Query 020817
Match_columns 321
No_of_seqs 268 out of 1705
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 08:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020817.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020817hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pj5a4 d.250.1.1 (A:428-742) 100.0 1.1E-63 8.3E-68 466.8 30.4 258 57-321 1-300 (315)
2 d1wosa2 d.250.1.1 (A:1-278) Gl 100.0 8.6E-62 6.3E-66 446.6 33.6 255 59-320 1-263 (278)
3 d1v5va2 d.250.1.1 (A:3-312) Gl 100.0 1.8E-61 1.3E-65 451.1 30.5 258 57-320 1-294 (310)
4 d1vloa2 d.250.1.1 (A:4-277) Gl 100.0 2.6E-60 1.9E-64 435.8 23.1 250 68-319 2-256 (274)
5 d1vlya2 d.250.1.1 (A:3-243) Hy 100.0 2.1E-40 1.5E-44 295.2 21.3 219 93-321 6-226 (241)
6 d1xzpa3 d.250.1.2 (A:1-117) Tr 94.7 0.028 2E-06 42.4 6.0 49 110-160 14-62 (117)
7 d1xzpa3 d.250.1.2 (A:1-117) Tr 93.7 0.38 2.8E-05 35.8 10.7 86 200-285 14-111 (117)
8 d1vlya2 d.250.1.1 (A:3-243) Hy 93.1 0.28 2E-05 40.1 10.2 78 192-274 16-99 (241)
9 d1v5va2 d.250.1.1 (A:3-312) Gl 92.1 0.55 4E-05 40.5 11.1 75 192-270 44-124 (310)
10 d1wosa2 d.250.1.1 (A:1-278) Gl 91.6 0.73 5.3E-05 39.0 11.1 79 192-274 42-126 (278)
11 d1vloa2 d.250.1.1 (A:4-277) Gl 87.8 1.7 0.00012 36.4 10.4 78 192-273 40-124 (274)
12 d1pj5a4 d.250.1.1 (A:428-742) 80.4 4.3 0.00032 34.6 9.8 74 192-270 72-151 (315)
No 1
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=100.00 E-value=1.1e-63 Score=466.83 Aligned_cols=258 Identities=23% Similarity=0.317 Sum_probs=238.2
Q ss_pred CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCC----------------------------hHHHHHHHhhCcE
Q 020817 57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGN----------------------------DGEALDAADNGVA 105 (321)
Q Consensus 57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~----------------------------~~~E~~a~r~~vg 105 (321)
||+|+|| ||++|+++||+|++ |++|.+|.. +.+||+|||++||
T Consensus 1 R~lr~sp------l~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vg 74 (315)
T d1pj5a4 1 RNLRVSP------FHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVA 74 (315)
T ss_dssp CCSBCCT------THHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCE
T ss_pred CCCccCc------cHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcc
Confidence 8999999 99999999999874 778888842 6899999999999
Q ss_pred EEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHH
Q 020817 106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLN 184 (321)
Q Consensus 106 l~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~ 184 (321)
|+|+|+|++|+|+|+||.+|||+++|||++. ++|+++||+|||++|+|+ |.+++++.+++|+|++++.....+..|+.
T Consensus 75 lfD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~ 153 (315)
T d1pj5a4 75 MYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAA 153 (315)
T ss_dssp EEECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHH
T ss_pred eeccccceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhh
Confidence 9999999999999999999999999999985 889999999999999999 55667789999999998888888877776
Q ss_pred Hccc----CCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCC--CCCCcceEEEEECCeeEEEEecCcCCCCeEEEE
Q 020817 185 KYVF----FADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLL 258 (321)
Q Consensus 185 ~~~~----~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~--~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~ 258 (321)
++.. ...+|+++|+|+++++|+||||+|+++|++++..+++ ++||++++.+.++|.+|++.|++|+||+||||+
T Consensus 154 ~~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~ 233 (315)
T d1pj5a4 154 RHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELY 233 (315)
T ss_dssp HHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEE
T ss_pred hhhhhcccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEEEEEEecCccCCCeEEec
Confidence 5542 1346999999999999999999999999999988876 489999999999999999999999999999999
Q ss_pred EcccCHHHHHHHHHhCC----CcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcccccCCCCC
Q 020817 259 MSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGS 321 (321)
Q Consensus 259 ~~~~~a~~l~~~L~~aG----~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG~ 321 (321)
+|.+++..||+.|+++| ++|+|..|+++||||||||.||+|++++++|+|+||+|+|||+|+|
T Consensus 234 ~~~~~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~K~~ 300 (315)
T d1pj5a4 234 TSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKES 300 (315)
T ss_dssp EEHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSC
T ss_pred ccHHHHHHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCCCCC
Confidence 99999999999999875 6899999999999999999999999999999999999999999986
No 2
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=8.6e-62 Score=446.62 Aligned_cols=255 Identities=24% Similarity=0.345 Sum_probs=242.7
Q ss_pred CCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCC
Q 020817 59 FDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFE 135 (321)
Q Consensus 59 ~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~ 135 (321)
+|+|| ||++|+++||+|++ |++|.+|+++.+||+|+|++|+++|+|++++|+|+|+||.+|||+++|||++
T Consensus 1 lk~tp------l~~~h~~~GA~~~~~~G~e~P~~y~~~~~E~~a~r~~~gl~D~S~~~~i~v~G~Da~~~L~~~~t~di~ 74 (278)
T d1wosa2 1 MKRTP------LFEKHVELGAKMVDFAGWEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFS 74 (278)
T ss_dssp CBCCT------THHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCCT
T ss_pred CCCCc------cHHHHHHcCCEEEEECCEEeccccCCHHHHHHHHHhCeEEEeCCCeEEEEEEcCchHhhhhhhcccccc
Confidence 68889 99999999999875 5699999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHH
Q 020817 136 ILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQ 214 (321)
Q Consensus 136 ~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~ 214 (321)
.+++|+++|+++||++|+|+ |.+++++.+++|++++++.....++.|++++.. ..+|+++|+|+++++|+|+||+|++
T Consensus 75 ~l~~g~~~~t~~l~~~G~i~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~i~d~t~~~~~l~vqGP~S~~ 153 (278)
T d1wosa2 75 SLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSK-NFDVEVSNISDTTALIAFQGPKAQE 153 (278)
T ss_dssp TCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCT-TSSCEEEECGGGEEEEEEESTTHHH
T ss_pred ccCccceeeeeccCcCcceEEeeccccccchheeccccccchhhhhhhhhcccc-cccccceeecccceeeEecchHHHH
Confidence 99999999999999999999 666777899999999999999999999998865 4589999999999999999999999
Q ss_pred HHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhC----CCcccCHHHHHHHHHH
Q 020817 215 VMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ----GAVPMGSNAWEKLRII 290 (321)
Q Consensus 215 vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a----G~~~~G~~A~~slRiE 290 (321)
+|++++..+++++||+++....+.|.++++.|++|+||+||||++|.+.+..||++|+++ |++|+|.+|+++||||
T Consensus 154 ~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~tGe~G~ei~~~~~~~~~l~~~l~~~g~~~g~~~~G~~a~~~lRiE 233 (278)
T d1wosa2 154 TLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGRPAGLGARDVCRLE 233 (278)
T ss_dssp HHGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHH
T ss_pred HHHhhccccccccccccccceeecCccceEeccCCCCCCcceeecchhhHHHHHHHHHhcccccccccCccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999965 6799999999999999
Q ss_pred hcCCCCCCCCCCCcchhhcCCcccccCCCC
Q 020817 291 KGRPAPGKELTNEFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 291 ~G~~~~g~d~~~~~~P~E~gL~~~V~f~KG 320 (321)
+|+|.||.|++++++|+|+||+++|+|+|+
T Consensus 234 ~g~~~~g~d~~~~~~P~E~gl~~~v~~~k~ 263 (278)
T d1wosa2 234 ATYLLYGQDMDENTNPFEVGLSWVVKLNKD 263 (278)
T ss_dssp TTCCCBTTTBCTTSCGGGGTCGGGCCTTSC
T ss_pred cccccCCCcCCCCCCHHHCCCccccCCCCC
Confidence 999999999999999999999999999995
No 3
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00 E-value=1.8e-61 Score=451.08 Aligned_cols=258 Identities=22% Similarity=0.267 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCcchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccC
Q 020817 57 LPFDLSPPPIDHDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN 133 (321)
Q Consensus 57 r~~r~sp~~~~~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~d 133 (321)
+.+|+|| ||++|+++||+|++ |++|.+|+++.+||+|+|++||++|+|+|++|+|+|+||.+|||+++|||
T Consensus 1 ~~~r~tp------l~~~h~~~gA~~~~~~G~~~P~~y~~~~~E~~a~R~~~glfD~S~~~~i~v~G~da~~~L~~l~t~~ 74 (310)
T d1v5va2 1 QMVKRVH------IFDWHKEHARKIEEFAGWEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDALKFLQYVTTND 74 (310)
T ss_dssp CCCBCCT------THHHHHHHCSEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred CCcccch------HHHHHHHCCCEEEeecCEeccccCccHHHHHHHHHhCeeEEECCCcEEEEEEcCchhhhhhhccccc
Confidence 3589999 99999999999975 77999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHHHccc-----CCCCeEEEEecCcEEEEEE
Q 020817 134 FEILREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVF-----FADKVEIQDITKQTCLFVV 207 (321)
Q Consensus 134 v~~l~~G~~~~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~-----~~~~V~i~d~t~~~~~l~v 207 (321)
|+++++|+++||++||++|+|+ |.++.++.++.|+++++++....+..|+..+.. ...+|+|.|+|+++++|+|
T Consensus 75 i~~l~~g~~~yt~~ln~~Ggi~~D~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~i~d~t~~~~~l~l 154 (310)
T d1v5va2 75 ISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAV 154 (310)
T ss_dssp TTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTSCCCCEEEECTTTEEEEEE
T ss_pred cchhhhhhccceeeecCCCceeeeeeeeecchhhhhccccchhHHHHHHHhhhchhhhhcccccceeEEeccCccceech
Confidence 9999999999999999999999 556667899999999999988888877654321 2347999999999999999
Q ss_pred eCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcc--------------cCHHHHHHHHHh
Q 020817 208 VGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSP--------------AAAGSVWETLLS 273 (321)
Q Consensus 208 ~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~--------------~~a~~l~~~L~~ 273 (321)
|||+|+++|++++..++.++|+++++.+.+++++|++.|++|+||+|||||||. +++..||+.|++
T Consensus 155 qGP~S~~lL~~l~~~~~~~~~~~~~~~~~~~g~~v~i~R~g~tGe~G~Ei~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~ 234 (310)
T d1v5va2 155 QGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILE 234 (310)
T ss_dssp ESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCCCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhhhhhcccchhhheeeeccCccceeeccccCCCCeEEEEecccccccccccccccHHHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999999999999975 678999999998
Q ss_pred CC----CcccCHHHHHHHHHHhcCCCCCCCCCC---------CcchhhcCCcccccCCCC
Q 020817 274 QG----AVPMGSNAWEKLRIIKGRPAPGKELTN---------EFNVLEAGLWNSISLDKG 320 (321)
Q Consensus 274 aG----~~~~G~~A~~slRiE~G~~~~g~d~~~---------~~~P~E~gL~~~V~f~KG 320 (321)
+| ++|+|+.|+++||||||||.||+|+++ +++|+|+||+|+|+|+|+
T Consensus 235 aG~~~g~~p~G~~A~d~lRiE~G~~~~g~d~~~~~~~~~~~~~~tP~E~gl~~~v~~~k~ 294 (310)
T d1v5va2 235 EGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWDKD 294 (310)
T ss_dssp HHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTTSC
T ss_pred cChhcCCEEechhHhHHHHHHcCccccccccccccccccCcCCCChHHcCCccccCCCCC
Confidence 76 599999999999999999999999997 789999999999999994
No 4
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.6e-60 Score=435.80 Aligned_cols=250 Identities=17% Similarity=0.247 Sum_probs=225.7
Q ss_pred cchHHHHHHcCCeEec---CCcceeeCChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCC-CCCcEE
Q 020817 68 HDLLETVKSEGAKISG---EGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEIL-REGQGC 143 (321)
Q Consensus 68 ~~l~~~~~~~GA~f~~---~~~p~~f~~~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l-~~G~~~ 143 (321)
||||++|+++||+|++ |.+|.+|+++.+||+|+|++|||+|+|++++|+|+|+||.+|||+++|||+..+ ++|+++
T Consensus 2 Tpl~~~h~~~GA~~~~~~G~~~P~~y~~~~~E~~a~r~~~gl~D~S~~~~i~v~G~Da~~~L~~l~t~di~~~~~~G~~~ 81 (274)
T d1vloa2 2 TPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKAL 81 (274)
T ss_dssp CTTHHHHHHTTCEEEEETTEEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEE
T ss_pred CcchHHHHHCCCEEEEECCEEeccccCChHHHHHHHHhCceEEECCCeEEEEEeCcccHHHhhhhhcCccccccccchhe
Confidence 5599999999999976 559999999999999999999999999999999999999999999999999765 569999
Q ss_pred EEEEeCCCCcEE-EEEEEEEeCCeEEEEeCCcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccC
Q 020817 144 DTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLG 222 (321)
Q Consensus 144 ~t~~ln~kG~i~-d~~~~~~~~d~~~L~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~ 222 (321)
||++||++|+|+ |.++.+..+|.|++++++...+.++.|+++++. .++.+.++|+++++|+|+||+|+++|+++...
T Consensus 82 yt~~ln~~G~i~~D~~v~r~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~t~~~~~l~vqGP~s~~vl~~~~~~ 159 (274)
T d1vloa2 82 YSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAE--PFGIEITVRDDLSMIAVQGPNAQAKAATLFND 159 (274)
T ss_dssp EEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHG--GGTCEEEECTTEEEEEEESTTHHHHHHTTCCH
T ss_pred eeeccCCCccEEEeccccccCCCcceeccchhhHHHHHHHHHHhcc--cccccccCccchHhhhhhhHhhhhhhhccccc
Confidence 999999999999 555566789999999999999999999999874 35677789999999999999999999998764
Q ss_pred CCCCCCCcceEEEEECCeeEEEEecCcCCCCeEEEEEcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCC
Q 020817 223 DLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTN 302 (321)
Q Consensus 223 dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge~G~el~~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~ 302 (321)
...++++.......+.+.+|++.|++|+||+||||++|.+++..||++|+++|++|+|..|+++||||+|+|.||+|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~r~~~tGe~G~Ei~~~~~~~~~l~~~L~~~G~~~~G~~a~~~lRiEaG~~~~g~d~~~ 239 (274)
T d1vloa2 160 AQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEMDE 239 (274)
T ss_dssp HHHHHHTTCCSSBEEEETTEEEECCCSSSSCEEEEEEEHHHHHHHHHHHHHTTCEECCHHHHHHHHHHTTCCCBTTTBCT
T ss_pred hhhhcccccccccccccceEEEEecCCCCCCeeEeecCHHHHHHHHHHHHHcCCCccCcchhhHHHHhCCCCCcccccCC
Confidence 43333333334445677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhcCCcccccCCC
Q 020817 303 EFNVLEAGLWNSISLDK 319 (321)
Q Consensus 303 ~~~P~E~gL~~~V~f~K 319 (321)
+++|+|+||+++|+|+|
T Consensus 240 ~~~P~E~gL~~~v~~~~ 256 (274)
T d1vloa2 240 TISPLAANMGWTIAWEP 256 (274)
T ss_dssp TSCGGGTTCGGGCCCCS
T ss_pred CCCHHHcCccceeCCCC
Confidence 99999999999998864
No 5
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.1e-40 Score=295.16 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=182.2
Q ss_pred hHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEEEEeCCeEEEEeC
Q 020817 93 DGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVS 172 (321)
Q Consensus 93 ~~~E~~a~r~~vgl~Dls~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~~~~~d~~~L~~~ 172 (321)
++.|..++|.+++++|||++++|+|+|+||.+|||+|+||||+++++|+++||++||+||||+++++++..++.++|+++
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~~t~~ln~kGri~~d~~i~~~~~~~~l~~~ 85 (241)
T d1vlya2 6 PRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIER 85 (241)
T ss_dssp CCCCCCGGGCCSEEEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCcCccccCCeeEEECCCceEEEEECCCHHHHHhHHhhhcccccCCCCEEeeeeecccCeEEEEEEEeeccccceeehh
Confidence 34556688999999999999999999999999999999999999999999999999999999988888888999999999
Q ss_pred CcchHHHHHHHHHcccCCCCeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEECCeeEEEEecCcCCC
Q 020817 173 PLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISE 252 (321)
Q Consensus 173 ~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i~g~~v~i~R~~~~Ge 252 (321)
.+..+.+..||++|..+ .+|+|++ ++++.+++|+||+++++|+++........ ....... ...+.+. ..++
T Consensus 86 ~~~~~~~~~~l~~~~~~-~~v~i~~-~~~~~~~~l~gp~a~~~l~~~~~~~~~~~----~~~~~~~--~~~~~~~-~~~~ 156 (241)
T d1vlya2 86 RSVREPQLTELKKYAVF-SKVTIAP-DDERVLLGVAGFQARAALANLFSELPSKE----KQVVKEG--ATTLLWF-EHPA 156 (241)
T ss_dssp HHHHHHHHHHHHTTCSS-SSCEEEE-ECSSEEEEEESTTHHHHHHTTSSCCCBTT----BCEEEET--TEEEEEE-CSSS
T ss_pred hhhhHHHHHHHhhhccc-ceeeeec-chhheeeeecCccHHHHHHhccccccccc----cceeeee--eeeeeec-cCCC
Confidence 99999999999999985 4899987 56789999999999999998875432221 1111112 2222332 2355
Q ss_pred CeEEEEEcccCHHHHHHHHHhCCCcccCHHHHHHHHHHhcCCCCCCCCCCCcchhhcCCcc--cccCCCCC
Q 020817 253 EGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWN--SISLDKGS 321 (321)
Q Consensus 253 ~G~el~~~~~~a~~l~~~L~~aG~~~~G~~A~~slRiE~G~~~~g~d~~~~~~P~E~gL~~--~V~f~KG~ 321 (321)
.+++++++.+.+..+|+.+. .+..++|..+|+++|||+|+|.|+.|+++.++|+|+||++ +|||+||-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lRie~g~p~~~~e~~~~~~P~E~gLd~~~~Vsf~KGC 226 (241)
T d1vlya2 157 ERFLIVTDEATANMLTDKLR-GEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGC 226 (241)
T ss_dssp CEEEEEECHHHHHHHHHHHB-TTBEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSSSCC
T ss_pred cceeeeCCHHHHHHHHHHhh-hhccccchhHHHHHHHHcCCcccCccCCCCCcHHHcCchhccCCCCCCCC
Confidence 56777777777777776654 4678999999999999999999999999999999999975 69999993
No 6
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.69 E-value=0.028 Score=42.36 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=35.6
Q ss_pred CCceEEEEEcchHHHHHHHccccCCCCCCCCcEEEEEEeCCCCcEEEEEEE
Q 020817 110 SHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA 160 (321)
Q Consensus 110 s~~~~i~V~G~dA~~fLq~l~t~dv~~l~~G~~~~t~~ln~kG~i~d~~~~ 160 (321)
|.-+.|+|+|+++.+.++.++...-. .++.+..+..+ ..+|.++|..++
T Consensus 14 saIaVIRiSG~~a~~i~~~~~~~~~~-~~~r~~~~~~i-~~~~~~iD~~lv 62 (117)
T d1xzpa3 14 GAIAILRLSGPDSWKIVQKHLRTRSK-IVPRKAIHGWI-HENGEDVDEVVV 62 (117)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSC-CCBTBCEEEEE-CCSSCCCCEEEE
T ss_pred ceEEEEEEECccHHHHHHHHhCcccc-cccceEEeecc-cccccccCcceE
Confidence 55689999999999999998865432 24556666554 567888865554
No 7
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.71 E-value=0.38 Score=35.76 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=52.8
Q ss_pred CcEEEEEEeCCChHHHHhhcccCCCCCCCC-cceEEEEECCe-----eEEEEe--cCcCCCCeEEEEEcccC--HHHHHH
Q 020817 200 KQTCLFVVVGPKSNQVMRDLNLGDLVGEAY-GTHRHYSVNGM-----PITVGV--GNVISEEGFSLLMSPAA--AGSVWE 269 (321)
Q Consensus 200 ~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~-~~~~~~~i~g~-----~v~i~R--~~~~Ge~G~el~~~~~~--a~~l~~ 269 (321)
...+++-|.||++.+++++++...-...|. .....+...+. -+...+ -|||||+=.||+|.... ...+.+
T Consensus 14 saIaVIRiSG~~a~~i~~~~~~~~~~~~~r~~~~~~i~~~~~~iD~~lv~~f~~P~S~TGEd~vEi~~HG~~~i~~~il~ 93 (117)
T d1xzpa3 14 GAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD 93 (117)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSCCCBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHHH
T ss_pred ceEEEEEEECccHHHHHHHHhCcccccccceEEeecccccccccCcceEEEecCccCccccceEEEEeccchhHHHHHHH
Confidence 457899999999999998876422111111 11112211221 223333 38999999999998653 466888
Q ss_pred HHHhCCCccc--CHHHHH
Q 020817 270 TLLSQGAVPM--GSNAWE 285 (321)
Q Consensus 270 ~L~~aG~~~~--G~~A~~ 285 (321)
.|...|++++ |....+
T Consensus 94 ~l~~~g~R~A~pGEFT~R 111 (117)
T d1xzpa3 94 LFLKSGARMAEPGEFTKR 111 (117)
T ss_dssp HHHTTTCEECCTTHHHHH
T ss_pred HhhhcCccccCCchhhHH
Confidence 8888887554 444433
No 8
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.15 E-value=0.28 Score=40.12 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE---CC---eeEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV---NG---MPITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i---~g---~~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.+.+.|++ .+++|.|.||.|.+.|+.++..|++.++.+......+ .| ..+.+.|. +..+-+.++.....
T Consensus 16 ~~~l~~L~-~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~~t~~ln~kGri~~d~~i~~~----~~~~~l~~~~~~~~ 90 (241)
T d1vlya2 16 PLTLMTLD-DWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD----GDGFAWIERRSVRE 90 (241)
T ss_dssp CSEEEECT-TEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEE----TTEEEEEEEHHHHH
T ss_pred CeeEEECC-CceEEEEECCCHHHHHhHHhhhcccccCCCCEEeeeeecccCeEEEEEEEeec----cccceeehhhhhhH
Confidence 48898995 5999999999999999999989998877666554433 22 25667775 45788999999999
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+++.|...
T Consensus 91 ~~~~~l~~~ 99 (241)
T d1vlya2 91 PQLTELKKY 99 (241)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhh
Confidence 999988764
No 9
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.11 E-value=0.55 Score=40.51 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=59.6
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
.|-|-|+|. ++.|.|.||.+.+.|+.++..+++.++.+.+..+.+ ++. ++.+.|. ++..|.++++.....
T Consensus 44 ~~glfD~S~-~~~i~v~G~da~~~L~~l~t~~i~~l~~g~~~yt~~ln~~Ggi~~D~~v~r~---~~~~~~~~~~~~~~~ 119 (310)
T d1v5va2 44 AVGIFDVSH-MGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNM---GNNEYLMICDSDAFE 119 (310)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHH
T ss_pred CeeEEECCC-cEEEEEEcCchhhhhhhccccccchhhhhhccceeeecCCCceeeeeeeeec---chhhhhccccchhHH
Confidence 688999985 799999999999999999999998888777665544 343 5677775 688999999888777
Q ss_pred HHHHH
Q 020817 266 SVWET 270 (321)
Q Consensus 266 ~l~~~ 270 (321)
.++..
T Consensus 120 ~~~~~ 124 (310)
T d1v5va2 120 KLYAW 124 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 10
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=91.56 E-value=0.73 Score=38.98 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=62.0
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-|-|+|. +..+.|.||.+.+.|+.++..++++++.+.+..+.+ +++ ++.+.|. ++..|.+.++.....
T Consensus 42 ~~gl~D~S~-~~~i~v~G~Da~~~L~~~~t~di~~l~~g~~~~t~~l~~~G~i~~d~~v~~~---~~~~~~~~~~~~~~~ 117 (278)
T d1wosa2 42 SVGMFDVSH-MGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKV---SPDEALMVVNAANIE 117 (278)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CeEEEeCCC-eEEEEEEcCchHhhhhhhccccccccCccceeeeeccCcCcceEEeeccccc---cchheeccccccchh
Confidence 688899984 799999999999999999999999888877766543 232 4666665 678898888888887
Q ss_pred HHHHHHHhC
Q 020817 266 SVWETLLSQ 274 (321)
Q Consensus 266 ~l~~~L~~a 274 (321)
.+++.+...
T Consensus 118 ~~~~~~~~~ 126 (278)
T d1wosa2 118 KDFNWIKSH 126 (278)
T ss_dssp HHHHHHHTT
T ss_pred hhhhhhhcc
Confidence 777766653
No 11
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=87.78 E-value=1.7 Score=36.40 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCC-CCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGE-AYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAA 264 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~-~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a 264 (321)
.|-|-|+|. +..|.|.||.|.+.|+.++..|+..+ +.+.+..+-+ +++ ++.+.|. ++.-|.++++....
T Consensus 40 ~~gl~D~S~-~~~i~v~G~Da~~~L~~l~t~di~~~~~~G~~~yt~~ln~~G~i~~D~~v~r~---~~~~~~~~~~~~~~ 115 (274)
T d1vloa2 40 DAGMFDVSH-MTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYF---TEDFFRLVVNSATR 115 (274)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGH
T ss_pred CceEEECCC-eEEEEEeCcccHHHhhhhhcCccccccccchheeeeccCCCccEEEecccccc---CCCcceeccchhhH
Confidence 578899984 79999999999999999988888653 5555554332 222 5677775 68899999998888
Q ss_pred HHHHHHHHh
Q 020817 265 GSVWETLLS 273 (321)
Q Consensus 265 ~~l~~~L~~ 273 (321)
..++..+..
T Consensus 116 ~~~~~~l~~ 124 (274)
T d1vloa2 116 EKDLSWITQ 124 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 12
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=80.39 E-value=4.3 Score=34.64 Aligned_cols=74 Identities=26% Similarity=0.309 Sum_probs=53.7
Q ss_pred CeEEEEecCcEEEEEEeCCChHHHHhhcccCCCCCCCCcceEEEEE----CCe--eEEEEecCcCCCCeEEEEEcccCHH
Q 020817 192 KVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSV----NGM--PITVGVGNVISEEGFSLLMSPAAAG 265 (321)
Q Consensus 192 ~V~i~d~t~~~~~l~v~GP~a~~vL~~l~~~dl~~~~~~~~~~~~i----~g~--~v~i~R~~~~Ge~G~el~~~~~~a~ 265 (321)
+|-|-|+|. ++.|-|.||.+.+.|+.++..+++. +.+....+.+ +++ ++.+.|. ++.-|.|.+......
T Consensus 72 ~vglfD~S~-~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~---~~~~f~l~~~~~~~~ 146 (315)
T d1pj5a4 72 AVAMYDMTP-LKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARL---SEDTFQLGANGNIDT 146 (315)
T ss_dssp SCEEEECTT-SCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEECSSHHHH
T ss_pred hcceecccc-ceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeec---ccccccccccchhhh
Confidence 688999985 7999999999999999998888864 4455554433 332 5677775 678898887766555
Q ss_pred HHHHH
Q 020817 266 SVWET 270 (321)
Q Consensus 266 ~l~~~ 270 (321)
..+..
T Consensus 147 ~~~~~ 151 (315)
T d1pj5a4 147 AYFER 151 (315)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 44433
Done!