BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020820
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/297 (47%), Positives = 196/297 (65%), Gaps = 8/297 (2%)
Query: 23 NFQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVRE 82
+F +D +AG V T VAPIER KLLLQ Q ++ I S +++KG++DC+ R +E
Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI--SAEKQYKGIIDCVVRIPKE 63
Query: 83 EGILSLWRGNGSSVLRYYPSVALNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAA 142
+G LS WRGN ++V+RY+P+ ALNF+ KD Y+ + G F + N +G AA
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL-GGVDRHKQFWRYFAGNLASGGAA 122
Query: 143 GCTTLILIYPLDIAHTRLAADVGRTDA-RQFRGFCHFLTTIFKKDGIRGVYRGLPASLQG 201
G T+L +YPLD A TRLAADVG+ A R+F G + +T IFK DG+RG+Y+G S+QG
Sbjct: 123 GATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG 182
Query: 202 MVVHRGLYFGGFDTMKEVLSEESKPELALWKRWVVAQAVTTSAGLLSYPLDTVRRRMMMQ 261
++++R YFG +DT K +L + + + W++AQ VT AGL+SYP DTVRRRMMMQ
Sbjct: 183 IIIYRAAYFGVYDTAKGMLPDPKNVHIIV--SWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240
Query: 262 SGLE--QPMYHNTLECWRTIYRKEGVTSFYRGAVSNMFRSTGAAAILVLYDEVKKFM 316
SG + MY T++CWR I + EG +F++GA SN+ R G A +LVLYDE+KKF+
Sbjct: 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 125/276 (45%), Gaps = 11/276 (3%)
Query: 41 IVAPIERAKLLLQTQ-ESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRY 99
I P++ AK+ LQ Q ES + + +++G+L I VR EG SL+ G + + R
Sbjct: 18 ITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQ 77
Query: 100 YPSVALNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTR 159
++ L D + G+ +G + +AG+ G + + P D+ R
Sbjct: 78 MSFASVRIGLYDSVKQFYTKGSEH------AGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131
Query: 160 LAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEV 219
A R+++ TI +++GIRG+++G ++ + +D +K+
Sbjct: 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT 191
Query: 220 LSEESKPELALWKRWVVAQAVTTSAGLLSYPLDTVRRRMMMQSGLEQPMYHNTLECWRTI 279
L + + L + A +++ P+D V+ R M S L Q YH+ C T+
Sbjct: 192 LLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR-YMNSALGQ--YHSAGHCALTM 248
Query: 280 YRKEGVTSFYRGAVSNMFR-STGAAAILVLYDEVKK 314
RKEG +FY+G + + R + + V Y+++K+
Sbjct: 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 9/189 (4%)
Query: 133 SANFVAGAAAGCTTLILIYPLDIAHTRL-----AADVGRTDAR-QFRGFCHFLTTIFKKD 186
+ F+ A C ++ +PLD A RL + + RT A Q+RG + T+ + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 187 GIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEESKPELALWKRWVVAQAVTTSAGL 246
G R +Y GL A LQ + + G +D++K+ ++ S+ + R + A
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVA 120
Query: 247 LSYPLDTVRRRMMMQS-GLEQPMYHNTLECWRTIYRKEGVTSFYRGAVSNMFRSTGA-AA 304
++ P D V+ R Q+ Y +T+E ++TI R+EG+ ++G N+ R+ A
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 305 ILVLYDEVK 313
LV YD +K
Sbjct: 181 ELVTYDLIK 189
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 16/173 (9%)
Query: 28 LMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILS 87
L+AG+ G + P + K+ Q Q G RR++ ++ REEGI
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQAR-----AGGGRRYQSTVEAYKTIAREEGIRG 162
Query: 88 LWRGNGSSVLRYYPSVALNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAAGCTTL 147
LW+G +V R DL ++ L N +F + AG T
Sbjct: 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-----MTDDLPCHFTSAFGAGFCTT 217
Query: 148 ILIYPLDIAHTR-LAADVGRTDARQFRGFCHFLTTIFKKDGIRGVYRGLPASL 199
++ P+D+ TR + + +G Q+ H T+ +K+G R Y+G S
Sbjct: 218 VIASPVDVVKTRYMNSALG-----QYHSAGHCALTMLRKEGPRAFYKGFMPSF 265
>pdb|3O14|A Chain A, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
pdb|3O14|B Chain B, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
Length = 223
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 94 SSVLRYYPSVALNFSLKDLYRNVL--------RNGNYQDGTSFMSGTSANFVAGAAAGCT 145
+S++RY P + D + +G+Y GT + + + V G+A GCT
Sbjct: 45 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDEHGDYPAGTYVRNPPTTSHVPGSAEGCT 104
Query: 146 TLILIYPLDIA 156
+ ++ D A
Sbjct: 105 IFVKLWQFDPA 115
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 37 FVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGI 85
F+ +I++ +E A Q QE+ L + G GR K + I R GI
Sbjct: 38 FIQSIISTVEPA----QRQEATLVVGGDGRFYMKEAIQLIVRIAAANGI 82
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State
Analog Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State
Analog Complex
Length = 561
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 37 FVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGI 85
F+ +I++ +E A Q QE+ L + G GR K + I R GI
Sbjct: 38 FIQSIISTVEPA----QRQEATLVVGGDGRFYMKEAIQLIVRIAAANGI 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,288,977
Number of Sequences: 62578
Number of extensions: 365946
Number of successful extensions: 730
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 13
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)