++|..-+..+|-+|...|+.+.|++.++.+-.|.|.+.+..|.-+
T Consensus 1 gw~lIlP~~w~~~fW~~L~~~g~r~~GL~e~~~~~~E~g~~~FP~DyPd 49 (92)
T PF08170_consen 1 GWDLILPWGWGMPFWIALVYRGARAGGLRERRQLAFESGIPSFPDDYPD 49 (92)
T ss_pred CeEEEEecHHHHHHHHHHHHhCCeeehHHHHHHHHHHcCCCcCCCCCCC
Confidence 7999999999999999999999999999999999999999999988764
No 23
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.10 E-value=0.25 Score=39.61 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=52.2
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE-CC-----eeEEEEe--cCcCCCCeEEEEEccc--CHHHHHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV-NG-----MPITVGV--GNVISEEGFSLLMSPA--AAGSVWE 269 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i-~g-----~~v~i~R--~~~~Ge~G~el~~~~~--~a~~l~~ 269 (321)
...++|-|.||+|.+++++++...+.. .......+.. .+ .-+...+ -|||||+-.||+|... ....+.+
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~~~~-r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~ 90 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKSPKP-RRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRILE 90 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSSTTT-TEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHHH
T ss_pred ceEEEEEeEcHHHHHHHHHHhCccccC-cEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHHH
Confidence 457899999999999999998433321 1111112211 11 1223333 4899999999999765 4467889
Q ss_pred HHHhCCCccc--CHHHH
Q 020817 270 TLLSQGAVPM--GSNAW 284 (321)
Q Consensus 270 ~L~~aG~~~~--G~~A~ 284 (321)
.|.+.|++++ |..+.
T Consensus 91 ~l~~~G~R~A~pGEFT~ 107 (114)
T PF10396_consen 91 ALLKAGARLAEPGEFTR 107 (114)
T ss_dssp HHHHTT-EE--TTHHHH
T ss_pred HHHHcCceEcCCchhhH
Confidence 9999897655 44433
No 24
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=93.88 E-value=0.15 Score=50.25 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=41.5
Q ss_pred CceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE
Q 020817 111 HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (321)
Q Consensus 111 ~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~ 160 (321)
.-+.++|+||+|...+|.++.. +...++-.+.|+.+.+++|.++|..++
T Consensus 18 aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lv 66 (454)
T COG0486 18 AIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLV 66 (454)
T ss_pred eEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeE
Confidence 3588999999999999999887 444467889999999999999976554
No 25
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=93.10 E-value=0.78 Score=40.19 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=55.3
Q ss_pred EEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC---eeEEEEecCcCCCCeEEEEEcccCHHHHHH
Q 020817 196 QDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAGSVWE 269 (321)
Q Consensus 196 ~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g---~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~ 269 (321)
-|+++ +++|.|.||.+.+.|+.++..|+..++.+.+...-+ .| ..+.+.|. ++..|.++++.+.+..+++
T Consensus 2 ~d~s~-~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~---~~~~~~l~~~~~~~~~~~~ 77 (211)
T PF01571_consen 2 FDLSH-RGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRL---GDDEFLLIVPASAADALLE 77 (211)
T ss_dssp EE-TT-SEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEE---ETTEEEEEECCTCHHHHHH
T ss_pred CCCCC-cEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEee---cCceEEEEecchhHHHHHH
Confidence 46655 799999999999999999988998777766665433 23 25667765 5556999999999999988
Q ss_pred HHHh
Q 020817 270 TLLS 273 (321)
Q Consensus 270 ~L~~ 273 (321)
.|..
T Consensus 78 ~L~~ 81 (211)
T PF01571_consen 78 WLKK 81 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 26
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=92.23 E-value=1.2 Score=43.20 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCH
Q 020817 191 DKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 191 ~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
.+|-|-|+|. ++.+.|.||.|.+.|+.++..|++.++.+.++-... +++ +..+.| .+|..|-+++....+
T Consensus 46 ~~aGlfDvSh-mgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r---l~~d~f~lv~~a~~~ 121 (379)
T COG0404 46 EAAGLFDVSH-MGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR---LGEDRFFLVTNAATA 121 (379)
T ss_pred hcCceEeccC-ceEEEEECCCHHHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEE---ecCCeEEEEeCccch
Confidence 3677889976 689999999999999999999999887666554332 232 567777 589999999999999
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
...++.|..
T Consensus 122 ~~~~~~l~~ 130 (379)
T COG0404 122 EKDLAWLER 130 (379)
T ss_pred HHHHHHHHH
Confidence 888888875
No 27
>PLN02319 aminomethyltransferase
Probab=91.86 E-value=1.8 Score=42.42 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC---eeEEEEecCcCCCCeEEEEEcccCH
Q 020817 191 DKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 191 ~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g---~~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
..|-+-|++. ++.|.|.||.+.+.|+.++..|+..++.+.+..+.+ .| .++.+.|. ++..|.|.++.+..
T Consensus 73 ~~~gl~DlS~-~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~---~~d~~~l~~~~~~~ 148 (404)
T PLN02319 73 QNGSLFDVSH-MCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKV---TDDHIYLVVNAGCR 148 (404)
T ss_pred hCeEEEECCC-cEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEEE---cCCEEEEEECCccH
Confidence 3688999986 799999999999999999999998776666554332 22 15677775 57889999998888
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
..+++.|..
T Consensus 149 ~~~~~~l~~ 157 (404)
T PLN02319 149 DKDLAHIEE 157 (404)
T ss_pred HHHHHHHHh
Confidence 887777754
No 28
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=91.75 E-value=1.4 Score=42.12 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=61.9
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC---eeEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g---~~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.|.+.|++. +.+|.|.||.+.+.|+.++..|+..++.+.+....+ .| .++.+.|. ++.+|.|.++...+.
T Consensus 43 ~~~l~dls~-~~~i~v~G~Da~~fLq~~~t~dv~~l~~g~~~~~~~l~~~G~i~~d~~v~r~---~~~~~ll~~~~~~~~ 118 (359)
T PRK00389 43 DAGLFDVSH-MGEVDVTGPDALAFLQYLLANDVSKLKPGKAQYTCMLNEDGGVIDDLIVYKL---SEDEYLLVVNAANRE 118 (359)
T ss_pred CceEEECCC-cEEEEEECCCHHHHHhhhcccccccCCCCcEEEeEEECCCCCEEEeEEEEEe---cCCEEEEEECcccHH
Confidence 688999985 899999999999999999988988776555444322 23 24666665 577899999999999
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+.+.|...
T Consensus 119 ~~~~~L~~~ 127 (359)
T PRK00389 119 KDLAWIKSH 127 (359)
T ss_pred HHHHHHHhh
Confidence 888888764
No 29
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=90.67 E-value=2.1 Score=41.07 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=60.0
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CCe---eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NGM---PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g~---~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-+-|++. +.++.|.||.+.+.|+.++..|++.++.+.+....+ .|. .+.+.|. ++..|.|.++.+.+.
T Consensus 42 ~~~l~dls~-~~~i~vsG~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~i~~d~~v~r~---~~d~~~l~~~~~~~~ 117 (361)
T TIGR00528 42 DAGLFDVSH-MGIVDLSGSRSLEFLQRLLPNDVAALTPGKAQYSVLLNPQGGVVDDLIIYYF---GEDRFRLVVNAATRE 117 (361)
T ss_pred hCcEEECCC-cEEEEEECCCHHHHHhHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEe---cCCEEEEEECCccHH
Confidence 678889985 899999999999999999988987766565554322 231 4566664 678899999998888
Q ss_pred HHHHHHHh
Q 020817 266 SVWETLLS 273 (321)
Q Consensus 266 ~l~~~L~~ 273 (321)
.+++.|..
T Consensus 118 ~~~~~l~~ 125 (361)
T TIGR00528 118 KDLSWITE 125 (361)
T ss_pred HHHHHHHH
Confidence 87777665
No 30
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=89.66 E-value=3.6 Score=39.72 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=59.9
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC---eeEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g---~~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-+-|++. ++.|.|.||.+.+.|+.++..|++.++.+.+....+ .| .++.+.|. +..|.|.++...+.
T Consensus 51 ~a~l~Dls~-~~~i~v~G~Da~~fLq~~~tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~----~d~~~L~~~~~~~~ 125 (370)
T PRK13579 51 HAGLFDVSH-MGQIEVSGKDAAAALERLVPVDILALKEGRQRYTFFTNEQGGILDDLMVTNL----GDHLFLVVNAACKD 125 (370)
T ss_pred ccEEEECCC-cEEEEEECCCHHHHHHHhccccCCCCCCCCEEEeEEECCCCeEEEeEEEEEE----CCeEEEEECcCCHH
Confidence 688899986 799999999999999999999998776665554332 23 25677775 45799999988888
Q ss_pred HHHHHHHh
Q 020817 266 SVWETLLS 273 (321)
Q Consensus 266 ~l~~~L~~ 273 (321)
.+++.|..
T Consensus 126 ~~~~~l~~ 133 (370)
T PRK13579 126 ADIAHLRE 133 (370)
T ss_pred HHHHHHHH
Confidence 88777765
No 31
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=88.88 E-value=3.5 Score=39.82 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCH
Q 020817 191 DKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 191 ~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
.+|-|-|+|. ++.+.|.||.+.+.|+.++..|++.++.++..-+-+ ++. ++.+.|. ++..|.|.+.....
T Consensus 52 ~~~gl~D~S~-~~~i~V~G~Da~~fL~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~r~---~ed~~~l~~~~~~~ 127 (368)
T PRK12486 52 EHVQVWDVAV-ERQVEIRGPDAARLVQMLTPRDLRGMKPGQCYYVPIVDETGGMLNDPVALKL---AEDRWWISIADSDL 127 (368)
T ss_pred hcceEEEcCC-cEEEEEECCCHHHHHHHhcccccccCCCCcEEEEEEEcCCCcEEeeEEEEEe---cCCEEEEEEcCccH
Confidence 3688999976 689999999999999999999998876666554332 232 5777775 57889888776665
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
...++.+..
T Consensus 128 ~~~l~~~~~ 136 (368)
T PRK12486 128 LLWVKGLAN 136 (368)
T ss_pred HHHHHHhhh
Confidence 555555543
No 32
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.04 E-value=6.1 Score=43.29 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CCe---eEEEEecCcCCCCeEEEEEcccCH
Q 020817 191 DKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NGM---PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 191 ~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g~---~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
..|-|-|+|. ++.|.|.||.+.+.|+.++..|++.++.+.++..-+ .|. ++.+.|. +|..|.|.++...+
T Consensus 644 ~~vgl~D~S~-~g~i~V~G~DA~~fL~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~---~ed~~~l~~~~~~~ 719 (985)
T TIGR01372 644 ESVGLFDAST-LGKIEVQGPDAAEFLNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSRL---AEDRFLMTTTTGGA 719 (985)
T ss_pred hceEEEECCC-cEEEEEECcCHHHHHhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEEE---eCCEEEEEeCCcCH
Confidence 3799999986 799999999999999999988998877666654432 221 4566665 68889999999988
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
..+++.|..
T Consensus 720 ~~~~~~L~~ 728 (985)
T TIGR01372 720 ARVLQHLEE 728 (985)
T ss_pred HHHHHHHHH
Confidence 888877754
No 33
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=85.87 E-value=2 Score=42.72 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=38.2
Q ss_pred CCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~ 160 (321)
+.-+.|+|+||+|.+.++.++..+.. .++-+..|+.+.+++|.++|..++
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~ 56 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELL 56 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEE
Confidence 44689999999999999999842221 145677899999988999976544
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=85.41 E-value=1.6 Score=43.38 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred CCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~ 160 (321)
+.-+.|+|+||+|...++.++...++ ++.++.|+.+.++ |.++|..++
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~iD~~l~ 64 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLP--KPRTAHYGHIRDP-GEVIDEVLV 64 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCC--CCcEEEEEEEecC-CcccceEEE
Confidence 45689999999999999999854443 6788999999885 888866553
No 35
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=83.65 E-value=4.6 Score=40.15 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=50.1
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCCc-ceEEEE-----ECCeeEEEEe--cCcCCCCeEEEEEccc--CHHHHHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYG-THRHYS-----VNGMPITVGV--GNVISEEGFSLLMSPA--AAGSVWE 269 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~-~~~~~~-----i~g~~v~i~R--~~~~Ge~G~el~~~~~--~a~~l~~ 269 (321)
...+++-|.||.|.+++++++...+. .|.. ....+. ++..-+...+ -|||||+=.||+|... ....+.+
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~ 95 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLP-KPRTAHYGHIRDPGEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILE 95 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCC-CCcEEEEEEEecCCcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHH
Confidence 45789999999999999999753221 1211 111111 1122222222 4899999999999765 4467888
Q ss_pred HHHhCCCccc
Q 020817 270 TLLSQGAVPM 279 (321)
Q Consensus 270 ~L~~aG~~~~ 279 (321)
.|.+.|++++
T Consensus 96 ~l~~~g~r~A 105 (449)
T PRK05291 96 LLLALGARLA 105 (449)
T ss_pred HHHHcCCEEc
Confidence 8888886443
No 36
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=81.77 E-value=6.2 Score=39.17 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=50.6
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC-----eeEEEEe--cCcCCCCeEEEEEccc--CHHHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG-----MPITVGV--GNVISEEGFSLLMSPA--AAGSV 267 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g-----~~v~i~R--~~~~Ge~G~el~~~~~--~a~~l 267 (321)
...+++-|.||+|.+++++++..... .+........+ .+ .-+...+ -|||||+=.||+|... ....+
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~i 85 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNT-ASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEI 85 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCC-CCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHH
Confidence 45789999999999999999743111 11111111111 12 2233333 4899999999999765 44678
Q ss_pred HHHHHhCCCccc
Q 020817 268 WETLLSQGAVPM 279 (321)
Q Consensus 268 ~~~L~~aG~~~~ 279 (321)
.+.|.+.|++++
T Consensus 86 l~~l~~~g~R~A 97 (442)
T TIGR00450 86 LQLCLKSGARLA 97 (442)
T ss_pred HHHHHHcCCeEc
Confidence 888888887544
No 37
>PRK09559 putative global regulator; Reviewed
Probab=78.30 E-value=12 Score=35.49 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEE---ECCe---eEEEEecCcCCCCeEEEEEcccCHHH
Q 020817 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYS---VNGM---PITVGVGNVISEEGFSLLMSPAAAGS 266 (321)
Q Consensus 193 V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~---i~g~---~v~i~R~~~~Ge~G~el~~~~~~a~~ 266 (321)
..+.+++ .+++|.|.||.+.+.|+.++..|+..++.+...... ..|. .+++.|. +.+|.++++.+.+..
T Consensus 19 ~~l~~L~-~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~----~~~~~l~~~~~~~~~ 93 (327)
T PRK09559 19 LTLISLD-DWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRR----GDGFAWIERRSVREN 93 (327)
T ss_pred eEEEcCc-cceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEe----CCeEEEEeChhhhHH
Confidence 5677775 489999999999999999988898877655544332 2332 4556654 345999999999999
Q ss_pred HHHHHHhC
Q 020817 267 VWETLLSQ 274 (321)
Q Consensus 267 l~~~L~~a 274 (321)
+.+.|...
T Consensus 94 ~~~~L~ky 101 (327)
T PRK09559 94 QLTELKKY 101 (327)
T ss_pred HHHHHhhc
Confidence 98888774
No 38
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=76.99 E-value=13 Score=36.91 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEE--E------EECCeeEEEEe--cCcCCCCeEEEEEcccCH--HHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRH--Y------SVNGMPITVGV--GNVISEEGFSLLMSPAAA--GSV 267 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~--~------~i~g~~v~i~R--~~~~Ge~G~el~~~~~~a--~~l 267 (321)
...+++-+.||+|.+++++++.. +...+...... + .++..-+...+ -|||||+--|+.|....+ ..+
T Consensus 17 ~aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~i 95 (454)
T COG0486 17 GAIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLI 95 (454)
T ss_pred ceEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHH
Confidence 45788899999999999999874 22222222111 1 11222233333 489999999999976544 568
Q ss_pred HHHHHhCCCc
Q 020817 268 WETLLSQGAV 277 (321)
Q Consensus 268 ~~~L~~aG~~ 277 (321)
.+.+++.|++
T Consensus 96 L~~~l~~GaR 105 (454)
T COG0486 96 LELLLKLGAR 105 (454)
T ss_pred HHHHHHcCCe
Confidence 8888888863
No 39
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=67.81 E-value=17 Score=34.29 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred eEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEE---EECCeeEEEEecCcCCCCeEEEEEcccCHHHHHH
Q 020817 193 VEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHY---SVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWE 269 (321)
Q Consensus 193 V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~---~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~ 269 (321)
..+.+.+ ++++|.|.|+.+...|+.+...|+.+++....... +..|.-....|+.. -+.++-+.++.+..+.+..
T Consensus 14 ~~l~~l~-~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~-~~d~~~l~~~~~~~~~~l~ 91 (305)
T COG0354 14 LTLVLLS-DRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYR-RGDGLYLDTDKSVLEALLK 91 (305)
T ss_pred cEEEecC-CceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEE-eCCeEEEEcchhhcHHHHH
Confidence 4555554 58999999999999999988788887765554432 22343222233322 2489999999999999998
Q ss_pred HHHhC
Q 020817 270 TLLSQ 274 (321)
Q Consensus 270 ~L~~a 274 (321)
.|...
T Consensus 92 ~L~kY 96 (305)
T COG0354 92 RLKKY 96 (305)
T ss_pred HHHhc
Confidence 88764
No 40
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=64.51 E-value=6.7 Score=34.30 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.8
Q ss_pred hHHHHHHHhhCcEEEeCCCceEEEEEc
Q 020817 93 DGEALDAADNGVAAVDLSHFGRIRVSG 119 (321)
Q Consensus 93 ~~~E~~a~r~~vgl~Dls~~~~i~V~G 119 (321)
...=|+|.+.++.+.|+|+++.|+|+|
T Consensus 160 ~R~~~Ra~~~~~~~~D~SY~~~i~l~g 186 (187)
T PF06978_consen 160 FRATYRASKHGCVLHDASYYSCIELEG 186 (187)
T ss_pred hhHHHHHhcCCEEEEecccceeEEEEe
Confidence 567778999999999999999999998
No 41
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism]
Probab=58.40 E-value=37 Score=32.57 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=56.8
Q ss_pred cEEEeCCCceEEEEEcchHHHHHHHccc--cCCCCCCCCcEEEEEEeCCCCcEEEEEEE---EEeCCeEEEEeCCcchHH
Q 020817 104 VAAVDLSHFGRIRVSGDDRIQFLHNQST--ANFEILREGQGCDTVFVTPTARTIDIAHA---WIMKNAVILVVSPLTCSS 178 (321)
Q Consensus 104 vgl~Dls~~~~i~V~G~dA~~fLq~l~t--~dv~~l~~G~~~~t~~ln~kG~i~d~~~~---~~~~d~~~L~~~~~~~~~ 178 (321)
|.+--+...+.+.++||.+.+.||.+++ .|+.+++=|+..+.-+ +|... +.+. +.+||.|=|.++...+..
T Consensus 163 v~~~~~~~r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~---~G~~~-~~vtr~gytgEDGfeisv~~~~Av~ 238 (401)
T KOG2770|consen 163 VSWETLDGRSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDF---KGGPG-CRVTRGGYTGEDGFEISVPPEGAVD 238 (401)
T ss_pred eeEEEecccchhhhcChHHHHHHHHhhccccchhcccccceEEEEe---cCCCc-eEEeccccccCCceEEecCCchhHH
Confidence 4443334789999999999999999999 8999888788765443 44431 1233 367899999999888877
Q ss_pred HHHHHH
Q 020817 179 ITEMLN 184 (321)
Q Consensus 179 ~~~~L~ 184 (321)
+.+.|-
T Consensus 239 la~~LL 244 (401)
T KOG2770|consen 239 LAETLL 244 (401)
T ss_pred HHHHHh
Confidence 777663
No 42
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.69 E-value=19 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.4
Q ss_pred eEEEEEcccCHHHHHHHHHhCCCcccCHH
Q 020817 254 GFSLLMSPAAAGSVWETLLSQGAVPMGSN 282 (321)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG~~~~G~~ 282 (321)
=|++++|.++...|-++|.++|+...|.+
T Consensus 7 K~~vyVP~~~~e~vr~aL~~aGag~iG~Y 35 (109)
T COG3323 7 KIEVYVPEEYVEQVRDALFEAGAGHIGNY 35 (109)
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCcceecc
Confidence 48999999999999999999998777743
No 43
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=43.32 E-value=1.4e+02 Score=31.56 Aligned_cols=89 Identities=9% Similarity=0.042 Sum_probs=61.5
Q ss_pred hHHHHHHHhhCcEEEeCCC-ceEEEEEcchHHHHHHHccccCCCC--CCCCcEEEEEEeCCCC-cEEEEEEEEEeCCeEE
Q 020817 93 DGEALDAADNGVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTA-RTIDIAHAWIMKNAVI 168 (321)
Q Consensus 93 ~~~E~~a~r~~vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~~--l~~G~~~~t~~ln~kG-~i~d~~~~~~~~d~~~ 168 (321)
+.+|..--+.+|-+.|++. .+.|.|.||-+++.||-++-.|+.. ++.-++. .++.-+ +|...-+.+.+|=.|.
T Consensus 597 i~k~~~~~~~~v~l~DvT~~~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k---~l~vg~~girairis~~GELG~~ 673 (856)
T KOG2844|consen 597 IKKEMPKGGSNVELKDVTDELGALSIIGPQSRKVLQELTDADLSDDHFPFLTTK---ELKVGNAGIRAIRISHTGELGWE 673 (856)
T ss_pred HHHHhhccCCceeeeechhhhceeeecCchHHHHHHhccCCCCCccccCcceee---eeeccccceEEEEEEeccccceE
Confidence 3444444477899999998 5999999999999999999999874 2222322 222211 3445556667777888
Q ss_pred EEeCCcchHHHHHHHH
Q 020817 169 LVVSPLTCSSITEMLN 184 (321)
Q Consensus 169 L~~~~~~~~~~~~~L~ 184 (321)
|-.+.....++.+.|-
T Consensus 674 Lyip~e~~~~vY~~im 689 (856)
T KOG2844|consen 674 LYIPNEDAVAVYRAIM 689 (856)
T ss_pred EEechHHHHHHHHHHH
Confidence 8888876666666553
No 44
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=32.72 E-value=87 Score=22.70 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=29.7
Q ss_pred chHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEE
Q 020817 120 DDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILV 170 (321)
Q Consensus 120 ~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~ 170 (321)
|+..+=|=.+-+..+. -. -+.++|++|.-+|+.-+.+++|.+|++
T Consensus 25 P~SleeLl~ia~~kfg-----~~-~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 25 PDSLEELLKIASEKFG-----FS-ATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CccHHHHHHHHHHHhC-----CC-ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 5554444444444433 22 577899999999887777888887763
No 45
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=29.81 E-value=28 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.2
Q ss_pred eEEEEEcchHHHHHHHccccCCCCCCC
Q 020817 113 GRIRVSGDDRIQFLHNQSTANFEILRE 139 (321)
Q Consensus 113 ~~i~V~G~dA~~fLq~l~t~dv~~l~~ 139 (321)
-++.++|+.+.+||++++..=+++++.
T Consensus 4 ~kvTLRg~~m~~FL~kli~~vlPrik~ 30 (95)
T PF00673_consen 4 CKVTLRGKKMYEFLDKLITIVLPRIKD 30 (95)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTTTTSSS
T ss_pred EEEEEccHHHHHHHHHHHHHhhhhccc
Confidence 378899999999999999986665444
No 46
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=3.9e+02 Score=21.67 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=49.3
Q ss_pred EeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHH---HhhcccCCCCCCCCcceEEEEEC
Q 020817 162 IMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV---MRDLNLGDLVGEAYGTHRHYSVN 238 (321)
Q Consensus 162 ~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~v---L~~l~~~dl~~~~~~~~~~~~i~ 238 (321)
..+|+.-|+|..+ .+ ++.|+++ ..|.++-++||-+-.+ |.++.. .|+ -+
T Consensus 39 ~t~eelsivc~~~-----------~v--p~~V~~~---~GW~~lk~~gpf~FgltGilasV~~-pLs-----------d~ 90 (128)
T COG3603 39 RTPEELSIVCLAD-----------RV--PDVVQIE---KGWSCLKFEGPFDFGLTGILASVSQ-PLS-----------DN 90 (128)
T ss_pred cCCceEEEEeecc-----------cC--CcceEec---CCeEEEEEeccccCCcchhhhhhhh-hHh-----------hC
Confidence 4456666666543 23 4467764 5899999999976542 332221 111 13
Q ss_pred CeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC
Q 020817 239 GMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG 275 (321)
Q Consensus 239 g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG 275 (321)
|+++.+.- .|.+. -|++..++...-.++|.++|
T Consensus 91 gigIFavS-tydtD---hiLVr~~dLekAv~~L~eaG 123 (128)
T COG3603 91 GIGIFAVS-TYDTD---HILVREEDLEKAVKALEEAG 123 (128)
T ss_pred CccEEEEE-eccCc---eEEEehhhHHHHHHHHHHcC
Confidence 44555443 35443 36677888888888888887
No 47
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=20.90 E-value=1.5e+02 Score=20.43 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=21.7
Q ss_pred ceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEE
Q 020817 112 FGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIA 158 (321)
Q Consensus 112 ~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~ 158 (321)
|-.++|+.+.|.++-++. -|+. .+..-..+.++++|+++...
T Consensus 1 fP~~~ls~~ea~~l~~Gr---~l~~--~~~~g~~aa~~pdG~lvAL~ 42 (56)
T PF09142_consen 1 FPVRELSAEEARDLRHGR---RLPA--AGPPGPVAAFAPDGRLVALL 42 (56)
T ss_dssp SEEEE--HHHHHHHHTT------B-------S-EEEE-TTS-EEEEE
T ss_pred CCceECCHHHHHHHhCCC---ccCC--CCCCceEEEECCCCcEEEEE
Confidence 446788888999998887 3331 13333456889999987543
No 48
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.55 E-value=4.4e+02 Score=23.61 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=38.4
Q ss_pred CeEEEEecCcEEEEEEeCCChHH---HHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccC
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQ---VMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAA 263 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~---vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~ 263 (321)
+++|.--..+|+.+.+.||.+.. ++.+-++. +..++ .+..-++.+.|.--.++.||-+++....
T Consensus 33 k~eisvt~~~w~~itleGed~e~sanli~eefge-i~sl~-------~~~~Gdv~vGrl~~l~~vgyg~yvdigV 99 (247)
T COG4044 33 KVEISVTKKQWAKITLEGEDEEVSANLIVEEFGE-IPSLS-------KVEEGDVYVGRLIDLGKVGYGAYVDIGV 99 (247)
T ss_pred EEEEEeecccceEEEEECccHHHHHHHHHHHhCC-CCccc-------cCCCCcEEEEEEeeeccceeEEEccccc
Confidence 45666667899999999998654 33222221 11111 1222356666665668889999887543
No 49
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=20.43 E-value=4.3e+02 Score=25.36 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred EEEEEcchHHHHHHHc-cccCCCCCCCCcEEEE-EEeCCCCcEEEEEEE---E-EeCCeEEEEeCCcchHHHHHHHHHcc
Q 020817 114 RIRVSGDDRIQFLHNQ-STANFEILREGQGCDT-VFVTPTARTIDIAHA---W-IMKNAVILVVSPLTCSSITEMLNKYV 187 (321)
Q Consensus 114 ~i~V~G~dA~~fLq~l-~t~dv~~l~~G~~~~t-~~ln~kG~i~d~~~~---~-~~~d~~~L~~~~~~~~~~~~~L~~~~ 187 (321)
++.|-|.- ....++| +-|.|| +.|.+.|+ .+.+++|+-.-..+- + --....+|.-+.-..+.+..-|..--
T Consensus 64 Rlsvl~Ai-tSaq~rLklynkvP--pnglvly~gti~tedgkekkv~idfepfkpintslyLcdNkfhte~l~~Ll~sd~ 140 (431)
T KOG0688|consen 64 RLSVLGAI-TSAQSRLKLYNKVP--PNGLVLYTGTIVTEDGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALKELLESDN 140 (431)
T ss_pred chhhhhhh-hhhhhhhHHhccCC--CCceEEEeeeeEccCCceeeeecccccccccccceEecCCccchHHHHHHHhhcc
Confidence 33344432 2334444 566776 67999999 899999994321111 1 11123334333333344444443321
Q ss_pred cCCCCeEEEEecCcEEEEEEeCCChHHHHhhcc
Q 020817 188 FFADKVEIQDITKQTCLFVVVGPKSNQVMRDLN 220 (321)
Q Consensus 188 ~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~ 220 (321)
-+ ..-+.| ..-++++..+++.+++|.+++
T Consensus 141 kf--gfivmD--g~~tlfgtl~gntrevLhkft 169 (431)
T KOG0688|consen 141 KF--GFIVMD--GNGTLFGTLQGNTREVLHKFT 169 (431)
T ss_pred cc--cEEEEc--CCceeEEEeccchHhhhheee
Confidence 11 233333 444788999999999999875
Done!