Query 020817
Match_columns 321
No_of_seqs 268 out of 1705
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj5_A N,N-dimethylglycine oxi 100.0 5.8E-63 2E-67 517.7 24.9 304 8-321 371-727 (830)
2 1vlo_A Aminomethyltransferase; 100.0 3.5E-61 1.2E-65 462.8 29.1 256 53-320 8-272 (381)
3 1yx2_A Aminomethyltransferase; 100.0 1.9E-60 6.6E-65 455.7 30.0 257 56-320 2-267 (365)
4 1wos_A Aminomethyltransferase; 100.0 6.8E-60 2.3E-64 451.8 32.9 255 59-320 1-263 (364)
5 3gir_A Aminomethyltransferase; 100.0 2.3E-60 7.9E-65 458.0 25.2 251 58-321 32-291 (393)
6 1wsr_A Aminomethyltransferase; 100.0 3.1E-59 1.1E-63 448.8 27.7 257 57-321 3-273 (375)
7 3tfi_A GCVT-like aminomethyltr 100.0 2.1E-59 7.3E-64 448.7 24.9 258 46-320 3-271 (369)
8 1v5v_A Aminomethyltransferase; 100.0 5.8E-58 2E-62 443.4 31.6 257 57-320 3-296 (401)
9 2gag_A Heterotetrameric sarcos 100.0 4.7E-57 1.6E-61 479.2 31.0 270 45-320 548-852 (965)
10 3ttg_A Putative aminomethyltra 100.0 6.2E-52 2.1E-56 395.1 23.4 223 95-321 27-259 (355)
11 1vly_A SPOT PR51, unknown prot 100.0 3E-45 1E-49 346.9 24.2 209 102-321 29-240 (338)
12 2gag_C Heterotetrameric sarcos 100.0 1.1E-29 3.9E-34 224.6 17.7 160 100-275 28-193 (210)
13 1x31_C Sarcosine oxidase gamma 100.0 1E-29 3.5E-34 224.4 13.2 160 100-275 26-191 (206)
14 2gag_C Heterotetrameric sarcos 97.4 0.0016 5.6E-08 56.7 11.8 80 103-187 111-193 (210)
15 1x31_C Sarcosine oxidase gamma 97.3 0.0016 5.6E-08 56.5 10.8 80 103-187 109-191 (206)
16 2bry_A NEDD9 interacting prote 96.7 4.9E-05 1.7E-09 74.7 -5.3 60 9-75 428-495 (497)
17 3gir_A Aminomethyltransferase; 94.6 0.26 8.9E-06 46.7 11.4 78 192-273 75-158 (393)
18 1yx2_A Aminomethyltransferase; 93.6 0.46 1.6E-05 44.3 10.8 79 192-274 46-130 (365)
19 1wos_A Aminomethyltransferase; 93.5 0.54 1.8E-05 43.8 11.1 79 192-274 42-126 (364)
20 1v5v_A Aminomethyltransferase; 93.3 0.57 1.9E-05 44.4 11.1 76 192-271 46-127 (401)
21 1wsr_A Aminomethyltransferase; 93.0 0.68 2.3E-05 43.3 11.1 77 192-272 47-129 (375)
22 1vly_A SPOT PR51, unknown prot 92.9 0.57 2E-05 43.3 10.2 78 192-274 30-113 (338)
23 1vlo_A Aminomethyltransferase; 92.7 0.65 2.2E-05 43.7 10.4 78 192-273 55-139 (381)
24 3ttg_A Putative aminomethyltra 91.1 0.99 3.4E-05 42.0 9.6 77 192-273 35-118 (355)
25 3geh_A MNME, tRNA modification 90.6 1.2 4.1E-05 43.0 9.9 76 110-185 22-109 (462)
26 2gag_A Heterotetrameric sarcos 89.4 2 7E-05 45.2 11.3 77 192-272 623-705 (965)
27 3gee_A MNME, tRNA modification 87.0 1.5 5.2E-05 42.5 7.8 51 110-161 28-83 (476)
28 3geh_A MNME, tRNA modification 86.0 4.6 0.00016 38.8 10.7 80 200-279 22-115 (462)
29 3tfi_A GCVT-like aminomethyltr 85.9 3.1 0.00011 38.8 9.2 79 102-186 141-223 (369)
30 1xzp_A Probable tRNA modificat 85.7 1.1 3.7E-05 43.6 6.0 49 110-161 46-95 (482)
31 3gee_A MNME, tRNA modification 84.4 5.5 0.00019 38.5 10.4 80 200-279 28-123 (476)
32 1pj5_A N,N-dimethylglycine oxi 82.2 3.8 0.00013 42.2 8.7 78 103-185 591-675 (830)
33 1xzp_A Probable tRNA modificat 57.1 59 0.002 31.2 10.1 77 201-279 47-135 (482)
34 1mji_A 50S ribosomal protein L 20.2 90 0.0031 25.9 3.8 25 113-137 90-114 (182)
No 1
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=5.8e-63 Score=517.65 Aligned_cols=304 Identities=20% Similarity=0.270 Sum_probs=276.2
Q ss_pred ceeeEEe-eccc----ccccccccCccCCcccccccccccccceeeeecCCC---CCCCCCCCCCCCCcchHHHHHHcCC
Q 020817 8 ATTHLIV-GSTS----RLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGA 79 (321)
Q Consensus 8 ~~~~~~~-~~~~----~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~---~~r~~r~sp~~~~~~l~~~~~~~GA 79 (321)
.+|+||+ |.+. .+|++||.+.+.+++|+++|..|+|++.|.++||++ ++|++|+|| ||++|+++||
T Consensus 371 ~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp------l~~~~~~~ga 444 (830)
T 1pj5_A 371 AMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSP------FHARHKELGA 444 (830)
T ss_dssp HHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCT------THHHHHHTTE
T ss_pred HHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCc------CHHHHHHcCC
Confidence 4577888 4442 389999998888999999999999999999999984 999999999 9999999999
Q ss_pred eEec---CCcceeeCC----------------------------hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHH
Q 020817 80 KISG---EGIVETFGN----------------------------DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHN 128 (321)
Q Consensus 80 ~f~~---~~~p~~f~~----------------------------~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~ 128 (321)
+|.+ |++|.+|.. +.+||+|+|++|+++|+|+|++|+|+|+||.+|||+
T Consensus 445 ~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~G~da~~fL~~ 524 (830)
T 1pj5_A 445 FFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQE 524 (830)
T ss_dssp EEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEESTTHHHHHHH
T ss_pred EEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEECcCHHHHHHH
Confidence 9864 779999975 779999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCC------CC-eEEEEecC
Q 020817 129 QSTANFEILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFA------DK-VEIQDITK 200 (321)
Q Consensus 129 l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~------~~-V~i~d~t~ 200 (321)
|+|||| .+++|+++|++|||++|+|+|++++ ++.++.|+| ++..+.+++||++++.+. .+ |+|+|+++
T Consensus 525 ~~t~dv-~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i~d~s~ 600 (830)
T 1pj5_A 525 LTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQVRDTTG 600 (830)
T ss_dssp HBSSCC-CSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEEEECGG
T ss_pred hccccc-cCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEEEEccC
Confidence 999999 8899999999999999999955554 567777877 344566999999998531 15 99999999
Q ss_pred cEEEEEEeCCChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC----
Q 020817 201 QTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ---- 274 (321)
Q Consensus 201 ~~~~l~v~GP~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a---- 274 (321)
++++|+||||+|+++|++++..|+++ +||++++.+.+++.++++.|++|+||+||||++|.+++..+|++|+++
T Consensus 601 ~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~~ag~~~ 680 (830)
T 1pj5_A 601 GTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPF 680 (830)
T ss_dssp GEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECCEEEEEEECcccCCCcEEEEecHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999998878865 899999999999999999999999999999999999999999999986
Q ss_pred CCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817 275 GAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS 321 (321)
Q Consensus 275 G~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~ 321 (321)
|+.|+|..||++||||+|+|.||+|++++++|+|+||+++|+|+||+
T Consensus 681 ~~~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~kg~ 727 (830)
T 1pj5_A 681 GVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKES 727 (830)
T ss_dssp TCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSC
T ss_pred CCEEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCCCCC
Confidence 47899999999999999999999999999999999999999999985
No 2
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=3.5e-61 Score=462.84 Aligned_cols=256 Identities=18% Similarity=0.250 Sum_probs=234.0
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHc
Q 020817 53 PTAVLPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQ 129 (321)
Q Consensus 53 ~~~~r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l 129 (321)
.+++|++|+|| ||++|+++||+|.+ |++|.+|+++.+||+|+|++++++|+|+|++|+|+|+||.+|||+|
T Consensus 8 ~~~~~~~~~tp------l~~~h~~~Ga~~~~~~g~~~p~~y~~~~~E~~avr~~~gl~DlS~~g~i~v~G~DA~~fLq~l 81 (381)
T 1vlo_A 8 DPALRAAQQTP------LYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYL 81 (381)
T ss_dssp --------CCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHH
T ss_pred CCCCCCcccCc------hHHHHHHcCCEEEeECCEEcccccCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHh
Confidence 35999999999 99999999999864 7799999999999999999999999999999999999999999999
Q ss_pred cccCCCCC-CCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEE
Q 020817 130 STANFEIL-REGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVV 207 (321)
Q Consensus 130 ~t~dv~~l-~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v 207 (321)
+||||+++ ++|+++|++|||++|+|+|++++ ++++|+|+|+++++..+.+++||++|+.+. +|+|+| ++++++|+|
T Consensus 82 ~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~-~V~i~d-s~~~~~lal 159 (381)
T 1vlo_A 82 LANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF-GIEITV-RDDLSMIAV 159 (381)
T ss_dssp BSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGGG-TCEEEE-CTTEEEEEE
T ss_pred ccccccccCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccCC-ceEEEE-CCCEEEEEE
Confidence 99999999 89999999999999999965555 567789999999999999999999998743 899999 999999999
Q ss_pred eCCChHHHHhhcc----cCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCCcccCHHH
Q 020817 208 VGPKSNQVMRDLN----LGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNA 283 (321)
Q Consensus 208 ~GP~a~~vL~~l~----~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~A 283 (321)
+||+|+++|++++ +.+++++||+++... + ++++.|++|+||+||||++|.+.+..+|++|+++|+.|+|..|
T Consensus 160 qGP~a~~~l~~l~~~~~~~~l~~~~~~~~~~~---g-~~~i~R~gytGe~G~ei~~~~~~a~~l~~~L~~~g~~p~G~~a 235 (381)
T 1vlo_A 160 QGPNAQAKAATLFNDAQRQAVEGMKPFFGVQA---G-DLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGA 235 (381)
T ss_dssp ESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEE---T-TEEEECCCSSSSCEEEEEEEHHHHHHHHHHHHHTTCEECCHHH
T ss_pred ECccHHHHHHHhhccccCCCcccCCcceeEEe---c-cEEEEecCCCCCCEEEEEEeHHHHHHHHHHHHhcCCcccCHHH
Confidence 9999999999987 567778998887765 5 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 284 WEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 284 ~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
|++||||+|+|.||+|++++++|+|+||+++|||+||
T Consensus 236 ~d~LRiEaG~p~~g~d~~~~~~P~EagL~~~V~~~Kg 272 (381)
T 1vlo_A 236 RDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPA 272 (381)
T ss_dssp HHHHHHHTTCCCBTTTBCTTSCGGGTTCGGGCCCCST
T ss_pred HHHHHHHcCCCcccccCCCCCChhhCCccceeECCCC
Confidence 9999999999999999999999999999999999998
No 3
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=1.9e-60 Score=455.68 Aligned_cols=257 Identities=22% Similarity=0.347 Sum_probs=241.7
Q ss_pred CCCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcccc
Q 020817 56 VLPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (321)
Q Consensus 56 ~r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~ 132 (321)
.|++|+|| ||++|+++||+|.+ |++|.+|+++.+||+|+|++++++|+|++++|+|+|+||.+|||+|+||
T Consensus 2 ~~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fLq~l~t~ 75 (365)
T 1yx2_A 2 NAMLKRTP------LFDLYKEYGGKTIDFGGWELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTN 75 (365)
T ss_dssp ---CBCCT------TGGGHHHHTCEEEEETTEEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CCccccCc------cHHHHHHcCCEEEeECCEEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEECCCHHHHHHHhccc
Confidence 47899999 99999999998764 7799999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCC
Q 020817 133 NFEILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPK 211 (321)
Q Consensus 133 dv~~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~ 211 (321)
||+.+++|+++||+|||++|+|++++++ +.++|+|||+++++..+.+++||++|+. .+|+|+|+++++++|+|+||+
T Consensus 76 dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~--~~V~i~d~s~~~~~lal~Gp~ 153 (365)
T 1yx2_A 76 DVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA--GDVQIDNQSDQIALLAVQGPK 153 (365)
T ss_dssp CGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC--SSCEEEECTTTEEEEEEESTT
T ss_pred ccccCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc--CCeEEEECcCCEEEEEEECcC
Confidence 9999999999999999999999966555 5668899999999999999999999986 489999999999999999999
Q ss_pred hHHHHhhcccCCCCCCCCcceE-EEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC----CcccCHHHHHH
Q 020817 212 SNQVMRDLNLGDLVGEAYGTHR-HYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEK 286 (321)
Q Consensus 212 a~~vL~~l~~~dl~~~~~~~~~-~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~A~~s 286 (321)
|+++|++++..+++++|++.+. .+.+++.++++.|.+|+||+||||++|.+.+..+|+.|+++| +.|+|..||++
T Consensus 154 a~~~L~~l~~~dl~~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~ 233 (365)
T 1yx2_A 154 AEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAYGLIPCGLGARDT 233 (365)
T ss_dssp HHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHGGGTEEEECHHHHHH
T ss_pred HHHHHHHhhCCChhhCCcceeEEEEEECCeEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHHhcchhcCceeCCHHHHHH
Confidence 9999999998888889999888 888999999999999999999999999999999999999987 68999999999
Q ss_pred HHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 287 LRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 287 lRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
||||+|+|.||+|++++++|+|+||+++|||+||
T Consensus 234 lRieaG~p~~g~d~~~~~~P~e~~l~~~V~~~Kg 267 (365)
T 1yx2_A 234 LRFEANIPLYGQELTRDITPIEAGIGFAVKHKKE 267 (365)
T ss_dssp HHHHTTCCCBTTTBSTTCCTTTTTCGGGCCTTCS
T ss_pred hHHhcCCCcCccccCCCCCHHHCCccceecCCCC
Confidence 9999999999999999999999999999999998
No 4
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=6.8e-60 Score=451.75 Aligned_cols=255 Identities=24% Similarity=0.332 Sum_probs=241.6
Q ss_pred CCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCC
Q 020817 59 FDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (321)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~ 135 (321)
+|+|| ||++|+++||+|.+ |++|.+|+++.+||+|+|++++++|+|++++|+|+|+||.+|||+|+||||+
T Consensus 1 ~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~da~~fL~~l~t~dv~ 74 (364)
T 1wos_A 1 MKRTP------LFEKHVELGAKMVDFAGWEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFS 74 (364)
T ss_dssp CBCCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCT
T ss_pred CCCCc------cHHHHHHCCCEEEeECCEEhhhhhCCHHHHHHHHHhCeEEEECCCcEEEEEECCCHHHHHHHhcccccc
Confidence 47788 99999999999875 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHH
Q 020817 136 ILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (321)
Q Consensus 136 ~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~ 214 (321)
.+++|+++||+|||++|+|++++++ +.++|+|+|+++++..+.+++||++|+.+. +|+|+|+++++++|+|+||+|++
T Consensus 75 ~l~~g~~~yt~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~-~V~i~d~s~~~~~l~l~Gp~a~~ 153 (364)
T 1wos_A 75 SLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNF-DVEVSNISDTTALIAFQGPKAQE 153 (364)
T ss_dssp TCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTTS-SCEEEECGGGEEEEEEESTTHHH
T ss_pred cCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccCC-CEEEEECcCCEEEEEEECcCHHH
Confidence 9999999999999999999965555 567889999999999999999999998743 89999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC----CcccCHHHHHHHHHH
Q 020817 215 VMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEKLRII 290 (321)
Q Consensus 215 vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG----~~~~G~~A~~slRiE 290 (321)
+|+++++.|++++|++.+..+.+++.++++.|.+|+||+||||++|.+.+..+|+.|+++| +.|+|..||++||||
T Consensus 154 ~L~~l~~~dl~~l~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~~ag~~~g~~~~g~~a~~~lRie 233 (364)
T 1wos_A 154 TLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVCRLE 233 (364)
T ss_dssp HHGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHH
T ss_pred HHHHhhCCCccccCccceEEEEECCeEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHhhhhHh
Confidence 9999988888889999999999999999999999999999999999999999999999887 789999999999999
Q ss_pred hcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 291 KGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 291 ~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
+|+|.||+|++++++|+|+||+++|||+||
T Consensus 234 ~G~p~~g~d~~~~~~P~e~~l~~~V~~~Kg 263 (364)
T 1wos_A 234 ATYLLYGQDMDENTNPFEVGLSWVVKLNKD 263 (364)
T ss_dssp TTCCCBTTTBCTTSCGGGGTCGGGCCTTSC
T ss_pred cCCcCcccccCCCCCHHHCCcccccCCCCC
Confidence 999999999999999999999999999996
No 5
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=2.3e-60 Score=458.00 Aligned_cols=251 Identities=20% Similarity=0.221 Sum_probs=234.4
Q ss_pred CCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccC
Q 020817 58 PFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (321)
Q Consensus 58 ~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~-~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~d 133 (321)
++|+|| ||++|+++||+|.+ |++|.+|+ ++.+||+|+|++|++||+|+|++|+|+||||.+|||+|+|||
T Consensus 32 ~~r~tp------l~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tnd 105 (393)
T 3gir_A 32 SLKTLP------LYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPVD 105 (393)
T ss_dssp CCEECT------THHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred ccccCc------chHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcccc
Confidence 589999 99999999999864 77999999 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEeCCCCcEEEEEEE-EEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCCh
Q 020817 134 FEILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS 212 (321)
Q Consensus 134 v~~l~~G~~~~t~~ln~kG~i~d~~~~-~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a 212 (321)
|+++++|+++|++|||++|+|+|++++ ++++|+|+|+++++..+.+++||++++.. .+|+| +++++++|+||||+|
T Consensus 106 v~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i--~~~~~a~lalqGP~A 182 (393)
T 3gir_A 106 AALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-FECQV--IALERVLLALQGPQA 182 (393)
T ss_dssp TTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-SSCEE--EECCCEEEEEESTTH
T ss_pred cccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-CceEE--EECCEEEEEEECccH
Confidence 999999999999999999999966554 56789999999999999999999999864 48999 678899999999999
Q ss_pred HHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC-CCcccCHHHHHHHHHHh
Q 020817 213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIK 291 (321)
Q Consensus 213 ~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~A~~slRiE~ 291 (321)
+++|+++++ +++++||++++.+.+ ++++.|++|+||+||||++|.+.+..+|++|+++ |++|+|..||++||||+
T Consensus 183 ~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a~g~~p~Gl~A~d~LRiEa 258 (393)
T 3gir_A 183 AAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGDSRVEWVGLAARDSLRLEA 258 (393)
T ss_dssp HHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHHHHHHHT
T ss_pred HHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhcCCceeccccchhhHHHhc
Confidence 999999987 888899998876544 7999999999999999999999999999999997 77999999999999999
Q ss_pred cCCCCCCCCCCCcchhhcCCcccccCC---CCC
Q 020817 292 GRPAPGKELTNEFNVLEAGLWNSISLD---KGS 321 (321)
Q Consensus 292 G~~~~g~d~~~~~~P~E~gL~~~V~f~---KG~ 321 (321)
|+|.||+|++++++|+|+||+|+|+|+ ||+
T Consensus 259 G~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~ 291 (393)
T 3gir_A 259 GLCLHGNDITPDTTPIDAALTWAVPKNVREKAQ 291 (393)
T ss_dssp TCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCC
T ss_pred CcccchhhcCCCCCHHHCCchheecCCCCCCCC
Confidence 999999999999999999999999998 675
No 6
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=3.1e-59 Score=448.77 Aligned_cols=257 Identities=17% Similarity=0.206 Sum_probs=240.4
Q ss_pred CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHcccc
Q 020817 57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTA 132 (321)
Q Consensus 57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~-~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~ 132 (321)
.++|+|| ||++|+++||+|.+ |++|.+|+ ++.+||+|+|++++++|+|++++|+|+|+||.+|||+++||
T Consensus 3 ~~~~~tp------l~~~~~~~Ga~~~~~~g~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~G~da~~fLq~l~t~ 76 (375)
T 1wsr_A 3 EVLRRTP------LYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVG 76 (375)
T ss_dssp -CCBCCT------THHHHHHTTCEEEEETTEEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHBSS
T ss_pred CccccCc------cHHHHHHCCCEEEEECCEEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEECCCHHHHHHHhccc
Confidence 5789999 99999999999865 66999998 78999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEeCCCCcEEEEEEEE-EeCCeEEEEeCCcchHHHHHHHHHcccC----CCCeEEEEecCcEEEEEE
Q 020817 133 NFEILREGQGCDTVFVTPTARTIDIAHAW-IMKNAVILVVSPLTCSSITEMLNKYVFF----ADKVEIQDITKQTCLFVV 207 (321)
Q Consensus 133 dv~~l~~G~~~~t~~ln~kG~i~d~~~~~-~~~d~~~L~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~~~~l~v 207 (321)
||+.+++|+++||+|||++|+|+|+++++ +++|+|||+++++..+.+++||++|+.+ ..+|+|+|+ ++++|+|
T Consensus 77 dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~d~--~~~~lal 154 (375)
T 1wsr_A 77 DIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVL--DNALLAL 154 (375)
T ss_dssp CCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCEEEEE
T ss_pred ccCcCCCCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEEEC--CEEEEEE
Confidence 99999999999999999999999665555 5678999999999999999999999853 147999998 6899999
Q ss_pred eCCChHHHHhhcccCCCCCCCCcceEEEEECCee-EEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCC-CcccCHHHHH
Q 020817 208 VGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMP-ITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG-AVPMGSNAWE 285 (321)
Q Consensus 208 ~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~-v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG-~~~~G~~A~~ 285 (321)
+||+|+++|++++..+++++||+.++.+.+++.+ +++.|++|+||+||||++|.+.+..+|++|+++| +.|+|..||+
T Consensus 155 ~GP~a~~vL~~l~~~dl~~l~~~~~~~~~~~g~~~~~i~R~g~tGe~G~el~~~~~~a~~l~~~L~~ag~~~p~G~~a~d 234 (375)
T 1wsr_A 155 QGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARD 234 (375)
T ss_dssp ESTTHHHHHHTTCSSCGGGCCTTBEEEEEETTEEEEEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHH
T ss_pred ECcCHHHHHHhhcCcchhhCCccceEEEEECCcceEEEEeCccCCCCeEEEEeeHHHHHHHHHHHHhcCCeEeCCHHHHH
Confidence 9999999999998888888999999999999998 9999999999999999999999999999999998 7999999999
Q ss_pred HHHHHhcCCCCCCCCCCCcchhhcCCcccccCC---CCC
Q 020817 286 KLRIIKGRPAPGKELTNEFNVLEAGLWNSISLD---KGS 321 (321)
Q Consensus 286 slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~---KG~ 321 (321)
+||||+|+|.||+|++++++|+|+||+++|||+ ||+
T Consensus 235 ~lRieaG~p~~g~d~~~~~~P~Eagl~~~V~~~~~~Kg~ 273 (375)
T 1wsr_A 235 SLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMD 273 (375)
T ss_dssp HHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHTC
T ss_pred HHHHhCCcCCcCccCCCCCChhHCCchheecCCCCCCCC
Confidence 999999999999999999999999999999999 775
No 7
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=2.1e-59 Score=448.69 Aligned_cols=258 Identities=14% Similarity=0.178 Sum_probs=231.0
Q ss_pred eeeeecCCCCCCCCCCCCCCCCcchHHHHHHcCCe-Eec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcch
Q 020817 46 RRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAK-ISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDD 121 (321)
Q Consensus 46 ~~~~~~p~~~~r~~r~sp~~~~~~l~~~~~~~GA~-f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~d 121 (321)
+|+|+ ++|++|+|| ||++|+++||+ |++ |++|.+|+++.+||+|+|++|++||+|||++++|+|+|
T Consensus 3 ~~~~~----~~r~~~~tp------l~~~h~~~Ga~~~~~~~gw~~P~~y~~~~~E~~avR~~~glfDvSh~g~i~v~G~D 72 (369)
T 3tfi_A 3 NFSIA----KSRRLRSTP------YTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKD 72 (369)
T ss_dssp SCEEC----CBTTBBCCT------THHHHTTTTCCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSCEEEEESTT
T ss_pred Ccccc----cccccCCCc------cHHHHHHcCCeEEeccCCEEcccccCCHHHHHHHHHcCeEEEeCCCCEEEEEECCC
Confidence 45555 899999999 99999999998 555 55999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEE-EEEeCCeEEEEeCCcchHHHHHHHHHccc-CCCCeEEEEec
Q 020817 122 RIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAH-AWIMKNAVILVVSPLTCSSITEMLNKYVF-FADKVEIQDIT 199 (321)
Q Consensus 122 A~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~-~~~~~d~~~L~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~t 199 (321)
|.+|||+|+||||++|++|+++||+|||++|+|+|+++ .++++|+|||+++.. .+..||+++.. .+.+|+|++
T Consensus 73 A~~fL~~l~t~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~~~~~V~i~~-- 147 (369)
T 3tfi_A 73 SAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADS---DVIFFAKGLASGHKFDVKIVE-- 147 (369)
T ss_dssp HHHHHHHHBSSCCTTCCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSS---CHHHHHHHHHHHHTCCCEEEC--
T ss_pred HHHHHhhhcccccccCCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcH---HHHHHHHHhhhhcCCeEEEEE--
Confidence 99999999999999999999999999999999996555 556788999987664 35678887752 134799975
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcc-cCHHHHHHHHHhCCC--
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSP-AAAGSVWETLLSQGA-- 276 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~-~~a~~l~~~L~~aG~-- 276 (321)
+++++|+||||+|+++|+++++.+++++||++++.+.++|.++++.|++|+||+||||++|. +++..+|++|+++|.
T Consensus 148 ~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i~g~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~L~~ag~~~ 227 (369)
T 3tfi_A 148 PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKEF 227 (369)
T ss_dssp CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEETTEEEEEESCCSSSSCEEEEEECSHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEECCeEEEEEeCccCCCCeEEEEEecHHHHHHHHHHHHhhCccc
Confidence 68999999999999999999888888899999999999999999999999999999999999 999999999999872
Q ss_pred --cccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 277 --VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 277 --~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
.|+|.+ .+||||+|+|.||+|++++++|+|+||+|+|+|+||
T Consensus 228 g~~~~~~~--~~lRlEaG~~~~g~d~~~~~~P~Eagl~~~V~~~Kg 271 (369)
T 3tfi_A 228 NVGPGCPN--LIERIESALLSYGNDFDNNDNPFECGFDQYVSLDSD 271 (369)
T ss_dssp TCEEECCC--HHHHHHTTCCCBTTTBCTTCCGGGTTCGGGCCCSSS
T ss_pred Cceeccch--hhHHHhcCCCCccccCCCCCChHHCCchhhccCCCC
Confidence 444432 358999999999999999999999999999999997
No 8
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=5.8e-58 Score=443.43 Aligned_cols=257 Identities=23% Similarity=0.284 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccC
Q 020817 57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (321)
Q Consensus 57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~d 133 (321)
+|+|+|| ||++|+++||+|.+ |++|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++|||
T Consensus 3 ~~~~~tp------l~~~~~~~ga~~~~~~g~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~G~Da~~fLq~l~t~d 76 (401)
T 1v5v_A 3 QMVKRVH------IFDWHKEHARKIEEFAGWEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTND 76 (401)
T ss_dssp CCCBCCT------THHHHHHHCSEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred CccccCc------hHHHHHHcCCEEEEECCEEechhcCCHHHHHHHHHhCEEEEECCCcEEEEEECCCHHHHHHHhhccc
Confidence 5789999 99999999999865 66999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEeCCCCcEEEEEE-EEEeCCeEEEEeCCcchHHHHHHH----HHcc--cCCCCeEEEEecCcEEEEE
Q 020817 134 FEILREGQGCDTVFVTPTARTIDIAH-AWIMKNAVILVVSPLTCSSITEML----NKYV--FFADKVEIQDITKQTCLFV 206 (321)
Q Consensus 134 v~~l~~G~~~~t~~ln~kG~i~d~~~-~~~~~d~~~L~~~~~~~~~~~~~L----~~~~--~~~~~V~i~d~t~~~~~l~ 206 (321)
|+.+++|+++|++|||++|+|+++++ .++++++|||+++++..+.+++|| ++++ .+ .+|+|+|+++++++|+
T Consensus 77 v~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~~-~~V~i~d~s~~~~~la 155 (401)
T 1v5v_A 77 ISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTK-LDLEIELKTYDIAMFA 155 (401)
T ss_dssp TTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTSC-CCCEEEECTTTEEEEE
T ss_pred cCcCCCCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhccCC-CcEEEEECcCCEEEEE
Confidence 99999999999999999999996555 456788999999999999999999 8887 53 4899999999999999
Q ss_pred EeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEc--------------ccCHHHHHHHHH
Q 020817 207 VVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS--------------PAAAGSVWETLL 272 (321)
Q Consensus 207 v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~--------------~~~a~~l~~~L~ 272 (321)
|+||+|+++|+++++.|++.+||+.++.+.+++.++++.|.+|+||+||||++| .+.+..+|+.|+
T Consensus 156 l~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~~g~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~~~~a~~l~~~L~ 235 (401)
T 1v5v_A 156 VQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERIL 235 (401)
T ss_dssp EESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHHHHHHHHHH
T ss_pred EECccHHHHHHHhhCCCchhcCccceEEEEeCCeEEEEEeCCCCCCCeEEEEEeccccccccccccccHHHHHHHHHHHH
Confidence 999999999999988888889999999999999999999999999999999999 999999999999
Q ss_pred hC----CCcccCHHHHHHHHHHhcCCCCCCCCC---------CCcchhhcCCcccccCCCC
Q 020817 273 SQ----GAVPMGSNAWEKLRIIKGRPAPGKELT---------NEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 273 ~a----G~~~~G~~A~~slRiE~G~~~~g~d~~---------~~~~P~E~gL~~~V~f~KG 320 (321)
++ |+.|+|..||++||||+|+|.||+|++ ++++|+|+||+++|||+||
T Consensus 236 ~ag~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~~V~f~Kg 296 (401)
T 1v5v_A 236 EEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWDKD 296 (401)
T ss_dssp HHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTTSC
T ss_pred hhhhccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCcccccCCCCC
Confidence 88 678999999999999999999999999 8999999999999999996
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=4.7e-57 Score=479.15 Aligned_cols=270 Identities=20% Similarity=0.275 Sum_probs=250.6
Q ss_pred ceeeeec-CCC----CCC-------CCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCC--------hHHHHHHHh
Q 020817 45 RRRSASI-PPT----AVL-------PFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGN--------DGEALDAAD 101 (321)
Q Consensus 45 ~~~~~~~-p~~----~~r-------~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~--------~~~E~~a~r 101 (321)
.+|.+|| |.+ ++| |+|+|| ||++|+++||+|.+ |++|.+|.. +.+||+|+|
T Consensus 548 ~~~r~p~~P~~~~~la~r~~~~~~~~~r~tp------l~~~~~~~Ga~~~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr 621 (965)
T 2gag_A 548 TTFRAPYTPVAFAALAGRNRGDQLDPARITA------MHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVR 621 (965)
T ss_dssp CCCCSCSSCEEHHHHHTTCCGGGGSCCBCCT------THHHHHHTTCEEEEETTEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ceecCCccCcccccccccccccccCCcccCC------CHHHHHHcCCEEeeECCEeeehhhCCCCcccchhHHHHHHHHH
Confidence 5688999 874 778 899999 99999999999864 779999984 689999999
Q ss_pred hCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEE-EEEeCCeEEEEeCCcchHHHH
Q 020817 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAH-AWIMKNAVILVVSPLTCSSIT 180 (321)
Q Consensus 102 ~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~-~~~~~d~~~L~~~~~~~~~~~ 180 (321)
++++++|+|+|++|+|+|+||.+|||+|+|||+++|++|+++|++|||++|+|+|+++ .++.+|+|||+++++..+.++
T Consensus 622 ~~~gl~D~S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~ 701 (965)
T 2gag_A 622 DSVGMLDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVL 701 (965)
T ss_dssp HSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHH
T ss_pred hCeEEEeCCceEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995555 557889999999999999999
Q ss_pred HHHHHccc--C-CCCeEEEEecCcEEEEEEeCCChHHHHhhcc-cCCCC--CCCCcceEEEEE-CCeeEEEEecCcCCCC
Q 020817 181 EMLNKYVF--F-ADKVEIQDITKQTCLFVVVGPKSNQVMRDLN-LGDLV--GEAYGTHRHYSV-NGMPITVGVGNVISEE 253 (321)
Q Consensus 181 ~~L~~~~~--~-~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~-~~dl~--~~~~~~~~~~~i-~g~~v~i~R~~~~Ge~ 253 (321)
+||++|+. + ..+|+|+|+|+++++|+|+||+|+++|++++ ..|++ ++||++++.+.+ ++.++++.|++|+||+
T Consensus 702 ~~l~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~dl~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~ 781 (965)
T 2gag_A 702 DWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGEL 781 (965)
T ss_dssp HHHHHHHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSC
T ss_pred HHHHHHHHhcCCCCcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCCCccccCCCceeEEEEEcCCCEEEEEeCCccCCC
Confidence 99999984 2 3479999999999999999999999999997 45775 489999999999 8999999999999999
Q ss_pred eEEEEEcccCHHHHHHHHHhCC----CcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 254 GFSLLMSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG----~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
||||++|.+++..+|++|+++| +.|+|..||++||||+|+|.||+|++++++|+|+||+|+|||+||
T Consensus 782 G~ei~~~~~~~~~l~~~L~~ag~~~g~~p~G~~a~~~lRiE~G~~~~g~d~~~~~~P~e~gl~~~V~~~K~ 852 (965)
T 2gag_A 782 AFEIAVPAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKD 852 (965)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCCTTTTCCSSCCTTTTTCGGGSCSSSC
T ss_pred EEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHHHHHHhCCccCcccccCCCCCHHHCCchhhcCCCCC
Confidence 9999999999999999999886 689999999999999999999999999999999999999999995
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=6.2e-52 Score=395.08 Aligned_cols=223 Identities=22% Similarity=0.251 Sum_probs=204.5
Q ss_pred HHHHHHhhCcE-EEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCC
Q 020817 95 EALDAADNGVA-AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSP 173 (321)
Q Consensus 95 ~E~~a~r~~vg-l~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~ 173 (321)
.||+|||++|| ++|+|+|++|+|+|+||.+|||+|+||||++|++|+++|++|||++|+|+|+++++..+|+|||++++
T Consensus 27 ~e~~avr~~~g~l~DlS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~d~~~lv~~a 106 (355)
T 3ttg_A 27 SDTRIAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFEDKIALFPPA 106 (355)
T ss_dssp TTHHHHHHSCEEECCSSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEETTEEEEECCT
T ss_pred HHHHHHHhcCeEEEeCCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEECCEEEEEECc
Confidence 46699999999 99999999999999999999999999999999999999999999999999888887778999999999
Q ss_pred cchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEE-EecC-cCC
Q 020817 174 LTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITV-GVGN-VIS 251 (321)
Q Consensus 174 ~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i-~R~~-~~G 251 (321)
+..+.+++||++|+.+..+|+|+|+++++++|+|+||+|+++|++++..++++++|.... + |..+.+ .|++ |+|
T Consensus 107 ~~~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~~~---~-g~~~~~~~r~GsytG 182 (355)
T 3ttg_A 107 GTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRMLK---N-GGYVLIHPTSFQHNL 182 (355)
T ss_dssp TCHHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSEEEECT---T-SCEEEECCSBCGGGC
T ss_pred ccHHHHHHHHHHhcccCCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCcceeec---c-CcEEEEecCcccccC
Confidence 999999999999987324899999999999999999999999999987788777665432 2 456666 7785 999
Q ss_pred C--CeEEEEEcccCHHHHHHHHHh----CCCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCc-ccccCCCCC
Q 020817 252 E--EGFSLLMSPAAAGSVWETLLS----QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW-NSISLDKGS 321 (321)
Q Consensus 252 e--~G~el~~~~~~a~~l~~~L~~----aG~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~-~~V~f~KG~ 321 (321)
| +||||++|.+.+..+|++|++ .|+.|+|..||++||||+|+|.||+|++++++|+|+||. |+|||+||+
T Consensus 183 E~e~G~el~~p~~~a~~l~~~L~~aG~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~~~~~P~Eagl~~~~V~f~Kgc 259 (355)
T 3ttg_A 183 DVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGC 259 (355)
T ss_dssp BCCCEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCTTTTSSTTCCTTTTTCHHHHCCSSSCC
T ss_pred ccCCeEEEEEeHHHHHHHHHHHHhhhhhcCCccCCHHHHHHHHHHCCCcccccccCCCCCHHHcCCCCCeEECCCCC
Confidence 7 999999999999999999998 568999999999999999999999999999999999999 999999985
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=3e-45 Score=346.94 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=187.3
Q ss_pred hCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHHHH
Q 020817 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITE 181 (321)
Q Consensus 102 ~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~~~ 181 (321)
-.|+++|+|+|++|+|+|+||.+|||+|+||||.++++|+++|++|||++|||+++++++..+++|+|+++++..+.+++
T Consensus 29 ~~~~l~dlS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~~~~lv~~a~~~~~~~~ 108 (338)
T 1vly_A 29 LPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLT 108 (338)
T ss_dssp CCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred CceEEEECCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeCCcEEEEecchhhHHHHH
Confidence 35899999999999999999999999999999999999999999999999999988777776679999999999999999
Q ss_pred HHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccC-CCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEc
Q 020817 182 MLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMS 260 (321)
Q Consensus 182 ~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~-dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~ 260 (321)
||++|+.+ .+|+|++. +++++++|+||+|+++|++++.. +...++| ..+++.++ .|++ +||+||||++|
T Consensus 109 ~L~~~~~~-~~V~i~~~-~~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~-----~~~~g~~~--~~~~-tge~G~el~~~ 178 (338)
T 1vly_A 109 ELKKYAVF-SKVTIAPD-DERVLLGVAGFQARAALANLFSELPSKEKQV-----VKEGATTL--LWFE-HPAERFLIVTD 178 (338)
T ss_dssp HHHTTCSS-SSCEEEEE-CSSEEEEEESTTHHHHHHTTSSCCCBTTBCE-----EEETTEEE--EEEC-SSSCEEEEEEC
T ss_pred HHHHhhhh-cceEEEEc-CceEEEEEECCcHHHHHHhhcccCCCcccce-----eecCCeEE--EEec-CCCCcEEEEec
Confidence 99999875 48999987 88999999999999999998652 2333443 45777663 3444 89999999999
Q ss_pred ccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCc--ccccCCCCC
Q 020817 261 PAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLW--NSISLDKGS 321 (321)
Q Consensus 261 ~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~--~~V~f~KG~ 321 (321)
.+.+..+|++|+++ +.++|..||++||||+|+|.||+|++++++|+|+||+ ++|||+||+
T Consensus 179 ~~~~~~l~~~L~~~-~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~Eagl~~l~~V~f~Kgc 240 (338)
T 1vly_A 179 EATANMLTDKLRGE-AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGC 240 (338)
T ss_dssp HHHHHHHHHHHBTT-BEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSSSCC
T ss_pred hHHHHHHHHHhhhc-CccCCHHHHHHHHHHcCCccccccccCCcChhhcCccccCCCcCCCcc
Confidence 99999999999885 7899999999999999999999999999999999999 999999984
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=99.97 E-value=1.1e-29 Score=224.65 Aligned_cols=160 Identities=13% Similarity=0.169 Sum_probs=138.1
Q ss_pred HhhCcEEEeCCCceEEEEEcch---HHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcc
Q 020817 100 ADNGVAAVDLSHFGRIRVSGDD---RIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLT 175 (321)
Q Consensus 100 ~r~~vgl~Dls~~~~i~V~G~d---A~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~ 175 (321)
.|++|||||+|+|+++.|+|+| +.++|+.+++++++. +.|.+.++ + |.++.++++|+|+|++++
T Consensus 28 ~r~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~g~~l~~-~~g~v~~~---------~dDl~v~rl~~d~~llv~na-- 95 (210)
T 2gag_C 28 VAGRVELREIAFTTQISLRCAPGTQAHAALAAATGAGLPA-KVGEVAGE---------AQGTAVLWLAPDEFLATSAE-- 95 (210)
T ss_dssp BTTTBEEEECCSCEEEEEECCTTSHHHHHHHHHHSSCCCC-STTBCEEC---------TTSCEEEEEETTEEEEEESS--
T ss_pred ccCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEEc---------cCCEEEEEEcCCEEEEEeCc--
Confidence 7999999999999999999999 566677777777764 33443221 3 456778899999999987
Q ss_pred hHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCC
Q 020817 176 CSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEE 253 (321)
Q Consensus 176 ~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~ 253 (321)
.+++++||++++. ..+|.++|+|+++++|+||||+|+++|+++++.|+++ +||++++.+.+++.+|++.| +||+
T Consensus 96 ~~~d~~~l~~~l~-~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~v~R---tGEd 171 (210)
T 2gag_C 96 NTELGGVLSAALG-DAPGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIPVLLWR---TGEQ 171 (210)
T ss_dssp CTTHHHHHHHHHT-TSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEEE---EETT
T ss_pred HHHHHHHHHHhcC-cCCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEEEEEEE---eCCC
Confidence 4678999999873 2269999999999999999999999999999888986 99999999999999999999 7999
Q ss_pred eEEEEEcccCHHHHHHHHHhCC
Q 020817 254 GFSLLMSPAAAGSVWETLLSQG 275 (321)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG 275 (321)
||||++|.+++..||+.|+++|
T Consensus 172 GfEI~v~~~~A~~lw~~Ll~a~ 193 (210)
T 2gag_C 172 AWRIMPRASFTEHTVHWLVDAM 193 (210)
T ss_dssp EEEEEEBGGGHHHHHHHHHHHH
T ss_pred EEEEEEEHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=99.96 E-value=1e-29 Score=224.39 Aligned_cols=160 Identities=11% Similarity=0.150 Sum_probs=135.5
Q ss_pred HhhCcEEEeCCCceEEEEEcchHHHHH---HHccccCCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcc
Q 020817 100 ADNGVAAVDLSHFGRIRVSGDDRIQFL---HNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLT 175 (321)
Q Consensus 100 ~r~~vgl~Dls~~~~i~V~G~dA~~fL---q~l~t~dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~ 175 (321)
.+++|||||+|+|+++.|+|+||.+|| +.+++++++. ++|.+.+ + + |.++.++++|+|+|++++
T Consensus 26 ~~~~vglfDvShmg~~~v~G~~a~~~l~~l~~~~~~~l~~-~~g~~~~--~-------~dDl~v~rl~~d~~llv~na-- 93 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPA-AVGEVAG--D-------VSGTAVLWLGPDEFLLAAEE-- 93 (206)
T ss_dssp STTCBEEEECCSCEEEEEECCTTSHHHHHHHHHSSSCCCC-STTBEEE--C-------TTSCEEEEEETTEEEEEESS--
T ss_pred CCCcEEEEECCCCcEEEEEeCChhHHHHHHHHHhCcCCCC-CCCEEEE--e-------cCCEEEEEEcCCEEEEEcCc--
Confidence 357899999999999999999998554 5555555543 3444442 1 5 556777899999999987
Q ss_pred hHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCC--CCCcceEEEEECCeeEEEEecCcCCCC
Q 020817 176 CSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEE 253 (321)
Q Consensus 176 ~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~--~~~~~~~~~~i~g~~v~i~R~~~~Ge~ 253 (321)
.+++.+||++++. ..+|.++|+|+++++|+||||+|+++|+++++.|+++ +||++++.+.+++.+|++.|++ |+
T Consensus 94 ~~~d~~~l~~~l~-~~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~i~Rtg---Ed 169 (206)
T 1x31_C 94 NPALLDTLQGALG-QEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTG---EQ 169 (206)
T ss_dssp CTHHHHHHHHHHT-TSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEEEEEEEEE---TT
T ss_pred hHHHHHHHHHhcC-cCcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeEEEEEEcC---CC
Confidence 4679999999873 2258999999999999999999999999999888986 9999999999999999999975 99
Q ss_pred eEEEEEcccCHHHHHHHHHhCC
Q 020817 254 GFSLLMSPAAAGSVWETLLSQG 275 (321)
Q Consensus 254 G~el~~~~~~a~~l~~~L~~aG 275 (321)
||||+||.+++..||+.|+++|
T Consensus 170 GfEI~v~~~~A~~lw~~L~~ag 191 (206)
T 1x31_C 170 SWRILPRASFTEHTVHWLIDAM 191 (206)
T ss_dssp EEEEECBGGGHHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHHHHHH
Confidence 9999999999999999999976
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=97.39 E-value=0.0016 Score=56.69 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=67.6
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHHHccccCCCC--CCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHH
Q 020817 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (321)
Q Consensus 103 ~vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~~--l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~ 179 (321)
.+.+.|+|. ++.|.|+||.|.+.|+.++..|+.. ++.+++..+.+ +++ ...+.|.+|+.|-|.++.+.+..+
T Consensus 111 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g~-~v~v~RtGEdGfEI~v~~~~A~~l 185 (210)
T 2gag_C 111 PGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----ANI-PVLLWRTGEQAWRIMPRASFTEHT 185 (210)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TTE-EEEEEEEETTEEEEEEBGGGHHHH
T ss_pred CEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----CCE-EEEEEEeCCCEEEEEEEHHHHHHH
Confidence 588999998 8999999999999999998888875 78898887654 232 456777889999999999999999
Q ss_pred HHHHHHcc
Q 020817 180 TEMLNKYV 187 (321)
Q Consensus 180 ~~~L~~~~ 187 (321)
+++|....
T Consensus 186 w~~Ll~a~ 193 (210)
T 2gag_C 186 VHWLVDAM 193 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997653
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=97.31 E-value=0.0016 Score=56.50 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=67.3
Q ss_pred CcEEEeCCC-ceEEEEEcchHHHHHHHccccCCCC--CCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeCCcchHHH
Q 020817 103 GVAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSI 179 (321)
Q Consensus 103 ~vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~~--l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~~~~~~~~ 179 (321)
.+.+.|+|. ++.|.|+||.|.+.|+.++..|+.. ++.+++..+.+ +++ ...+.|.+|+.|-|.++.+.+..+
T Consensus 109 ~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g~-~v~i~RtgEdGfEI~v~~~~A~~l 183 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSL----ANI-PVLLWRTGEQSWRILPRASFTEHT 183 (206)
T ss_dssp SSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TTE-EEEEEEEETTEEEEECBGGGHHHH
T ss_pred cEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE----cCe-EEEEEEcCCCeEEEEEEHHHHHHH
Confidence 488999998 8999999999999999998888875 78898887655 232 456777889999999999999999
Q ss_pred HHHHHHcc
Q 020817 180 TEMLNKYV 187 (321)
Q Consensus 180 ~~~L~~~~ 187 (321)
+++|....
T Consensus 184 w~~L~~ag 191 (206)
T 1x31_C 184 VHWLIDAM 191 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997643
No 16
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=96.68 E-value=4.9e-05 Score=74.69 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=47.6
Q ss_pred eeeEEeecccc--ccccc--ccCcc-CCcccccccccccccceeeeecCCC---CCCCCCCCCCCCCcchHHHHH
Q 020817 9 TTHLIVGSTSR--LHNTR--TTKFF-QNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVK 75 (321)
Q Consensus 9 ~~~~~~~~~~~--~~~~r--~~~~~-~~~~~~~~~~~e~~~~~~~~~~p~~---~~r~~r~sp~~~~~~l~~~~~ 75 (321)
+++|+-|.+.. +|.|| |.... .+++| .+|+.|.|++.|.++||+. ++||+|+|| ||+.+.
T Consensus 428 l~~~~~g~~~~~~l~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~------l~~~~~ 495 (497)
T 2bry_A 428 VKRWAEGAGPLEVLAERESLYQLLSQTSPEN-MHRNVAQYGLDPATRYPNLNLRAVTPNQVQD------LYDMMD 495 (497)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTGGGCCTTT-SCSCGGGCCSSGGGTSSSCCTTSSCGGGGGG------GEEECS
T ss_pred HHHHhCCCCccchhhhHHHHhhhhhhcCHHH-HhhhHHhhcCCCcCcCCCcccccccCCccCc------cccccC
Confidence 45563365544 89999 66433 38889 9999999999999999983 999999999 998654
No 17
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=94.60 E-value=0.26 Score=46.74 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=63.3
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.|-|-|+|. ++.|.|.||.|.+.|+.++..|++.++.+..+...+ +++ ++++.|. ++..|.|+++...+.
T Consensus 75 ~~gl~DvSh-~g~i~V~G~DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl---~~d~~~lv~~a~~~~ 150 (393)
T 3gir_A 75 HAGLFDISH-MKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRL---AECRFMLVANAGNAQ 150 (393)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CeEEEeCCC-cEEEEEECCCHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECchhHH
Confidence 688999975 799999999999999999999998887777665433 222 5667775 578999999999999
Q ss_pred HHHHHHHh
Q 020817 266 SVWETLLS 273 (321)
Q Consensus 266 ~l~~~L~~ 273 (321)
.+++.|..
T Consensus 151 ~~~~~L~~ 158 (393)
T 3gir_A 151 ADFAELEK 158 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98888865
No 18
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=93.57 E-value=0.46 Score=44.32 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=62.9
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC-e--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG-M--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g-~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
++-+-|++. ++.|.|.||.+.+.|+.++..|++.++.+..+...+ .| + ++.+.|. ++..|.|.++.+.+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~---~~d~~ll~~~a~~~~ 121 (365)
T 1yx2_A 46 AAGLFDVSH-MGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQK---GENRYLLVINASNID 121 (365)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CcEEEECCC-eEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE---eCCEEEEEECcccHH
Confidence 688899976 799999999999999999988998877666654332 22 2 4566665 577899999999999
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+++.|...
T Consensus 122 ~~~~~L~~~ 130 (365)
T 1yx2_A 122 KDLAWMKEH 130 (365)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999888764
No 19
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=93.50 E-value=0.54 Score=43.84 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=62.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC-e--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG-M--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g-~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.+-+-|++. ++.|.|.||.+.+.|+.++..|++.++.+..+...+ .| . ++.+.|. ++..|.|.++.+.+.
T Consensus 42 ~~gl~dls~-~~~i~v~G~da~~fL~~l~t~dv~~l~~g~~~yt~~ln~~G~i~~d~~v~r~---~~d~~ll~~~a~~~~ 117 (364)
T 1wos_A 42 SVGMFDVSH-MGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKV---SPDEALMVVNAANIE 117 (364)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE---eCCEEEEEECcccHH
Confidence 577889976 799999999999999999999998877666554332 22 2 4566665 577899999999999
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+++.|...
T Consensus 118 ~~~~~L~~~ 126 (364)
T 1wos_A 118 KDFNWIKSH 126 (364)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988764
No 20
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=93.34 E-value=0.57 Score=44.39 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=60.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC-e--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG-M--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g-~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-+.|++. ++.|.|.||.+.+.|+.++..|++.++.+..+...+ .| + ++.+.|. ++..|.|.++.+.+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~ll~~~a~~~~ 121 (401)
T 1v5v_A 46 AVGIFDVSH-MGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNM---GNNEYLMICDSDAFE 121 (401)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHH
T ss_pred CEEEEECCC-cEEEEEECCCHHHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECcccHH
Confidence 678999976 799999999999999999989998877666554322 22 2 4566665 577899999999998
Q ss_pred HHHHHH
Q 020817 266 SVWETL 271 (321)
Q Consensus 266 ~l~~~L 271 (321)
.+++.|
T Consensus 122 ~~~~~L 127 (401)
T 1v5v_A 122 KLYAWF 127 (401)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888888
No 21
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=93.04 E-value=0.68 Score=43.33 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=59.8
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC-e--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG-M--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g-~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-+-|++. ++.|.|.||.+.+.|+.++..|++.++.+..+...+ .| + ++.+.|. ++..|-|.++...+.
T Consensus 47 ~~gl~Dls~-~g~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~---~~d~~~lv~~a~~~~ 122 (375)
T 1wsr_A 47 HCSLFDVSH-MLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNT---SEGHLYVVSNAGCWE 122 (375)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEEC---TTSSEEEEECGGGHH
T ss_pred CcEEEECCc-eEEEEEECCCHHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEEE---cCCEEEEEeCCccHH
Confidence 688999976 699999999999999999999998887666554332 22 2 4566664 677899999998888
Q ss_pred HHHHHHH
Q 020817 266 SVWETLL 272 (321)
Q Consensus 266 ~l~~~L~ 272 (321)
.+++.|.
T Consensus 123 ~~~~~L~ 129 (375)
T 1wsr_A 123 KDLALMQ 129 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 22
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=92.88 E-value=0.57 Score=43.28 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=61.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.|.+-|++. ++.|.|.||.|.+.|+.++..|++.++.+..+...+ |+. ++++.|. ++ +|.+.++.+.+.
T Consensus 30 ~~~l~dlS~-~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~---~~-~~~lv~~a~~~~ 104 (338)
T 1vly_A 30 PLTLMTLDD-WALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD---GD-GFAWIERRSVRE 104 (338)
T ss_dssp CSEEEECTT-EEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEE---TT-EEEEEEEHHHHH
T ss_pred ceEEEECCC-cEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEe---CC-cEEEEecchhhH
Confidence 378889975 899999999999999999999998877666554332 222 5667775 45 899999998899
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+++.|...
T Consensus 105 ~~~~~L~~~ 113 (338)
T 1vly_A 105 PQLTELKKY 113 (338)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999888764
No 23
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=92.66 E-value=0.65 Score=43.68 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=61.3
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCC-CCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGE-AYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~-~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
+|-+-|++. ++.|.|.||.+.+.|+.++..|++.+ +.+..+...+ +++ ++++.|. ++..|.|.++...+
T Consensus 55 ~~gl~DlS~-~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~~lv~~a~~~ 130 (381)
T 1vlo_A 55 DAGMFDVSH-MTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYF---TEDFFRLVVNSATR 130 (381)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGH
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccH
Confidence 578889976 79999999999999999998899887 6666554332 222 4667775 67799999999998
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
..+++.|..
T Consensus 131 ~~~~~~L~~ 139 (381)
T 1vlo_A 131 EKDLSWITQ 139 (381)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 24
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=91.07 E-value=0.99 Score=41.99 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=61.7
Q ss_pred CeE-EEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCH
Q 020817 192 KVE-IQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 192 ~V~-i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
+|- +-|++. ++.|.|.||.|.+.|+.++..|++.++.+..+...+ +++ ++++.|. + ..|-|.++.+.+
T Consensus 35 ~~g~l~DlS~-~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~---~-d~~~lv~~a~~~ 109 (355)
T 3ttg_A 35 KFGLFYPSVS-RPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF---E-DKIALFPPAGTR 109 (355)
T ss_dssp SCEEECCSSC-CCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEE---T-TEEEEECCTTCH
T ss_pred cCeEEEeCCC-cEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEE---C-CEEEEEECcccH
Confidence 577 888874 799999999999999999999998887776664433 222 5677776 2 589999999999
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
..+++.|..
T Consensus 110 ~~~~~~L~~ 118 (355)
T 3ttg_A 110 EEFVNHLKK 118 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.57 E-value=1.2 Score=43.00 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCceEEEEEcchHHHHHHHcccc-CCCCCCCCcEEEEEEeCC-CCcEEEEEEEE-E-------eCCeEEEEeCC--cchH
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTA-NFEILREGQGCDTVFVTP-TARTIDIAHAW-I-------MKNAVILVVSP--LTCS 177 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~-dv~~l~~G~~~~t~~ln~-kG~i~d~~~~~-~-------~~d~~~L~~~~--~~~~ 177 (321)
+.-+.|+|+||+|.+.++.++.. .....++-++.|+.+.++ +|.++|..++. . +||-.=+-|.+ ....
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~ 101 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQ 101 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHH
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHH
Confidence 45689999999999999999854 333446788999999995 68888765543 3 35644444444 4445
Q ss_pred HHHHHHHH
Q 020817 178 SITEMLNK 185 (321)
Q Consensus 178 ~~~~~L~~ 185 (321)
.+++.+-+
T Consensus 102 ~~l~~~~~ 109 (462)
T 3geh_A 102 QVLQLCLE 109 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 26
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=89.38 E-value=2 Score=45.24 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=61.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-|-|++. ++.|.|.||.+.+.|+.++..|++.++.+..+..-+ +++ ++.+.|. ++..|-|.++...+.
T Consensus 623 ~~gl~D~S~-~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~---~~~~~~l~~~~~~~~ 698 (965)
T 2gag_A 623 SVGMLDATT-LGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRL---AEDRFLLHTTTGGAA 698 (965)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHH
T ss_pred CeEEEeCCc-eEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccHH
Confidence 688999975 799999999999999999999998887776664433 222 4667775 678899999999888
Q ss_pred HHHHHHH
Q 020817 266 SVWETLL 272 (321)
Q Consensus 266 ~l~~~L~ 272 (321)
.+++.|.
T Consensus 699 ~~~~~l~ 705 (965)
T 2gag_A 699 DVLDWLE 705 (965)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=86.97 E-value=1.5 Score=42.46 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred CCceEEEEEcchHHHHHHHcccc-----CCCCCCCCcEEEEEEeCCCCcEEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTA-----NFEILREGQGCDTVFVTPTARTIDIAHAW 161 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~-----dv~~l~~G~~~~t~~ln~kG~i~d~~~~~ 161 (321)
+.-+.|+|+||+|.+.++.++.. ++...++-++.|+.+.++ |.++|..++.
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~ 83 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIAL 83 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEE
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEE
Confidence 45689999999999999999863 233346788999999986 8899765543
No 28
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.00 E-value=4.6 Score=38.85 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=52.7
Q ss_pred CcEEEEEEeCCChHHHHhhcccC-CCCCCCCcceEEEEEC----Ce---eEEEEe----cCcCCCCeEEEEEccc--CHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLG-DLVGEAYGTHRHYSVN----GM---PITVGV----GNVISEEGFSLLMSPA--AAG 265 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~-dl~~~~~~~~~~~~i~----g~---~v~i~R----~~~~Ge~G~el~~~~~--~a~ 265 (321)
...+++-|.||+|.+++++++.. .+...+........+- +. .+.++. -|||||+-.||+|... ...
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~ 101 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQ 101 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHH
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHH
Confidence 36789999999999999998753 2222222222222221 21 233333 3899999999999865 446
Q ss_pred HHHHHHHhCCCccc
Q 020817 266 SVWETLLSQGAVPM 279 (321)
Q Consensus 266 ~l~~~L~~aG~~~~ 279 (321)
.+.+.|.+.|++++
T Consensus 102 ~~l~~~~~~g~r~A 115 (462)
T 3geh_A 102 QVLQLCLESGARLA 115 (462)
T ss_dssp HHHHHHHHTTCEEC
T ss_pred HHHHHHHHCCCeec
Confidence 78899998887554
No 29
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=85.94 E-value=3.1 Score=38.78 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=58.7
Q ss_pred hCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEE---eCCeEEEEeCC-cchH
Q 020817 102 NGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSP-LTCS 177 (321)
Q Consensus 102 ~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~---~~d~~~L~~~~-~~~~ 177 (321)
-.|-+.+ ...+.|.|.||.|.+.|+.++..|+..++..+...+.+ .| ....+.|. .++.|-|.++. ....
T Consensus 141 ~~V~i~~-~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i---~g--~~~~i~R~gytGE~G~Ei~~~~~~~a~ 214 (369)
T 3tfi_A 141 FDVKIVE-PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDF---EG--TKHLIARSGWSKQGGYEVYVENTQSGQ 214 (369)
T ss_dssp CCCEEEC-CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEE---TT--EEEEEESCCSSSSCEEEEEECSHHHHH
T ss_pred CeEEEEE-CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEE---CC--eEEEEEeCccCCCCeEEEEEecHHHHH
Confidence 3678776 67899999999999999999887887777666654333 22 12344453 57899999998 8888
Q ss_pred HHHHHHHHc
Q 020817 178 SITEMLNKY 186 (321)
Q Consensus 178 ~~~~~L~~~ 186 (321)
.+++.|...
T Consensus 215 ~lw~~L~~a 223 (369)
T 3tfi_A 215 KLYDHLFEV 223 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888887653
No 30
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=85.66 E-value=1.1 Score=43.59 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=39.6
Q ss_pred CCceEEEEEcchHHHHHHHccc-cCCCCCCCCcEEEEEEeCCCCcEEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQST-ANFEILREGQGCDTVFVTPTARTIDIAHAW 161 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t-~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~ 161 (321)
+.-+.|+|+||+|.+.++.++. .+.+ ++-.+.|+.+.+ +|.++|..++.
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~iDe~~v~ 95 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSKI--VPRKAIHGWIHE-NGEDVDEVVVV 95 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSCC--CBTBCEEEEECC-SSCCCCEEEEE
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCCC--CCceEEEEEEec-CCeeeeEEEEE
Confidence 4568999999999999999985 2333 678899999999 89998766554
No 31
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=84.35 E-value=5.5 Score=38.45 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=51.0
Q ss_pred CcEEEEEEeCCChHHHHhhcccC-----CCCCCCCcceEEEEE--CC-----eeEEEEe--cCcCCCCeEEEEEcccCH-
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLG-----DLVGEAYGTHRHYSV--NG-----MPITVGV--GNVISEEGFSLLMSPAAA- 264 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~-----dl~~~~~~~~~~~~i--~g-----~~v~i~R--~~~~Ge~G~el~~~~~~a- 264 (321)
...+++-|.||+|.+++++++.. ++...+........+ .+ .-+...+ -|||||+-.||+|....+
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v 107 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVV 107 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESSSCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHH
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecCCcccceEEEEEecCCCCCCCCCeEEEECCCCHHH
Confidence 36788999999999999998753 121122211111111 12 2223333 489999999999986544
Q ss_pred -HHHHHHHHhCCCccc
Q 020817 265 -GSVWETLLSQGAVPM 279 (321)
Q Consensus 265 -~~l~~~L~~aG~~~~ 279 (321)
..+.+.|.+.|++++
T Consensus 108 ~~~~l~~~~~~g~r~A 123 (476)
T 3gee_A 108 VGRVLRLMLDNGCRLA 123 (476)
T ss_dssp HHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHCCCeec
Confidence 678888888887544
No 32
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=82.15 E-value=3.8 Score=42.20 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=58.5
Q ss_pred C-cEEEeCCC-ceEEEEEcchHHHHHHHccccCCCC--CCCCcEEEEEEeCCCCcEEEEEEEEE---eCCeEEEEeCCcc
Q 020817 103 G-VAAVDLSH-FGRIRVSGDDRIQFLHNQSTANFEI--LREGQGCDTVFVTPTARTIDIAHAWI---MKNAVILVVSPLT 175 (321)
Q Consensus 103 ~-vgl~Dls~-~~~i~V~G~dA~~fLq~l~t~dv~~--l~~G~~~~t~~ln~kG~i~d~~~~~~---~~d~~~L~~~~~~ 175 (321)
. |.+.|+|. ++.|.|.||.|.+.|+.++..|+.. ++..+...+.+ .| ....+.+. .++.|-|.++...
T Consensus 591 ~~v~i~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~---~g--~~~~~~r~~~tge~g~ei~~~~~~ 665 (830)
T 1pj5_A 591 DWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVI---GG--IPVTAMRLSYVGELGWELYTSADN 665 (830)
T ss_dssp CCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE---TT--EEEEEECCCTTSSSEEEEEEEHHH
T ss_pred CeEEEEEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEE---CC--EEEEEEECcccCCCcEEEEecHHH
Confidence 5 99999976 7999999999999999998778743 66666654433 22 13345554 3789999999888
Q ss_pred hHHHHHHHHH
Q 020817 176 CSSITEMLNK 185 (321)
Q Consensus 176 ~~~~~~~L~~ 185 (321)
...+.+.|..
T Consensus 666 ~~~l~~~l~~ 675 (830)
T 1pj5_A 666 GQRLWDALWQ 675 (830)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887754
No 33
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=57.12 E-value=59 Score=31.20 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=49.0
Q ss_pred cEEEEEEeCCChHHHHhhccc-CCCCCCCCcceEEEEE--CC-----eeEEEEe--cCcCCCCeEEEEEcccC--HHHHH
Q 020817 201 QTCLFVVVGPKSNQVMRDLNL-GDLVGEAYGTHRHYSV--NG-----MPITVGV--GNVISEEGFSLLMSPAA--AGSVW 268 (321)
Q Consensus 201 ~~~~l~v~GP~a~~vL~~l~~-~dl~~~~~~~~~~~~i--~g-----~~v~i~R--~~~~Ge~G~el~~~~~~--a~~l~ 268 (321)
..+++-|.||+|.+++++++. ..+. +........+ .+ .-+.+.+ .||+||.-.|++|.... ...+.
T Consensus 47 ~i~iiRiSG~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l 124 (482)
T 1xzp_A 47 AIAILRLSGPDSWKIVQKHLRTRSKI--VPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLL 124 (482)
T ss_dssp SCEEEEEESSSHHHHHHTTEEESSCC--CBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHH
T ss_pred eEEEEEcccHHHHHHHHHHhcCCCCC--CCceEEEEEEecCCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHH
Confidence 578899999999999999975 2221 1111111111 12 2233333 58999999999987653 35677
Q ss_pred HHHHhCCCccc
Q 020817 269 ETLLSQGAVPM 279 (321)
Q Consensus 269 ~~L~~aG~~~~ 279 (321)
+.|.+.|++++
T Consensus 125 ~~l~~~g~r~A 135 (482)
T 1xzp_A 125 DLFLKSGARMA 135 (482)
T ss_dssp HHHHTTTCEEC
T ss_pred HHHHHcCCEeC
Confidence 88887776444
No 34
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=20.25 E-value=90 Score=25.93 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEcchHHHHHHHccccCCCCC
Q 020817 113 GRIRVSGDDRIQFLHNQSTANFEIL 137 (321)
Q Consensus 113 ~~i~V~G~dA~~fLq~l~t~dv~~l 137 (321)
.++.++|+.+.+||+++++--++++
T Consensus 90 ~kVTLRg~~my~FL~rll~v~lPri 114 (182)
T 1mji_A 90 LRVTLRRDRMWIFLEKLLNVALPRI 114 (182)
T ss_dssp EEEEECHHHHHHHHHHHHHTTTTTC
T ss_pred EEEEEccHHHHHHHHHHHHHhcccc
Confidence 4789999999999999999644443
Done!