BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020822
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG5|A Chain A, Solution Structure Of Rsgi Ruh-014, A Uba Domain From
Arabidopsis Cdna
Length = 73
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 272 VPAGQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQG 321
+P Q S+E+IQKLV+MGFD+TQVEVALAAAD DL VAVEIL SQ G
Sbjct: 19 LPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69
>pdb|1Z96|A Chain A, Crystal Structure Of The Mud1 Uba Domain
pdb|1Z96|B Chain B, Crystal Structure Of The Mud1 Uba Domain
Length = 40
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 283 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
+ +I +LVSMGFD + AL AA+GDL+VA L
Sbjct: 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 171 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 214
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 156 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 199
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 155 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 198
>pdb|1VEJ|A Chain A, Solution Structure Of Rsgi Ruh-016, A Uba Domain From
Mouse Cdna
Length = 74
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 284 EEIQKLVSMGFDKTQVEV-ALAAADGDLNVAVEIL 317
+E+++L ++GF + AL A DGD++ A+E+L
Sbjct: 31 QELEELKALGFANRDANLQALVATDGDIHAAIEML 65
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L + GFD+ V VAL++ D+ A E+L
Sbjct: 207 GAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELL 250
>pdb|2KNZ|A Chain A, Nmr Structure Of Cip75 Uba Domain
Length = 53
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 273 PAGQQGAVVSDEEIQKLVSMGFDKTQVEV-ALAAADGDLNVAVEIL 317
P G V +++++L SMGF + + AL A GD+N A+E L
Sbjct: 2 PLGSMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERL 47
>pdb|3S3Y|A Chain A, Crystal Structure An Tandem Cyanovirin-N Dimer, Cvn2l0
Length = 213
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 103 QVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIR 153
Q + T ++L H+ I Y G F T + SAI+ S L STC R
Sbjct: 90 QFVSTKINLDDHIANIDGTLKYELGKF----SQTCYNSAIQGSVLTSTCER 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,193
Number of Sequences: 62578
Number of extensions: 321693
Number of successful extensions: 723
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 13
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)