BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020823
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HFB|A Chain A, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
pdb|2HFB|B Chain B, Crystal Structure Of Selenomethionine-Labelled Rafe From
Streptococcus Pneumoniae
Length = 409
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 28/139 (20%)
Query: 182 NADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGMFLDAVDVSGGHTLRNMFA 241
NA + L + AG + +++ ++P++ +++ + AG+F D + ++N +A
Sbjct: 62 NAGEVLKTRVLAGDVPDVVN------IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYA 115
Query: 242 GVVSLQEVQKNLPITCTS---------------QLDPTSCFFPQ---NLVANIKTPMFLL 283
++ E N+P T + ++ T F Q ++VA +TP +
Sbjct: 116 EKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIA 175
Query: 284 NAAYDAWQVNSY--LIFLT 300
A DAW +N Y L F T
Sbjct: 176 GA--DAWTLNGYNQLAFAT 192
>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
Streptococcus Pneumoniae
Length = 401
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 182 NADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGMFLDAVDVSGGHTLRNMFA 241
NA + L + AG + +++ ++P++ +++ + AG+F D + ++N +A
Sbjct: 57 NAGEVLKTRVLAGDVPDVVN------IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYA 110
Query: 242 GVVSLQEVQKNLPITCTS---------------QLDPTSCFFPQ---NLVANIKTPMFLL 283
++ E N+P T + ++ T F Q ++VA +TP +
Sbjct: 111 EKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIA 170
Query: 284 NAAYDAWQVNSY 295
A DAW +N Y
Sbjct: 171 GA--DAWTLNGY 180
>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
Complexed With Raffinose
Length = 388
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 182 NADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGMFLDAVDVSGGHTLRNMFA 241
NA + L + AG + +++ ++P++ +++ + AG+F D + ++N +A
Sbjct: 44 NAGEVLKTRVLAGDVPDVVN------IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYA 97
Query: 242 GVVSLQEVQKNLPITCTS---------------QLDPTSCFFPQ---NLVANIKTPMFLL 283
++ E N+P T + ++ T F Q ++VA +TP +
Sbjct: 98 EKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIA 157
Query: 284 NAAYDAWQVNSY 295
A DAW +N Y
Sbjct: 158 GA--DAWTLNGY 167
>pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
Length = 195
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
EG +LY + + +T + +A + L+ C G +AS+ C RDL+P+
Sbjct: 103 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 157
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
EG +LY + + +T + +A + L+ C G +AS+ C RDL+P+
Sbjct: 294 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 348
>pdb|3F6R|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|C Chain C, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6S|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F90|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
Length = 148
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 164 GQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGM 223
G + L D A+ + + A+L GCSA G+ + D+F LF + ++ AG
Sbjct: 30 GHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGL---AGR 86
Query: 224 FLDAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQ 260
+ A SG + V +++E K L T ++
Sbjct: 87 KVAAF-ASGDQEYEHFCGAVPAIEERAKELGATIIAE 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,691,504
Number of Sequences: 62578
Number of extensions: 405388
Number of successful extensions: 1128
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 6
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)