BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020823
         (321 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 119/256 (46%), Gaps = 17/256 (6%)

Query: 60  AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
             C DG+  GY++    GS    WL+ LEGG +C    NC  R +T R   S+K      
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTR 163

Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLM 176
             TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+
Sbjct: 164 TGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELL 223

Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLDAVDVSG 232
            KG+  A   LL+G SAGG   +L+ D   +L  +    + +V+ L+D+G FLD      
Sbjct: 224 GKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRR 283

Query: 233 GHTLRNMFAGVVS-----LQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFLLN 284
              +  +           ++     +P  C  Q    +  +CFF   +   ++ P+F++ 
Sbjct: 284 SDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQ 343

Query: 285 AAYDAWQVNSYLIFLT 300
             +D  Q+    + LT
Sbjct: 344 WLFDEAQLTVDNVHLT 359


>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 122/258 (47%), Gaps = 23/258 (8%)

Query: 61  VCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQLP 118
            C DG+  GY++    GS    WL+ LEGG +C    NC  R  T R   S++   +   
Sbjct: 100 TCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRT 157

Query: 119 FTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLMA 177
            TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+ 
Sbjct: 158 GTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELLG 217

Query: 178 KGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFL-------- 225
           +G+  A   LL+G SAGG   +L+ D   +   K      +V+ L+D+G FL        
Sbjct: 218 RGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHT 277

Query: 226 DAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFL 282
           D VD         +  G+     V   +P  C  Q    +  +CFF   +   ++ P+F+
Sbjct: 278 DCVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFV 334

Query: 283 LNAAYDAWQVNSYLIFLT 300
           +   +D  Q+    + LT
Sbjct: 335 VQWLFDEAQLTVDNVHLT 352


>sp|P33671|SDC3_RAT Syndecan-3 OS=Rattus norvegicus GN=Sdc3 PE=2 SV=3
          Length = 442

 Score = 32.3 bits (72), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+
Sbjct: 80  SGSGYFEQESGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDT 122


>sp|Q64519|SDC3_MOUSE Syndecan-3 OS=Mus musculus GN=Sdc3 PE=2 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+
Sbjct: 80  SGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDT 122


>sp|O59796|VPS3_SCHPO Vacuolar protein sorting-associated protein 3
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=vps3 PE=3 SV=2
          Length = 910

 Score = 31.2 bits (69), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 92  WCNTIRNCVYRKTTRRGSAKFMEKQL---PFTGILSNKAEENPDFFNWN 137
           WCN +  C+   +T  G + F+++ L   PF+  LS   E+ PD +N N
Sbjct: 812 WCNLLEKCI---STGDGCSDFIKELLYRRPFSYTLSYVCEQIPDHWNLN 857


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,363,614
Number of Sequences: 539616
Number of extensions: 5062517
Number of successful extensions: 14256
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14244
Number of HSP's gapped (non-prelim): 6
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)