Query 020822
Match_columns 321
No_of_seqs 324 out of 1325
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vg5_A RSGI RUH-014, rhomboid 99.6 6.8E-15 2.3E-19 111.8 7.8 61 257-320 7-68 (73)
2 2xov_A Rhomboid protease GLPG; 99.5 2.1E-13 7.3E-18 119.8 11.0 108 1-129 65-179 (181)
3 2nr9_A Protein GLPG homolog; i 99.4 7.2E-14 2.5E-18 124.4 6.6 112 1-130 70-185 (196)
4 2g3q_A Protein YBL047C; endocy 99.3 1.3E-12 4.3E-17 89.3 4.3 36 282-317 4-39 (43)
5 1ify_A HHR23A, UV excision rep 99.3 1.8E-12 6.3E-17 91.1 4.1 36 282-317 8-43 (49)
6 1veg_A NEDD8 ultimate buster-1 99.3 3.8E-12 1.3E-16 98.8 6.1 40 280-319 27-67 (83)
7 2jy5_A Ubiquilin-1; UBA, alter 99.2 1.6E-11 5.3E-16 87.4 6.8 38 280-317 10-48 (52)
8 1wji_A Tudor domain containing 99.2 1E-11 3.5E-16 91.8 5.6 37 281-317 8-44 (63)
9 1wiv_A UBP14, ubiquitin-specif 99.2 1.2E-11 4.1E-16 93.9 6.2 41 279-319 26-67 (73)
10 2knz_A Ubiquilin-4; cytoplasm, 99.2 6.4E-12 2.2E-16 89.7 4.4 37 281-317 10-47 (53)
11 1z96_A DNA-damage, UBA-domain 99.2 1.4E-11 4.9E-16 82.3 5.1 36 282-317 4-39 (40)
12 2dak_A Ubiquitin carboxyl-term 99.1 3.3E-11 1.1E-15 88.9 5.2 38 280-317 7-44 (63)
13 2dai_A Ubadc1, ubiquitin assoc 99.1 9.8E-11 3.3E-15 91.0 8.0 38 280-317 27-64 (83)
14 1wgn_A UBAP1, ubiquitin associ 99.1 3E-11 1E-15 87.8 4.6 38 282-319 19-57 (63)
15 2bwb_A Ubiquitin-like protein 99.1 4.7E-11 1.6E-15 82.8 5.4 37 281-317 6-43 (46)
16 1vej_A Riken cDNA 4931431F19; 99.1 8.3E-11 2.8E-15 89.4 7.1 38 280-317 27-65 (74)
17 2ekk_A UBA domain from E3 ubiq 99.1 5.5E-11 1.9E-15 82.6 4.7 37 280-317 7-43 (47)
18 1dv0_A DNA repair protein HHR2 99.1 3.3E-11 1.1E-15 84.0 2.5 36 282-317 4-39 (47)
19 2dag_A Ubiquitin carboxyl-term 99.1 1.5E-10 5E-15 88.1 6.1 39 279-317 6-45 (74)
20 2cpw_A CBL-interacting protein 99.1 6.8E-11 2.3E-15 87.6 4.0 36 282-317 19-55 (64)
21 1wr1_B Ubiquitin-like protein 99.1 1.3E-10 4.4E-15 84.5 5.2 37 281-317 16-53 (58)
22 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 1.1E-10 3.8E-15 86.4 4.6 38 280-317 7-45 (64)
23 2dah_A Ubiquilin-3; UBA domain 99.0 2.2E-10 7.5E-15 82.1 5.6 37 281-317 8-45 (54)
24 2ooa_A E3 ubiquitin-protein li 99.0 3.9E-10 1.3E-14 79.3 5.5 36 282-317 11-46 (52)
25 2crn_A Ubash3A protein; compac 99.0 2.8E-10 9.6E-15 84.3 4.1 37 281-317 8-45 (64)
26 2dkl_A Trinucleotide repeat co 98.9 6.1E-10 2.1E-14 86.9 5.0 37 281-317 20-56 (85)
27 1vek_A UBP14, ubiquitin-specif 98.9 1.4E-09 4.6E-14 84.7 6.1 39 279-317 26-65 (84)
28 2d9s_A CBL E3 ubiquitin protei 98.9 1.7E-09 5.9E-14 76.3 5.6 36 282-317 9-44 (53)
29 2cwb_A Chimera of immunoglobul 98.8 4.1E-09 1.4E-13 85.6 6.0 37 281-317 65-102 (108)
30 2juj_A E3 ubiquitin-protein li 98.8 2.2E-09 7.6E-14 76.0 3.7 36 282-317 7-42 (56)
31 2dna_A Unnamed protein product 98.8 2.2E-09 7.4E-14 80.0 3.8 37 281-317 18-55 (67)
32 4ae4_A Ubiquitin-associated pr 98.7 7.1E-09 2.4E-13 85.6 5.0 39 282-320 76-115 (118)
33 3k9o_A Ubiquitin-conjugating e 98.7 6.9E-09 2.4E-13 92.7 5.3 36 282-317 163-198 (201)
34 2lbc_A Ubiquitin carboxyl-term 98.7 1.5E-08 5E-13 84.3 5.7 37 281-317 77-113 (126)
35 1wj7_A Hypothetical protein (R 98.7 1.7E-08 5.6E-13 81.2 5.1 36 282-317 39-75 (104)
36 2oo9_A E3 ubiquitin-protein li 98.6 4.3E-08 1.5E-12 66.9 5.1 36 282-317 4-39 (46)
37 2cp8_A NEXT to BRCA1 gene 1 pr 98.5 7.7E-08 2.6E-12 68.6 4.2 38 280-317 7-45 (54)
38 2qsf_X RAD23, UV excision repa 98.5 6.3E-08 2.1E-12 84.6 3.7 37 281-317 129-165 (171)
39 3e46_A Ubiquitin-conjugating e 98.5 1.2E-07 4E-12 87.8 5.4 36 282-317 215-250 (253)
40 1oqy_A HHR23A, UV excision rep 98.4 1.3E-07 4.4E-12 91.9 3.3 37 281-317 167-203 (368)
41 2lbc_A Ubiquitin carboxyl-term 98.4 2.6E-07 8.8E-12 76.7 4.5 38 280-317 1-39 (126)
42 2cos_A Serine/threonine protei 98.3 5.4E-07 1.8E-11 63.7 4.8 38 280-317 7-45 (54)
43 1oqy_A HHR23A, UV excision rep 98.2 3.5E-07 1.2E-11 88.9 2.5 43 277-319 320-363 (368)
44 4ae4_A Ubiquitin-associated pr 98.2 2E-06 6.7E-11 70.9 5.3 36 282-317 8-43 (118)
45 2pwq_A Ubiquitin conjugating e 97.7 5.1E-06 1.7E-10 75.1 0.0 36 282-317 177-212 (216)
46 2cp9_A EF-TS, EF-TSMT, elongat 97.2 0.00031 1E-08 51.7 4.0 38 280-317 7-45 (64)
47 1otr_A Protein CUE2; protein-p 97.0 0.00082 2.8E-08 46.8 4.6 36 282-317 4-41 (49)
48 1wgl_A TOLL-interacting protei 96.9 0.0011 3.8E-08 47.9 4.7 38 280-317 7-46 (59)
49 3ihp_A Ubiquitin carboxyl-term 96.9 0.00077 2.7E-08 71.8 5.5 38 280-317 718-755 (854)
50 1tte_A Ubiquitin-conjugating e 96.9 0.00059 2E-08 61.4 4.0 31 281-311 168-198 (215)
51 2dhy_A CUE domain-containing p 96.5 0.005 1.7E-07 45.6 6.1 37 280-317 16-55 (67)
52 1q02_A Sequestosome 1; helical 96.5 0.0019 6.6E-08 45.2 3.2 36 282-317 10-47 (52)
53 1v92_A NSFL1 cofactor P47; 3-h 96.4 0.0053 1.8E-07 41.4 5.2 36 282-317 5-41 (46)
54 3e21_A HFAF1, FAS-associated f 96.1 0.0058 2E-07 41.8 4.0 35 282-316 5-41 (45)
55 2d9g_A YY1-associated factor 2 96.1 0.0048 1.6E-07 43.6 3.7 32 225-256 9-40 (53)
56 2dal_A Protein KIAA0794; FAS a 96.0 0.011 3.8E-07 42.8 5.4 36 282-317 15-51 (62)
57 1tr8_A Conserved protein (MTH1 95.9 0.011 3.8E-07 47.2 5.5 38 280-317 63-101 (102)
58 2dam_A ETEA protein; KIAA0887, 95.7 0.016 5.6E-07 42.6 5.3 36 282-317 18-55 (67)
59 2crc_A Ubiquitin conjugating e 95.4 0.01 3.5E-07 41.7 3.1 37 218-254 1-37 (52)
60 2dzl_A Protein FAM100B; UBA-li 94.0 0.09 3.1E-06 38.5 5.2 34 284-317 19-53 (66)
61 1nj3_A NPL4; NZF domain, rubre 93.5 0.023 8E-07 35.3 1.2 26 226-251 5-30 (31)
62 4dbg_B Ring finger protein 31; 93.2 0.063 2.2E-06 46.0 3.7 35 283-317 103-138 (162)
63 3a9j_C Mitogen-activated prote 92.7 0.04 1.4E-06 34.9 1.4 28 225-252 6-33 (34)
64 3ihp_A Ubiquitin carboxyl-term 92.7 0.078 2.7E-06 56.4 4.4 38 280-317 650-688 (854)
65 2di0_A Activating signal coint 88.3 0.78 2.7E-05 34.1 5.1 36 282-317 13-50 (71)
66 3b08_B Ranbp-type and C3HC4-ty 87.8 0.21 7.1E-06 36.5 1.6 29 225-253 6-34 (64)
67 2qho_B E3 ubiquitin-protein li 87.4 1.3 4.3E-05 30.6 5.3 38 280-317 7-46 (53)
68 2jp7_A MRNA export factor MEX6 85.3 1.2 3.9E-05 31.7 4.4 35 283-317 7-42 (57)
69 1oai_A Nuclear RNA export fact 84.9 1.5 5.2E-05 31.2 4.9 35 283-317 8-43 (59)
70 2ebq_A Nuclear pore complex pr 81.4 0.87 3E-05 31.2 2.4 38 218-255 1-39 (47)
71 1ixs_A Holliday junction DNA h 78.8 3.4 0.00012 29.6 5.0 25 282-306 17-41 (62)
72 3gj3_B Nuclear pore complex pr 73.7 1.3 4.4E-05 28.0 1.3 28 225-252 5-32 (33)
73 1p3q_Q VPS9P, vacuolar protein 73.5 1.5 5.1E-05 30.9 1.7 36 282-317 12-49 (54)
74 1vdl_A Ubiquitin carboxyl-term 71.6 6.1 0.00021 29.6 4.7 38 282-319 24-64 (80)
75 1ufz_A Hypothetical protein BA 70.2 4.4 0.00015 30.9 3.9 38 282-319 37-75 (83)
76 2ebr_A Nuclear pore complex pr 66.0 6 0.00021 26.9 3.5 31 225-255 9-39 (47)
77 3e7l_A Transcriptional regulat 59.3 5.1 0.00017 28.1 2.2 24 294-317 19-42 (63)
78 4dbg_B Ring finger protein 31; 59.0 7.8 0.00027 33.0 3.7 24 294-317 75-98 (162)
79 1umq_A Photosynthetic apparatu 54.2 6.6 0.00022 29.5 2.2 23 295-317 42-64 (81)
80 1cuk_A RUVA protein; DNA repai 49.0 19 0.00064 31.6 4.7 25 282-306 160-184 (203)
81 2lva_A Ubiquitin carboxyl-term 53.3 3.9 0.00013 33.5 0.0 36 282-317 18-55 (129)
82 3ff5_A PEX14P, peroxisomal bio 44.6 27 0.00091 24.4 3.9 25 282-306 30-54 (54)
83 2ztd_A Holliday junction ATP-d 44.6 30 0.001 30.6 5.3 25 282-306 164-188 (212)
84 1jkg_B TAP; NTF2-like domain, 44.0 4.8 0.00016 36.4 0.0 36 282-317 198-234 (250)
85 2w84_A Peroxisomal membrane pr 43.2 33 0.0011 25.2 4.4 28 282-309 35-62 (70)
86 3gj7_B Nuclear pore complex pr 43.0 8.6 0.00029 30.0 1.3 28 225-252 70-97 (98)
87 2l2d_A OTU domain-containing p 41.9 83 0.0028 22.8 6.2 44 274-317 9-53 (73)
88 3gj5_B Nuclear pore complex pr 41.4 10 0.00034 24.0 1.2 28 225-252 5-32 (34)
89 3fe3_A MAP/microtubule affinit 40.6 38 0.0013 30.7 5.6 38 280-317 287-324 (328)
90 3gj7_B Nuclear pore complex pr 39.7 6.1 0.00021 30.9 0.0 30 225-254 7-36 (98)
91 4fp9_B Mterf domain-containing 37.3 23 0.0008 33.3 3.6 30 282-311 46-75 (335)
92 1ntc_A Protein (nitrogen regul 36.8 12 0.00042 28.0 1.3 24 294-317 51-74 (91)
93 3k6g_A Telomeric repeat-bindin 34.5 78 0.0027 25.0 5.5 32 286-317 17-49 (111)
94 2kna_A Baculoviral IAP repeat- 33.9 30 0.001 27.1 3.1 21 285-305 30-50 (104)
95 1eto_A FIS, factor for inversi 33.4 22 0.00074 27.5 2.2 24 294-317 58-81 (98)
96 1g2h_A Transcriptional regulat 32.4 22 0.00075 24.6 2.0 23 294-317 21-43 (61)
97 1ss6_A P47, NSFL1 cofactor P47 30.7 18 0.00061 28.4 1.3 16 207-222 82-97 (102)
98 2ebv_A Nuclear pore complex pr 28.1 85 0.0029 22.0 4.4 28 225-252 29-56 (57)
99 1s3s_G P47 protein; AAA ATPase 27.1 19 0.00064 29.1 0.9 15 208-222 8-22 (127)
100 1ixr_A Holliday junction DNA h 24.5 16 0.00054 31.7 0.0 25 282-306 146-170 (191)
101 3gj8_B Nuclear pore complex pr 20.7 35 0.0012 25.9 1.3 30 224-253 62-91 (92)
No 1
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.56 E-value=6.8e-15 Score=111.80 Aligned_cols=61 Identities=61% Similarity=0.799 Sum_probs=51.9
Q ss_pred cCCCccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hcc
Q 020822 257 DERQPALGTAVAVDRVPAGQQGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 320 (321)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~~ 320 (321)
-+|+++++|+. ..+|..|....++++|++|++|||+|++|++||++++||+++|+||| +.+
T Consensus 7 ~~r~~~~~~a~---~~~~~~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 7 GSRQAPIANAA---VLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CCCCCCCSCCC---CCSSSCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccccccccCC---CCCCCccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 46888877776 33344677788999999999999999999999999999999999999 554
No 2
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.47 E-value=2.1e-13 Score=119.80 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred CeeehhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCChHHHHHHHHHHHHH---hcC
Q 020822 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETS---LSG 77 (321)
Q Consensus 1 MlaL~~~G~~lEr~~GT~~fl~lyll~~i~~glly~ll~~l~~~~~~~~~~~~~~~~~vGaSGaIFaLl~~~~~---~~p 77 (321)
|++|+.+|+.+|+.+|++||+.+|+++++.+++.++++. + ...+|+||+|||++++... ..|
T Consensus 65 m~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~---------~------~~~vGaSGai~gl~g~~~~~~~~~p 129 (181)
T 2xov_A 65 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS---------G------PWFGGLSGVVYALMGYVWLRGERDP 129 (181)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---------C------SCCCCSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---------C------CCceeHHHHHHHHHHHHHHHHhhCc
Confidence 678999999999999999999999999999998754431 1 1389999999999997754 233
Q ss_pred CccccccccccchhHHHHHHHH-HHHHHh---cchhHHHHHHHHHHHHHHHHHHhh
Q 020822 78 AQSRSVFGLFNIPAKWYPLILL-VLFQVL---MTNVSLLGHLCGILSGFAYTYGFF 129 (321)
Q Consensus 78 ~~~~~l~G~~~IP~~~~p~ilL-il~~ll---~p~~S~lgHL~Gil~G~ly~~g~l 129 (321)
+. . +.+|.+...++.+ ++..+. .|++++.+|++|+++|+++++-+.
T Consensus 130 ~~--~----~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~ 179 (181)
T 2xov_A 130 QS--G----IYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDS 179 (181)
T ss_dssp GG--S----CCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred Cc--e----eeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence 22 1 1234433322221 233333 368999999999999999987543
No 3
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.45 E-value=7.2e-14 Score=124.39 Aligned_cols=112 Identities=13% Similarity=0.268 Sum_probs=77.4
Q ss_pred CeeehhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCChHHHHHHHHHHHHHhcCCcc
Q 020822 1 MLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQS 80 (321)
Q Consensus 1 MlaL~~~G~~lEr~~GT~~fl~lyll~~i~~glly~ll~~l~~~~~~~~~~~~~~~~~vGaSGaIFaLl~~~~~~~p~~~ 80 (321)
|++|+.+|+.+|+.+|+++|+.+|+++++.+++.++++. + ...+|+||+|||++++.... +...
T Consensus 70 m~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~---------~------~~~vGaSGai~gl~g~~~~~-~~~~ 133 (196)
T 2nr9_A 70 LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS---------G------PAFFGLSGVVYAVLGYVFIR-DKLN 133 (196)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---------C------SCCCCSHHHHHHHHHHHHHH-HHSS
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhc---------C------CCeeeHHHHHHHHHHHHHHH-HHhc
Confidence 678999999999999999999999999999998754431 1 13899999999999976543 2111
Q ss_pred ccccccccchhHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHhhh
Q 020822 81 RSVFGLFNIPAKWYPLILLVLFQVLMT----NVSLLGHLCGILSGFAYTYGFFN 130 (321)
Q Consensus 81 ~~l~G~~~IP~~~~p~ilLil~~ll~p----~~S~lgHL~Gil~G~ly~~g~l~ 130 (321)
...+. ++.|.+....+. ++..++.+ ++++.+|++|+++|+++++-+.+
T Consensus 134 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 134 HHLFD-LPEGFFTMLLVG-IALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TTSCC-CCCSSTTTTTTT-TTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhc-chHHHHHHHHHH-HHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 11111 122322211111 22233333 89999999999999999886543
No 4
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.31 E-value=1.3e-12 Score=89.25 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=35.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++++|++|++|||++++|++||++++||+++|+|||
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHH
Confidence 689999999999999999999999999999999999
No 5
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.29 E-value=1.8e-12 Score=91.08 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=35.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++++|++|++|||+|++|++||++++||+++|+|||
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 689999999999999999999999999999999999
No 6
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.28 E-value=3.8e-12 Score=98.80 Aligned_cols=40 Identities=38% Similarity=0.552 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hc
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
++++++|++|++|||+|++|++||++++||+++|+||| +.
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34899999999999999999999999999999999999 53
No 7
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.24 E-value=1.6e-11 Score=87.38 Aligned_cols=38 Identities=37% Similarity=0.583 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+..+++|++|++||| +|+++++||++++||+++|+|||
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 447999999999999 99999999999999999999999
No 8
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.23 E-value=1e-11 Score=91.76 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+++++|++|++|||++++|++||++++||+++|+|||
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L 44 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVL 44 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5899999999999999999999999999999999999
No 9
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.23 E-value=1.2e-11 Score=93.94 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hc
Q 020822 279 AVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 279 ~~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
+.+++++|++|++|||++++|++||++++||+++|+||| +.
T Consensus 26 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 356899999999999999999999999999999999999 54
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.22 E-value=6.4e-12 Score=89.73 Aligned_cols=37 Identities=38% Similarity=0.567 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++||| +++++++||++++||+++|+|||
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 36789999999999 99999999999999999999999
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.20 E-value=1.4e-11 Score=82.28 Aligned_cols=36 Identities=50% Similarity=0.733 Sum_probs=34.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|++|++|||++++|++||++++||+++|++||
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999999999999999999999997
No 12
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=88.88 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++++|++|++|||++++|++||++++||+++|+|||
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L 44 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 44 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35899999999999999999999999999999999999
No 13
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.8e-11 Score=91.02 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++++|++|++|||++++|++||++++||+++|+|||
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL 64 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWL 64 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 35899999999999999999999999999999999999
No 14
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=3e-11 Score=87.77 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=35.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hc
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
.++.|+.|++|||++++|++||+++|+|+|+|+||| +.
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 478899999999999999999999999999999999 53
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.14 E-value=4.7e-11 Score=82.82 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++||| +++.+++||++++||+++|+|||
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 36899999999999 57788999999999999999999
No 16
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.14 E-value=8.3e-11 Score=89.42 Aligned_cols=38 Identities=34% Similarity=0.596 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+..+++|++|+|||| +|+++++||++++||+++|+|||
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 457999999999999 68999999999999999999999
No 17
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.5e-11 Score=82.63 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++++|++|++|||++++|++||++++ |+|+|+|||
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L 43 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYL 43 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHH
Confidence 4589999999999999999999999996 999999999
No 18
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.08 E-value=3.3e-11 Score=83.96 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=35.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++++|++|++|||+|++|++||.+|+||+++|++||
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 689999999999999999999999999999999999
No 19
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=88.14 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 279 AVVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 279 ~~~~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
+.+++++|++|++|||++++|++||++++| |+|+|+|||
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL 45 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWV 45 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 346899999999999999999999999996 899999999
No 20
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.07 E-value=6.8e-11 Score=87.57 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
++++|++|++|||++++|++||++++| |+|+|+|||
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL 55 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWL 55 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 678999999999999999999999999 999999999
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.07 E-value=1.3e-10 Score=84.47 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++||| +++++++||++++||+++|+|||
T Consensus 16 ~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 16 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 36889999999999 58888999999999999999999
No 22
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.06 E-value=1.1e-10 Score=86.39 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAA-DGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~-~~d~~~A~e~L 317 (321)
.+++++|++|++|||++++|++||+++ |||+++|+|||
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL 45 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWL 45 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 447889999999999999999999999 79999999999
No 23
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=2.2e-10 Score=82.07 Aligned_cols=37 Identities=38% Similarity=0.446 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhcCCCH-HHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDK-TQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~-~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++|||++ +.+++||++++||+++|+|||
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3699999999999955 557999999999999999999
No 24
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.01 E-value=3.9e-10 Score=79.27 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|++|++|||+|++|++||+.++||+|.|.++|
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniL 46 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSIL 46 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 579999999999999999999999999999999998
No 25
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=2.8e-10 Score=84.25 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
++++.|++|++|||++++|++||.+++| |+|+|+|||
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL 45 (64)
T 2crn_A 8 SSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 45 (64)
T ss_dssp CSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3788899999999999999999999987 999999999
No 26
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=6.1e-10 Score=86.87 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+++++|++|++|||+|++|++||+.++||+++|+|||
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL 56 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSAL 56 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3689999999999999999999999999999999999
No 27
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.92 E-value=1.4e-09 Score=84.74 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHhC-CCHHHHHHHh
Q 020822 279 AVVSDEEIQKLVSMGFDKTQVEVALAAAD-GDLNVAVEIL 317 (321)
Q Consensus 279 ~~~~~~~v~~L~~MGf~~~~a~~AL~~~~-~d~~~A~e~L 317 (321)
..+++++|++|++|||++++|++||++++ ||+++|+|||
T Consensus 26 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL 65 (84)
T 1vek_A 26 PVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWL 65 (84)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 35589999999999999999999999995 8999999999
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=1.7e-09 Score=76.34 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=35.0
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|++|++|||+|++|++||..++||+|.|.++|
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence 589999999999999999999999999999999998
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.82 E-value=4.1e-09 Score=85.58 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=35.0
Q ss_pred CCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|+|||| +|+++++||++++||+++|||+|
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46999999999999 67899999999999999999999
No 30
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=75.96 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.|++|++|++|||+++.|++||..++||+|.|.|+|
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiL 42 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 42 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHH
Confidence 699999999999999999999999999999999998
No 31
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.82 E-value=2.2e-09 Score=79.98 Aligned_cols=37 Identities=38% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCHHHHHHHHhcCCC-HHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFD-KTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~-~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++|||. ++.+++||++++||+++|||||
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 357799999999995 4555999999999999999999
No 32
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.74 E-value=7.1e-09 Score=85.56 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=36.4
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hcc
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQQ 320 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~~ 320 (321)
+.++|.+|+||||++++|++||+.+|||+++|+||| .+-
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999 654
No 33
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.74 E-value=6.9e-09 Score=92.72 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=35.2
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++||++|++|||+|++|++||++++||+++|+|+|
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 589999999999999999999999999999999999
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=84.26 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+.+++|++|++|||++++|++||++++||+++|+|||
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799999999999999999999999999999999999
No 35
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.68 E-value=1.7e-08 Score=81.18 Aligned_cols=36 Identities=28% Similarity=0.623 Sum_probs=35.1
Q ss_pred CHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSM-GFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~M-Gf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|++|+|| ||++++|+.||..||||+++|+++|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L 75 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 58999999999 9999999999999999999999999
No 36
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.62 E-value=4.3e-08 Score=66.92 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=34.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
-|++|.+|++|||+++.|++||..+++|+|.|.|.|
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL 39 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 39 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 488999999999999999999999999999999998
No 37
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.51 E-value=7.7e-08 Score=68.55 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGF-DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf-~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+.+..++++|.|||| +++.-++||+++|||+++||+.|
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 456779999999999 89999999999999999999998
No 38
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.48 E-value=6.3e-08 Score=84.55 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++++|++|++|||+|++|++||.+|+||++.|+++|
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L 165 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDKNEEAAANIL 165 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3678999999999999999999999999999999999
No 39
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.47 E-value=1.2e-07 Score=87.85 Aligned_cols=36 Identities=36% Similarity=0.572 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++||++|+||||+|++|+.||+++|||+++|+|+|
T Consensus 215 ~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 215 YTKKIENLCAAGFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 589999999999999999999999999999999999
No 40
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.37 E-value=1.3e-07 Score=91.91 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++|++|++|||+|++|++||++++||+++|+|||
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4799999999999999999999999999999999999
No 41
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.37 E-value=2.6e-07 Score=76.66 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
++++++|++|++|||++..|++||+.+++ |++.|+|||
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL 39 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWI 39 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35789999999999999999999999976 999999999
No 42
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.33 E-value=5.4e-07 Score=63.71 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
++..+.+++|+||||+++.|.+||+++++ .++.|+|||
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL 45 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 45 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHH
Confidence 34778899999999999999999999987 799999999
No 43
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.22 E-value=3.5e-07 Score=88.87 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hc
Q 020822 277 QGAVVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 277 ~~~~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
+.++.++++|++|++|||++++|++||.+|+||+++|+||| ++
T Consensus 320 ~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 320 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp CCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 44566899999999999999999999999999999999999 53
No 44
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.16 E-value=2e-06 Score=70.87 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=34.4
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+.|++|++|||+++.|++||+++++|+++|+|||
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL 43 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYL 43 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 467799999999999999999999999999999999
No 45
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=97.70 E-value=5.1e-06 Score=75.10 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|+++++|||+++++++||++++||+++|+|.|
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l 212 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTL 212 (216)
T ss_dssp ------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 389999999999999999999999999999999998
No 46
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.18 E-value=0.00031 Score=51.69 Aligned_cols=38 Identities=32% Similarity=0.323 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~-MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+..+.|+.|.+ -|....+|++||..+|||++.|++||
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 346788999965 69999999999999999999999999
No 47
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.01 E-value=0.00082 Score=46.84 Aligned_cols=36 Identities=22% Similarity=0.529 Sum_probs=34.0
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~M--Gf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|+.|.|| ..++.+++.+|++++||+++|++.|
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 48899999999 7889999999999999999999998
No 48
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.91 E-value=0.0011 Score=47.90 Aligned_cols=38 Identities=24% Similarity=0.445 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~M--Gf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+.|++|+.|.+| .++++.++.+|.+++||+++|++.|
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3489999999999 3478999999999999999999998
No 49
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.00077 Score=71.82 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++++|+.|.+|||++++|++||+++++|+++|+||+
T Consensus 718 ~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwl 755 (854)
T 3ihp_A 718 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 755 (854)
T ss_dssp -CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhh
Confidence 45899999999999999999999999999999999999
No 50
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=96.89 E-value=0.00059 Score=61.44 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHhCCCHH
Q 020822 281 VSDEEIQKLVSMGFDKTQVEVALAAADGDLN 311 (321)
Q Consensus 281 ~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~ 311 (321)
.++++|++|++|||++++|+.||++++||.+
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 3588999999999999999999999999973
No 51
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.54 E-value=0.005 Score=45.57 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHhcCC---CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGF---DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf---~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
...++++++|.+| | +++.++.+|.+++||+++|+|-|
T Consensus 16 ~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 16 LEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp CCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3369999999999 6 68889999999999999999988
No 52
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=96.46 E-value=0.0019 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.8
Q ss_pred CHHHHHHHHhcCCCHHHH--HHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQV--EVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a--~~AL~~~~~d~~~A~e~L 317 (321)
-++.|.+|.+|||+.+-. .+.|.+.++|+.+|+|.|
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 477899999999998876 599999999999999998
No 53
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.43 E-value=0.0053 Score=41.42 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=31.6
Q ss_pred CHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~-MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|++.++ .|-+++.|+.-|+.++||+++|++..
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3678888866 58899999999999999999999976
No 54
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.12 E-value=0.0058 Score=41.76 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=30.9
Q ss_pred CHHHHHHHHhc-CCCH-HHHHHHHHHhCCCHHHHHHH
Q 020822 282 SDEEIQKLVSM-GFDK-TQVEVALAAADGDLNVAVEI 316 (321)
Q Consensus 282 ~~~~v~~L~~M-Gf~~-~~a~~AL~~~~~d~~~A~e~ 316 (321)
-+++|++++++ |.+. ++|+.-|.++|||++.|+.-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 48899999776 7786 99999999999999999864
No 55
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.10 E-value=0.0048 Score=43.59 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=28.4
Q ss_pred cccccchhhcccCCCCCccccccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETGDRLS 256 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (321)
...|.|..|+|+|.....-|+||++.|.....
T Consensus 9 ~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~~ 40 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTR 40 (53)
T ss_dssp CCCEECSSSCCEECSSCSSCSSSCCCCCCCCC
T ss_pred CCCcCCCCCccCCCCCCCccCCCCCcCCcccc
Confidence 45799999999999999999999999987543
No 56
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.00 E-value=0.011 Score=42.83 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.2
Q ss_pred CHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~-MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|+++++ .|-+++.|+.-|+.++||+++|++..
T Consensus 15 ~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 15 LKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4788999876 68999999999999999999999966
No 57
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=95.92 E-value=0.011 Score=47.20 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCCHHHHHHH-HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKL-VSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L-~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++++.|+.+ ...|.++++|++||+.||||+-.|+-+|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4579999998 4589999999999999999999998776
No 58
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.69 E-value=0.016 Score=42.63 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred CHHHHHHHHh-cC-CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVS-MG-FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~-MG-f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|+++++ .| =++++|+..|..+|||++.|++..
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5778999877 46 689999999999999999999966
No 59
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=95.41 E-value=0.01 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=31.2
Q ss_pred cCCCCCCcccccchhhcccCCCCCccccccccccccc
Q 020822 218 SSSQSPVHVDSNLQARLLDNSSPENRSHMIVTETGDR 254 (321)
Q Consensus 218 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (321)
|++++.....|.|.+|++.|......|+||++.|...
T Consensus 1 ~ss~s~~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 1 GSSGSSGPVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp CCSSCCCSSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCCCCCCCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 4555655678999999999999999999999987754
No 60
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.95 E-value=0.09 Score=38.55 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 284 EEIQKLVS-MGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 284 ~~v~~L~~-MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++|++.++ .|-+++.|+..|+.++||+|+|++..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888765 58899999999999999999999976
No 61
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=93.53 E-value=0.023 Score=35.31 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=24.2
Q ss_pred ccccchhhcccCCCCCcccccccccc
Q 020822 226 VDSNLQARLLDNSSPENRSHMIVTET 251 (321)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (321)
..|.|+.|+|.|......|+||++.|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999876
No 62
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=93.23 E-value=0.063 Score=45.95 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 283 DEEIQKLVSMG-FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 283 ~~~v~~L~~MG-f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..|++.|.+.| |+++++.+||..++||++.|+-.|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 66999999999 568889999999999999999988
No 63
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=92.74 E-value=0.04 Score=34.95 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=25.1
Q ss_pred cccccchhhcccCCCCCccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETG 252 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (321)
...|.|.+|+|.|+.....|+||++.|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3579999999999999999999998774
No 64
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.66 E-value=0.078 Score=56.44 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADG-DLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~-d~~~A~e~L 317 (321)
..+++.+++|++|||++..+++||.++++ |.|.|++||
T Consensus 650 ~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl 688 (854)
T 3ihp_A 650 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWV 688 (854)
T ss_dssp ---CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred CcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHH
Confidence 45788999999999999999999999866 599999999
No 65
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.27 E-value=0.78 Score=34.10 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=33.0
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~M--Gf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.+++|+++.|+ -+.+..++++|+.+|+|+|++++.|
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 47889999988 5789999999999999999999998
No 66
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=87.78 E-value=0.21 Score=36.52 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=25.8
Q ss_pred cccccchhhcccCCCCCcccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETGD 253 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (321)
...|.|-+||+.|+.....|+||++.|..
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~ 34 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRARPE 34 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBCCS
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCCCc
Confidence 45799999999999999999999988654
No 67
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=87.36 E-value=1.3 Score=30.58 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=33.8
Q ss_pred CCCHHHHHHH--HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKL--VSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L--~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++|+.|.+. +=-|=+|+-.++-|+.+|-|++.|++.|
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNl 46 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNL 46 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHH
Confidence 4568888875 6679999999999999999999999998
No 68
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=85.26 E-value=1.2 Score=31.70 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=30.1
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 283 DEEIQKL-VSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 283 ~~~v~~L-~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++.|.++ .+-|.+.+-+.++|+.++||.++|+.-.
T Consensus 7 ~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 7 LELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566666 6779999999999999999999999765
No 69
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=84.91 E-value=1.5 Score=31.22 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 283 DEEIQKL-VSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 283 ~~~v~~L-~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++.|.++ ..-|.+.+-+.++|+.++||.++|+.-.
T Consensus 8 ~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 8 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556666 5679999999999999999999999864
No 70
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.44 E-value=0.87 Score=31.19 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=30.9
Q ss_pred cCCCCCC-cccccchhhcccCCCCCcccccccccccccc
Q 020822 218 SSSQSPV-HVDSNLQARLLDNSSPENRSHMIVTETGDRL 255 (321)
Q Consensus 218 G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (321)
|++++.+ +..|.|.+|++.|.....-|-.|.+.+....
T Consensus 1 ~~~~~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 1 GSSGSSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSCCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCcCCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 4555544 6689999999999999999999988776554
No 71
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=78.82 E-value=3.4 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.8
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAA 306 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~ 306 (321)
.+|.+.-|+.+||++.+|.+|+++.
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4788999999999999999999876
No 72
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=73.65 E-value=1.3 Score=28.02 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=24.6
Q ss_pred cccccchhhcccCCCCCccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETG 252 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (321)
+..|.|.+|++.|.....-|.+|.|.|+
T Consensus 5 ~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 5 SGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCceeCCcccCCCccccCEEcccCCCCC
Confidence 4579999999999999999999988775
No 73
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=73.50 E-value=1.5 Score=30.87 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=29.1
Q ss_pred CHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSM--GFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~M--Gf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++.++.|.+| .+|++-.+.+|.+++||.+.|||-|
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaL 49 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDAL 49 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC--
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 36789999999 5889999999999999999999987
No 74
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.56 E-value=6.1 Score=29.56 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=30.9
Q ss_pred CHHHHHHHHhc-CCCHHH-HHHHHHHhCCCHHHHHHHh-hc
Q 020822 282 SDEEIQKLVSM-GFDKTQ-VEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 282 ~~~~v~~L~~M-Gf~~~~-a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
++--+++|.|. |....+ --.||++.+||+..||-+| .+
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 56678999885 777666 4569999999999999999 54
No 75
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=70.25 E-value=4.4 Score=30.88 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=30.3
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh-hc
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL-SQ 319 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L-~~ 319 (321)
|-+.|+..+-=-.++.+.++|--+++-|+++|++++ +|
T Consensus 37 CLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 37 CLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 344555555555889999999999999999999998 65
No 76
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.01 E-value=6 Score=26.91 Aligned_cols=31 Identities=6% Similarity=0.003 Sum_probs=27.1
Q ss_pred cccccchhhcccCCCCCcccccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETGDRL 255 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (321)
+..|.|.+|++.|.....-|-+|.+.++...
T Consensus 9 ~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 9 EGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp CSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 5679999999999999999999988877654
No 77
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.25 E-value=5.1 Score=28.09 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 294 FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 294 f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
|+++..+.||..++||..+|.+.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567788999999999999999988
No 78
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=58.96 E-value=7.8 Score=33.03 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 294 FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 294 f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++..+|++||.++.||+++|+..+
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~c 98 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEEC 98 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHH
Confidence 678999999999999999999876
No 79
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=54.22 E-value=6.6 Score=29.53 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHh
Q 020822 295 DKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 295 ~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+++..++||+.++||..+|.+.|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 45667899999999999999988
No 80
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=49.04 E-value=19 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=23.1
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAA 306 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~ 306 (321)
.+|.++.|+.+||++.+|.+|+++.
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3788999999999999999999987
No 81
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.29 E-value=3.9 Score=33.46 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=28.9
Q ss_pred CHHHHHHHHhc-CCC-HHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKLVSM-GFD-KTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L~~M-Gf~-~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++--+++|.|. |.. ...-.+||+++|||++.||.+|
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~L 55 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLL 55 (129)
Confidence 45567888775 666 4456789999999999999999
No 82
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=44.63 E-value=27 Score=24.41 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=23.0
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAA 306 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~ 306 (321)
.++||+-|..-|.++++...||+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5899999999999999999999864
No 83
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=44.57 E-value=30 Score=30.58 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.9
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAA 306 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~ 306 (321)
.+|.++.|+.+||++.+|.+|+++.
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4789999999999999999999875
No 84
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=44.03 E-value=4.8 Score=36.40 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred CHHHHHHH-HhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 282 SDEEIQKL-VSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 282 ~~~~v~~L-~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
.++.|+++ ..-|.+.+-+.++|+.++||.++|+.-.
T Consensus 198 q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F 234 (250)
T 1jkg_B 198 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 234 (250)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34567766 5568999999999999999999999754
No 85
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=43.19 E-value=33 Score=25.22 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=25.7
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGD 309 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d 309 (321)
.++||+-|..-|.++++...||+.++.+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~ 62 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTA 62 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence 5899999999999999999999998754
No 86
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=42.96 E-value=8.6 Score=30.01 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=24.9
Q ss_pred cccccchhhcccCCCCCccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETG 252 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (321)
...|.|++|++.|.....-|.+|.+.++
T Consensus 70 ~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 70 IGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCcccCCcCcCCChhhcceecccCCCCC
Confidence 5679999999999999999999988775
No 87
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=41.91 E-value=83 Score=22.77 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=33.6
Q ss_pred CCCCCCCCCHHHHHH-HHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 274 AGQQGAVVSDEEIQK-LVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 274 ~~~~~~~~~~~~v~~-L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
+++.++...+..+.. +...|-+...||.-|.-.|||+..|++-.
T Consensus 9 ~~d~mt~dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 9 LHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp CSCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 344444445555554 57889999999999999999999998754
No 88
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=41.44 E-value=10 Score=24.04 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=23.5
Q ss_pred cccccchhhcccCCCCCccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETG 252 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (321)
...|.|.+|++.|.....-|-+|.|.++
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCceECCeeEeECccccCEEcccCCcCC
Confidence 4569999999999999999999977665
No 89
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=40.63 E-value=38 Score=30.69 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 280 VVSDEEIQKLVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 280 ~~~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
..+++.++.+..|||++++.++.|+...+|+-.|.=+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~l 324 (328)
T 3fe3_A 287 ISDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLL 324 (328)
T ss_dssp CCCHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred cccHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHH
Confidence 34677899999999999999999999999999888776
No 90
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=39.68 E-value=6.1 Score=30.85 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred cccccchhhcccCCCCCccccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETGDR 254 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (321)
.+.|.|+.|++.|.....-|.+|.+.|...
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp ------------------------------
T ss_pred CCcccCCccccCChhhcccccccCCCCCCC
Confidence 467999999999999999999999888654
No 91
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.31 E-value=23 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.2
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHhCCCHH
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAADGDLN 311 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~~~d~~ 311 (321)
.++.|+.|++|||+.+++.++|...-+-..
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~ 75 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL 75 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch
Confidence 477899999999999999999998765433
No 92
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=36.77 E-value=12 Score=28.03 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 294 FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 294 f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
|+++..++||..++||..+|.+.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467778899999999999999988
No 93
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=34.48 E-value=78 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.2
Q ss_pred HHH-HHhcCCCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 286 IQK-LVSMGFDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 286 v~~-L~~MGf~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
|+. +.+..-+--.+.+||-+++||++.|-.+|
T Consensus 17 i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 17 IRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 444 46677888889999999999999999998
No 94
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=33.88 E-value=30 Score=27.08 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 020822 285 EIQKLVSMGFDKTQVEVALAA 305 (321)
Q Consensus 285 ~v~~L~~MGf~~~~a~~AL~~ 305 (321)
.|+...+|||++..++++..+
T Consensus 30 vV~~alemGf~~~~V~~~v~~ 50 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEE 50 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHH
Confidence 688899999999999998876
No 95
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=33.40 E-value=22 Score=27.46 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 294 FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 294 f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
++++..+.||..++||..+|.+.|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 356778899999999999999988
No 96
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=32.41 E-value=22 Score=24.64 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHh
Q 020822 294 FDKTQVEVALAAADGDLNVAVEIL 317 (321)
Q Consensus 294 f~~~~a~~AL~~~~~d~~~A~e~L 317 (321)
|+++..++||..+ ||..+|.+.|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3566778899999 9999999988
No 97
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=30.67 E-value=18 Score=28.41 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.0
Q ss_pred CCCcccccccccCCCC
Q 020822 207 DSRFPGRGRTLSSSQS 222 (321)
Q Consensus 207 ~~~f~G~Gr~LG~~~~ 222 (321)
-..|.|+||+||+...
T Consensus 82 ~~~F~G~G~~LGs~~p 97 (102)
T 1ss6_A 82 FKAFTGEGQKLGSTAP 97 (102)
T ss_dssp STTSCSSSSSGGGCCS
T ss_pred ccCCcccCeECCCCCC
Confidence 3579999999998644
No 98
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.11 E-value=85 Score=22.02 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.6
Q ss_pred cccccchhhcccCCCCCccccccccccc
Q 020822 225 HVDSNLQARLLDNSSPENRSHMIVTETG 252 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (321)
...|+|.+|+.-|......|-.|.+.++
T Consensus 29 ~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 29 IGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp SSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 5689999999999999999999987654
No 99
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=27.08 E-value=19 Score=29.08 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=11.5
Q ss_pred CCcccccccccCCCC
Q 020822 208 SRFPGRGRTLSSSQS 222 (321)
Q Consensus 208 ~~f~G~Gr~LG~~~~ 222 (321)
..|.|+||+||+...
T Consensus 8 ~~F~G~G~~Lgs~~p 22 (127)
T 1s3s_G 8 KAFTGEGQKLGSTAP 22 (127)
T ss_dssp --CCSCCCCCCSSCC
T ss_pred CCceecCeECCCCCC
Confidence 469999999999754
No 100
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=24.46 E-value=16 Score=31.75 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHHHh
Q 020822 282 SDEEIQKLVSMGFDKTQVEVALAAA 306 (321)
Q Consensus 282 ~~~~v~~L~~MGf~~~~a~~AL~~~ 306 (321)
.+|.+..|+.+||++.+|.+|+++.
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678999999999999999999886
No 101
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=20.66 E-value=35 Score=25.88 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=24.9
Q ss_pred CcccccchhhcccCCCCCcccccccccccc
Q 020822 224 VHVDSNLQARLLDNSSPENRSHMIVTETGD 253 (321)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (321)
...+|.|+.|++.|......|..|.+.++.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCCC
Confidence 467899999999999999999999887653
Done!