BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020822
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/324 (63%), Positives = 259/324 (79%), Gaps = 10/324 (3%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIG 60
M+ALVP+GSELERIMGSVR+ Y+T+LLAT+NA+LHLLIA L + PFY+ ++M+ECAIG
Sbjct: 84 MMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLMNECAIG 143
Query: 61 FSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILS 120
FSG++FS+IVIETSLSG SRSVFGLFN+PAK YP ILL++FQ+LMTNVSLLGHLCGILS
Sbjct: 144 FSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILS 203
Query: 121 GFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSS 180
GF+Y+YG FN LMPG+SF++ IES+S +S+ IR+PKFI+CTGGNPS YIPTYS QNT+SS
Sbjct: 204 GFSYSYGLFNFLMPGSSFFTTIESASWMSSFIRRPKFIMCTGGNPSSYIPTYSAQNTTSS 263
Query: 181 GLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTLSSSQSPV----HVDSNLQARLLD 236
G +GN W +LSSW+PQRE S+Q ++DSRFPGRGRTLS+++ P D NL ARLL+
Sbjct: 264 GFSTGNAWRSLSSWLPQREASNQSSEDSRFPGRGRTLSTARDPTAPAGETDPNLHARLLE 323
Query: 237 NSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQGAVVSDEEIQKLVSMGFDK 296
+SS +R + T + ++D RQ + A +P Q S+E+IQKLV+MGFD+
Sbjct: 324 DSSSPDR---LSDATVNTVADSRQAPIANAAV---LPQSQGRVAASEEQIQKLVAMGFDR 377
Query: 297 TQVEVALAAADGDLNVAVEILSQQ 320
TQVEVALAAAD DL VAVEIL Q
Sbjct: 378 TQVEVALAAADDDLTVAVEILMSQ 401
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIG 60
M +++ G LER +GS Y+ + +++LL+ VA F + CA+G
Sbjct: 85 MASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYLLLQFAVAE--FMDEPDFKRSCAVG 142
Query: 61 FSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILS 120
FSGV+F+L V+ ++ G F +P ++ + LV + S GHL GIL
Sbjct: 143 FSGVLFALKVLNNHYCPGGFVNILG-FPVPNRFACWVELVAIHLFSPGTSFAGHLAGILV 201
Query: 121 GFAYTYGFFNLLM 133
G YT G +M
Sbjct: 202 GLMYTQGPLKKIM 214
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIG 60
M++++ G +LER +GS Y+ + +++LL+ VA + + CA+G
Sbjct: 85 MVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVYLLLQFTVAEL--LNQPDFKRNCAVG 142
Query: 61 FSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILS 120
FSGV+F+L V+ ++ G F +P ++ LV S GHL GIL
Sbjct: 143 FSGVLFALKVLSNHYCPGGFVNILG-FPVPNRFACWAELVAIHFCTPGTSFAGHLAGILV 201
Query: 121 GFAYTYGFFNLLM 133
G YT G +M
Sbjct: 202 GLMYTQGPLKKIM 214
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1
Length = 318
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 8 GSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFS 67
G LER +GS Y+ + +++LL+ VA F + CA+GFSGV+F+
Sbjct: 92 GINLERRLGSRWFAYVITTFSVLTGVVYLLLQFAVAE--FMDEPDFKRSCAVGFSGVLFA 149
Query: 68 LIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYG 127
L V+ ++ G F +P ++ + LV + S GH GIL G YT G
Sbjct: 150 LKVLNNHYCPGGFVNILG-FPVPNRFACWVELVAIHLFSPGTSFAGHQAGILVGLMYTQG 208
Query: 128 FFNLLMPGTSFYSAIESS 145
+M + SS
Sbjct: 209 PLKKIMEACAGLGGFSSS 226
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 14/190 (7%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIG 60
M++++ G +LE+ +GS YI + +++LL+ A + + CA+G
Sbjct: 85 MVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVYLLLQFASAEL--MNQPDFKRNCAVG 142
Query: 61 FSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILS 120
FSGV+F+L V+ ++ G F +P ++ L S GHL GIL
Sbjct: 143 FSGVLFALKVLSNHYCPGGFVNILG-FPVPNRFACWAELAAIHFCTPGTSFAGHLAGILV 201
Query: 121 GFAYTYGFFNLLMPGTS--FYSAIESS------SLLSTCIRQPKFILCTGGNPSGYIPTY 172
G YT G +M + F S SS + Q ++ T G P Y TY
Sbjct: 202 GLMYTQGPLKKIMDACAGIFISNAGSSGQQYHFNNAGPSGYQNRY---TDGRPVNYEATY 258
Query: 173 SGQNTSSSGL 182
+ ++GL
Sbjct: 259 RNYDIYTAGL 268
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana
GN=At3g17611 PE=2 SV=1
Length = 334
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 1 MLALVPLGSELERIMGSVRMFYITI-LLATSNAILHLLIALLVAHIPFYRLQNVMDECAI 59
M++L+ G +LE MGS + L+ S + LL L+ + R +E A+
Sbjct: 96 MMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDR--AYYNEYAV 153
Query: 60 GFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGIL 119
GFSGV+F++ V+ S + S SV+G+ +P K+ L+L Q+ + N S LGHL GIL
Sbjct: 154 GFSGVLFAMKVVLNSQAEDYS-SVYGIL-VPTKYAAWAELILVQMFVPNASFLGHLGGIL 211
Query: 120 SGFAY 124
+G Y
Sbjct: 212 AGIIY 216
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIG 60
++AL P+ S+ ER+ G+VR + +LA AI L++ + P DE +G
Sbjct: 77 LVALQPIVSQFERVNGTVRTGIVLNILAVVTAIPWCLLS--IGFFP--------DEAVLG 126
Query: 61 FSGVIFSLI---VIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCG 117
S IFS + I S ++ L +P P+I LV+ +++ + S +GHL G
Sbjct: 127 SSAWIFSFMGYWAIRESSKQPTTQLAPNLV-VPTWLLPIIYLVVIAIVIPSSSFIGHLLG 185
Query: 118 ILSGFAYTYGFFNLLMPGTS 137
+++G+ G+ ++L+ +S
Sbjct: 186 LIAGWMMALGYLDVLIEPSS 205
>sp|Q4I4A4|RBD2_GIBZE Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620
/ FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1
Length = 267
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 42 VAHIPFYRLQNVMDECAIGFSGVIFSLIVIET-SLSGAQSRSVFGLFNIPAKWYPLILLV 100
VA++ R + +G S +F+L+ +E+ + V G NIP PLI+ +
Sbjct: 114 VAYVLIERCIFRANHGVLGASMWVFTLLAMESIQTYKSNPHFVIGSVNIPTWTTPLIMSL 173
Query: 101 LFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMP 134
+ L+ SLLGHLCGI G+ +G+ LL P
Sbjct: 174 VVAALIPGTSLLGHLCGIAIGYVAGFGYAKLLAP 207
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rbd2 PE=3 SV=2
Length = 251
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 1 MLALVPLGSELERIMGSVRMFYITILLAT-SNAILHLLIALLVAHIPFYRLQNVMDECAI 59
++L+P S+ E+ G++ +T++ T I+HL++ Y D +I
Sbjct: 76 FVSLLPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIV---------YHFFLRKDYVSI 126
Query: 60 -GFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGI 118
G SG F+ I S + S F LF+IPA +P+I L++ +L+ S +GH G
Sbjct: 127 AGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPKASFIGHASGA 186
Query: 119 LSGFA 123
+ G+
Sbjct: 187 VMGYC 191
>sp|Q6NTF9|RHBD2_HUMAN Rhomboid domain-containing protein 2 OS=Homo sapiens GN=RHBDD2 PE=2
SV=2
Length = 364
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 10 ELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLI 69
ER +G+VR + T++ A +AI+ L + + +L V D A GF+ V F+++
Sbjct: 89 NFERTVGTVRHCFFTVIFAIFSAIIFLSFEAVSS---LSKLGEVED--ARGFTPVAFAML 143
Query: 70 VIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAY--TYG 127
+ T S + VFG+ +P+ P +LL L+ S L ++CG+ G AY TY
Sbjct: 144 GVTTVRSRMRRALVFGMV-VPSVLVPWLLLGA-SWLIPQTSFLSNVCGLSIGLAYGLTYC 201
Query: 128 F 128
+
Sbjct: 202 Y 202
>sp|Q5AH12|RBD2_CANAL Rhomboid protein 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RBD2 PE=3 SV=1
Length = 284
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 58 AIGFSGVIFSLIVIETSLSGAQSRSVFGLFNI----PAKWY----PLILLVLFQVLMTNV 109
IG SG+ FSL+ + ++ R + F++ K Y P ++ ++F +L +
Sbjct: 124 VIGLSGIAFSLMS-YMAYHESKFRPIMHTFHLSNSLEIKLYTLYVPFVVAIVFMILFPSS 182
Query: 110 SLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESS 145
SL GHL GI +G+ +YG+ + L P + + IE+
Sbjct: 183 SLPGHLFGITTGYLLSYGYIDKLYPPSKVITTIENK 218
>sp|Q7S4V5|RBD2_NEUCR Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2
PE=3 SV=1
Length = 276
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 1 MLALVPLGSELERIMG---SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDEC 57
++A PL E G SV +F+ AT ++++ + + H +
Sbjct: 91 IVAFTPLLERFEHEHGTLTSVALFFGP--FATIPGLIYVFVERFILH---------ANTP 139
Query: 58 AIGFSGVIFSLIVIETSLSGAQSRSVFGL--FNIPAKWYPLILLVLFQVLMTNVSLLGHL 115
+G S +F L+ +E ++ ++ F + +NIP PL+L+V+ L+ + S LGHL
Sbjct: 140 VMGASMWVFLLLGME-AIRTYKTNPYFTISTYNIPTWITPLLLVVVTAALLPSSSFLGHL 198
Query: 116 CGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFI 158
G+L G+ + G+ L P IE L+ R P ++
Sbjct: 199 AGLLVGYGFGLGYLKFLAPPEWALRFIEGK--LNLLGRLPHYV 239
>sp|Q5UQ86|RHBDL_MIMIV Putative rhomboid protein L523 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L523 PE=3 SV=1
Length = 171
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 9 SELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSL 68
S LE +MG + + I + +++L LL H F + +GFSGVIF L
Sbjct: 56 SFLEDVMGHAKFAFCIIFIWILSSML-----LLAEHTAFPSRK----VYTVGFSGVIFGL 106
Query: 69 IVIE-TSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYT 125
IV+ SL + S+ GL +L ++ Q ++ +S GH+CG+++GF Y
Sbjct: 107 IVVYLMSLGKNRGLSIAGL----------VLSIIPQFFVSGISYEGHICGMIAGFVYV 154
>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3
SV=2
Length = 286
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 59 IGFSGVIFSLIVIETSLSGAQSRSVFGL------FNIPAKWYPLILLVLFQVLMTNVSLL 112
IG SGV+FS + + ++ +IP + P I L++ VL+ S
Sbjct: 130 IGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLYSPFIFLIVCMVLIPGSSFW 189
Query: 113 GHLCGILSGFAYTYGFFNLLMP 134
GHL GI SG+ G+ L P
Sbjct: 190 GHLAGISSGYLLALGYIKFLYP 211
>sp|Q4R910|UBAC2_MACFA Ubiquitin-associated domain-containing protein 2 OS=Macaca
fascicularis GN=UBAC2 PE=2 SV=1
Length = 345
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 273 PAGQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
PA VS+E++ +L+ MGF + AL A++ DLNVA L Q
Sbjct: 298 PAAPPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q10255|YD27_SCHPO Uncharacterized protein C56F8.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC56F8.07 PE=4 SV=2
Length = 507
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 283 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
+ +I +LVSMGFD + AL AA+GDL+VA L
Sbjct: 472 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 506
>sp|Q8NBM4|UBAC2_HUMAN Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
VS+E++ +L+ MGF + AL A++ DLNVA L Q
Sbjct: 305 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
>sp|Q5ZJQ8|UBAC2_CHICK Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
VS+E++ +L+ MGF + AL A++ DLNVA L Q
Sbjct: 305 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
>sp|Q8R1K1|UBAC2_MOUSE Ubiquitin-associated domain-containing protein 2 OS=Mus musculus
GN=Ubac2 PE=2 SV=1
Length = 345
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
VS+E++ +L+ MGF + AL A++ DLNVA L Q
Sbjct: 306 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q10256|MUD1_SCHPO UBA domain-containing protein mud1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mud1 PE=1 SV=1
Length = 332
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 283 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
+ +I +LVSMGFD + AL AA+GDL+VA L
Sbjct: 297 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 331
>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RBD2 PE=1 SV=1
Length = 262
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 58 AIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCG 117
A G+ +F+ + S ++R ++IP + PL+LLV V++ S GH G
Sbjct: 123 ASGWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWGHFFG 182
Query: 118 ILSGFA--YTYGFFNLLMPGTSFYSAIESS 145
+ G+A Y +FN + P + IE S
Sbjct: 183 LCVGYAIGYKESWFNKITPPGWIITKIEKS 212
>sp|Q6FSG0|RBD2_CANGA Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RBD2 PE=3 SV=1
Length = 266
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 88 NIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYG--FFNLLMPGTSFYSAIESS 145
+IP ++ P++ L+ ++ S LGH G++ G+ YG +FN+L+P IE
Sbjct: 159 SIPTQFTPVVFLLFTAIVFFQSSFLGHTAGMIVGYIMGYGETWFNILIPPAWIIEKIEEK 218
Query: 146 S 146
+
Sbjct: 219 A 219
>sp|Q6CFI3|DDI1_YARLI DNA damage-inducible protein 1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DDI1 PE=3 SV=1
Length = 397
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 275 GQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
G G DE+I L+S+G+ + +V VAL DGD+ +A +L Q
Sbjct: 352 GSAGDAFKDEDIVNLMSLGYSREKVVVALKQTDGDVELAASLLFSQ 397
>sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27
PE=2 SV=1
Length = 192
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 283 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
+E++++LV MGF QV A+ ++ GD N+A+E L
Sbjct: 155 EEKVKRLVEMGFGDAQVRSAIESSGGDENLALEKL 189
>sp|Q6BK42|DDI1_DEBHA DNA damage-inducible protein 1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DDI1 PE=3 SV=2
Length = 448
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 269 VDRVPAGQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQ 319
V R G + S+ +I++LVS+GF K + AL + G++ VA +L Q
Sbjct: 398 VKRQDTGNSSSKFSESDIKQLVSLGFSKQEAIFALEQSQGNVEVAASLLFQ 448
>sp|Q5H054|SMC_XANOR Chromosome partition protein Smc OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=smc PE=3 SV=2
Length = 1167
Score = 33.5 bits (75), Expect = 2.1, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 232 ARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQGAVVSDEEIQKLVS 291
AR L S PE S ++T G+RL + V V R A +QGA++ + +IQ+L
Sbjct: 615 ARTLQRSLPEGDS--VITRNGERLGE-------GWVRVSRSGAAKQGALLRERQIQEL-- 663
Query: 292 MGFDKTQVE 300
+TQ+E
Sbjct: 664 ----RTQIE 668
>sp|P61087|UBE2K_MOUSE Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=1
SV=3
Length = 200
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 154 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 197
>sp|P61086|UBE2K_HUMAN Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1
SV=3
Length = 200
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 154 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 197
>sp|P61085|UBE2K_BOVIN Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3
Length = 200
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 278 GAVVSDEE----IQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
GA VS E I+ L +MGFD+ V VAL++ D+ A E+L
Sbjct: 154 GAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 197
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 55 DECAIGFSGVIFSLIVIETSLSGAQSRSVF--GLFNIPAKWYPLILLVLFQVLMTNVSLL 112
+ +G S IF L+ E ++ +S F G IP PL L + + N S L
Sbjct: 131 NTAVVGASVWIFLLLGSE-AIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVPNTSFL 189
Query: 113 GHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFI 158
GHL I+ G+ G+ + +P IE L+ R P ++
Sbjct: 190 GHLSAIIIGYLLGLGYLKVFVPPEKILRWIEGK--LNLLGRLPHYV 233
>sp|A1WWA3|GCST_HALHL Aminomethyltransferase OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=gcvT PE=3 SV=1
Length = 360
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 234 LLDNSSPENRSHMIVTETGDRL--SDERQPALGTAVAVDRVPAGQQG 278
L++ +P +++ T+ GD + S P LG +A+ RVPAG +G
Sbjct: 286 LVEGRAPAREGYVVRTDAGDGVITSGAHSPTLGGPIALARVPAGAEG 332
>sp|C4LA24|FTSW_TOLAT Lipid II flippase FtsW OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=ftsW PE=3 SV=1
Length = 384
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 20 MFYITILLATSNAILHLLIALLVA----HIPFYRLQNVMDECAIGFSGVIFSLIVIETSL 75
MFY T ++ L + L + ++P R + +G G++F+++ + ++
Sbjct: 48 MFYFT-----KRHLIFLFVCLGIGVGTLYLPLERWREWSGRLLVGALGLLFAVLAVGRTV 102
Query: 76 SGAQSRSVFGLFNI-PAKWYPLILLVL 101
+GA+ FG FNI PA+ L L+V
Sbjct: 103 NGAKRWIGFGFFNIQPAELAKLALIVF 129
>sp|O94685|UCP8_SCHPO UBA domain-containing protein 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ucp8 PE=1 SV=2
Length = 829
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 283 DEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317
+E +Q+L+SMGF + + +AL A + D+N A IL
Sbjct: 791 NELLQELLSMGFPREKAVIALEATNYDVNEAANIL 825
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 286 IQKLVSMGFDKTQVEVALAAADGDLNVAVEILSQQ 320
+QKL GF ++AL DGDL A+E L +Q
Sbjct: 186 VQKLSRYGFHTEHCQLALRICDGDLGAALEHLLRQ 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,402,127
Number of Sequences: 539616
Number of extensions: 4519905
Number of successful extensions: 12500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 12435
Number of HSP's gapped (non-prelim): 91
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)