Query 020820
Match_columns 321
No_of_seqs 170 out of 1607
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.4E-58 8.2E-63 401.1 23.1 283 26-317 3-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.8E-57 6.1E-62 394.8 25.5 290 21-316 4-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 6.1E-36 2.1E-40 259.4 19.3 188 130-317 5-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.7E-36 1.6E-40 260.6 16.9 183 134-317 3-193 (303)
5 2a3d_A Protein (de novo three- 22.5 1E+02 0.0035 18.2 3.2 15 44-58 10-24 (73)
6 2acm_A Mucin-1; auto-catalytic 22.1 29 0.00098 21.0 0.8 20 70-89 40-59 (66)
7 2bnk_A Early protein GP16.7; D 19.5 78 0.0027 18.9 2.3 45 247-292 21-65 (67)
8 1y9i_A Low temperature require 17.8 1.3E+02 0.0045 22.8 3.8 48 102-149 112-159 (178)
9 3f2e_A SIRV coat protein; four 16.6 1.2E+02 0.0041 19.3 2.8 34 267-300 6-43 (100)
10 3tgu_G UQCRQ, mitochondrial ub 15.8 1.1E+02 0.0036 19.9 2.5 38 186-223 32-69 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-58 Score=401.14 Aligned_cols=283 Identities=22% Similarity=0.387 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHhccccchhc-cCCCCCccchHHHHHHHHhhhccccccccchhhhhhhchhhh
Q 020820 26 RDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIV-GSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYYPSVA 104 (321)
Q Consensus 26 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 104 (321)
..+++|++||+++.+++||||++|+|+|++....... .....+|.+.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999986532100 011224889999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCCccchhHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccCCCccccCCcHHHHHHHHHh
Q 020820 105 LNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTDARQFRGFCHFLTTIFK 184 (321)
Q Consensus 105 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~i~~ 184 (321)
++|.+|+.+++.+.+... ..+....+++|++||+++.++++|+|++|+|+|++........|.++++++++|++
T Consensus 83 i~f~~ye~~k~~~~~~~~------~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~ 156 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE------HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAR 156 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS------SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc------CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHH
Confidence 999999999998865421 13456789999999999999999999999999998643344578999999999999
Q ss_pred hhCcccccccchhhhHhHHHhHhhHHhHHHHHHHHhcccCCChhhHHHHHHHHHHHHHhhccccccHHHHHHHHhhccCC
Q 020820 185 KDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEESKPELALWKRWVVAQAVTTSAGLLSYPLDTVRRRMMMQSGL 264 (321)
Q Consensus 185 ~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~ik~r~q~~~~~ 264 (321)
+||++|||||+.+++++.++..+++|.+||.+++.+.+....+.+....+++|++||++++++++|+|+||+|||.+..
T Consensus 157 ~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~- 235 (303)
T 2lck_A 157 EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL- 235 (303)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-
Confidence 9999999999999999999999999999999999987654445567788999999999999999999999999999865
Q ss_pred CCCCCCcHHHHHHHHHHhhChhhhccchhhhHhhhcchhhh-HHhHHHHHHhhc
Q 020820 265 EQPMYHNTLECWRTIYRKEGVTSFYRGAVSNMFRSTGAAAI-LVLYDEVKKFMN 317 (321)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~-~~~~e~~~~~~~ 317 (321)
..|.++++|+++|+++||++|||||+.|+++|.+|..++ |.+||.+|+++.
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999 999999998875
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-57 Score=394.84 Aligned_cols=290 Identities=48% Similarity=0.881 Sum_probs=244.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHhccccchhccCCCCCccchHHHHHHHHhhhccccccccchhhhhhhc
Q 020820 21 VTNFQRDLMAGAVMGGFVHTIVAPIERAKLLLQTQESNLAIVGSGRRRFKGMLDCIARTVREEGILSLWRGNGSSVLRYY 100 (321)
Q Consensus 21 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~ 100 (321)
..+.+..+++|++||+++.++++|+|++|+|+|++...... .....|.+.++++++++++||++|||||+.+++++.+
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI--SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC--CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc--ccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 35678899999999999999999999999999998643111 1122488999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhCCCCCCCCCccchhHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccCC-CccccCCcHHHHH
Q 020820 101 PSVALNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGR-TDARQFRGFCHFL 179 (321)
Q Consensus 101 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~iktr~q~~~~~-~~~~~~~~~~~~~ 179 (321)
+..+++|.+||.+++.+........ .........+++|++||+++.++++|+|+||+|+|++... .....|.++++++
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~-~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHK-QFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCccc-chHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 9999999999999996543222111 1122345688999999999999999999999999998532 2245789999999
Q ss_pred HHHHhhhCcccccccchhhhHhHHHhHhhHHhHHHHHHHHhcccCCChhhHHHHHHHHHHHHHhhccccccHHHHHHHHh
Q 020820 180 TTIFKKDGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEESKPELALWKRWVVAQAVTTSAGLLSYPLDTVRRRMM 259 (321)
Q Consensus 180 ~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~ik~r~q 259 (321)
++|+++||++|||||+.+++++.++.++++|.+||.+++.+.+. .+.+....+.+|.++|++++++++|+||||+|||
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999999999999987543 2345677889999999999999999999999999
Q ss_pred hccCC--CCCCCCcHHHHHHHHHHhhChhhhccchhhhHhhhcchhhh-HHhHHHHHHhh
Q 020820 260 MQSGL--EQPMYHNTLECWRTIYRKEGVTSFYRGAVSNMFRSTGAAAI-LVLYDEVKKFM 316 (321)
Q Consensus 260 ~~~~~--~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~-~~~~e~~~~~~ 316 (321)
++... ....|.++++|+++|+++||++|||||+.|+++|.. ..++ |.+||.+|+++
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~-~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM-GGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHH-HHHHHHHHHHTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhc-cceeeehHHHHHHhhC
Confidence 87543 124799999999999999999999999999999965 5667 99999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.1e-36 Score=259.39 Aligned_cols=188 Identities=19% Similarity=0.306 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccCC---CccccCCcHHHHHHHHHhhhCcccccccchhhhHhHHHhH
Q 020820 130 SGTSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGR---TDARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHR 206 (321)
Q Consensus 130 ~~~~~~~~~g~~ag~~~~~v~~P~d~iktr~q~~~~~---~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 206 (321)
.+....+++|++||+++.++++|+|++|+|+|++... .....|+++++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 3456789999999999999999999999999998521 1234789999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHh-cccCCC-h--hhHHHHHHHHHHHHHhhccccccHHHHHHHHhhccCCC--CCCCCcHHHHHHHHH
Q 020820 207 GLYFGGFDTMKEVL-SEESKP-E--LALWKRWVVAQAVTTSAGLLSYPLDTVRRRMMMQSGLE--QPMYHNTLECWRTIY 280 (321)
Q Consensus 207 ~~~~~~y~~~~~~~-~~~~~~-~--~~~~~~~~~~~~ag~~~~~~~~Pld~ik~r~q~~~~~~--~~~~~~~~~~~~~i~ 280 (321)
+++|.+||.+++.+ .+.+.. + ......+++|++||++++++++|+|+||+|+|++.... ...|.+.++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999954 332211 1 34567899999999999999999999999999985432 256899999999999
Q ss_pred HhhChhhhccchhhhHhhhcchhhh-HHhHHHHHHhhc
Q 020820 281 RKEGVTSFYRGAVSNMFRSTGAAAI-LVLYDEVKKFMN 317 (321)
Q Consensus 281 ~~eG~~~lyrG~~~~~~~~~~~~~~-~~~~e~~~~~~~ 317 (321)
++||++|||||+.|+++|.+|..++ |.+||.+|+.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 999999999764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-36 Score=260.65 Aligned_cols=183 Identities=26% Similarity=0.459 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhhcccCCC------ccccCCcHHHHHHHHHhhhCcccccccchhhhHhHHHhHh
Q 020820 134 ANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRT------DARQFRGFCHFLTTIFKKDGIRGVYRGLPASLQGMVVHRG 207 (321)
Q Consensus 134 ~~~~~g~~ag~~~~~v~~P~d~iktr~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 207 (321)
..+++|++||+++.++++|+|++|+|+|++.... ....|.++++++++|+++||+++||||+.+.+++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999985321 1347899999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhcccCCChhhHHHHHHHHHHHHHhhccccccHHHHHHHHhhccCC-CCCCCCcHHHHHHHHHHhhChh
Q 020820 208 LYFGGFDTMKEVLSEESKPELALWKRWVVAQAVTTSAGLLSYPLDTVRRRMMMQSGL-EQPMYHNTLECWRTIYRKEGVT 286 (321)
Q Consensus 208 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~i~~~eG~~ 286 (321)
++|.+||.+++.+.+..+ ..+....+++|.+||++++++++|+|+||+|+|++... ....|.+.++++++|+++||++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 999999999999876522 45678899999999999999999999999999998643 2257999999999999999999
Q ss_pred hhccchhhhHhhhcchhhh-HHhHHHHHHhhc
Q 020820 287 SFYRGAVSNMFRSTGAAAI-LVLYDEVKKFMN 317 (321)
Q Consensus 287 ~lyrG~~~~~~~~~~~~~~-~~~~e~~~~~~~ 317 (321)
|||||+.|+++|.+|..++ |.+||.+|+.+.
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999875
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.51 E-value=1e+02 Score=18.22 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=11.2
Q ss_pred hHHHHHHHHHhcccc
Q 020820 44 PIERAKLLLQTQESN 58 (321)
Q Consensus 44 Pld~ik~~~q~~~~~ 58 (321)
-+..||+|+|.-+.+
T Consensus 10 rlaaiktrlqalggs 24 (73)
T 2a3d_A 10 RLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHhcCc
Confidence 355789999987654
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.05 E-value=29 Score=20.97 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=16.6
Q ss_pred cchHHHHHHHHhhhcccccc
Q 020820 70 KGMLDCIARTVREEGILSLW 89 (321)
Q Consensus 70 ~~~~~~~~~i~~~~G~~gly 89 (321)
++..+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45678889999999998875
No 7
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=19.46 E-value=78 Score=18.91 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=29.1
Q ss_pred ccccHHHHHHHHhhccCCCCCCCCcHHHHHHHHHHhhChhhhccch
Q 020820 247 LSYPLDTVRRRMMMQSGLEQPMYHNTLECWRTIYRKEGVTSFYRGA 292 (321)
Q Consensus 247 ~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~ 292 (321)
+--|+|.|---. .++-.....-.++.+.-|.-|+-|.-+.+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 457888886533 333222122345566668889999999999995
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=17.81 E-value=1.3e+02 Score=22.85 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=26.3
Q ss_pred hhhhhhhHHHHHHHHHhCCCCCCCCCccchhHHHHHHHHHHHHHHHHh
Q 020820 102 SVALNFSLKDLYRNVLRNGNYQDGTSFMSGTSANFVAGAAAGCTTLIL 149 (321)
Q Consensus 102 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v 149 (321)
...+.|..||..|...-.............+...++||+.|++++.++
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 344567777776653222111111112446777888998888765443
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.65 E-value=1.2e+02 Score=19.30 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=25.1
Q ss_pred CCCCcHHHHHHHHHHhhCh----hhhccchhhhHhhhc
Q 020820 267 PMYHNTLECWRTIYRKEGV----TSFYRGAVSNMFRST 300 (321)
Q Consensus 267 ~~~~~~~~~~~~i~~~eG~----~~lyrG~~~~~~~~~ 300 (321)
+++.+.-+-+..++.+-|+ +..|.|+.....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 6777777777888888776 568999998887754
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.77 E-value=1.1e+02 Score=19.94 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=28.5
Q ss_pred hCcccccccchhhhHhHHHhHhhHHhHHHHHHHHhccc
Q 020820 186 DGIRGVYRGLPASLQGMVVHRGLYFGGFDTMKEVLSEE 223 (321)
Q Consensus 186 ~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 223 (321)
.|+...+|-+...++..+|...+.+.+|+..++.-...
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888999999999999998766543
Done!