Query 020824
Match_columns 321
No_of_seqs 196 out of 1305
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01444 fkbM_fam methyltrans 100.0 9.3E-28 2E-32 202.0 16.9 139 136-283 1-143 (143)
2 PF05050 Methyltransf_21: Meth 99.9 7.7E-25 1.7E-29 187.1 13.2 158 139-308 1-167 (167)
3 PF05575 V_cholerae_RfbT: Vibr 99.6 7.2E-15 1.6E-19 127.1 8.4 195 104-307 52-254 (286)
4 PF13383 Methyltransf_22: Meth 99.0 1.8E-09 3.8E-14 99.7 8.0 144 132-319 82-233 (242)
5 PHA01634 hypothetical protein 98.9 2.9E-08 6.3E-13 82.2 12.2 123 133-316 28-151 (156)
6 PF12847 Methyltransf_18: Meth 98.6 3.5E-07 7.6E-12 73.0 8.4 59 133-191 1-61 (112)
7 PF02475 Met_10: Met-10+ like- 98.5 2E-07 4.4E-12 83.7 7.6 77 110-189 81-159 (200)
8 COG2242 CobL Precorrin-6B meth 98.2 8.4E-06 1.8E-10 72.1 10.1 72 115-187 16-89 (187)
9 PRK07402 precorrin-6B methylas 98.2 9.7E-06 2.1E-10 72.0 10.3 72 115-187 22-95 (196)
10 TIGR00479 rumA 23S rRNA (uraci 98.0 7.8E-05 1.7E-09 74.2 13.8 139 126-318 285-425 (431)
11 PF06325 PrmA: Ribosomal prote 98.0 1.7E-05 3.7E-10 75.3 8.5 63 122-186 152-215 (295)
12 PRK11036 putative S-adenosyl-L 98.0 5.3E-05 1.1E-09 70.1 11.2 66 122-189 35-100 (255)
13 PRK08287 cobalt-precorrin-6Y C 98.0 4.2E-05 9.2E-10 67.3 10.1 73 115-188 13-87 (187)
14 COG2520 Predicted methyltransf 98.0 1.5E-05 3.3E-10 76.9 7.4 71 110-183 168-239 (341)
15 TIGR02469 CbiT precorrin-6Y C5 98.0 6.7E-05 1.4E-09 60.4 10.1 54 127-180 13-68 (124)
16 PRK00107 gidB 16S rRNA methylt 97.9 4.2E-05 9.1E-10 68.0 8.7 53 133-186 45-99 (187)
17 COG2263 Predicted RNA methylas 97.9 9.8E-05 2.1E-09 65.4 10.8 63 133-197 45-108 (198)
18 PRK13944 protein-L-isoaspartat 97.9 8.1E-05 1.8E-09 66.8 9.9 61 128-188 67-130 (205)
19 COG4123 Predicted O-methyltran 97.9 2.8E-05 6.1E-10 71.9 6.8 70 124-193 35-106 (248)
20 PRK00377 cbiT cobalt-precorrin 97.9 0.00011 2.3E-09 65.5 10.3 70 117-186 24-96 (198)
21 PF05175 MTS: Methyltransferas 97.9 0.0001 2.2E-09 64.2 9.8 76 110-187 9-86 (170)
22 TIGR00095 RNA methyltransferas 97.9 0.00013 2.8E-09 64.9 10.3 54 133-186 49-103 (189)
23 TIGR03704 PrmC_rel_meth putati 97.8 0.00091 2E-08 62.0 16.1 64 116-179 69-134 (251)
24 PRK11207 tellurite resistance 97.8 8.4E-05 1.8E-09 66.3 8.8 49 132-180 29-77 (197)
25 PF05185 PRMT5: PRMT5 arginine 97.8 0.0001 2.3E-09 73.9 10.3 76 116-191 165-250 (448)
26 PRK10909 rsmD 16S rRNA m(2)G96 97.8 0.00013 2.8E-09 65.5 9.9 66 115-180 35-101 (199)
27 TIGR00138 gidB 16S rRNA methyl 97.8 7.3E-05 1.6E-09 66.0 7.4 56 133-189 42-99 (181)
28 PRK01544 bifunctional N5-gluta 97.8 0.00031 6.7E-09 71.6 12.9 56 134-189 139-196 (506)
29 PRK13942 protein-L-isoaspartat 97.8 0.00016 3.5E-09 65.2 9.8 57 129-186 72-131 (212)
30 TIGR03533 L3_gln_methyl protei 97.8 0.00016 3.5E-09 68.3 10.1 76 114-189 102-179 (284)
31 PF13659 Methyltransf_26: Meth 97.8 8.7E-05 1.9E-09 59.6 7.1 57 134-190 1-58 (117)
32 TIGR00477 tehB tellurite resis 97.8 0.00012 2.5E-09 65.3 8.4 48 133-180 30-77 (195)
33 PRK03522 rumB 23S rRNA methylu 97.8 0.00013 2.7E-09 69.9 9.2 53 133-186 173-225 (315)
34 PRK15451 tRNA cmo(5)U34 methyl 97.7 0.00019 4.2E-09 66.1 10.0 59 132-190 55-117 (247)
35 COG4076 Predicted RNA methylas 97.7 5E-05 1.1E-09 67.3 5.1 56 133-189 32-87 (252)
36 TIGR02021 BchM-ChlM magnesium 97.7 0.00024 5.3E-09 64.0 9.8 56 132-187 54-109 (219)
37 TIGR02085 meth_trns_rumB 23S r 97.7 0.00086 1.9E-08 65.8 14.4 53 133-186 233-285 (374)
38 TIGR00536 hemK_fam HemK family 97.7 0.00022 4.8E-09 67.2 9.8 76 114-189 95-172 (284)
39 TIGR00080 pimt protein-L-isoas 97.7 0.00022 4.7E-09 64.3 9.3 59 129-188 73-134 (215)
40 PTZ00338 dimethyladenosine tra 97.7 0.0002 4.3E-09 68.1 9.1 60 130-189 33-92 (294)
41 PRK11805 N5-glutamine S-adenos 97.7 0.00026 5.6E-09 67.7 9.8 77 114-190 114-192 (307)
42 KOG1500 Protein arginine N-met 97.6 0.00012 2.6E-09 70.0 6.6 67 125-193 170-237 (517)
43 PRK04266 fibrillarin; Provisio 97.6 0.0019 4.2E-08 59.1 14.3 48 129-176 68-117 (226)
44 PRK00312 pcm protein-L-isoaspa 97.6 0.00037 8.1E-09 62.5 9.5 54 127-180 72-125 (212)
45 PF01596 Methyltransf_3: O-met 97.6 0.00038 8.2E-09 62.8 9.4 71 117-187 29-102 (205)
46 PF08003 Methyltransf_9: Prote 97.6 0.00021 4.5E-09 67.8 8.0 52 121-173 104-156 (315)
47 PRK00121 trmB tRNA (guanine-N( 97.6 0.00024 5.2E-09 63.6 8.1 54 133-187 40-95 (202)
48 PLN02781 Probable caffeoyl-CoA 97.6 0.00029 6.2E-09 64.7 8.5 65 122-186 57-124 (234)
49 smart00650 rADc Ribosomal RNA 97.6 0.00029 6.4E-09 61.0 8.1 45 132-176 12-56 (169)
50 PRK13168 rumA 23S rRNA m(5)U19 97.6 0.00038 8.1E-09 69.7 9.9 53 128-180 292-344 (443)
51 TIGR00537 hemK_rel_arch HemK-r 97.6 0.00031 6.7E-09 61.3 8.1 49 132-180 18-66 (179)
52 TIGR00406 prmA ribosomal prote 97.6 0.00041 8.9E-09 65.6 9.5 59 124-184 152-211 (288)
53 PRK00274 ksgA 16S ribosomal RN 97.5 0.0003 6.6E-09 65.9 8.3 56 130-189 39-94 (272)
54 PLN02476 O-methyltransferase 97.5 0.00084 1.8E-08 63.3 11.2 71 117-187 102-175 (278)
55 PRK14966 unknown domain/N5-glu 97.5 0.0012 2.6E-08 65.6 12.8 71 114-189 235-307 (423)
56 COG2264 PrmA Ribosomal protein 97.5 0.00023 5.1E-09 67.5 7.5 57 123-181 154-211 (300)
57 PRK07580 Mg-protoporphyrin IX 97.5 0.00069 1.5E-08 60.9 10.1 57 132-188 62-118 (230)
58 PRK00517 prmA ribosomal protei 97.5 0.00034 7.3E-09 64.7 7.9 49 132-180 118-167 (250)
59 PLN02396 hexaprenyldihydroxybe 97.5 0.0003 6.6E-09 67.7 7.8 56 133-188 131-186 (322)
60 COG2518 Pcm Protein-L-isoaspar 97.5 0.00049 1.1E-08 62.1 8.6 63 125-188 64-126 (209)
61 PRK14968 putative methyltransf 97.5 0.00051 1.1E-08 59.6 8.6 56 132-187 22-78 (188)
62 PRK12335 tellurite resistance 97.4 0.00056 1.2E-08 64.5 8.8 48 133-180 120-167 (287)
63 PRK14896 ksgA 16S ribosomal RN 97.4 0.00064 1.4E-08 63.2 9.0 56 131-189 27-82 (258)
64 TIGR00452 methyltransferase, p 97.4 0.0018 3.8E-08 62.2 12.0 41 132-172 120-161 (314)
65 TIGR00755 ksgA dimethyladenosi 97.4 0.00064 1.4E-08 62.9 8.7 56 131-189 27-82 (253)
66 TIGR00740 methyltransferase, p 97.4 0.001 2.2E-08 60.7 9.7 57 132-188 52-112 (239)
67 PF02353 CMAS: Mycolic acid cy 97.4 0.00059 1.3E-08 64.2 8.3 60 130-189 59-119 (273)
68 COG2230 Cfa Cyclopropane fatty 97.4 0.00075 1.6E-08 63.6 8.9 73 125-197 64-137 (283)
69 PF13847 Methyltransf_31: Meth 97.4 0.00072 1.6E-08 57.3 8.1 55 133-188 3-60 (152)
70 PLN02244 tocopherol O-methyltr 97.4 0.00097 2.1E-08 64.5 9.7 57 132-188 117-174 (340)
71 TIGR02752 MenG_heptapren 2-hep 97.4 0.0013 2.9E-08 59.4 10.0 59 128-187 40-101 (231)
72 PF01135 PCMT: Protein-L-isoas 97.4 0.00083 1.8E-08 60.8 8.3 58 130-188 69-129 (209)
73 TIGR02143 trmA_only tRNA (urac 97.4 0.00093 2E-08 65.1 9.2 51 135-186 199-249 (353)
74 PF13489 Methyltransf_23: Meth 97.3 0.00061 1.3E-08 57.2 6.9 49 122-170 10-59 (161)
75 PF03848 TehB: Tellurite resis 97.3 0.001 2.2E-08 59.5 8.4 49 132-180 29-77 (192)
76 KOG1499 Protein arginine N-met 97.3 0.00059 1.3E-08 65.6 6.9 61 133-194 60-121 (346)
77 TIGR00091 tRNA (guanine-N(7)-) 97.3 0.00071 1.5E-08 60.1 6.9 56 133-189 16-73 (194)
78 KOG2078 tRNA modification enzy 97.3 0.0002 4.3E-09 70.4 3.5 79 109-190 228-307 (495)
79 PTZ00146 fibrillarin; Provisio 97.3 0.0099 2.1E-07 56.5 14.8 42 132-173 131-175 (293)
80 PRK15128 23S rRNA m(5)C1962 me 97.3 0.0014 3.1E-08 64.8 9.5 55 133-187 220-276 (396)
81 TIGR03534 RF_mod_PrmC protein- 97.3 0.0015 3.3E-08 59.4 9.1 71 115-188 71-143 (251)
82 PRK15068 tRNA mo(5)U34 methylt 97.2 0.0011 2.5E-08 63.7 8.4 64 128-191 117-181 (322)
83 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0011 2.4E-08 61.7 8.2 64 122-189 20-83 (262)
84 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.0013 2.8E-08 61.4 8.4 61 127-188 65-128 (264)
85 PRK13255 thiopurine S-methyltr 97.2 0.0013 2.8E-08 59.8 8.1 57 115-172 20-76 (218)
86 PRK14967 putative methyltransf 97.2 0.002 4.4E-08 58.3 9.3 55 132-188 35-90 (223)
87 PTZ00098 phosphoethanolamine N 97.2 0.0029 6.3E-08 59.0 10.1 72 104-176 24-96 (263)
88 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0021 4.6E-08 62.7 9.1 51 135-186 208-258 (362)
89 TIGR01177 conserved hypothetic 97.1 0.0029 6.4E-08 60.8 9.7 64 118-181 167-230 (329)
90 PRK15001 SAM-dependent 23S rib 97.1 0.0021 4.6E-08 63.2 8.8 70 110-180 206-277 (378)
91 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0021 4.6E-08 68.0 9.1 64 122-188 530-595 (702)
92 TIGR03840 TMPT_Se_Te thiopurin 97.1 0.0021 4.6E-08 58.2 7.9 53 119-172 21-73 (213)
93 COG2227 UbiG 2-polyprenyl-3-me 97.1 0.0011 2.5E-08 60.8 6.1 48 133-180 59-106 (243)
94 PLN02585 magnesium protoporphy 97.1 0.0026 5.7E-08 61.1 8.7 59 119-177 128-188 (315)
95 PLN02672 methionine S-methyltr 97.0 0.01 2.2E-07 65.3 14.1 47 134-180 119-167 (1082)
96 PRK06202 hypothetical protein; 97.0 0.0045 9.7E-08 56.2 9.8 54 123-176 50-109 (232)
97 KOG2904 Predicted methyltransf 97.0 0.0033 7.2E-08 58.8 8.8 78 114-191 127-208 (328)
98 PRK14121 tRNA (guanine-N(7)-)- 97.0 0.0027 5.8E-08 62.6 8.7 65 123-189 113-179 (390)
99 COG0030 KsgA Dimethyladenosine 97.0 0.0027 6E-08 59.2 8.2 65 121-189 19-83 (259)
100 PRK13943 protein-L-isoaspartat 97.0 0.0035 7.6E-08 60.4 9.1 58 130-188 77-137 (322)
101 TIGR03587 Pse_Me-ase pseudamin 97.0 0.0022 4.8E-08 57.6 7.2 43 132-174 42-86 (204)
102 COG2265 TrmA SAM-dependent met 97.0 0.014 3E-07 58.5 13.3 150 109-313 267-420 (432)
103 PLN02589 caffeoyl-CoA O-methyl 97.0 0.0072 1.6E-07 56.1 10.5 68 120-187 66-136 (247)
104 PRK00216 ubiE ubiquinone/menaq 97.0 0.0049 1.1E-07 55.4 9.2 56 132-187 50-108 (239)
105 PHA03411 putative methyltransf 97.0 0.01 2.2E-07 55.9 11.5 42 133-174 64-107 (279)
106 PRK11727 23S rRNA mA1618 methy 97.0 0.0029 6.2E-08 60.9 8.0 56 133-188 114-172 (321)
107 PRK09489 rsmC 16S ribosomal RN 96.9 0.0043 9.3E-08 60.2 9.2 70 110-180 174-245 (342)
108 COG4122 Predicted O-methyltran 96.9 0.0049 1.1E-07 56.2 9.0 65 122-186 48-115 (219)
109 PRK14902 16S rRNA methyltransf 96.9 0.0034 7.4E-08 62.9 8.8 63 124-187 241-306 (444)
110 COG2890 HemK Methylase of poly 96.9 0.0043 9.4E-08 58.6 9.0 161 114-307 93-257 (280)
111 PRK10258 biotin biosynthesis p 96.9 0.0032 7E-08 57.8 7.9 44 132-175 41-84 (251)
112 PLN02233 ubiquinone biosynthes 96.9 0.0063 1.4E-07 56.7 9.9 49 127-175 67-118 (261)
113 COG2813 RsmC 16S RNA G1207 met 96.9 0.0082 1.8E-07 57.0 10.7 70 111-181 137-208 (300)
114 PF09445 Methyltransf_15: RNA 96.9 0.0022 4.8E-08 55.9 6.3 56 135-190 1-56 (163)
115 PRK14901 16S rRNA methyltransf 96.9 0.0039 8.5E-08 62.3 8.7 65 123-188 242-309 (434)
116 TIGR02716 C20_methyl_CrtF C-20 96.9 0.0052 1.1E-07 58.3 9.1 62 127-189 143-206 (306)
117 PF05958 tRNA_U5-meth_tr: tRNA 96.9 0.0026 5.6E-08 62.0 7.1 147 125-317 189-337 (352)
118 PF08704 GCD14: tRNA methyltra 96.9 0.0055 1.2E-07 56.9 8.9 61 128-188 35-98 (247)
119 PRK09328 N5-glutamine S-adenos 96.9 0.0063 1.4E-07 56.3 9.4 73 115-189 91-165 (275)
120 PF13679 Methyltransf_32: Meth 96.9 0.0034 7.5E-08 52.9 7.0 45 132-176 24-74 (141)
121 PRK04338 N(2),N(2)-dimethylgua 96.9 0.0038 8.2E-08 61.5 8.2 54 134-188 58-113 (382)
122 PF08241 Methyltransf_11: Meth 96.8 0.0025 5.5E-08 48.3 5.5 39 138-176 1-40 (95)
123 PRK04148 hypothetical protein; 96.8 0.0053 1.1E-07 51.8 7.5 54 121-174 4-58 (134)
124 PRK01683 trans-aconitate 2-met 96.8 0.0036 7.9E-08 57.6 7.1 44 132-175 30-75 (258)
125 PRK14904 16S rRNA methyltransf 96.8 0.0061 1.3E-07 61.1 9.2 63 125-188 242-307 (445)
126 PRK04457 spermidine synthase; 96.8 0.007 1.5E-07 56.5 8.8 56 132-187 65-122 (262)
127 PRK11873 arsM arsenite S-adeno 96.7 0.0075 1.6E-07 56.0 8.7 55 132-187 76-133 (272)
128 TIGR00563 rsmB ribosomal RNA s 96.7 0.0065 1.4E-07 60.6 8.7 58 123-180 228-287 (426)
129 TIGR00478 tly hemolysin TlyA f 96.7 0.005 1.1E-07 56.5 7.0 50 121-170 63-113 (228)
130 PRK08317 hypothetical protein; 96.6 0.015 3.3E-07 51.8 9.8 47 128-174 14-63 (241)
131 smart00828 PKS_MT Methyltransf 96.6 0.0075 1.6E-07 54.2 7.7 54 136-189 2-57 (224)
132 PF10294 Methyltransf_16: Puta 96.6 0.011 2.4E-07 51.7 8.3 47 132-179 44-92 (173)
133 PRK05134 bifunctional 3-demeth 96.6 0.015 3.2E-07 52.6 9.5 56 124-179 39-94 (233)
134 PRK00050 16S rRNA m(4)C1402 me 96.6 0.012 2.6E-07 56.0 9.0 73 113-192 3-78 (296)
135 PRK14103 trans-aconitate 2-met 96.6 0.0057 1.2E-07 56.4 6.6 50 123-173 20-71 (255)
136 PRK10901 16S rRNA methyltransf 96.6 0.011 2.4E-07 59.0 9.0 56 125-180 236-293 (427)
137 PF01209 Ubie_methyltran: ubiE 96.5 0.0069 1.5E-07 55.7 7.0 58 130-188 44-104 (233)
138 TIGR01983 UbiG ubiquinone bios 96.5 0.017 3.7E-07 51.7 9.3 48 133-180 45-92 (224)
139 PLN02336 phosphoethanolamine N 96.5 0.0087 1.9E-07 60.2 8.1 60 128-190 32-91 (475)
140 PRK14903 16S rRNA methyltransf 96.5 0.01 2.3E-07 59.3 8.6 57 124-180 228-287 (431)
141 PRK11705 cyclopropane fatty ac 96.5 0.011 2.3E-07 58.3 8.4 47 129-175 163-210 (383)
142 PLN02336 phosphoethanolamine N 96.5 0.021 4.6E-07 57.4 10.7 54 122-176 256-310 (475)
143 PRK05785 hypothetical protein; 96.4 0.0093 2E-07 54.4 7.2 41 133-173 51-92 (226)
144 cd02440 AdoMet_MTases S-adenos 96.4 0.012 2.5E-07 44.1 6.4 39 136-174 1-40 (107)
145 PF02390 Methyltransf_4: Putat 96.3 0.013 2.9E-07 52.3 7.1 56 133-189 17-74 (195)
146 KOG0820 Ribosomal RNA adenine 96.2 0.025 5.4E-07 53.1 8.7 58 132-189 57-114 (315)
147 COG2226 UbiE Methylase involve 96.2 0.035 7.6E-07 51.3 9.7 52 125-176 43-96 (238)
148 PRK11088 rrmA 23S rRNA methylt 96.1 0.022 4.8E-07 53.1 8.1 56 118-174 71-131 (272)
149 TIGR00308 TRM1 tRNA(guanine-26 96.1 0.038 8.2E-07 54.4 9.6 54 135-189 46-102 (374)
150 PF03602 Cons_hypoth95: Conser 96.1 0.024 5.2E-07 50.2 7.5 48 133-180 42-90 (183)
151 TIGR01934 MenG_MenH_UbiE ubiqu 96.0 0.042 9E-07 48.7 9.1 45 132-176 38-85 (223)
152 PRK11188 rrmJ 23S rRNA methylt 96.0 0.023 4.9E-07 51.2 7.3 34 132-165 50-86 (209)
153 TIGR02081 metW methionine bios 96.0 0.022 4.7E-07 50.4 6.8 40 133-172 13-53 (194)
154 KOG1227 Putative methyltransfe 95.9 0.0033 7.2E-08 59.5 1.4 55 132-186 193-249 (351)
155 PF13649 Methyltransf_25: Meth 95.9 0.022 4.7E-07 44.7 5.8 51 137-189 1-56 (101)
156 PRK06922 hypothetical protein; 95.8 0.04 8.6E-07 57.7 9.1 47 132-178 417-465 (677)
157 KOG1270 Methyltransferases [Co 95.8 0.011 2.4E-07 55.0 4.4 47 134-180 90-136 (282)
158 PF05971 Methyltransf_10: Prot 95.8 0.028 6.1E-07 53.6 7.0 56 134-189 103-161 (299)
159 COG2519 GCD14 tRNA(1-methylade 95.7 0.041 8.8E-07 51.1 7.8 123 129-308 90-215 (256)
160 TIGR03438 probable methyltrans 95.7 0.09 1.9E-06 50.0 10.3 46 132-177 62-110 (301)
161 TIGR00438 rrmJ cell division p 95.7 0.028 6E-07 49.4 6.3 43 124-166 23-68 (188)
162 PF05724 TPMT: Thiopurine S-me 95.7 0.036 7.8E-07 50.5 7.1 61 111-172 16-76 (218)
163 KOG3420 Predicted RNA methylas 95.4 0.029 6.3E-07 48.1 5.2 77 115-193 30-107 (185)
164 PLN03075 nicotianamine synthas 95.4 0.1 2.2E-06 49.8 9.4 63 123-186 114-181 (296)
165 PLN02490 MPBQ/MSBQ methyltrans 95.4 0.069 1.5E-06 51.9 8.3 44 132-175 112-157 (340)
166 TIGR02072 BioC biotin biosynth 95.4 0.06 1.3E-06 48.1 7.5 43 133-175 34-78 (240)
167 PRK13256 thiopurine S-methyltr 95.4 0.13 2.9E-06 47.1 9.7 62 111-173 22-83 (226)
168 PRK03612 spermidine synthase; 95.4 0.27 5.8E-06 50.5 13.0 45 132-176 296-342 (521)
169 KOG1663 O-methyltransferase [S 95.3 0.078 1.7E-06 48.5 7.9 65 124-188 64-131 (237)
170 PRK11760 putative 23S rRNA C24 95.3 0.054 1.2E-06 52.6 7.1 96 132-282 210-305 (357)
171 PF08123 DOT1: Histone methyla 95.2 0.067 1.5E-06 48.3 7.1 54 120-174 30-85 (205)
172 COG2521 Predicted archaeal met 95.0 0.079 1.7E-06 48.8 7.1 144 130-313 131-277 (287)
173 PF07021 MetW: Methionine bios 95.0 0.074 1.6E-06 47.5 6.7 48 124-173 6-54 (193)
174 PF08242 Methyltransf_12: Meth 94.8 0.0055 1.2E-07 47.7 -0.9 42 138-179 1-44 (99)
175 PF10672 Methyltrans_SAM: S-ad 94.7 0.23 5E-06 47.2 9.7 57 122-181 115-172 (286)
176 COG1092 Predicted SAM-dependen 94.5 0.16 3.4E-06 50.4 8.2 56 123-181 210-266 (393)
177 KOG2899 Predicted methyltransf 94.4 0.066 1.4E-06 49.6 5.0 44 133-176 58-103 (288)
178 COG0220 Predicted S-adenosylme 94.4 0.18 3.8E-06 46.3 7.9 53 134-187 49-103 (227)
179 PF04816 DUF633: Family of unk 94.3 0.13 2.9E-06 46.3 6.7 50 137-186 1-52 (205)
180 KOG2187 tRNA uracil-5-methyltr 94.3 0.077 1.7E-06 53.7 5.6 67 119-186 369-435 (534)
181 PHA03412 putative methyltransf 94.2 0.064 1.4E-06 49.5 4.6 43 133-175 49-96 (241)
182 PF05401 NodS: Nodulation prot 94.1 0.12 2.5E-06 46.5 5.9 69 122-193 32-100 (201)
183 PRK10742 putative methyltransf 94.1 0.24 5.3E-06 46.0 8.1 50 128-177 81-132 (250)
184 PF01728 FtsJ: FtsJ-like methy 93.9 0.084 1.8E-06 45.9 4.6 35 132-166 22-59 (181)
185 COG2384 Predicted SAM-dependen 93.9 2.3 4.9E-05 38.9 13.7 52 135-186 18-71 (226)
186 KOG1501 Arginine N-methyltrans 93.8 0.14 2.9E-06 51.2 6.0 56 134-189 67-123 (636)
187 KOG1271 Methyltransferases [Ge 93.7 0.6 1.3E-05 41.7 9.4 77 117-193 47-129 (227)
188 COG3897 Predicted methyltransf 93.7 0.15 3.2E-06 45.8 5.7 68 133-202 79-147 (218)
189 PRK00811 spermidine synthase; 93.4 0.32 6.9E-06 45.9 7.8 45 132-176 75-121 (283)
190 COG0742 N6-adenine-specific me 93.2 0.84 1.8E-05 40.7 9.6 66 121-186 29-97 (187)
191 KOG2651 rRNA adenine N-6-methy 93.1 0.29 6.3E-06 48.1 7.0 48 122-169 142-190 (476)
192 smart00138 MeTrc Methyltransfe 93.1 0.28 6E-06 45.8 6.8 68 108-175 70-152 (264)
193 PF05219 DREV: DREV methyltran 92.9 0.27 5.8E-06 46.0 6.3 41 133-173 94-134 (265)
194 COG0357 GidB Predicted S-adeno 92.8 0.29 6.2E-06 44.6 6.3 55 134-189 68-124 (215)
195 KOG1661 Protein-L-isoaspartate 92.7 0.28 6E-06 44.5 5.9 63 112-176 63-129 (237)
196 PRK11933 yebU rRNA (cytosine-C 92.7 0.58 1.3E-05 47.5 8.9 58 130-188 110-170 (470)
197 COG1189 Predicted rRNA methyla 92.3 0.3 6.4E-06 45.1 5.7 44 122-165 68-112 (245)
198 PF02527 GidB: rRNA small subu 92.2 0.51 1.1E-05 41.8 7.0 57 136-193 51-109 (184)
199 COG4106 Tam Trans-aconitate me 92.2 0.34 7.4E-06 44.3 5.8 51 123-174 21-73 (257)
200 KOG3010 Methyltransferase [Gen 92.1 0.27 5.9E-06 45.5 5.2 51 124-174 23-74 (261)
201 PF05891 Methyltransf_PK: AdoM 91.9 0.26 5.6E-06 44.9 4.8 59 133-192 55-114 (218)
202 PF00891 Methyltransf_2: O-met 91.9 0.52 1.1E-05 42.9 6.9 46 127-173 94-141 (241)
203 KOG4300 Predicted methyltransf 91.9 0.43 9.2E-06 43.4 6.1 51 134-185 77-128 (252)
204 PRK01544 bifunctional N5-gluta 91.5 0.51 1.1E-05 48.3 7.0 55 133-188 347-403 (506)
205 KOG3191 Predicted N6-DNA-methy 91.4 1.6 3.5E-05 38.9 9.0 54 134-189 44-100 (209)
206 KOG2730 Methylase [General fun 91.1 0.25 5.3E-06 45.2 3.8 63 133-195 94-156 (263)
207 TIGR00006 S-adenosyl-methyltra 90.8 1.7 3.6E-05 41.7 9.4 72 113-190 4-77 (305)
208 PF07757 AdoMet_MTase: Predict 90.8 0.24 5.3E-06 40.2 3.0 34 133-166 58-91 (112)
209 PF03141 Methyltransf_29: Puta 90.3 0.47 1E-05 48.1 5.3 49 117-165 101-149 (506)
210 KOG2915 tRNA(1-methyladenosine 90.2 1.6 3.5E-05 41.2 8.4 65 127-191 99-166 (314)
211 COG0293 FtsJ 23S rRNA methylas 89.7 0.69 1.5E-05 41.8 5.3 34 132-165 44-80 (205)
212 PF04445 SAM_MT: Putative SAM- 89.2 0.56 1.2E-05 43.2 4.5 45 132-176 74-118 (234)
213 PF02384 N6_Mtase: N-6 DNA Met 88.7 1 2.2E-05 42.5 6.1 68 110-180 26-102 (311)
214 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.6 3.5 7.6E-05 38.9 9.6 63 125-188 77-142 (283)
215 PF01170 UPF0020: Putative RNA 88.6 2.5 5.5E-05 37.0 8.1 66 117-182 12-88 (179)
216 PF06080 DUF938: Protein of un 88.4 1.5 3.3E-05 39.6 6.7 59 121-180 14-74 (204)
217 KOG2361 Predicted methyltransf 87.9 0.93 2E-05 42.0 5.0 44 136-179 74-121 (264)
218 PLN02366 spermidine synthase 87.8 2.6 5.6E-05 40.4 8.3 45 132-176 90-136 (308)
219 KOG1541 Predicted protein carb 87.8 1.2 2.6E-05 40.9 5.6 41 133-173 50-90 (270)
220 TIGR00417 speE spermidine synt 87.5 1.6 3.5E-05 40.7 6.6 45 132-176 71-117 (270)
221 PRK11783 rlmL 23S rRNA m(2)G24 87.4 7.9 0.00017 41.3 12.4 75 117-191 173-292 (702)
222 cd00315 Cyt_C5_DNA_methylase C 87.3 7.1 0.00015 36.6 10.8 137 136-310 2-140 (275)
223 PF09243 Rsm22: Mitochondrial 86.6 1.9 4.2E-05 40.4 6.6 60 115-174 12-77 (274)
224 PF05148 Methyltransf_8: Hypot 86.0 18 0.0004 33.0 12.1 132 121-319 60-191 (219)
225 PRK11524 putative methyltransf 86.0 3.1 6.6E-05 39.2 7.6 54 121-176 198-251 (284)
226 PF01555 N6_N4_Mtase: DNA meth 85.4 3.3 7.2E-05 36.3 7.2 53 118-172 178-230 (231)
227 PF01795 Methyltransf_5: MraW 84.8 3.4 7.3E-05 39.7 7.3 75 113-193 4-80 (310)
228 COG0144 Sun tRNA and rRNA cyto 84.7 6 0.00013 38.6 9.1 64 124-188 147-214 (355)
229 PF13578 Methyltransf_24: Meth 84.3 0.63 1.4E-05 36.6 1.8 29 138-166 1-34 (106)
230 COG3963 Phospholipid N-methylt 84.1 3.9 8.5E-05 36.1 6.7 49 127-175 42-93 (194)
231 KOG4058 Uncharacterized conser 83.1 2 4.4E-05 37.1 4.4 71 115-186 55-126 (199)
232 PLN02823 spermine synthase 83.0 4.9 0.00011 39.0 7.7 47 132-178 102-150 (336)
233 PRK01581 speE spermidine synth 81.7 3.3 7.2E-05 40.8 6.0 43 131-173 148-192 (374)
234 PF03291 Pox_MCEL: mRNA cappin 81.1 3.6 7.8E-05 39.9 6.0 43 133-175 62-105 (331)
235 PF07091 FmrO: Ribosomal RNA m 81.0 2.5 5.5E-05 39.3 4.7 58 122-179 93-153 (251)
236 PF12147 Methyltransf_20: Puta 80.6 14 0.00031 35.3 9.5 73 117-189 119-195 (311)
237 KOG1709 Guanidinoacetate methy 79.7 6.4 0.00014 36.2 6.6 45 132-176 100-145 (271)
238 PRK13699 putative methylase; P 79.6 8.2 0.00018 35.2 7.5 54 121-176 153-206 (227)
239 PF01269 Fibrillarin: Fibrilla 77.9 7.1 0.00015 35.8 6.4 43 132-174 72-117 (229)
240 COG1565 Uncharacterized conser 75.0 13 0.00028 36.5 7.7 44 133-176 77-130 (370)
241 PF02636 Methyltransf_28: Puta 74.6 7.8 0.00017 35.6 6.0 43 134-176 19-71 (252)
242 KOG4589 Cell division protein 73.1 5.2 0.00011 35.9 4.2 31 132-162 68-101 (232)
243 PF07279 DUF1442: Protein of u 70.8 46 0.00099 30.4 9.7 67 106-176 18-90 (218)
244 KOG3045 Predicted RNA methylas 70.0 22 0.00047 33.7 7.6 53 259-319 245-297 (325)
245 PF04989 CmcI: Cephalosporin h 69.7 15 0.00033 33.2 6.5 46 120-169 23-74 (206)
246 COG1889 NOP1 Fibrillarin-like 68.1 12 0.00026 34.0 5.4 55 122-176 63-121 (231)
247 KOG1540 Ubiquinone biosynthesi 66.8 34 0.00075 32.3 8.2 56 125-180 92-155 (296)
248 KOG0822 Protein kinase inhibit 64.1 23 0.0005 36.6 7.1 57 134-191 368-430 (649)
249 PF02005 TRM: N2,N2-dimethylgu 64.0 20 0.00043 35.4 6.6 56 133-188 49-108 (377)
250 COG0275 Predicted S-adenosylme 63.2 45 0.00097 32.1 8.5 65 122-189 13-80 (314)
251 TIGR02987 met_A_Alw26 type II 62.7 16 0.00036 37.3 6.0 46 134-179 32-87 (524)
252 KOG3987 Uncharacterized conser 62.6 1.6 3.5E-05 39.7 -1.2 41 133-173 112-152 (288)
253 PF07927 YcfA: YcfA-like prote 61.5 11 0.00025 26.0 3.3 26 295-320 2-27 (56)
254 COG0500 SmtA SAM-dependent met 60.3 21 0.00046 27.1 5.1 35 137-172 52-89 (257)
255 TIGR03439 methyl_EasF probable 57.4 1.1E+02 0.0024 29.5 10.3 55 132-187 75-135 (319)
256 PF04672 Methyltransf_19: S-ad 57.4 45 0.00097 31.4 7.4 56 123-178 58-118 (267)
257 COG1041 Predicted DNA modifica 55.5 59 0.0013 31.8 8.0 72 109-180 172-244 (347)
258 PF02532 PsbI: Photosystem II 54.4 35 0.00076 22.1 4.2 22 24-45 12-33 (36)
259 PRK10458 DNA cytosine methylas 49.5 1.1E+02 0.0024 31.2 9.3 42 134-175 88-130 (467)
260 KOG2912 Predicted DNA methylas 49.1 27 0.00059 33.9 4.5 52 138-189 107-160 (419)
261 KOG0257 Kynurenine aminotransf 48.5 44 0.00096 33.4 6.0 40 132-171 92-133 (420)
262 KOG3178 Hydroxyindole-O-methyl 48.5 31 0.00066 33.7 4.9 44 133-176 177-220 (342)
263 PTZ00357 methyltransferase; Pr 47.2 84 0.0018 33.9 8.0 40 135-174 702-747 (1072)
264 PF01739 CheR: CheR methyltran 45.6 51 0.0011 29.4 5.6 67 109-175 3-84 (196)
265 PF02737 3HCDH_N: 3-hydroxyacy 45.5 34 0.00074 29.8 4.4 38 139-176 4-43 (180)
266 PF10717 ODV-E18: Occlusion-de 44.3 55 0.0012 25.3 4.7 23 10-32 18-42 (85)
267 PF01564 Spermine_synth: Sperm 44.0 71 0.0015 29.4 6.5 46 132-177 75-122 (246)
268 COG4976 Predicted methyltransf 43.2 24 0.00053 32.8 3.1 41 132-172 124-164 (287)
269 COG0421 SpeE Spermidine syntha 42.3 92 0.002 29.5 7.0 41 135-175 78-120 (282)
270 KOG0024 Sorbitol dehydrogenase 42.3 54 0.0012 31.9 5.4 42 132-173 168-212 (354)
271 PF01234 NNMT_PNMT_TEMT: NNMT/ 42.2 30 0.00064 32.4 3.6 44 133-176 56-100 (256)
272 COG1724 Predicted RNA binding 41.9 41 0.00089 24.8 3.5 27 293-319 8-34 (66)
273 KOG3115 Methyltransferase-like 41.9 28 0.00062 31.7 3.3 45 133-177 60-106 (249)
274 PF03721 UDPG_MGDP_dh_N: UDP-g 41.2 38 0.00081 29.8 4.0 34 140-173 6-41 (185)
275 COG2933 Predicted SAM-dependen 40.9 26 0.00056 33.2 3.0 34 132-165 210-243 (358)
276 PRK09424 pntA NAD(P) transhydr 40.9 53 0.0011 33.8 5.5 41 133-173 164-206 (509)
277 PF00145 DNA_methylase: C-5 cy 40.8 58 0.0013 30.1 5.5 136 136-310 2-139 (335)
278 PRK07066 3-hydroxybutyryl-CoA 40.7 43 0.00093 32.3 4.6 41 135-175 8-50 (321)
279 PF03059 NAS: Nicotianamine sy 40.7 1.1E+02 0.0025 28.9 7.3 42 135-176 122-167 (276)
280 cd05188 MDR Medium chain reduc 40.6 1.3E+02 0.0028 26.5 7.5 42 132-173 133-176 (271)
281 PHA00007 E cell lysis protein 39.7 22 0.00047 27.2 1.9 14 56-69 53-66 (91)
282 cd08254 hydroxyacyl_CoA_DH 6-h 39.7 86 0.0019 29.0 6.5 42 132-173 164-207 (338)
283 COG1352 CheR Methylase of chem 39.3 99 0.0021 29.1 6.7 69 108-176 68-150 (268)
284 PF05206 TRM13: Methyltransfer 37.3 73 0.0016 29.8 5.5 33 132-164 17-56 (259)
285 COG3129 Predicted SAM-dependen 36.8 42 0.00091 31.3 3.6 167 132-309 77-255 (292)
286 KOG2360 Proliferation-associat 36.8 1E+02 0.0023 30.7 6.5 68 126-197 206-276 (413)
287 PRK07201 short chain dehydroge 36.6 3.1E+02 0.0068 28.4 10.6 91 101-193 324-431 (657)
288 PF00107 ADH_zinc_N: Zinc-bind 36.3 36 0.00079 27.0 2.9 30 144-173 2-32 (130)
289 TIGR00675 dcm DNA-methyltransf 35.8 60 0.0013 31.0 4.8 39 137-175 1-40 (315)
290 PRK07063 short chain dehydroge 35.4 1.5E+02 0.0032 26.5 7.2 62 133-194 6-70 (260)
291 KOG1201 Hydroxysteroid 17-beta 35.3 1.2E+02 0.0027 29.0 6.6 60 133-195 37-99 (300)
292 COG0116 Predicted N6-adenine-s 35.3 2E+02 0.0044 28.5 8.3 73 117-189 175-288 (381)
293 PF01656 CbiA: CobQ/CobB/MinD/ 33.6 2.2E+02 0.0047 24.0 7.6 56 120-175 82-138 (195)
294 PF11899 DUF3419: Protein of u 33.6 1.4E+02 0.0031 29.5 7.1 57 108-172 17-74 (380)
295 cd08283 FDH_like_1 Glutathione 33.2 1.1E+02 0.0024 29.6 6.3 45 130-174 181-228 (386)
296 COG4537 ComGC Competence prote 33.1 24 0.00053 28.3 1.3 28 4-32 7-34 (107)
297 PRK10611 chemotaxis methyltran 32.0 1.3E+02 0.0029 28.5 6.4 66 108-176 93-168 (287)
298 CHL00024 psbI photosystem II p 31.5 26 0.00057 22.6 1.0 21 25-45 13-33 (36)
299 PRK04176 ribulose-1,5-biphosph 31.4 1.1E+02 0.0023 28.3 5.5 44 122-166 14-59 (257)
300 cd02037 MRP-like MRP (Multiple 31.4 2.3E+02 0.005 23.8 7.3 58 119-176 54-114 (169)
301 PRK06667 motB flagellar motor 31.3 62 0.0014 29.9 4.0 37 1-37 1-39 (252)
302 KOG2940 Predicted methyltransf 30.6 1E+02 0.0022 28.9 5.0 41 133-173 72-113 (325)
303 PRK00536 speE spermidine synth 30.2 1.3E+02 0.0029 28.1 6.0 45 129-173 68-112 (262)
304 PRK06124 gluconate 5-dehydroge 29.7 2E+02 0.0043 25.5 6.9 59 133-193 10-71 (256)
305 KOG3924 Putative protein methy 28.9 65 0.0014 32.1 3.7 44 130-173 189-236 (419)
306 COG4798 Predicted methyltransf 28.8 58 0.0013 29.6 3.1 40 131-170 46-88 (238)
307 PF06962 rRNA_methylase: Putat 28.6 90 0.0019 26.5 4.1 34 157-190 1-34 (140)
308 PF05711 TylF: Macrocin-O-meth 28.3 1.2E+02 0.0026 28.3 5.2 69 244-321 176-248 (248)
309 PRK02655 psbI photosystem II r 27.6 34 0.00074 22.3 1.0 18 28-45 16-33 (38)
310 KOG2126 Glycosylphosphatidylin 27.5 1.2E+02 0.0026 33.2 5.7 80 59-145 47-137 (895)
311 COG4262 Predicted spermidine s 26.5 1.8E+02 0.004 29.0 6.3 45 133-177 289-335 (508)
312 cd03111 CpaE_like This protein 26.4 1.9E+02 0.0041 22.5 5.5 43 134-176 44-87 (106)
313 PF10686 DUF2493: Protein of u 26.3 2.6E+02 0.0057 20.6 5.9 44 121-164 20-66 (71)
314 COG1867 TRM1 N2,N2-dimethylgua 26.3 1.7E+02 0.0037 29.0 6.0 54 134-188 53-108 (380)
315 PRK07102 short chain dehydroge 26.0 2.6E+02 0.0056 24.6 7.0 59 136-195 3-64 (243)
316 COG1743 Adenine-specific DNA m 25.6 83 0.0018 34.1 4.0 45 132-176 89-133 (875)
317 KOG2793 Putative N2,N2-dimethy 25.5 1.2E+02 0.0026 28.3 4.7 41 134-175 87-128 (248)
318 PRK07062 short chain dehydroge 25.0 3.1E+02 0.0066 24.5 7.4 61 133-193 7-70 (265)
319 TIGR03371 cellulose_yhjQ cellu 24.8 3E+02 0.0066 24.3 7.2 53 121-173 103-156 (246)
320 KOG1122 tRNA and rRNA cytosine 24.5 1.7E+02 0.0037 29.6 5.7 53 129-181 237-292 (460)
321 COG1063 Tdh Threonine dehydrog 24.4 1.6E+02 0.0034 28.4 5.6 41 133-173 168-211 (350)
322 PRK06129 3-hydroxyacyl-CoA deh 24.3 1.1E+02 0.0023 28.9 4.3 37 137-173 5-43 (308)
323 cd00401 AdoHcyase S-adenosyl-L 24.1 2.2E+02 0.0048 28.5 6.6 39 133-171 201-241 (413)
324 COG0455 flhG Antiactivator of 24.0 5.1E+02 0.011 24.2 8.7 36 134-169 114-150 (262)
325 PRK09242 tropinone reductase; 23.8 3.1E+02 0.0067 24.3 7.1 61 133-193 8-71 (257)
326 PF07172 GRP: Glycine rich pro 23.8 79 0.0017 25.0 2.7 7 17-23 4-10 (95)
327 KOG1207 Diacetyl reductase/L-x 23.6 2.1E+02 0.0045 25.8 5.5 40 134-173 7-49 (245)
328 PRK08267 short chain dehydroge 23.1 2.8E+02 0.0061 24.6 6.7 54 136-193 3-59 (260)
329 COG5379 BtaA S-adenosylmethion 22.9 3.1E+02 0.0066 26.7 6.8 41 132-172 62-102 (414)
330 PRK10818 cell division inhibit 22.6 3.2E+02 0.007 24.8 7.1 53 122-174 103-156 (270)
331 COG1064 AdhP Zn-dependent alco 22.6 95 0.0021 30.3 3.6 43 132-174 165-209 (339)
332 PRK10927 essential cell divisi 22.2 1.2E+02 0.0027 29.2 4.1 29 12-40 30-58 (319)
333 PRK09880 L-idonate 5-dehydroge 22.0 1.9E+02 0.0041 27.3 5.5 41 133-173 169-212 (343)
334 PF13450 NAD_binding_8: NAD(P) 21.9 90 0.002 22.5 2.6 27 140-166 2-30 (68)
335 PRK05867 short chain dehydroge 21.6 3.3E+02 0.0072 24.1 6.9 44 133-176 8-54 (253)
336 PRK08293 3-hydroxybutyryl-CoA 21.4 1.4E+02 0.0031 27.7 4.5 39 136-174 5-45 (287)
337 PRK08339 short chain dehydroge 21.2 4.1E+02 0.0089 23.9 7.4 61 133-194 7-70 (263)
338 PRK06531 yajC preprotein trans 21.2 82 0.0018 25.8 2.4 19 123-144 32-50 (113)
339 PF03492 Methyltransf_7: SAM d 21.1 1.1E+02 0.0023 29.7 3.6 33 119-152 3-35 (334)
340 COG1255 Uncharacterized protei 20.9 1.4E+02 0.003 24.9 3.6 31 134-166 14-47 (129)
341 PF05046 Img2: Mitochondrial l 20.9 2.4E+02 0.0053 21.6 4.9 54 253-306 34-87 (87)
342 PF06564 YhjQ: YhjQ protein; 20.8 1.1E+02 0.0024 28.4 3.5 36 142-177 11-52 (243)
343 PRK08862 short chain dehydroge 20.7 3.4E+02 0.0074 24.0 6.7 43 134-176 5-50 (227)
344 CHL00175 minD septum-site dete 20.5 4.3E+02 0.0093 24.2 7.5 54 121-174 115-169 (281)
345 cd08261 Zn_ADH7 Alcohol dehydr 20.3 3E+02 0.0065 25.5 6.5 44 130-173 156-201 (337)
No 1
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=99.96 E-value=9.3e-28 Score=202.04 Aligned_cols=139 Identities=37% Similarity=0.522 Sum_probs=115.7
Q ss_pred EEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcccc
Q 020824 136 LVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVS 213 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~ 213 (321)
+++|||||.|.+++++++.+ ++|++|||+|.+++.+++|++.|+. .+++++++|+++++|+++|+.......++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~~g~~~~~~~~~~~~~s~~~ 79 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDRDGELEFNVSDDDTGNSSLL 79 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCCCCeEEEEECCCCCCceeee
Confidence 58999999999999999854 6899999999999999999999987 46999999999999999999865333333332
Q ss_pred ccCcccccccCceeeEEEEEEehhhhcCCC--CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824 214 ATGAKLAFKSNEEIALQVRSIPLDEVIPEA--EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEED 283 (321)
Q Consensus 214 ~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~--~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~ 283 (321)
.... ......++|+++|||+++++. .++++|||||||+|++||+|+.++|.+. +|.|++|+|
T Consensus 80 ~~~~-----~~~~~~~~v~~~~Ld~~l~~~~~~~i~~lKiDiEG~E~~vL~g~~~~l~~~---~~~i~~E~h 143 (143)
T TIGR01444 80 PTPD-----ADRESKVEVEVVTLDDLVEEFGLDKVDLLKIDVEGAELEVLRGAKETLLRK---RPGIVLEVH 143 (143)
T ss_pred cCCC-----cCCCceEEEEEEEHHHHHHHcCCCCCCEEEEeCCCchHHHHhChHHHHHHh---CCeEEEEeC
Confidence 2111 112345689999999999876 5899999999999999999999998765 699999997
No 2
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=99.92 E-value=7.7e-25 Score=187.08 Aligned_cols=158 Identities=32% Similarity=0.385 Sum_probs=78.9
Q ss_pred EECCCCc--hHHHHHH--H--cCCEEEEECCChHHHHHHHHh--hhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCc
Q 020824 139 DVGANVG--MASFAAA--V--MGFRVLSFEPVFENLQRICDG--VWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNS 210 (321)
Q Consensus 139 DIGAn~G--~~sl~~a--~--~g~~ViafEP~p~~~~~L~~n--~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s 210 (321)
|||||+| ..+.++. + .+++|++|||+|.+++.|++| +++|.....++++..|+++......+........+.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAVSDGSSFFFAEGDPDGSSSS 80 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-SEE-SS-EEEE---------
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeecCCCceeEEeeecCCCCcee
Confidence 8999999 5444443 3 358999999999999999999 888876556999999999944444444321111111
Q ss_pred cccccCcccccccCceeeEEEEEEehhhhcCCC-CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhh
Q 020824 211 AVSATGAKLAFKSNEEIALQVRSIPLDEVIPEA-EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQA 289 (321)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~-~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~ 289 (321)
.. ........++|+++|||+++++. +.||+|||||||+|++||+|+..+|++. +|.+++|.|... +.
T Consensus 81 ~~--------~~~~~~~~~~v~~~~ld~~~~~~~~~id~lkiDiEG~E~~vL~g~~~~l~~~---~~~~i~E~~~~~-~~ 148 (167)
T PF05050_consen 81 TV--------EPNDEGGEVEVPVITLDDILEENIPRIDLLKIDIEGAELEVLKGARELLKKC---RPKVIVEIHHNH-YG 148 (167)
T ss_dssp -------------------EEEEE-HHHH-SS-----SEEEE--SS-HHHHHHTTHHHHHHH-----EEEEE--S-----
T ss_pred ee--------cccCCCceEEEEEEEhHHHHhhcCCccEEEEEeCCCCHHHHhhCCcccHhHc---CcEEEEEEcCCc-cc
Confidence 00 00122345789999999998875 6899999999999999999999999887 466569999876 44
Q ss_pred cCCCHHHHHHHHHcCCCeE
Q 020824 290 SNSSAKEIREFLHSVGYHH 308 (321)
Q Consensus 290 ~~~~~~ei~~~L~~~GY~~ 308 (321)
.+....++.++|+++||++
T Consensus 149 ~~~~~~~i~~~L~~~Gy~~ 167 (167)
T PF05050_consen 149 RQESFREILDFLRDHGYRL 167 (167)
T ss_dssp -------------------
T ss_pred cccccccccccccccccCC
Confidence 4567889999999999974
No 3
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=99.57 E-value=7.2e-15 Score=127.12 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=144.8
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824 104 VRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 104 ~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
+++.....|..|.+...++.++-..+++ +.+++|||||+|.+.-.+|+ ..++++|+||..++-..++.|+.+|+.-
T Consensus 52 vqlnhalsyknpnfdlgmrhwivnhckh--dttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnpl 129 (286)
T PF05575_consen 52 VQLNHALSYKNPNFDLGMRHWIVNHCKH--DTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPL 129 (286)
T ss_pred hhhcchhccCCCCCccchhHhhhhhccC--CceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCcc
Confidence 4555566788998888888888887754 58999999999999988887 4699999999999999999999998754
Q ss_pred CceEEEEEeEecCcceEEEEeecCCCCCccccccCcccccccCce-----eeEEEEEEehhhhcCCCCCCcEEEEecCCc
Q 020824 182 DLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEE-----IALQVRSIPLDEVIPEAEPVLLLKIDVQGW 256 (321)
Q Consensus 182 ~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~-----~~v~V~~~tLD~ll~~~~~idlLKIDVEG~ 256 (321)
-.++-+.+|+|+.+|+--|.... +++... ++.|+.+.. ..-+|-++.|.++--.-..-.++|||.||+
T Consensus 130 vefhhfgcaigenegenifevye--fdnrvs-----slyfqkntdiadkvknsqvlvrklssldisptnsvvikidaega 202 (286)
T PF05575_consen 130 VEFHHFGCAIGENEGENIFEVYE--FDNRVS-----SLYFQKNTDIADKVKNSQVLVRKLSSLDISPTNSVVIKIDAEGA 202 (286)
T ss_pred eeeeecceeecccCCcceEEEEE--ecCccc-----eEEEeccCcHHHhhcchHHHHhhhhccccCCCceEEEEEcCCCc
Confidence 45556678899999986555432 222211 122222211 112455556666532223457999999999
Q ss_pred hHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHc-CCCe
Q 020824 257 EYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHS-VGYH 307 (321)
Q Consensus 257 E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~-~GY~ 307 (321)
|.++|....+.-+++.+-.-+|++|+.-.++++.+.++.++.+.+.+ .|-.
T Consensus 203 eieilnqiyeftekhngieyyicfefamghiqrsnrtfdeifniinskfgsk 254 (286)
T PF05575_consen 203 EIEILNQIYEFTEKHNGIEYYICFEFAMGHIQRSNRTFDEIFNIINSKFGSK 254 (286)
T ss_pred chhHHHHHHHHHhhcCCeEEEEEehhhhhhhhhccccHHHHHHHHhhcccCc
Confidence 99999999998888776445799999999999999999999998864 3433
No 4
>PF13383 Methyltransf_22: Methyltransferase domain
Probab=98.96 E-value=1.8e-09 Score=99.66 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=97.9
Q ss_pred CCCCEEEEECCCCch-HHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCC
Q 020824 132 GKNGLVVDVGANVGM-ASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRL 207 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~-~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~ 207 (321)
.++.+|+=+|-|.-. |-..+++ .| ++|++|||....-.... + ..++++++.++++++.....
T Consensus 82 ~~~C~vySfG~n~~~sFe~~m~~~~g~~C~V~~FD~~~~~~~~~~-----~--~~~~~f~~~gl~~~~~~~~~------- 147 (242)
T PF13383_consen 82 NDDCVVYSFGSNNDWSFEEEMAKRTGRGCEVHAFDPSMQNEDQPQ-----N--SDRIHFHKLGLGSKDSESIN------- 147 (242)
T ss_pred CCCeEEEEecCCCCcHHHHHHHHhhCCCCeEEEECCCcccccccc-----c--chhhHHHhccccCCcccccc-------
Confidence 356789999965433 4444443 45 99999998765432211 1 25788888888776643100
Q ss_pred CCccccccCcccccccCceeeEEEEEEehhhhcCCC----CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824 208 DNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEA----EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEED 283 (321)
Q Consensus 208 ~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~----~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~ 283 (321)
. . .+.||.+++++. ..||+|||||||+|+.||+... +.. ...|++|+|
T Consensus 148 ----------------~-~-----~~~tl~~i~~~lgH~~~~idiLKiDIEG~Ew~~L~~~l---~~~---~~Qi~iEiH 199 (242)
T PF13383_consen 148 ----------------P-K-----LVYTLSDIMKMLGHKGREIDILKIDIEGAEWTVLEPLL---ESG---VCQILIEIH 199 (242)
T ss_pred ----------------c-h-----hhccHHHHHHHhcCCCccccEEEEEcCccHHHHHHHHH---hcC---CcEEEEEEE
Confidence 0 0 045888887753 4799999999999999998654 333 358999999
Q ss_pred ccchhhcCCCHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824 284 EHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCT 319 (321)
Q Consensus 284 ~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~~ 319 (321)
..... .....++++.|+++||+++....+.++|.
T Consensus 200 ~~~~~--~~~~~~~l~~l~~~gfr~F~~e~N~~~~~ 233 (242)
T PF13383_consen 200 GWPSE--HREWYKLLQELEKAGFRLFNVEPNPWYCG 233 (242)
T ss_pred eCccc--hhHHHHHHHHHHHCCcEEEEecCChhhCc
Confidence 74211 12245799999999999999888876664
No 5
>PHA01634 hypothetical protein
Probab=98.90 E-value=2.9e-08 Score=82.19 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=89.3
Q ss_pred CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcc
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSA 211 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~ 211 (321)
.+.+|+||||++|..+++|+..|+ +|+|+||+|...+.+++|++.|.. ...|++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI------~DK~v~~~----------------- 84 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI------CDKAVMKG----------------- 84 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee------eeceeecc-----------------
Confidence 679999999999999999999996 699999999999999999886632 22222111
Q ss_pred ccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcC
Q 020824 212 VSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASN 291 (321)
Q Consensus 212 l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~ 291 (321)
.... +.++.|+.|||+||-|-.+=-+. |++.+ .-.+..|...
T Consensus 85 -----------------------eW~~---~Y~~~Di~~iDCeGCE~~l~v~~---l~ky~----q~ci~ihdwt----- 126 (156)
T PHA01634 85 -----------------------EWNG---EYEDVDIFVMDCEGCEEKLNVSM---LKKYK----QWCIGIHDWT----- 126 (156)
T ss_pred -----------------------cccc---cCCCcceEEEEccchHHhcCHHH---HHHHH----hheeeeehhh-----
Confidence 0111 35688999999999998764433 33331 3466666542
Q ss_pred CCHHHHHHHHHcCCCeEEEEeCCcc
Q 020824 292 SSAKEIREFLHSVGYHHCNQHGTDA 316 (321)
Q Consensus 292 ~~~~ei~~~L~~~GY~~~~~~G~~~ 316 (321)
.+.-++++-|...-|+..+.+|...
T Consensus 127 ~nrvel~rk~~g~~ftyvsddgre~ 151 (156)
T PHA01634 127 KNRVELMRKMEGATFTYVSDDGREI 151 (156)
T ss_pred hhHHHHHHHhcCcEEEEEccCCcEE
Confidence 3456888888888888777777554
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.55 E-value=3.5e-07 Score=73.03 Aligned_cols=59 Identities=25% Similarity=0.266 Sum_probs=52.0
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV 191 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al 191 (321)
|+..|+|||||.|.+++.+++ .+++|+++|++|..++..+++...++..+++++++.-+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 468999999999999999998 78999999999999999999986666667888877544
No 7
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.55 E-value=2e-07 Score=83.68 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
+.|+.|....+-+++... . .++.+|+|.-||+|.|++.+|+ .+.+|+|+|.||.+++.|++|+++|++.+++.++
T Consensus 81 kvyfs~rl~~Er~Ri~~~-v--~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~ 157 (200)
T PF02475_consen 81 KVYFSPRLSTERRRIANL-V--KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI 157 (200)
T ss_dssp TS---GGGHHHHHHHHTC-----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE
T ss_pred eEEEccccHHHHHHHHhc-C--CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 467778776655665443 3 4679999999999999999998 5689999999999999999999999998777766
Q ss_pred EE
Q 020824 188 EA 189 (321)
Q Consensus 188 ~~ 189 (321)
+.
T Consensus 158 ~~ 159 (200)
T PF02475_consen 158 NG 159 (200)
T ss_dssp ES
T ss_pred cC
Confidence 54
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.24 E-value=8.4e-06 Score=72.07 Aligned_cols=72 Identities=22% Similarity=0.158 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
|-+.++++.+.-..+...++++++|||||.|..++.++. +.++|+|||-+++..+.+++|.+..+. +|++++
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv 89 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVV 89 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 445566666666667778999999999999999998885 469999999999999999999987774 566654
No 9
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.22 E-value=9.7e-06 Score=71.96 Aligned_cols=72 Identities=21% Similarity=0.149 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
|-...++..++-..+...++.+++|+|||.|.++..+++ .+++|+++|++|...+.+++|++.++. ++++++
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~ 95 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVI 95 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEE
Confidence 344555665555566656789999999999999999886 358999999999999999999887765 345443
No 10
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.04 E-value=7.8e-05 Score=74.22 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecC
Q 020824 126 EKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVG 205 (321)
Q Consensus 126 ~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~ 205 (321)
...+...++..++|+|||.|.+++.+++.+.+|+++|.++.+++..++|...|++ +++++ ...
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~--------------~~~-- 347 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEF--------------LAG-- 347 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEE--------------EeC--
Confidence 3344445668999999999999999998778999999999999999999998876 33332 210
Q ss_pred CCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEec--CCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824 206 RLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDV--QGWEYHVLKGATKLLSRKKGESPYLIYEED 283 (321)
Q Consensus 206 ~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDV--EG~E~~VL~G~~~~L~~~k~~~p~IiiE~~ 283 (321)
+. .. .+.++.......|++-+|- .|...++|+...+ +.. ...+++..+
T Consensus 348 d~--~~-----------------------~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~----~~ivyvsc~ 397 (431)
T TIGR00479 348 TL--ET-----------------------VLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIE-LKP----ERIVYVSCN 397 (431)
T ss_pred CH--HH-----------------------HHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHh-cCC----CEEEEEcCC
Confidence 00 00 0001100112356777776 3667788875443 221 134556655
Q ss_pred ccchhhcCCCHHHHHHHHHcCCCeEEEEeCCccce
Q 020824 284 EHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHC 318 (321)
Q Consensus 284 ~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~ 318 (321)
+. ++..-...|.+.||++.....=|+|.
T Consensus 398 p~-------tlard~~~l~~~gy~~~~~~~~DmFP 425 (431)
T TIGR00479 398 PA-------TLARDLEFLCKEGYGITWVQPVDMFP 425 (431)
T ss_pred HH-------HHHHHHHHHHHCCeeEEEEEEeccCC
Confidence 43 34445666778999988877766664
No 11
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.04 E-value=1.7e-05 Score=75.31 Aligned_cols=63 Identities=30% Similarity=0.378 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
-++|..+.. ++.+|+|||||.|..++.+++.|+ +|+|+|-+|..++..++|.++|++..++.+
T Consensus 152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 345666653 568999999999999999999995 799999999999999999999998765544
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.02 E-value=5.3e-05 Score=70.05 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
..++..+. .++.+++|||||.|.++..+++.|.+|+++|+++...+..+++...+++.++++++..
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~ 100 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC 100 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc
Confidence 34444443 3568999999999999999999999999999999999999998877666556666554
No 13
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.02 E-value=4.2e-05 Score=67.28 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
|-..+.+...+-..++..++.+++|||||.|..+..+++. +++|+++|+++...+.+++|+..+++ .++++++
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~ 87 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIP 87 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEe
Confidence 4344444444444445557889999999999999999874 57999999999999999999887765 3455543
No 14
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=1.5e-05 Score=76.88 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=60.0
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhhhcCCCCc
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVWFNRVGDL 183 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~lN~~~~~ 183 (321)
+.|+.|....+-.+++... .+|.+|+|.=||+|.||+.+|+.|.. |+|+|-||..++.|++|+.+|++.+.
T Consensus 168 Kv~Fsprl~~ER~Rva~~v---~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~ 239 (341)
T COG2520 168 KVYFSPRLSTERARVAELV---KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGR 239 (341)
T ss_pred HeEECCCchHHHHHHHhhh---cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence 4677787776666665544 36899999999999999999998864 99999999999999999999998654
No 15
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.00 E-value=6.7e-05 Score=60.43 Aligned_cols=54 Identities=24% Similarity=0.184 Sum_probs=44.7
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
..+...++..++|+|||.|.++..+++. +.+|+++|+++...+..+++++.++.
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 68 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV 68 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 3333346789999999999999999873 57999999999999999998876654
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.95 E-value=4.2e-05 Score=68.01 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
++..++|||||.|..++.+++ ++++|+++|+++...+..+++.+.+++. ++++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~ 99 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTV 99 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEE
Confidence 478999999999999998886 5689999999999999999999888763 3444
No 17
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=9.8e-05 Score=65.44 Aligned_cols=63 Identities=30% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcce
Q 020824 133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGN 197 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~ 197 (321)
++.+|+|.|||.|..++.++-.| .+|+|||++|+..+.+++|...+ ..++.++.+=+++-.+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFRGK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcCCc
Confidence 67899999999999999999998 68999999999999999998752 24566655555444443
No 18
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=8.1e-05 Score=66.77 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=49.1
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.+...++..++|||||.|+.+..+++ . +++|+++|.++...+..++|+..++..+++++++
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~ 130 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH 130 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34445778999999999999998886 3 4799999999999999999988777644455544
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.89 E-value=2.8e-05 Score=71.91 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=62.1
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
+|.++........++|+|||.|..++.+|+. . ++|++||-++++++..++|+++|++..++++++.=+-+
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~ 106 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE 106 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH
Confidence 5667776667899999999999999999974 4 89999999999999999999999999999998876644
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.89 E-value=0.00011 Score=65.53 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
+.+++..+.-..+...++..++|+|||.|.+++.+++ . +.+|+++|.++..++..++|+..+++.+++++
T Consensus 24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~ 96 (198)
T PRK00377 24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVL 96 (198)
T ss_pred CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEE
Confidence 3344444433334456889999999999999998876 3 47999999999999999999887774345554
No 21
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.88 E-value=0.0001 Score=64.17 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=55.6
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
+.|..+.......-+++.+.. .++..++|+|||.|..++.+++.+ .+|+++|-++...+..++|+..|++.+ ++++
T Consensus 9 gvFs~~~~d~~t~lL~~~l~~-~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~ 86 (170)
T PF05175_consen 9 GVFSPPRLDAGTRLLLDNLPK-HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVV 86 (170)
T ss_dssp TSTTTTSHHHHHHHHHHHHHH-HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEE
T ss_pred CeeCCCCCCHHHHHHHHHHhh-ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccc
Confidence 445434433333333333333 267899999999999999999854 579999999999999999999998753 5554
No 22
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=0.00013 Score=64.94 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
++..++|++||.|..++.++..|+ +|+++|-++..++.+++|++.|+..+++++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence 578999999999999999999885 899999999999999999998876434443
No 23
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.84 E-value=0.00091 Score=62.04 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcC
Q 020824 116 DISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
+.+..++.++..+....+...++|+|||.|..++.+++ .+.+|+++|.+|...+..++|...|+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~ 134 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG 134 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 44443444444322122345899999999999999886 36799999999999999999988765
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.84 E-value=8.4e-05 Score=66.26 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.++..++|+|||.|..+.++++.|++|+++|+++..++..+++.+.+++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~ 77 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL 77 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3568999999999999999999999999999999999999988876655
No 25
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.83 E-value=0.0001 Score=73.90 Aligned_cols=76 Identities=29% Similarity=0.325 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHhcCC----CCCEEEEECCCCchHHHHHHHcC------CEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824 116 DISVTIQEILEKMKKEG----KNGLVVDVGANVGMASFAAAVMG------FRVLSFEPVFENLQRICDGVWFNRVGDLVT 185 (321)
Q Consensus 116 ~~~~~~~~~L~~~~~~~----~~~~vvDIGAn~G~~sl~~a~~g------~~ViafEP~p~~~~~L~~n~~lN~~~~~v~ 185 (321)
.|++.+.+.|....+.. ++.+|+|||||.|..+..+++.+ .+|+|+|.||..+..+++.+..|+++++|+
T Consensus 165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~ 244 (448)
T PF05185_consen 165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVT 244 (448)
T ss_dssp HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEE
T ss_pred HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEE
Confidence 45566666666665432 25799999999999988877643 589999999999999988878899988999
Q ss_pred EEEEeE
Q 020824 186 VYEAAV 191 (321)
Q Consensus 186 ~~~~Al 191 (321)
+++.=+
T Consensus 245 vi~~d~ 250 (448)
T PF05185_consen 245 VIHGDM 250 (448)
T ss_dssp EEES-T
T ss_pred EEeCcc
Confidence 988654
No 26
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.83 E-value=0.00013 Score=65.51 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
|..+...+.++..+....++.+++|+|||.|..++.++..+ .+|+++|-++..++.+++|++.|+.
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~ 101 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA 101 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 66655444555544332356899999999999999765444 6999999999999999999998875
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.78 E-value=7.3e-05 Score=66.01 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
++..++|||||.|..++.++.. +++|+++|+++..++.++++.+.+++ +++++++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~ 99 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNG 99 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEec
Confidence 4689999999999999998763 47999999999999999998887765 34555443
No 28
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.78 E-value=0.00031 Score=71.62 Aligned_cols=56 Identities=9% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 134 NGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...|+|+|||.|..++.+++ ++++|+++|.++...+..++|...|++.+++++++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~ 196 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS 196 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec
Confidence 46899999999999998875 468999999999999999999988887666766553
No 29
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.78 E-value=0.00016 Score=65.22 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=46.8
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
++..++..|+|||||.|+.+..+++. + ++|+++|++++..+..+++++.++. .++++
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~ 131 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEV 131 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEE
Confidence 34457899999999999999988863 3 7999999999999999999886665 34443
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.78 E-value=0.00016 Score=68.26 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=59.2
Q ss_pred CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
.|+.+..++..+...+...+...++|+|||.|..++.+++. +++|+++|.++..++..++|...|++.+++++++.
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 35566666666654443234578999999999999999873 68999999999999999999998887656766554
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.77 E-value=8.7e-05 Score=59.60 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=50.0
Q ss_pred CCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 134 NGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
|.+|+|+|||.|.+.+.+++.+ .+++++|-+|...+..+.|+..++...+++++..-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D 58 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD 58 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc
Confidence 4689999999999999999887 99999999999999999999998876666665543
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.76 E-value=0.00012 Score=65.27 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
++..++|+|||.|..+.++++.|++|+++|.++...+.++++.+.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~ 77 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL 77 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 467999999999999999999999999999999999999887765554
No 33
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.76 E-value=0.00013 Score=69.87 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
++..++|+|||.|.+++.+++.+.+|+++|.++..++..++|...|++ +++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~ 225 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQF 225 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEE
Confidence 568999999999999999999889999999999999999999998876 44444
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.75 E-value=0.00019 Score=66.13 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 132 GKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
.++..++|||||.|..+..+++ ++++|+++|++|.+.+..++++..++...+++++..-
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d 117 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD 117 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 4678999999999999887765 4689999999999999999998876665567776543
No 35
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=5e-05 Score=67.25 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
..+++.|+|||.|..|+.+|+...||+|+|-+|..+..+.+|+..|+. .++++++-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~g 87 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVG 87 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEec
Confidence 448999999999999999999888999999999999999999998887 57777543
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.71 E-value=0.00024 Score=63.96 Aligned_cols=56 Identities=21% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
.++.+++|||||.|.++..+++.+.+|+++|++|...+..+++...++...++++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~ 109 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 46799999999999999999988899999999999999999887765543344443
No 37
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.71 E-value=0.00086 Score=65.77 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=46.6
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
++..++|+|||.|.+++.++..+.+|+++|-++..++..++|.+.|++ +++++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~ 285 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSF 285 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEE
Confidence 457999999999999999998889999999999999999999988876 24443
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.70 E-value=0.00022 Score=67.16 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+|+++..++..+..+....+...++|+|||.|..++.+++ .+++|+++|.++...+..++|...|++.++++++..
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~ 172 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS 172 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 4566666666666554333336899999999999999987 358999999999999999999998887545666553
No 39
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.70 E-value=0.00022 Score=64.32 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=48.7
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
+...++..++|||||.|+.+..+++. .++|+++|.+|..++..++|+..+++ +++++..
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~ 134 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIV 134 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEE
Confidence 34457899999999999999999874 35799999999999999999887776 4565543
No 40
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.67 E-value=0.0002 Score=68.09 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=50.8
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...++++++|||||.|..|..+++.+.+|+++|.++..++.+++++..++..+++++++.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 335789999999999999999998888999999999999999999876554456777664
No 41
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.67 E-value=0.00026 Score=67.65 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
.|+++..+...+..+++..+...++|+|||.|..++.+++. +++|+++|.++..++..++|...|++.+++++++.-
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 34565555555554443222368999999999999999863 689999999999999999999988876667766543
No 42
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.62 E-value=0.00012 Score=70.00 Aligned_cols=67 Identities=33% Similarity=0.351 Sum_probs=54.4
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
+.+..+. .+.+|+|||||.|..|+++++.| .+|+|+|++. +.+..++.++-|.+.++|+++..-+-+
T Consensus 170 l~N~sDF-~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd 237 (517)
T KOG1500|consen 170 LENHSDF-QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED 237 (517)
T ss_pred Hhccccc-CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc
Confidence 3444433 68999999999999999999998 5899999975 777888888889988999987765543
No 43
>PRK04266 fibrillarin; Provisional
Probab=97.61 E-value=0.0019 Score=59.08 Aligned_cols=48 Identities=15% Similarity=0.019 Sum_probs=40.5
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+...++..|+|+|||.|.++..+++. +++|+++|.++..++.+.++..
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~ 117 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE 117 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence 44457899999999999999999874 4799999999999988776543
No 44
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.61 E-value=0.00037 Score=62.48 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=46.2
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.+++..++..++|||||.|+.+..+++.+.+|+++|.++...+..++++..+++
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~ 125 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL 125 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 344456789999999999999998888767999999999999999999876655
No 45
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.61 E-value=0.00038 Score=62.81 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
.....-++|..+.+......+++||++.|+-++++|+ . +++|+++|.+|+.++..++++...++.++|+++
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3333445555555433557999999999999999997 2 689999999999999999999988876666653
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.61 E-value=0.00021 Score=67.82 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHH
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICD 173 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~ 173 (321)
.+++...+- .-.|.+|+|||||.|+|+..|++.|+ .|++|||++..+-..+.
T Consensus 104 W~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 104 WDRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred HHHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHH
Confidence 345444443 34789999999999999999999886 69999999987766543
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.60 E-value=0.00024 Score=63.62 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=45.8
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
++..++|||||.|..+..+++ ++.+|+++|+++..++.++++...+++ .+++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~ 95 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLL 95 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEE
Confidence 568999999999999998876 357999999999999999999887765 455543
No 48
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.58 E-value=0.00029 Score=64.73 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
-++|..+.+..+...++|||++.|+-++++++ . +++|+++|.+|+.++..++|++.+++.+++++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~ 124 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINF 124 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 34555555445678999999999999998876 2 47999999999999999999998887554444
No 49
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.58 E-value=0.00029 Score=61.01 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=41.2
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
.+++.++|||||.|..+..+++.+.+|+++|.++..++.+++++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc
Confidence 467899999999999999999888899999999999999998864
No 50
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.58 E-value=0.00038 Score=69.74 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=47.3
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.+...++..++|+|||.|.+++.+++.+.+|+++|.++.+++..++|...|++
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34445678999999999999999998888999999999999999999988876
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.57 E-value=0.00031 Score=61.33 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.++..++|+|||.|..+..+++.+.+|+++|.+|..++..++|+..|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 66 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV 66 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 4567899999999999999998777999999999999999999987764
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.56 E-value=0.00041 Score=65.56 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=48.8
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCce
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLV 184 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v 184 (321)
.+..+. .++.+|+|||||.|..++.+++.| .+|+++|.+|..++..++|...|++..++
T Consensus 152 ~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~ 211 (288)
T TIGR00406 152 WLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL 211 (288)
T ss_pred HHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence 344443 356899999999999999988877 58999999999999999999988875433
No 53
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.55 E-value=0.0003 Score=65.90 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=46.0
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...+++.++|||||.|..|..+++.+.+|+++|.++..++.++++... +++++++.
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~ 94 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEG 94 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEC
Confidence 345778999999999999999998777999999999999999887531 35555544
No 54
>PLN02476 O-methyltransferase
Probab=97.55 E-value=0.00084 Score=63.32 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
......++|..+.+..+...++|||.+.|+.++++++ + +++|+++|.+|+.++..++|++.+++.++|+++
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3444445566666555678999999999999999997 2 579999999999999999999988876555553
No 55
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.55 E-value=0.0012 Score=65.56 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+|+.+..++.++..+ .++..++|+|||.|..++.+++ ++++|+++|.+|...+..++|.+.|+. ++++.+.
T Consensus 235 RpeTE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 235 RPETEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred CccHHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 355555555555443 2457999999999999998875 468999999999999999999987753 5665543
No 56
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00023 Score=67.54 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
+.|++..+ ++.+++|+|||.|..++.+++.|+ +|+++|-+|...+.-++|..+|++.
T Consensus 154 ~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 154 EALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred HHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 44666664 679999999999999999999996 6999999999999999999999874
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.53 E-value=0.00069 Score=60.94 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.++..|+|||||.|.++..+++.+.+|+++|+++..++..+++...++..+++++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~ 118 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEV 118 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE
Confidence 357899999999999999999888899999999999999998876555433455544
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.50 E-value=0.00034 Score=64.67 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.++..++|||||.|..++.+++.|. +|+++|.+|..++..++|...|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 3678999999999999998888775 599999999999999999988875
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.50 E-value=0.0003 Score=67.69 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=45.6
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
++..|+|||||.|.++..+++.|++|+++|+++..++..+++...++...+++++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~ 186 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC 186 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe
Confidence 56799999999999999999999999999999999999887765544333454443
No 60
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00049 Score=62.07 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=52.8
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
+-.++...+++.|++||+|.||.+..+|+...+|+++|=.+...+.-++|+...+.. ||++.+
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~ 126 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRH 126 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 334455678999999999999999999998779999999999999999998877763 455543
No 61
>PRK14968 putative methyltransferase; Provisional
Probab=97.50 E-value=0.00051 Score=59.62 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCc-eEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDL-VTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~-v~~~ 187 (321)
.++..++|+|||.|..+..+++.+.+|+++|.+++.++..++++..|+..++ +.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 78 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI 78 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE
Confidence 4678999999999999999988899999999999999999999988776432 4443
No 62
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.45 E-value=0.00056 Score=64.47 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
+++.++|||||.|..++++++.|++|+++|.++..++.++++...+++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 346999999999999999999999999999999999999988876654
No 63
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.45 E-value=0.00064 Score=63.20 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 131 EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 131 ~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
..++..++|||||.|..|..+++.+.+|+++|.++..++.+++++.. .+++++++.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~ 82 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEG 82 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEe
Confidence 34679999999999999999998888999999999999999987643 245666654
No 64
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.43 E-value=0.0018 Score=62.20 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHH
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRIC 172 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~ 172 (321)
.++.+|+|||||.|+++..++..|. +|+++||++..+...+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE 161 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 4678999999999999999888774 7999999998776543
No 65
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.42 E-value=0.00064 Score=62.90 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=46.3
Q ss_pred CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 131 EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 131 ~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
..++++++|||||.|..|..+++.+.+|+++|+++..++.++++... ..++++++.
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~ 82 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEG 82 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEEC
Confidence 35678999999999999999999888899999999999999877642 245665543
No 66
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.41 E-value=0.001 Score=60.74 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.++..++|||||.|.++..+++ ++++|+++|+++..++..++++...+...+++++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~ 112 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC 112 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 3678999999999999988876 36899999999999999988876444334565554
No 67
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.41 E-value=0.00059 Score=64.20 Aligned_cols=60 Identities=20% Similarity=0.111 Sum_probs=47.0
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+..+|..|+|||||+|..+.++++. |++|+++.-+++-.+..++.+...++.+++++...
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ 119 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 3468999999999999999999985 99999999999999999999888887777776554
No 68
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.00075 Score=63.63 Aligned_cols=73 Identities=18% Similarity=0.057 Sum_probs=61.2
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcce
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGN 197 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~ 197 (321)
+...++..+|.+++|||||+|..++++|+ .|.+|+++.-+++-++..++.+..-++..++++.-...-+-++.
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 33445567999999999999999999998 59999999999999999999888888876788877666665554
No 69
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.40 E-value=0.00072 Score=57.27 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCchHHHHHH-Hc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAA-VM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a-~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
++.+|+|+|||.|.++..++ +. +.+++++|.++..++..++....++.. ++++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~ 60 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQ 60 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEE
Confidence 56899999999999999999 43 689999999999999999988877764 566544
No 70
>PLN02244 tocopherol O-methyltransferase
Probab=97.38 E-value=0.00097 Score=64.52 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.++..|+|||||.|..+..+++ .|++|+++|.++..++..+++...+++.+++++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 4678999999999999999987 48999999999999999998887776655666544
No 71
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.37 E-value=0.0013 Score=59.37 Aligned_cols=59 Identities=15% Similarity=-0.070 Sum_probs=46.6
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
.+...++..++|||||.|.++..+++. +++|+++|.+|...+..+++...++. ++++++
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~ 101 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELV 101 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEE
Confidence 334456789999999999999988762 47999999999999999988775554 345443
No 72
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.36 E-value=0.00083 Score=60.80 Aligned_cols=58 Identities=24% Similarity=0.173 Sum_probs=46.5
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
+..++..|+|||+|.|+.+..+++. | ++|+++|.+|...+..+++++..+. .++++..
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~ 129 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVV 129 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEE
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEE
Confidence 3568899999999999999999984 4 5899999999999999999987776 3566644
No 73
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.35 E-value=0.00093 Score=65.06 Aligned_cols=51 Identities=22% Similarity=0.111 Sum_probs=44.7
Q ss_pred CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
..++|+|||.|.+++.+++...+|+++|.++.+++.+++|...|++. ++++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~ 249 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQI 249 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence 46999999999999988886679999999999999999999999873 4444
No 74
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.34 E-value=0.00061 Score=57.21 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=41.1
Q ss_pred HHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHH
Q 020824 122 QEILEKMKK-EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQR 170 (321)
Q Consensus 122 ~~~L~~~~~-~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~ 170 (321)
.+.+.++.. ..++..|+|||||.|.++..+++.|.+|+++|+++...+.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 344555553 3578999999999999999998889999999999998888
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.33 E-value=0.001 Score=59.47 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=41.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
-+.+.++|+|||.|-.++++|+.|+.|.|+|-++..++.+.+..+.+++
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l 77 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL 77 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence 3568999999999999999999999999999999999999877665655
No 76
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.29 E-value=0.00059 Score=65.63 Aligned_cols=61 Identities=31% Similarity=0.309 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR 194 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~ 194 (321)
++.+|+|||||.|..|+++|+.|+ +|+|+|...-. +.-.+.+..|++.+.|++...-+.+-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 679999999999999999999995 89999998755 77788888999987788777666553
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.28 E-value=0.00071 Score=60.08 Aligned_cols=56 Identities=14% Similarity=0.006 Sum_probs=46.6
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+..+++|||||.|.++..+++ ++++|+++|.++..++..+++...+++ .++++++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~ 73 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCG 73 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence 457999999999999998887 468999999999999999988887766 36665443
No 78
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.27 E-value=0.0002 Score=70.35 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=65.0
Q ss_pred cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCc-eEEE
Q 020824 109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDL-VTVY 187 (321)
Q Consensus 109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~-v~~~ 187 (321)
+..||.+.++.+-.++ ..+. .+|.++.|+=||+|.+++.+++.|++|+|++-||+.++.|+.|+.+|.+.+. |.++
T Consensus 228 skVYWnsRL~~Eherl-sg~f--k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~ 304 (495)
T KOG2078|consen 228 SKVYWNSRLSHEHERL-SGLF--KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIF 304 (495)
T ss_pred ceEEeeccchhHHHHH-hhcc--CCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeee
Confidence 3456666665544443 4444 4779999999999999999999999999999999999999999999998765 8888
Q ss_pred EEe
Q 020824 188 EAA 190 (321)
Q Consensus 188 ~~A 190 (321)
|+-
T Consensus 305 Nmd 307 (495)
T KOG2078|consen 305 NMD 307 (495)
T ss_pred ccc
Confidence 874
No 79
>PTZ00146 fibrillarin; Provisional
Probab=97.27 E-value=0.0099 Score=56.45 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=35.7
Q ss_pred CCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHH
Q 020824 132 GKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~ 173 (321)
.++.+|+|+||+.|+++..++. .| ++|+|+|.++...+.|.+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~ 175 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTN 175 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH
Confidence 4789999999999999999997 33 799999999887766554
No 80
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.26 E-value=0.0014 Score=64.76 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTVY 187 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~ 187 (321)
++..|+|+|||.|.+++.++..|+ +|+++|.++..++..++|+++|++. ++++++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i 276 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 568999999999999998777664 8999999999999999999999874 244443
No 81
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.26 E-value=0.0015 Score=59.42 Aligned_cols=71 Identities=24% Similarity=0.216 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
|+....+..++..+. ..+..++|+|||.|..+..+++. +.+|+++|.++..++..+++...+++. ++++.+
T Consensus 71 ~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~ 143 (251)
T TIGR03534 71 PDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQ 143 (251)
T ss_pred CChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEE
Confidence 344443444444432 24468999999999999999873 679999999999999999999877763 555544
No 82
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.25 E-value=0.0011 Score=63.67 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=43.9
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV 191 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al 191 (321)
.+..-++.+|+|||||.|+++..++..|. +|+++||++..+...+......+...++++....+
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence 33334678999999999999999998774 69999999987765433222111123566655443
No 83
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.25 E-value=0.0011 Score=61.70 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
++++..+ +..+++.|+|||+|.|..|..+.+.+.+|+++|.++..++.|++.+.. .+++++++.
T Consensus 20 ~~Iv~~~-~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~ 83 (262)
T PF00398_consen 20 DKIVDAL-DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNVEVING 83 (262)
T ss_dssp HHHHHHH-TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES
T ss_pred HHHHHhc-CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccceeeec
Confidence 4444433 334789999999999999999998889999999999999999987652 256777765
No 84
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.23 E-value=0.0013 Score=61.37 Aligned_cols=61 Identities=15% Similarity=-0.004 Sum_probs=50.1
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
..+...++.+|+|+||+.|..|..+++ + .++|+|+|.++..++.+++|++.+++ .++++.+
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~ 128 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTN 128 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEec
Confidence 344556789999999999999998876 3 36999999999999999999998876 3455543
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.22 E-value=0.0013 Score=59.84 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
.+....+.+.+..+. ..++..++|+|||.|..++++|..|++|+|||++|..++.+.
T Consensus 20 ~~p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 20 EEVNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence 333444445554332 246689999999999999999999999999999999999864
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=97.21 E-value=0.002 Score=58.30 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.+++.++|+|||.|..+..+++.+. +|+++|.++...+..++|...++. ++++++
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~ 90 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRR 90 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEE
Confidence 4678999999999999999988765 999999999999999999887765 355554
No 87
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.17 E-value=0.0029 Score=59.00 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824 104 VRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 104 ~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+..+.+..|..|.-.+..+.++..+ ...++..|+|||||.|..+..+++ .+++|+++|+++...+..+++..
T Consensus 24 ~e~~~g~~~~~~gg~~~~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 24 YEFIFGEDYISSGGIEATTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC
Confidence 4555576777776545566666654 445789999999999999888876 57899999999999998887643
No 88
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.13 E-value=0.0021 Score=62.75 Aligned_cols=51 Identities=20% Similarity=0.082 Sum_probs=44.7
Q ss_pred CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
..++|++||.|.+++.+++...+|+++|.++.+++.+++|+..|++. ++++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~ 258 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQI 258 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEE
Confidence 57999999999999988876679999999999999999999999863 4444
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.11 E-value=0.0029 Score=60.80 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824 118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
...+...+-.+....++.+++|+|||.|.+.+.++..|.+|+++|.++..++..++|+..+++.
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3444444445555567889999999999999888888999999999999999999998877663
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.11 E-value=0.0021 Score=63.21 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=52.1
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
+.|....+...-+-++..+- ...++.|+|+|||.|..++.+++. +.+|+++|.++..++..++|++.|+.
T Consensus 206 gVFs~~~LD~GtrllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 206 NVFSRTGLDIGARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred CccCCCCcChHHHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 44544444333333444442 234579999999999999999873 68999999999999999999998864
No 91
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.08 E-value=0.0021 Score=68.04 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEEEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTVYE 188 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~~ 188 (321)
+.++..+. ++..|+|+|||.|.+++.+++.|+ +|+++|-++..++..++|+++|++. .++++++
T Consensus 530 R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 530 RRMIGQMA---KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred HHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 34455444 468999999999999999999876 6999999999999999999999874 3455443
No 92
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.08 E-value=0.0021 Score=58.22 Aligned_cols=53 Identities=13% Similarity=-0.020 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
..+.+++..+.- .++..++|+|||.|..+.++|+.|+.|+++|.+|..++.+.
T Consensus 21 ~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 21 PLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF 73 (213)
T ss_pred HHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence 334445554321 36689999999999999999999999999999999999764
No 93
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.07 E-value=0.0011 Score=60.79 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=42.9
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
++..|+|||||.|..|..+|+.|++|.++|..+.+++.-+.--..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv 106 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV 106 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc
Confidence 679999999999999999999999999999999999998766555554
No 94
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.05 E-value=0.0026 Score=61.06 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824 119 VTIQEILEKMKKE--GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 119 ~~~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l 177 (321)
..++.++..+... .++..++|||||.|..+..+++.|++|+++|.++.+++..+++...
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKE 188 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 3344445444321 2568999999999999999999999999999999999998887653
No 95
>PLN02672 methionine S-methyltransferase
Probab=97.04 E-value=0.01 Score=65.33 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 134 NGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
+..++|+|||.|..++.+++. .++|+++|-+|..++..++|.+.|++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l 167 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNAL 167 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 468999999999999998873 47999999999999999999998865
No 96
>PRK06202 hypothetical protein; Provisional
Probab=97.04 E-value=0.0045 Score=56.24 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHH----cC--CEEEEECCChHHHHHHHHhhh
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV----MG--FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~g--~~ViafEP~p~~~~~L~~n~~ 176 (321)
.++...+...++..++|||||.|..+..+++ .| ++|+++|++|...+..+++..
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 3343333334678999999999999887764 23 699999999999998877654
No 97
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0033 Score=58.85 Aligned_cols=78 Identities=10% Similarity=0.211 Sum_probs=64.8
Q ss_pred CCchhHHHHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 114 KPDISVTIQEILEKMKKE--GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+|++++.++.+++.+.+. -++..++|+|||.|..|+.+++ +.++|+|+|-++..+....+|...+++.+++.++|.
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 457777777777665433 3567899999999999999987 469999999999999999999999999889999876
Q ss_pred eE
Q 020824 190 AV 191 (321)
Q Consensus 190 Al 191 (321)
-.
T Consensus 207 ~m 208 (328)
T KOG2904|consen 207 IM 208 (328)
T ss_pred cc
Confidence 44
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.03 E-value=0.0027 Score=62.60 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=52.4
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
.++..+. ...+..++|||||.|.+++.+|+ ++..++++|..+..++.+.+++..+++ .++.+++.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~ 179 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINY 179 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEC
Confidence 3444443 24567999999999999999987 468999999999999999999888887 46776643
No 99
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0027 Score=59.19 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+++++... ...+++.|++||+|.|..|..+++.+.+|+|||-|+..++.|++... ...++++++.
T Consensus 19 ~~kIv~~a-~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~ 83 (259)
T COG0030 19 IDKIVEAA-NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVING 83 (259)
T ss_pred HHHHHHhc-CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeC
Confidence 34444433 23468999999999999999999999999999999999999998764 1246776654
No 100
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.01 E-value=0.0035 Score=60.38 Aligned_cols=58 Identities=17% Similarity=0.057 Sum_probs=48.0
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
...++..|+|||||.|+.+..+++. + ++|+++|.++..++..++++..++. ++++++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~ 137 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVC 137 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEe
Confidence 3456789999999999999999873 3 5799999999999999999887776 4566654
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.99 E-value=0.0022 Score=57.64 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=38.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n 174 (321)
+++..|+|||||.|..+..+++. +.+++++|+++..++..+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh
Confidence 46688999999999999988764 68999999999999998765
No 102
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.014 Score=58.49 Aligned_cols=150 Identities=17% Similarity=0.084 Sum_probs=96.9
Q ss_pred cCCCCCCc--hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 109 GKPFRKPD--ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 109 ~~~~~~p~--~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
...|..+. ..+.+......+++..++++++|.=||+|.+++.+|+...+|+++|-+|+..+..++|.+.|+.. |+++
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f 345 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEF 345 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEE
Confidence 33555443 33334333444454457789999999999999999988899999999999999999999999984 3333
Q ss_pred EEEeEecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecC--CchHHHHHhh
Q 020824 187 YEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQ--GWEYHVLKGA 264 (321)
Q Consensus 187 ~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVE--G~E~~VL~G~ 264 (321)
. .++..... ... . +...+|.+-+|=- |.+-++++-.
T Consensus 346 ~---~~~ae~~~------------------------~~~----~-----------~~~~~d~VvvDPPR~G~~~~~lk~l 383 (432)
T COG2265 346 I---AGDAEEFT------------------------PAW----W-----------EGYKPDVVVVDPPRAGADREVLKQL 383 (432)
T ss_pred E---eCCHHHHh------------------------hhc----c-----------ccCCCCEEEECCCCCCCCHHHHHHH
Confidence 1 11111000 000 0 1124566666653 8888888766
Q ss_pred HHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCeEEEEeC
Q 020824 265 TKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHG 313 (321)
Q Consensus 265 ~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G 313 (321)
.+.-. ..++++-.+|. ++..=...|.+.||++-....
T Consensus 384 ~~~~p-----~~IvYVSCNP~-------TlaRDl~~L~~~gy~i~~v~~ 420 (432)
T COG2265 384 AKLKP-----KRIVYVSCNPA-------TLARDLAILASTGYEIERVQP 420 (432)
T ss_pred HhcCC-----CcEEEEeCCHH-------HHHHHHHHHHhCCeEEEEEEE
Confidence 65311 23577777764 455667788899997655443
No 103
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.96 E-value=0.0072 Score=56.09 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
..-++|..+++..+-..+++||...|+-++++++ .+++|+++|.+|+.++.-+++++..++.++|+++
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence 3445566665544567999999999999999986 2689999999999999999999877776666543
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.96 E-value=0.0049 Score=55.35 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=44.5
Q ss_pred CCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
.++.+++|||||.|.++..+++.+ .+++++|+++...+..+++...++...++++.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 108 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV 108 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEE
Confidence 367899999999999999988743 89999999999999998887654443344443
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=96.96 E-value=0.01 Score=55.91 Aligned_cols=42 Identities=21% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824 133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n 174 (321)
..+.|+|+|||.|..++.+++. +.+|+++|.+|.+++..+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n 107 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL 107 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence 4579999999999999888763 57999999999999988775
No 106
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.95 E-value=0.0029 Score=60.93 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCch-HHHHHHH-cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEE
Q 020824 133 KNGLVVDVGANVGM-ASFAAAV-MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYE 188 (321)
Q Consensus 133 ~~~~vvDIGAn~G~-~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~ 188 (321)
++..++|||+|.|. +.+.+++ .+++++|+|-+|..++..++|++.| ++.+++++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence 56899999999985 4555544 5899999999999999999999999 7877888764
No 107
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.95 E-value=0.0043 Score=60.24 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=52.5
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
+.|..+.....-+.++..+.. ...+.++|+|||.|..+..+++. +.+|+++|.++..++..++|++.|++
T Consensus 174 gvFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l 245 (342)
T PRK09489 174 GVFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL 245 (342)
T ss_pred CCCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 455555444333344444432 34568999999999999999874 47999999999999999999998876
No 108
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0049 Score=56.16 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--c-CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV--M-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
-.+|..+++......+++||...|+-++|+|. + .++++++|.+|+.++..++|++.-++.++|++
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 35566666656779999999999999999997 3 58999999999999999999998887655544
No 109
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.94 E-value=0.0034 Score=62.85 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=51.3
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
++...++..++..|+|+||+.|..++.+++ . +++|+++|.++..++.+++|++.+++. ++++.
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~ 306 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETK 306 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence 444455556789999999999999999886 3 479999999999999999999888763 35443
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0043 Score=58.57 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=91.5
Q ss_pred CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe-
Q 020824 114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA- 190 (321)
Q Consensus 114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A- 190 (321)
+|+++..++.++....... . .++|+|+|.|..++.+++.. ++|+|+|-+|...+..++|...|++ .++..+..-
T Consensus 93 r~dTe~Lve~~l~~~~~~~-~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dl 169 (280)
T COG2890 93 RPDTELLVEAALALLLQLD-K-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDL 169 (280)
T ss_pred CCchHHHHHHHHHhhhhcC-C-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeec
Confidence 3566665555553332222 2 79999999999999998743 7999999999999999999999987 455544442
Q ss_pred EecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhh
Q 020824 191 VSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSR 270 (321)
Q Consensus 191 lsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~ 270 (321)
...-.|+..+-+.. + ..++.. .....++.. .+++...+--+-.| +++.+...+...+
T Consensus 170 f~~~~~~fDlIVsN--P--PYip~~----------------~~~~~~~~~-~~EP~~Al~~g~dG--l~~~~~i~~~a~~ 226 (280)
T COG2890 170 FEPLRGKFDLIVSN--P--PYIPAE----------------DPELLPEVV-RYEPLLALVGGGDG--LEVYRRILGEAPD 226 (280)
T ss_pred ccccCCceeEEEeC--C--CCCCCc----------------ccccChhhh-ccCHHHHHccCccH--HHHHHHHHHhhHH
Confidence 22234444433311 0 111100 000111111 12222333333333 3344444443333
Q ss_pred hcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCC-Ce
Q 020824 271 KKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVG-YH 307 (321)
Q Consensus 271 ~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~G-Y~ 307 (321)
.....-.+++|... ....++.+.+.+.| |.
T Consensus 227 ~l~~~g~l~le~g~-------~q~~~v~~~~~~~~~~~ 257 (280)
T COG2890 227 ILKPGGVLILEIGL-------TQGEAVKALFEDTGFFE 257 (280)
T ss_pred HcCCCcEEEEEECC-------CcHHHHHHHHHhcCCce
Confidence 32112378999864 34568999999999 55
No 111
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.93 E-value=0.0032 Score=57.78 Aligned_cols=44 Identities=20% Similarity=0.065 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~ 175 (321)
.+...|+|+|||.|..+..+++.|.+|+++|.+|...+..+++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC
Confidence 35689999999999999988888999999999999998887653
No 112
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.93 E-value=0.0063 Score=56.67 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhh
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~ 175 (321)
.+....++..++|||||.|.++..+++. + ++|+++|+++.+.+..++..
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 3444457899999999999999988763 3 79999999999999887654
No 113
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0082 Score=57.01 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824 111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
.|....+...-+-+++.+-. ..+..++|+|||.|..++.+++. ..++..+|-|...++.-++|++.|+..
T Consensus 137 VFS~~~lD~GS~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred CCcCCCcChHHHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 34433333334445555543 44569999999999999999983 589999999999999999999999874
No 114
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.92 E-value=0.0022 Score=55.85 Aligned_cols=56 Identities=20% Similarity=0.058 Sum_probs=46.9
Q ss_pred CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
.+++|+-||.|-.++.||+...+|+|+|-+|..++.++.|.+..++.++|.+++.=
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD 56 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGD 56 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCC
Confidence 37999999999999999999899999999999999999999998887788876653
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.89 E-value=0.0039 Score=62.30 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.++...+...++..|+|+||+.|..|+.+++ + .++|+|+|.++...+.+++|+..+++. ++++.+
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~ 309 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILA 309 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 3444455666789999999999999998886 3 379999999999999999999988763 455543
No 116
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.88 E-value=0.0052 Score=58.27 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...+..++..++|||||.|.++..+++ ++.+++++|. |...+..+++++..++.++++++..
T Consensus 143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~ 206 (306)
T TIGR02716 143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV 206 (306)
T ss_pred HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEec
Confidence 334445678999999999999998887 4689999996 8888998888887777666766554
No 117
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.88 E-value=0.0026 Score=61.98 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=83.9
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeec
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLV 204 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~ 204 (321)
...+++..++ .++|+=||+|.+|+.+|+...+|+++|-++.+++..++|..+|++ ++++++...+.+-...+
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~------ 260 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL------ 260 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH------
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH------
Confidence 3344443333 799999999999999999889999999999999999999999998 46666543332211100
Q ss_pred CCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEec--CCchHHHHHhhHHhhhhhcCCCCEEEEEE
Q 020824 205 GRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDV--QGWEYHVLKGATKLLSRKKGESPYLIYEE 282 (321)
Q Consensus 205 ~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDV--EG~E~~VL~G~~~~L~~~k~~~p~IiiE~ 282 (321)
... -.+ ..+..+-.....+|.+-+|= .|.+..+++-. .+. ..+|++-.
T Consensus 261 ---~~~--------r~~------------~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~----~~~---~~ivYvSC 310 (352)
T PF05958_consen 261 ---AKA--------REF------------NRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI----KKL---KRIVYVSC 310 (352)
T ss_dssp ---CCS---------GG------------TTGGGS-GGCTTESEEEE---TT-SCHHHHHHH----HHS---SEEEEEES
T ss_pred ---Hhh--------HHH------------HhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH----hcC---CeEEEEEC
Confidence 000 000 01122111112456666665 48887777633 333 24678888
Q ss_pred cccchhhcCCCHHHHHHHHHcCCCeEEEEeCCccc
Q 020824 283 DEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAH 317 (321)
Q Consensus 283 ~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~ 317 (321)
+|..+. .|+. .|.+ ||++....+-|.|
T Consensus 311 nP~tla------RDl~-~L~~-~y~~~~v~~~DmF 337 (352)
T PF05958_consen 311 NPATLA------RDLK-ILKE-GYKLEKVQPVDMF 337 (352)
T ss_dssp -HHHHH------HHHH-HHHC-CEEEEEEEEE-SS
T ss_pred CHHHHH------HHHH-HHhh-cCEEEEEEEeecC
Confidence 775433 3454 4544 9998776665554
No 118
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.87 E-value=0.0055 Score=56.89 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=47.8
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.++..+|++|++.|.|.|..|..+++ +.++|+.||-..+.++..++|++.+++.+++++.+
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~ 98 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH 98 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence 34456899999999999999999997 34899999999999999999999888765566544
No 119
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.87 E-value=0.0063 Score=56.33 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=52.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
|+.+..++.++.. ....++..++|+|||.|..+..+++. ..+|+++|.++..++..++|.. +....++++++.
T Consensus 91 ~~te~l~~~~~~~-~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~ 165 (275)
T PRK09328 91 PETEELVEWALEA-LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG 165 (275)
T ss_pred CCcHHHHHHHHHh-ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc
Confidence 4444433443322 22346689999999999999998873 5899999999999999999987 333345666554
No 120
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.87 E-value=0.0034 Score=52.89 Aligned_cols=45 Identities=24% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCEEEEECCCCchHHHHHHH------cCCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAV------MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~------~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
.+...+||+|||.|+.+..++. .+.+|+++|-++...+...+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 5779999999999999998877 47899999999998877766544
No 121
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.86 E-value=0.0038 Score=61.51 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 134 NGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
+.+++|++||.|..++.+++ .+ .+|+++|-+|..++.+++|+++|++. ++++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~ 113 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFN 113 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEh
Confidence 46899999999999999986 44 48999999999999999999999874 444433
No 122
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.85 E-value=0.0025 Score=48.29 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=34.0
Q ss_pred EEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhh
Q 020824 138 VDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 138 vDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+|+|||.|.++..+++. +.+|+++|+++...+..++...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc
Confidence 79999999999999987 8999999999999999988755
No 123
>PRK04148 hypothetical protein; Provisional
Probab=96.81 E-value=0.0053 Score=51.76 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCch-HHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGM-ASFAAAVMGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~-~sl~~a~~g~~ViafEP~p~~~~~L~~n 174 (321)
+.++|.......++..++|||+|.|. .+..+++.|..|+|+|-+|...+..+++
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 44455555544466889999999997 8888888999999999999988777654
No 124
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.80 E-value=0.0036 Score=57.60 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~ 175 (321)
.++..++|||||.|.++..+++ .+.+|+++|+++..++..+++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC
Confidence 4678999999999999998886 3689999999999999887653
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.79 E-value=0.0061 Score=61.15 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=50.2
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
...++...++..|+|+|||.|..|..+++ . +++|+++|.++..++.+++|+..+++ ++++++.
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~ 307 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIE 307 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEe
Confidence 33445556789999999999999988876 3 47999999999999999999987776 3455543
No 126
>PRK04457 spermidine synthase; Provisional
Probab=96.77 E-value=0.007 Score=56.53 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=45.2
Q ss_pred CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
++...++|||+|.|..+.++++ ++.+|+++|.+|..++..++++..++..++++++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~ 122 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVI 122 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE
Confidence 4557899999999999998876 4689999999999999999887665433455554
No 127
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.72 E-value=0.0075 Score=56.04 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=44.7
Q ss_pred CCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
.++.+|+|||||.|..++.+++ .| ++|+++|+++...+..+++...++. +++++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~ 133 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFR 133 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEE
Confidence 5789999999999999887775 34 6899999999999999998876665 355443
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.71 E-value=0.0065 Score=60.55 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c-CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV-M-GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~-g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.++...+...++.+|+|+||+.|..|..+++ . +++|+|+|.++..++.+++|++.+++
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~ 287 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL 287 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3455556666889999999999999999987 4 48999999999999999999987765
No 129
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.68 E-value=0.005 Score=56.49 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHH
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQR 170 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~ 170 (321)
+..++..+--.-++.+++|+||+.|.+|..+++.| .+|+|+|.++..+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 34445444222367899999999999999999987 589999999965543
No 130
>PRK08317 hypothetical protein; Provisional
Probab=96.64 E-value=0.015 Score=51.84 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=39.6
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHh
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n 174 (321)
.+...++..|+|+|||.|.++..+++ . +++|+++|+++...+..+++
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34445788999999999999998876 3 47999999999999888776
No 131
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.62 E-value=0.0075 Score=54.15 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 136 LVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
.|+|||||.|.++..+++. +.+|+++|.++...+..++++...++.+++++...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~ 57 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYR 57 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEec
Confidence 5899999999999988873 58999999999999999998877666666666554
No 132
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.59 E-value=0.011 Score=51.70 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
.++..|+++|||.|..++.+++. +.+|++=|-++ ..+.++.|++.|+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence 47799999999999999999997 57999999888 9999999999986
No 133
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.59 E-value=0.015 Score=52.60 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
++.......++..++|||||.|..+..+++.+.+|+++|+++...+..+++...++
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~ 94 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG 94 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC
Confidence 34444433467899999999999999888888999999999999998888776544
No 134
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.56 E-value=0.012 Score=56.01 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+.|.+ +++++..+. ..+++++||+++|.|.+|..+++. .++|+|||-+|..++..++.+.. .+++++++.
T Consensus 3 H~pVl---l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~ 75 (296)
T PRK00050 3 HIPVL---LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHG 75 (296)
T ss_pred Ccccc---HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeC
Confidence 34555 344555543 346789999999999999999873 38999999999999998877542 256777666
Q ss_pred eEe
Q 020824 190 AVS 192 (321)
Q Consensus 190 Als 192 (321)
-..
T Consensus 76 ~f~ 78 (296)
T PRK00050 76 NFS 78 (296)
T ss_pred CHH
Confidence 443
No 135
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.55 E-value=0.0057 Score=56.41 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHH
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~ 173 (321)
.++..+ ...++..|+|||||.|.++..+++. +++|+++|+++...+..++
T Consensus 20 ~ll~~l-~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 20 DLLARV-GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHhC-CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 444443 2346789999999999999988874 7899999999998887754
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.55 E-value=0.011 Score=59.01 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
....+...++..|+|+|||.|..++.+++. +++|+++|.++..++.+++|...+++
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL 293 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 333455568899999999999999998874 37999999999999999999987765
No 137
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.55 E-value=0.0069 Score=55.66 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=40.5
Q ss_pred cCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
...++..|+|+|||.|..+..+++ . +++|+++|+++.+.+..++.....+. .+++++.
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~ 104 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQ 104 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEE
Confidence 335788999999999999998876 3 47999999999999999988876554 3566654
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.52 E-value=0.017 Score=51.71 Aligned_cols=48 Identities=23% Similarity=0.143 Sum_probs=42.2
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
.+.+++|+|||.|.++..+++.+.+++++|+++..++..+++...++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 478999999999999998888888999999999999998888775543
No 139
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.51 E-value=0.0087 Score=60.23 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=44.0
Q ss_pred HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
.+...++..++|||||.|.++..+++.+.+|+++|+++.+++..++ .++..++++++..-
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d 91 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCAD 91 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEec
Confidence 3333456899999999999999999888899999999998876432 33322455554443
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.50 E-value=0.01 Score=59.30 Aligned_cols=57 Identities=19% Similarity=0.087 Sum_probs=48.3
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
++..+++..++..|+|+||+.|.-|+.++. + +++|+|+|.++..++.+++|++..++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~ 287 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL 287 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 444455666889999999999999998886 3 58999999999999999999887765
No 141
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=96.48 E-value=0.011 Score=58.32 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=41.1
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhh
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~ 175 (321)
+...++..++|||||.|..+..+++ .|++|+++|.++..++..+++.
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 3345788999999999999998887 5899999999999999988775
No 142
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.47 E-value=0.021 Score=57.45 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+.++..+. ..++..|+|||||.|..+..+++ .|++|+++|+++..++..+++..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI 310 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh
Confidence 34444432 35678999999999999988886 58899999999999988877653
No 143
>PRK05785 hypothetical protein; Provisional
Probab=96.45 E-value=0.0093 Score=54.39 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~ 173 (321)
++..++|||||.|..+..+++. +++|+++|+++.+.+..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh
Confidence 4689999999999999998886 6899999999999887653
No 144
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.38 E-value=0.012 Score=44.14 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=34.3
Q ss_pred EEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824 136 LVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n 174 (321)
+++|+|||.|..+..+++ .+.+++++|+++...+..++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 40 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA 40 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 479999999999998887 568999999999999888753
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.28 E-value=0.013 Score=52.33 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+..++||||||.|.+.+.+|+ ++..++++|.....+....+.+...++ +|+.+++.
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~ 74 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRG 74 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEc
Confidence 345999999999999999986 679999999999999998888887777 67888775
No 146
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.23 E-value=0.025 Score=53.08 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
.+.+++++||-|.|..|..+...|.+|+|+|-+|.++..|.+.++--..+++.+++..
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~g 114 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHG 114 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEec
Confidence 4789999999999999999999999999999999999999987763332344444443
No 147
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.22 E-value=0.035 Score=51.27 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
+-.....++|..++|||||.|..++.+++. | ++|+++|.++.+.+.-++...
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~ 96 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK 96 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence 333443347899999999999999999984 3 899999999999999887655
No 148
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.13 E-value=0.022 Score=53.14 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-----CCEEEEECCChHHHHHHHHh
Q 020824 118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-----GFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-----g~~ViafEP~p~~~~~L~~n 174 (321)
.+.+.+.+...+. .+...++|||||.|.++..+++. ++.|+++|+++..++..+++
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 3334444554443 24578999999999999888752 24899999999999887654
No 149
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.07 E-value=0.038 Score=54.38 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=46.6
Q ss_pred CEEEEECCCCchHHHHHHHc--C-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 135 GLVVDVGANVGMASFAAAVM--G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~--g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
-.++|..||.|..++.+++. | .+|+++|-||..++.+++|+++|+.. ++++.+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~ 102 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNE 102 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEch
Confidence 58999999999999999874 5 58999999999999999999999873 4555544
No 150
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.06 E-value=0.024 Score=50.18 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824 133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
++..|+|+=||.|...+.+...| .+|+.+|-++..++.+++|++.-+.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~ 90 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL 90 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999888 4899999999999999999886554
No 151
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.05 E-value=0.042 Score=48.70 Aligned_cols=45 Identities=20% Similarity=0.016 Sum_probs=38.7
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~ 176 (321)
.++..++|+|||.|.++..+++. + .+++++|+++...+..+++..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 46789999999999999988874 3 599999999999998887654
No 152
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.01 E-value=0.023 Score=51.24 Aligned_cols=34 Identities=29% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCCh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVF 165 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p 165 (321)
.++..|+|||||.|.++..+++. +++|+++|++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 46789999999999999988873 37999999998
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.96 E-value=0.022 Score=50.35 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=34.5
Q ss_pred CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~ 172 (321)
++++++|||||.|.++..+++ .+.+++++|+++.+++..+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV 53 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH
Confidence 568999999999999988875 4678999999999887764
No 154
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.92 E-value=0.0033 Score=59.46 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCchHHHHHH-HcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 132 GKNGLVVDVGANVGMASFAAA-VMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a-~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
..+.+++|+=||+||||+.+. +.|+ .|+|+|=||...+.|++|.+.|+...+..+
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i 249 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRI 249 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHh
Confidence 466999999999999999554 5675 699999999999999999999977444333
No 155
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.87 E-value=0.022 Score=44.69 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=37.9
Q ss_pred EEEECCCCchHHHHHHHc---C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 137 VVDVGANVGMASFAAAVM---G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 137 vvDIGAn~G~~sl~~a~~---g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
|+|+|||.|.++..+++. | .+++++|.++++.+..+++....+. +++++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~ 56 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQA 56 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEES
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEEC
Confidence 699999999999988864 4 8999999999999999988765433 4555433
No 156
>PRK06922 hypothetical protein; Provisional
Probab=95.85 E-value=0.04 Score=57.66 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=40.1
Q ss_pred CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhc
Q 020824 132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFN 178 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN 178 (321)
.++++++|||||.|..+..+++ ++.+|+++|.++.+++..+++...+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~ 465 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE 465 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence 3678999999999999887775 5789999999999999998876544
No 157
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=95.82 E-value=0.011 Score=55.05 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=41.6
Q ss_pred CCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 134 NGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
|..|+|||||-|..|..+|+.|+.|.++|+.+.+++..++....+..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~ 136 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPV 136 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCch
Confidence 36699999999999999999999999999999999998877555544
No 158
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.77 E-value=0.028 Score=53.56 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCEEEEECCCCc-hHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEEE
Q 020824 134 NGLVVDVGANVG-MASFAAAV-MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYEA 189 (321)
Q Consensus 134 ~~~vvDIGAn~G-~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~~ 189 (321)
.-+.+|||.|.. .|.++.++ .||+++|-|-++..++..++|++.| +++++|++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence 468999999876 57888877 6999999999999999999999999 99899999765
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.041 Score=51.10 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=81.0
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecC
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVG 205 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~ 205 (321)
..-.++.+|+|.|.|.|..|.++++ .| ++|+.||-..+.++..++|+..-++.++++... |
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-------~--------- 153 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-------G--------- 153 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe-------c---------
Confidence 3446899999999999999999997 33 899999999999999999988655544333322 0
Q ss_pred CCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEccc
Q 020824 206 RLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEH 285 (321)
Q Consensus 206 ~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~ 285 (321)
+.. +.+.. ..+|.+-+|+. .-+++|..+.+.|... -.++-+.|.
T Consensus 154 Dv~----------------------------~~~~~--~~vDav~LDmp-~PW~~le~~~~~Lkpg-----g~~~~y~P~ 197 (256)
T COG2519 154 DVR----------------------------EGIDE--EDVDAVFLDLP-DPWNVLEHVSDALKPG-----GVVVVYSPT 197 (256)
T ss_pred ccc----------------------------ccccc--cccCEEEEcCC-ChHHHHHHHHHHhCCC-----cEEEEEcCC
Confidence 000 00000 13455555554 3467888888887664 334444443
Q ss_pred chhhcCCCHHHHHHHHHcCCCeE
Q 020824 286 LLQASNSSAKEIREFLHSVGYHH 308 (321)
Q Consensus 286 ~~~~~~~~~~ei~~~L~~~GY~~ 308 (321)
. ...+.+..-|++.||.-
T Consensus 198 v-----eQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 198 V-----EQVEKTVEALRERGFVD 215 (256)
T ss_pred H-----HHHHHHHHHHHhcCccc
Confidence 2 23566777788888863
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.70 E-value=0.09 Score=49.98 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=39.4
Q ss_pred CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~l 177 (321)
+++..+||+|||.|..+..+++. +.+|+++|-++++.+..++++..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 45689999999999999988763 68999999999999888877653
No 161
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.68 E-value=0.028 Score=49.39 Aligned_cols=43 Identities=26% Similarity=0.146 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChH
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFE 166 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~ 166 (321)
+...+....++..++|+|||.|.++..+++. .++|+++|++|.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 3333434457899999999999999888752 368999999985
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.67 E-value=0.036 Score=50.47 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
.|...+....+++++..+ ...++..+++.|||.|....++|..|++|+++|-++..++.+.
T Consensus 16 ~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH
Confidence 455555556667777763 3356789999999999999999999999999999999999974
No 163
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.029 Score=48.09 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
|++...+...++.-...=+|..+.|+||+.|..+..++..+ ..|++||-+|+..+...+|.+.-.+ ++.++++-+-+
T Consensus 30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdild 107 (185)
T KOG3420|consen 30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILD 107 (185)
T ss_pred HHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccc
Confidence 45555565666666543478999999999999997777765 5799999999999999988764333 45666665544
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=95.43 E-value=0.1 Score=49.80 Aligned_cols=63 Identities=13% Similarity=-0.047 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCEEEEECCCCc-hHHHHHHH---cCCEEEEECCChHHHHHHHHhhhh-cCCCCceEE
Q 020824 123 EILEKMKKEGKNGLVVDVGANVG-MASFAAAV---MGFRVLSFEPVFENLQRICDGVWF-NRVGDLVTV 186 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G-~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~l-N~~~~~v~~ 186 (321)
++|..+... +...|+|||||.| +.++.+++ ++++++.||-+|+..+.-++++.. .++.+++++
T Consensus 114 ~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F 181 (296)
T PLN03075 114 DLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFF 181 (296)
T ss_pred HHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEE
Confidence 344444433 5689999999965 44555553 468999999999999999888743 444444444
No 165
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.38 E-value=0.069 Score=51.90 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~ 175 (321)
.++..|+|||||.|..+..+++ .+.+|+++|+++...+..+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh
Confidence 3568999999999999988876 3579999999999999887764
No 166
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.37 E-value=0.06 Score=48.08 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhh
Q 020824 133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~ 175 (321)
+...|+|||||.|.++..+++. ..+++++|+++...+..++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc
Confidence 3478999999999999988874 468999999999988877653
No 167
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.36 E-value=0.13 Score=47.11 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
.|...+....+.+.+..+. .+++..|++.|||-|....++|..|++|+++|-++..++.+.+
T Consensus 22 ~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 22 GFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence 4555555555555555543 2356899999999999999999999999999999999998854
No 168
>PRK03612 spermidine synthase; Provisional
Probab=95.35 E-value=0.27 Score=50.48 Aligned_cols=45 Identities=11% Similarity=-0.065 Sum_probs=38.6
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
++...|+|||+|.|..+..+++. + .+|+++|.||+..+..+++..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~ 342 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCc
Confidence 45678999999999999888874 4 699999999999999987543
No 169
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.30 E-value=0.078 Score=48.55 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
++..+++.-....++|||...|+-.+..|. .+++|+++|-|+.+++.-.+-++..+...+|++.+
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 333333333458999999999999988886 37999999999999999988888777665555543
No 170
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.26 E-value=0.054 Score=52.57 Aligned_cols=96 Identities=19% Similarity=0.102 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcc
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSA 211 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~ 211 (321)
.++.+++|+||.-|-||..+.+.|++|+|||..| ..+.|.. + ++|+ .....
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~----~---~~V~--------------h~~~d------- 260 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMD----T---GQVE--------------HLRAD------- 260 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhC----C---CCEE--------------EEecc-------
Confidence 4789999999999999999999999999999554 2222211 1 2222 22210
Q ss_pred ccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEE
Q 020824 212 VSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEE 282 (321)
Q Consensus 212 l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~ 282 (321)
+ ..+ .+ . .+.+|++-+|+-=.=..+.+=+.++|.+..+ ...++-.
T Consensus 261 ----~--fr~---------~p-----~----~~~vDwvVcDmve~P~rva~lm~~Wl~~g~c--r~aIfnL 305 (357)
T PRK11760 261 ----G--FKF---------RP-----P----RKNVDWLVCDMVEKPARVAELMAQWLVNGWC--REAIFNL 305 (357)
T ss_pred ----C--ccc---------CC-----C----CCCCCEEEEecccCHHHHHHHHHHHHhcCcc--cEEEEEE
Confidence 0 000 00 0 2478999999998888999999999887654 3444444
No 171
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.19 E-value=0.067 Score=48.28 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCC-EEEEECCChHHHHHHHHh
Q 020824 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGF-RVLSFEPVFENLQRICDG 174 (321)
Q Consensus 120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~n 174 (321)
.+..+++. ++.+++++|+|+|+|+|...+.+|. .++ +++++|-.|..++.-+..
T Consensus 30 ~~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 30 FVSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp HHHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence 35566654 4456899999999999999888875 575 599999999877665543
No 172
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.04 E-value=0.079 Score=48.82 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=92.0
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE--EEEeEecCcceEEEEeecCC
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV--YEAAVSDRIGNITFHKLVGR 206 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~--~~~Alsd~~g~~~~~~~~~~ 206 (321)
+..++.+|+|.-.|.|++++.+++.|+ +|+.||-||...+.-. +|.+..+..- +..-+||....+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~----lNPwSr~l~~~~i~iilGD~~e~V-------- 198 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK----LNPWSRELFEIAIKIILGDAYEVV-------- 198 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec----cCCCCccccccccEEecccHHHHH--------
Confidence 334789999999999999999999998 9999999998777643 5666421111 111111111100
Q ss_pred CCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccc
Q 020824 207 LDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHL 286 (321)
Q Consensus 207 ~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~ 286 (321)
. .++--++|.++.+ +|.|=+- .|=+-.+.-+-..+.|++. -....+--.|..
T Consensus 199 ------~----------------~~~D~sfDaIiHD--PPRfS~A-geLYseefY~El~RiLkrg---GrlFHYvG~Pg~ 250 (287)
T COG2521 199 ------K----------------DFDDESFDAIIHD--PPRFSLA-GELYSEEFYRELYRILKRG---GRLFHYVGNPGK 250 (287)
T ss_pred ------h----------------cCCccccceEeeC--CCccchh-hhHhHHHHHHHHHHHcCcC---CcEEEEeCCCCc
Confidence 0 0111135666643 3444333 2666666677777777765 345666666666
Q ss_pred hhhcCCCHHHHHHHHHcCCCeEEEEeC
Q 020824 287 LQASNSSAKEIREFLHSVGYHHCNQHG 313 (321)
Q Consensus 287 ~~~~~~~~~ei~~~L~~~GY~~~~~~G 313 (321)
.+++......+.+.|++.||+......
T Consensus 251 ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 251 RYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ccccCChhHHHHHHHHhcCceeeeeeh
Confidence 666666788999999999999765443
No 173
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.99 E-value=0.074 Score=47.50 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=38.7
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
++..++ .++..|+|+|||.|..-.++.+ ++.+++++|-+++.+....+
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~ 54 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA 54 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence 344455 4679999999999998777765 78999999999998777653
No 174
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.78 E-value=0.0055 Score=47.73 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=33.0
Q ss_pred EEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824 138 VDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 138 vDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
+|||||.|..+..+... +.+++++|++|.+++..++.+....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 69999999998888764 7899999999999977666655443
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.74 E-value=0.23 Score=47.15 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
+.++.... ++..|+|+=|+.|.+|+.+++.|+ +|+++|.+....+..++|+++|++.
T Consensus 115 R~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 115 RKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp HHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 44555554 568999999999999999998885 7999999999999999999999874
No 176
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.47 E-value=0.16 Score=50.35 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
..+.... +|..|+|+=|+.|.+|+.+|.-|+ +|+++|.+....++.++|+++|++.
T Consensus 210 ~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~ 266 (393)
T COG1092 210 RALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266 (393)
T ss_pred HHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC
Confidence 3444444 479999999999999999999998 9999999999999999999999984
No 177
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.43 E-value=0.066 Score=49.56 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=39.1
Q ss_pred CCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
....++|||||.|..|+.+|+ -| -.|+++|-+|..++..++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 457899999999999999998 46 479999999999999998865
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.41 E-value=0.18 Score=46.31 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=41.8
Q ss_pred CCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 134 NGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
..+++|||+|-|.+.+.+|+ +...++++|.-...+..+.+.+...++ +|+.++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~ 103 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLL 103 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEE
Confidence 46999999999999999997 568999999998877777766665554 244443
No 179
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.29 E-value=0.13 Score=46.33 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=42.6
Q ss_pred EEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 137 VVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 137 vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
+.||||-.|+..+++.+.| -+|+|.|-++.-++..+++++.+++.+++++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~ 52 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEV 52 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEE
Confidence 6899999999999999977 4899999999999999999998887665554
No 180
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.077 Score=53.70 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
+.+-.++...+..+.+.+++|+=||.|.+++..|+.-.+|+++|-+|+.++-.+.|...|++. |.++
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~F 435 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATF 435 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceee
Confidence 344566777777788899999999999999999997789999999999999999999999874 4444
No 181
>PHA03412 putative methyltransferase; Provisional
Probab=94.25 E-value=0.064 Score=49.54 Aligned_cols=43 Identities=28% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCEEEEECCCCchHHHHHHHc-----CCEEEEECCChHHHHHHHHhh
Q 020824 133 KNGLVVDVGANVGMASFAAAVM-----GFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~-----g~~ViafEP~p~~~~~L~~n~ 175 (321)
.+..|+|+|||.|..++.+++. ..+|+++|-++..++..++|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 4689999999999999988762 368999999999999998774
No 182
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=94.13 E-value=0.12 Score=46.49 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
+.++...+..+.-..++|+||++|.+|..++....++.++|-++..++..++.++ +. ++|++....+.+
T Consensus 32 ~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~-~~V~~~~~dvp~ 100 (201)
T PF05401_consen 32 RATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GL-PHVEWIQADVPE 100 (201)
T ss_dssp HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T--SSEEEEES-TTT
T ss_pred HHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CC-CCeEEEECcCCC
Confidence 3445433444566889999999999999999887899999999999999987765 33 578777776644
No 183
>PRK10742 putative methyltransferase; Provisional
Probab=94.08 E-value=0.24 Score=46.01 Aligned_cols=50 Identities=26% Similarity=0.153 Sum_probs=43.7
Q ss_pred HhcCCCCC--EEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824 128 MKKEGKNG--LVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 128 ~~~~~~~~--~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l 177 (321)
.+...++. +|+|.=||.|..++.++..|++|+++|-+|..+..+++|++.
T Consensus 81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred HhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 33333445 999999999999999999999999999999999999999875
No 184
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.95 E-value=0.084 Score=45.92 Aligned_cols=35 Identities=31% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChH
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFE 166 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~ 166 (321)
+++.+++|+||.-|-||-.+.+.+ ++|+|+|..|.
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 366999999999999999999865 89999999987
No 185
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.87 E-value=2.3 Score=38.91 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=43.7
Q ss_pred CEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 135 GLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
..+.|||+-.++...++-+.+ -.++|.|-++.-++.-.+|+..|++.+++++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~v 71 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDV 71 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEE
Confidence 449999999999999888744 6899999999999999999998877554443
No 186
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.75 E-value=0.14 Score=51.17 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 134 NGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...++|||+|.|..|+.+++.| -.|+|.|----+.+..++-...|++.++|.++|-
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 3578999999999999999876 4799999877788888888888999999998764
No 187
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=93.72 E-value=0.6 Score=41.66 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhc---CCC-CCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 117 ISVTIQEILEKMKK---EGK-NGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 117 ~~~~~~~~L~~~~~---~~~-~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
.++.+..+|..... -.+ -+.|+|+|+|.|..-.-+++.| .+..++|-++..+++.+...+.++..+.|++-..-
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence 34444444444433 123 3499999999999988888866 56899999999988854444456665546665554
Q ss_pred Eec
Q 020824 191 VSD 193 (321)
Q Consensus 191 lsd 193 (321)
+-+
T Consensus 127 I~~ 129 (227)
T KOG1271|consen 127 ITD 129 (227)
T ss_pred ccC
Confidence 433
No 188
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.68 E-value=0.15 Score=45.78 Aligned_cols=68 Identities=22% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEe
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHK 202 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~ 202 (321)
.+.+|+|.||+.|..++.+++.|+ .|++-|-+|...+.+.-|.+.|+. .+.+.+.=+...++...+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIGSPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccCCCcceeEEE
Confidence 789999999999999999999884 799999999999999999999985 35554443333555555554
No 189
>PRK00811 spermidine synthase; Provisional
Probab=93.39 E-value=0.32 Score=45.90 Aligned_cols=45 Identities=9% Similarity=-0.136 Sum_probs=39.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
++...|+|||+|.|..+..+.+. + .+|.++|.+|...+..++.+.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~ 121 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLP 121 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhH
Confidence 45678999999999999988874 4 689999999999999988764
No 190
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.84 Score=40.67 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=50.7
Q ss_pred HHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 121 IQEILEKMKKE--GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 121 ~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
+.+-|-+++.+ -++..|+|+=||.|...+.+...| .+++.+|-+...++.|++|++.=+...++++
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~ 97 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV 97 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence 33334444433 478999999999999999999888 5899999999999999999875443333333
No 191
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.11 E-value=0.29 Score=48.06 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHH
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQ 169 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~ 169 (321)
-+++..+.+...-+.+||||||.|+.|-.++- .|..|+|+|-+-...+
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVE 190 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHH
Confidence 35566666666779999999999999988875 7899999999955433
No 192
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=93.08 E-value=0.28 Score=45.82 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=46.4
Q ss_pred hcCCCCCCchhHHH-HHHHHHHhcC---CCCCEEEEECCCCchH--HHH--HHHc-------CCEEEEECCChHHHHHHH
Q 020824 108 KGKPFRKPDISVTI-QEILEKMKKE---GKNGLVVDVGANVGMA--SFA--AAVM-------GFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 108 ~~~~~~~p~~~~~~-~~~L~~~~~~---~~~~~vvDIGAn~G~~--sl~--~a~~-------g~~ViafEP~p~~~~~L~ 172 (321)
.+..||+|...+.+ +.++..+.+. +++..|+|+||+.|.- |+. +++. +.+|+|+|.++.+++..+
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 56677777655544 3445544422 3457999999999984 333 3321 368999999999999988
Q ss_pred Hhh
Q 020824 173 DGV 175 (321)
Q Consensus 173 ~n~ 175 (321)
+.+
T Consensus 150 ~~~ 152 (264)
T smart00138 150 AGI 152 (264)
T ss_pred cCC
Confidence 754
No 193
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.90 E-value=0.27 Score=45.98 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=36.4
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
....++|||||.|..|..++..=.+|+|=|.++.+..+|++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh
Confidence 45789999999999999998766789999999999888875
No 194
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.85 E-value=0.29 Score=44.58 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred CCEEEEECCCCchHHHHHH--HcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 134 NGLVVDVGANVGMASFAAA--VMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a--~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+..++|||+|.|.-++.+| .++.+|+.+|++..-...|+.-...=++ +|+++++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~ 124 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHG 124 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehh
Confidence 5899999999999998877 3678899999999988888776554444 46776654
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.28 Score=44.55 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=50.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc----CCEEEEECCChHHHHHHHHhhh
Q 020824 112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM----GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~----g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+..|.+-.+.-++|...++ +|-.++|||.|.|+.|..++++ |..++++|-.|+.++.-++|+.
T Consensus 63 iSAp~mha~~le~L~~~L~--pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~ 129 (237)
T KOG1661|consen 63 ISAPHMHATALEYLDDHLQ--PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD 129 (237)
T ss_pred EcchHHHHHHHHHHHHhhc--cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH
Confidence 3456665556666776664 6799999999999999999862 3456999999999999999876
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=92.69 E-value=0.58 Score=47.45 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=47.7
Q ss_pred cCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
...++..|+|++|.-|.=|..++. ++ +.|+|+|.++.-++.|++|++.-++ .++.+.+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~ 170 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTH 170 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 446889999999999998887775 43 7999999999999999999987666 4555544
No 197
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.32 E-value=0.3 Score=45.09 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCCh
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVF 165 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p 165 (321)
...++.+-=..++.+++||||..|-||-.+.+.|+ +|+|+|=--
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~ 112 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY 112 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence 34444443234889999999999999999999985 799999654
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=92.25 E-value=0.51 Score=41.84 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred EEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 136 LVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
.++|||+|-|.-.+.+|- +..+++.+|++..-...|+.-+..=++ +|+++++.=+-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc
Confidence 899999999998887764 678999999999988888877765565 468887765554
No 199
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=92.20 E-value=0.34 Score=44.26 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHh
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n 174 (321)
+++..+ ....-..++|+|||-|.-|-++++ +++.|.+||-+|++++..++.
T Consensus 21 dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r 73 (257)
T COG4106 21 DLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR 73 (257)
T ss_pred HHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh
Confidence 344433 224568899999999999888876 689999999999999987643
No 200
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=92.15 E-value=0.27 Score=45.47 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHhcCCCC-CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824 124 ILEKMKKEGKN-GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 124 ~L~~~~~~~~~-~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n 174 (321)
++..+....++ ...+|||||.|..+..++..-.+|+|.|+++..++.+++.
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence 34444333233 3999999999977777777667899999999999987653
No 201
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=91.95 E-value=0.26 Score=44.90 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEe
Q 020824 133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVS 192 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Als 192 (321)
.....+|+|||+|-.|-.+.. .--+|-.+||++...+..++.+.-+. ..-..++++++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ 114 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQ 114 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHh
Confidence 468999999999999986654 44689999999999999987654311 123444555553
No 202
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=91.94 E-value=0.52 Score=42.88 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=34.9
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHH
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~ 173 (321)
......+...++|||+|.|.++..+++ ++.+++.+|- |..++..++
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~ 141 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE 141 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence 344445668999999999999998876 6799999997 777766655
No 203
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=91.94 E-value=0.43 Score=43.38 Aligned_cols=51 Identities=16% Similarity=-0.033 Sum_probs=39.7
Q ss_pred CCEEEEECCCCchHHHHH-HHcCCEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824 134 NGLVVDVGANVGMASFAA-AVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVT 185 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~-a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~ 185 (321)
..-+++||||.|..=-+. -.++.+|.++||+|.+.+.+.+..+.|.. .++.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~ 128 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVE 128 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceE
Confidence 355799999999854433 34789999999999999999998887754 3444
No 204
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.49 E-value=0.51 Score=48.28 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
.+.+++|||||.|.+.+.+|+ +...++++|.....+..+.+.....++ .|+.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~ 403 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFP 403 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEc
Confidence 578999999999999999987 568999999998877777766665555 4666543
No 205
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.40 E-value=1.6 Score=38.89 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=44.0
Q ss_pred CCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 134 NGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
...+++||||.|..|.++++ . +...+|.|-||...+.-.+....|+. ++.++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~t 100 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRT 100 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeeh
Confidence 57899999999999988886 2 47799999999999998888888875 3444444
No 206
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.12 E-value=0.25 Score=45.23 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCc
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRI 195 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~ 195 (321)
...++||.=+|.|-.+..++..+..|+++|-+|.-+...++|.+..|+.++|++.+.-+-|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 457899999999999999999999999999999999999999999999888888877654433
No 207
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.84 E-value=1.7 Score=41.70 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
+.|.+ +++++..+. ..+++++||+=+|-|-+|..+++ . +++|++||-+|..++..++.++- ...++++++.-
T Consensus 4 H~pVl---l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~n 77 (305)
T TIGR00006 4 HQSVL---LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDN 77 (305)
T ss_pred Ccchh---HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCC
Confidence 34555 344555443 34778999999999999999986 3 48999999999999888776542 23456666553
No 208
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.75 E-value=0.24 Score=40.20 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChH
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFE 166 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~ 166 (321)
+..-|+|||||.|.....+.+-|.+.++||.-.+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 4567999999999999999999999999998643
No 209
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.34 E-value=0.47 Score=48.12 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF 165 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p 165 (321)
|-+.+++++......+.-.+++|||||+|.|..++...+..+++|-|+-
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d 149 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPND 149 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEccccc
Confidence 3333455554433445667899999999999999999999999999863
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=90.20 E-value=1.6 Score=41.17 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=53.6
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV 191 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al 191 (321)
..++-.+|++|++-|.|-|..|..+++ . -++++.||-...-++...+-....++.+++++.+--|
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 344456899999999999999999998 3 3899999999888888877777778888888876654
No 211
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.66 E-value=0.69 Score=41.80 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCCh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVF 165 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p 165 (321)
.++.+|||+||--|.||-.+++. + .+|+++|-+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 47899999999999999999973 3 5699998765
No 212
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=89.18 E-value=0.56 Score=43.22 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+...+|+|+=||.|.-++.+|..|++|+++|-+|..+..++..++
T Consensus 74 ~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~ 118 (234)
T PF04445_consen 74 GMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLK 118 (234)
T ss_dssp TB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHH
T ss_pred CCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHH
Confidence 344699999999999999999899999999999999999987655
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=88.65 E-value=1 Score=42.53 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---------cCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---------MGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---------~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
|.|.-|.. +.+++..++...++.+|+|-.||.|.+-+.+.+ ...+++++|.++..+...+.|+.+++.
T Consensus 26 G~~~TP~~---i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 26 GQFYTPRE---IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp GGC---HH---HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred ceeehHHH---HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 45555643 555666666666778999999999998776654 357899999999999998888877654
No 214
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.58 E-value=3.5 Score=38.91 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=50.4
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
....+...++..|+|..|.-|.=|..++. ++ ++|+|+|.++.-+..|.+|+..-+. .++.+..
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~ 142 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVIN 142 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEE
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 34445667899999999999998888876 43 8999999999999999999887665 4555554
No 215
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=88.57 E-value=2.5 Score=36.99 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCE---------EEEECCChHHHHHHHHhhhhcCCCC
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFR---------VLSFEPVFENLQRICDGVWFNRVGD 182 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~---------ViafEP~p~~~~~L~~n~~lN~~~~ 182 (321)
+.+.+...+-.+....++++++|-=||.|...+.++.. +.. ++++|-++..++..++|+...++..
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 44455566666666678899999999999999988764 333 8899999999999999988666543
No 216
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=88.45 E-value=1.5 Score=39.57 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
|-++|.+.+.. .+..|++||+|.|.+..+||+ +..+-.-=|+++.....+++.+...++
T Consensus 14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~ 74 (204)
T PF06080_consen 14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL 74 (204)
T ss_pred HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence 45667777643 223599999999999999987 456777778899888888877765544
No 217
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=87.86 E-value=0.93 Score=42.02 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEEECCCCchHHHHHHH--c--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824 136 LVVDVGANVGMASFAAAV--M--GFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~--~--g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
++++||||.|.....+.+ . +-+|+|.|=+|..++.++++...+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE 121 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence 899999999999888876 3 3799999999999999998866553
No 218
>PLN02366 spermidine synthase
Probab=87.83 E-value=2.6 Score=40.43 Aligned_cols=45 Identities=13% Similarity=-0.188 Sum_probs=38.3
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
++...|++||+|.|.....+++. + .+|..+|.++...+..++.+.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence 45688999999999998888874 4 689999999999998887653
No 219
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=87.76 E-value=1.2 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
....++|||||.|..+-.+...|...+.+|-+|.+.+.-.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 47999999999999999888889999999999999887764
No 220
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=87.50 E-value=1.6 Score=40.71 Aligned_cols=45 Identities=7% Similarity=-0.193 Sum_probs=37.3
Q ss_pred CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+....|++||+|.|..+..+.+. ..+|.++|.++...+..++++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~ 117 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLP 117 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhH
Confidence 34469999999999988877764 3689999999999998887653
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.43 E-value=7.9 Score=41.28 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHc------C----------------------------------
Q 020824 117 ISVTIQEILEKMKKE-GKNGLVVDVGANVGMASFAAAVM------G---------------------------------- 155 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~-~~~~~vvDIGAn~G~~sl~~a~~------g---------------------------------- 155 (321)
+.+.+...+-.+..- .++..++|-+||.|++.+.+|.+ |
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 334443333333332 35789999999999998777541 1
Q ss_pred ----CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824 156 ----FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV 191 (321)
Q Consensus 156 ----~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al 191 (321)
.+++++|-++..++..++|+..+++.+.+++.+.-+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~ 292 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV 292 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh
Confidence 269999999999999999999999877777766543
No 222
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.27 E-value=7.1 Score=36.57 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=77.0
Q ss_pred EEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCccccc
Q 020824 136 LVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSA 214 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~ 214 (321)
.++|+-||.|..++-+.+.|++ |+++|-++...+.++.|....-....++ +....+..+.+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~--~~~~~~~~~~~D~l~------------ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDIT--KIDEKDFIPDIDLLT------------ 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccc--cCchhhcCCCCCEEE------------
Confidence 5899999999999999888875 7889999999999988753100000000 000000001111111
Q ss_pred cCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhc-CCC
Q 020824 215 TGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQAS-NSS 293 (321)
Q Consensus 215 ~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~-~~~ 293 (321)
...||-.....=.. -+.++..-..+....++++..+ .+++++|--+...... ...
T Consensus 68 --------------~gpPCq~fS~ag~~--------~~~~d~r~~L~~~~~~~i~~~~--P~~~v~ENV~g~~~~~~~~~ 123 (275)
T cd00315 68 --------------GGFPCQPFSIAGKR--------KGFEDTRGTLFFEIIRILKEKK--PKYFLLENVKGLLTHDNGNT 123 (275)
T ss_pred --------------eCCCChhhhHHhhc--------CCCCCchHHHHHHHHHHHHhcC--CCEEEEEcCcchhccCchHH
Confidence 00111111111000 0112223345666667777764 3478888877655421 245
Q ss_pred HHHHHHHHHcCCCeEEE
Q 020824 294 AKEIREFLHSVGYHHCN 310 (321)
Q Consensus 294 ~~ei~~~L~~~GY~~~~ 310 (321)
+.++.+.|++.||.+..
T Consensus 124 ~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 124 LKVILNTLEELGYNVYW 140 (275)
T ss_pred HHHHHHHHHhCCcEEEE
Confidence 78999999999999743
No 223
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=86.57 E-value=1.9 Score=40.44 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=39.4
Q ss_pred CchhHHHHHHHHHHhcCC---CCCEEEEECCCCchHHHHHHH--cC-CEEEEECCChHHHHHHHHh
Q 020824 115 PDISVTIQEILEKMKKEG---KNGLVVDVGANVGMASFAAAV--MG-FRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~---~~~~vvDIGAn~G~~sl~~a~--~g-~~ViafEP~p~~~~~L~~n 174 (321)
|..-..+.++|..+.+.. ...+|+|+|||.|.....+.. .. .+++++|+++.+.+.-+..
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l 77 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRL 77 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHH
Confidence 333344556666654321 346899999999985544443 22 5799999999988765543
No 224
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=86.03 E-value=18 Score=32.96 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEE
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITF 200 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~ 200 (321)
++.++..+.+.++.-+|-|.|||.+..+... ..+.+|++||-... | +.|+..++|
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n---~~Vtacdia---------- 114 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N---PRVTACDIA---------- 114 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S---TTEEES-TT----------
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C---CCEEEecCc----------
Confidence 4456666666667789999999998776322 13568999986553 2 233332211
Q ss_pred EeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEE
Q 020824 201 HKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIY 280 (321)
Q Consensus 201 ~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~Iii 280 (321)
.++. .. ..+.|-+..|. ++.. .-.+.|+-+.+.|+.. .-..+.
T Consensus 115 ----------~vPL--------~~--~svDv~VfcLS-LMGT-------------n~~~fi~EA~RvLK~~---G~L~IA 157 (219)
T PF05148_consen 115 ----------NVPL--------ED--ESVDVAVFCLS-LMGT-------------NWPDFIREANRVLKPG---GILKIA 157 (219)
T ss_dssp ----------S-S----------T--T-EEEEEEES----SS--------------HHHHHHHHHHHEEEE---EEEEEE
T ss_pred ----------cCcC--------CC--CceeEEEEEhh-hhCC-------------CcHHHHHHHHheeccC---cEEEEE
Confidence 0000 00 11334444443 2211 1134566777777654 235789
Q ss_pred EEcccchhhcCCCHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824 281 EEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCT 319 (321)
Q Consensus 281 E~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~~ 319 (321)
|+..+. .+..+..+.+.+.||.+...+-++.|++
T Consensus 158 EV~SRf-----~~~~~F~~~~~~~GF~~~~~d~~n~~F~ 191 (219)
T PF05148_consen 158 EVKSRF-----ENVKQFIKALKKLGFKLKSKDESNKHFV 191 (219)
T ss_dssp EEGGG------S-HHHHHHHHHCTTEEEEEEE--STTEE
T ss_pred EecccC-----cCHHHHHHHHHHCCCeEEecccCCCeEE
Confidence 998875 4678889999999999998888777765
No 225
>PRK11524 putative methyltransferase; Provisional
Probab=86.02 E-value=3.1 Score=39.16 Aligned_cols=54 Identities=15% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+++++.... .+|++|+|-=||.|...+.+.+.|-+.++||-+++.++..++.+.
T Consensus 198 ~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 198 LKRIILASS--NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 445555443 478999999999999999999999999999999999988876654
No 226
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.43 E-value=3.3 Score=36.30 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
.+.+++++.... .++++|+|-=||.|.....+.+.|-+.++||-++..++...
T Consensus 178 ~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 178 VELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 444566666554 47899999999999999999999999999999999887754
No 227
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=84.81 E-value=3.4 Score=39.74 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
+.|.+- ++++..+. ..+++++||+=-|.|-+|..+.+ .++++++||=+|..++..++++... .+++++++.-
T Consensus 4 H~PVll---~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~ 77 (310)
T PF01795_consen 4 HIPVLL---KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGN 77 (310)
T ss_dssp ---TTH---HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-
T ss_pred eecccH---HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEecc
Confidence 456663 34555444 35789999999999999998886 4699999999999999988776532 4678887765
Q ss_pred Eec
Q 020824 191 VSD 193 (321)
Q Consensus 191 lsd 193 (321)
.++
T Consensus 78 F~~ 80 (310)
T PF01795_consen 78 FSN 80 (310)
T ss_dssp GGG
T ss_pred HHH
Confidence 433
No 228
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=84.65 E-value=6 Score=38.64 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
+...++.+.+|.+|+|.-|.-|.=|..+++ + |..|+|+|.++.=.+.|++|+..-+.. ++.+.+
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~ 214 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVN 214 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEe
Confidence 444567778999999999999997777765 3 466899999999999999998866653 344444
No 229
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.28 E-value=0.63 Score=36.57 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=5.9
Q ss_pred EEECCCCchHHHHHHH---cC--CEEEEECCChH
Q 020824 138 VDVGANVGMASFAAAV---MG--FRVLSFEPVFE 166 (321)
Q Consensus 138 vDIGAn~G~~sl~~a~---~g--~~ViafEP~p~ 166 (321)
|+||...|..+.++++ .+ .++++||+.+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 6899999999988875 23 48999999996
No 230
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=84.09 E-value=3.9 Score=36.05 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhh
Q 020824 127 KMKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~ 175 (321)
+.++...+--|++.|+|.|.+|-...+.| ..+.++|-+|+.+..|.+.+
T Consensus 42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC
Confidence 33444566789999999999999887755 67999999999999997754
No 231
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.10 E-value=2 Score=37.12 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=48.4
Q ss_pred CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTV 186 (321)
Q Consensus 115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~ 186 (321)
|...+.++.+|. ++...+.+..+|+|.|.|-.-+.+++.| ....++|-||-....-+-.....++.++..+
T Consensus 55 pAtteQv~nVLS-ll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf 126 (199)
T KOG4058|consen 55 PATTEQVENVLS-LLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRF 126 (199)
T ss_pred CccHHHHHHHHH-HccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhh
Confidence 445555677655 4444567899999999999999999988 6789999999765554332223344333333
No 232
>PLN02823 spermine synthase
Probab=82.99 E-value=4.9 Score=39.05 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=39.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhc
Q 020824 132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFN 178 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN 178 (321)
+....++-||+|.|.....+.+. + .+|.++|.+|..++..++.+..+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~ 150 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVN 150 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccc
Confidence 34568999999999998888773 3 68999999999999998876544
No 233
>PRK01581 speE spermidine synthase; Validated
Probab=81.73 E-value=3.3 Score=40.76 Aligned_cols=43 Identities=12% Similarity=-0.062 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHH
Q 020824 131 EGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 131 ~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~ 173 (321)
......|++||+|.|.....+.+.+ .+|+++|-+|+..+..++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence 3455799999999999877777643 799999999999998874
No 234
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=81.13 E-value=3.6 Score=39.87 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhh
Q 020824 133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~ 175 (321)
++..|+|+|||-|.-..-..+.+ ..++++|+....++..++.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH
Confidence 67999999999877554444444 78999999999999888766
No 235
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=81.00 E-value=2.5 Score=39.30 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=39.2
Q ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcC
Q 020824 122 QEILEKMKKE-GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 122 ~~~L~~~~~~-~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
++++..+... ++.++|+|||||.=-.++.... .+..++|+|-+...++.+..-+..-+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~ 153 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG 153 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence 3444444433 3579999999988777775543 36899999999999999987765444
No 236
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=80.61 E-value=14 Score=35.31 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+.+.++..+..+...+..-.|+||-||.|-|-+-+.. +. ..|...|=+|.+++.-++.++.+++++-+++.+.
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEec
Confidence 3444555556665556779999999999999887754 22 6899999999999999999999998653355443
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=79.73 E-value=6.4 Score=36.16 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
.+|++|+.||=|.|........ ...+-+-+||+|+.+++++++-.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw 145 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW 145 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc
Confidence 4789999999999998777765 45778889999999999997633
No 238
>PRK13699 putative methylase; Provisional
Probab=79.56 E-value=8.2 Score=35.22 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
++.++.... .+|++|+|-=||.|.....+.+.|-+.+++|-+|+.++...+.+.
T Consensus 153 ~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 153 LQPLIESFT--HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 345555444 478999999999999999988899999999999998888766554
No 239
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=77.88 E-value=7.1 Score=35.84 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHh
Q 020824 132 GKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n 174 (321)
.+|..|+.+||..|+.--..+. ..+.|+|+|-+|...+.|-..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~l 117 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNL 117 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHH
Confidence 4789999999999999888886 358999999999998888643
No 240
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=75.00 E-value=13 Score=36.53 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCchHHHHHHH------c----CCEEEEECCChHHHHHHHHhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAV------M----GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~------~----g~~ViafEP~p~~~~~L~~n~~ 176 (321)
..-.+++||||.|....-+.+ + ..+++.+||+|+..++=+++++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 456799999999997554432 1 4799999999998888777765
No 241
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.59 E-value=7.8 Score=35.63 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=31.8
Q ss_pred CCEEEEECCCCchHHHHHHH----c------CCEEEEECCChHHHHHHHHhhh
Q 020824 134 NGLVVDVGANVGMASFAAAV----M------GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~----~------g~~ViafEP~p~~~~~L~~n~~ 176 (321)
.-.++++|||.|....-+.+ . ..+++.+|++|...+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 37999999999998665543 1 2589999999999888777754
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=73.11 E-value=5.2 Score=35.94 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCchHHHHHHH---cCCEEEEEC
Q 020824 132 GKNGLVVDVGANVGMASFAAAV---MGFRVLSFE 162 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafE 162 (321)
.++++|+|+||--|.||-.+-+ +.+.|+++|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVD 101 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVD 101 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEe
Confidence 4789999999999999998876 335666655
No 243
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=70.79 E-value=46 Score=30.41 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCch--HHHHHH---H-cCCEEEEECCChHHHHHHHHhhh
Q 020824 106 LLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGM--ASFAAA---V-MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 106 ~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~--~sl~~a---~-~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+-.+..+.+|+..+ ++..+..--.-..+|++.++.|. .|+.++ + .|++++||-|+.+.....++.+.
T Consensus 18 vk~c~~~~ep~~aE----fISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~ 90 (218)
T PF07279_consen 18 VKMCKKFKEPGVAE----FISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALG 90 (218)
T ss_pred HHHhhhcCCCCHHH----HHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHh
Confidence 33456778898765 45555433355789999888654 344332 2 58999999999988666665543
No 244
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=69.96 E-value=22 Score=33.67 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824 259 HVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCT 319 (321)
Q Consensus 259 ~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~~ 319 (321)
+-++-+.+.|+-. --.-+.|+..++ .+.....+-|..+||..-..+-++-+++
T Consensus 245 df~kEa~RiLk~g---G~l~IAEv~SRf-----~dv~~f~r~l~~lGF~~~~~d~~n~~F~ 297 (325)
T KOG3045|consen 245 DFIKEANRILKPG---GLLYIAEVKSRF-----SDVKGFVRALTKLGFDVKHKDVSNKYFT 297 (325)
T ss_pred HHHHHHHHHhccC---ceEEEEehhhhc-----ccHHHHHHHHHHcCCeeeehhhhcceEE
Confidence 4456667766654 235677887765 4566788889999999877776666554
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=69.75 E-value=15 Score=33.22 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH----c--CCEEEEECCChHHHH
Q 020824 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV----M--GFRVLSFEPVFENLQ 169 (321)
Q Consensus 120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~--g~~ViafEP~p~~~~ 169 (321)
.+|+++.++. .+++|++|...|--.+++|. . .++|+++|.+.....
T Consensus 23 ~~qeli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~ 74 (206)
T PF04989_consen 23 AYQELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN 74 (206)
T ss_dssp HHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--
T ss_pred HHHHHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc
Confidence 4567777663 48999999999987777764 2 389999999765443
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.11 E-value=12 Score=34.01 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHhcC--CCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhh
Q 020824 122 QEILEKMKKE--GKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 122 ~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
..+|..+... .+++.|+-+||..|+..-..+. .| ++|+|+|=.|..+..|-....
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH
Confidence 3444444322 4889999999999999888887 45 899999999998888865443
No 247
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=66.79 E-value=34 Score=32.26 Aligned_cols=56 Identities=16% Similarity=0.019 Sum_probs=43.0
Q ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHc--------CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM--------GFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--------g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
+-..+.++++..++|+++|.|..++.+.+. +.+|...|-||.....-++.....++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l 155 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL 155 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC
Confidence 334455678899999999999999988651 27899999999998887766543344
No 248
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=64.11 E-value=23 Score=36.64 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCEEEEECCCCchH---HHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824 134 NGLVVDVGANVGMA---SFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV 191 (321)
Q Consensus 134 ~~~vvDIGAn~G~~---sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al 191 (321)
-.++.=+|||.|-. ++-++. .-.+++|+|-||..+-.|+. .....+.++|+++..-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDM 430 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccc
Confidence 35677899999984 555554 23689999999999999875 55556677888876543
No 249
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=64.03 E-value=20 Score=35.40 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCCEEEEECCCCchHHHHHHH--cC-CEEEEECCChHHHHHHHHhhhhcCCCC-ceEEEE
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MG-FRVLSFEPVFENLQRICDGVWFNRVGD-LVTVYE 188 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g-~~ViafEP~p~~~~~L~~n~~lN~~~~-~v~~~~ 188 (321)
+.-+++|.=|+.|.-++..++ .| .+|++=|-+|..++.+++|+++|++.. ++++.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~ 108 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSN 108 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEeh
Confidence 346899999999999998886 34 689999999999999999999999976 466655
No 250
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=63.22 E-value=45 Score=32.10 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
++.++.+. ..+++++||+=-|.|-+|-.+.. .+ ++++++|=+|..++.-++....++ .++++++.
T Consensus 13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~ 80 (314)
T COG0275 13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHG 80 (314)
T ss_pred HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeC
Confidence 44455443 34779999999999999988876 33 789999999999999888765443 56777665
No 251
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=62.67 E-value=16 Score=37.30 Aligned_cols=46 Identities=11% Similarity=-0.130 Sum_probs=37.3
Q ss_pred CCEEEEECCCCchHHHHHHH-c-------C--CEEEEECCChHHHHHHHHhhhhcC
Q 020824 134 NGLVVDVGANVGMASFAAAV-M-------G--FRVLSFEPVFENLQRICDGVWFNR 179 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~-------g--~~ViafEP~p~~~~~L~~n~~lN~ 179 (321)
...|+|.|||.|.+...++. . + ..++++|-++..++.++.|+...+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 46899999999999877764 1 1 468999999999999998876543
No 252
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=62.65 E-value=1.6 Score=39.74 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
...+++|+|||.|..|..++-.-..|+|-|.+-.+..+|++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 45799999999999999987544569999999988888875
No 253
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=61.53 E-value=11 Score=26.00 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCeEEEEeCCccceec
Q 020824 295 KEIREFLHSVGYHHCNQHGTDAHCTK 320 (321)
Q Consensus 295 ~ei~~~L~~~GY~~~~~~G~~~~~~~ 320 (321)
.|+...|..+||++....|++..+++
T Consensus 2 ~el~k~L~~~G~~~~r~~GSH~~~~~ 27 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQKGSHHIFRH 27 (56)
T ss_dssp HHHHHHHHHTT-EEEEEETTEEEEE-
T ss_pred hHHHHHHHHCCCEEecCCCCEEEEEe
Confidence 58999999999999888888877664
No 254
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=60.27 E-value=21 Score=27.13 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=27.7
Q ss_pred EEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHH
Q 020824 137 VVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRIC 172 (321)
Q Consensus 137 vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~ 172 (321)
++|+||+.|..+ .++.. + ..++++|+++.......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALAR 89 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHH
Confidence 999999999987 44432 2 48999999999888843
No 255
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=57.41 E-value=1.1e+02 Score=29.49 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=39.8
Q ss_pred CCCCEEEEECCCCchHHHHHHH------cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824 132 GKNGLVVDVGANVGMASFAAAV------MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY 187 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~------~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~ 187 (321)
+++.++||.|||.|.-+..+.. ...+.+++|-+....+...+++..... +.+++.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~ 135 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCA 135 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEE
Confidence 5677999999999996554432 247899999999988888877763232 445554
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=57.40 E-value=45 Score=31.45 Aligned_cols=56 Identities=14% Similarity=0.034 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCCEEEEECCCCch--HHHHHHH---cCCEEEEECCChHHHHHHHHhhhhc
Q 020824 123 EILEKMKKEGKNGLVVDVGANVGM--ASFAAAV---MGFRVLSFEPVFENLQRICDGVWFN 178 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~G~--~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN 178 (321)
+..+.+.....-..|+|||+|+-. ++=..|+ ++++|+-+|-+|.....-+..+.-|
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~ 118 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN 118 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC
Confidence 334444543245789999999876 2222332 6899999999999888777666544
No 257
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=55.46 E-value=59 Score=31.83 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=59.2
Q ss_pred cCCCCCCc-hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824 109 GKPFRKPD-ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180 (321)
Q Consensus 109 ~~~~~~p~-~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~ 180 (321)
...|..|. +...+.+.+-++.+..+|..++|==||.|.+-+.+..+|+++++.|-+-...+-.+.|+...++
T Consensus 172 kRPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i 244 (347)
T COG1041 172 KRPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI 244 (347)
T ss_pred cCCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc
Confidence 33444453 4556677777887777889999999999999999999999999999999999999999876554
No 258
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=54.40 E-value=35 Score=22.05 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCC
Q 020824 24 FPCLLLFFIFYFNSHSYNPNPN 45 (321)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (321)
.+....+|+|=|+|+.+..+|+
T Consensus 12 V~ffv~LFifGflsnDp~RnP~ 33 (36)
T PF02532_consen 12 VIFFVSLFIFGFLSNDPGRNPG 33 (36)
T ss_dssp HHHHHHHHHHHHHTTCTTSSSS
T ss_pred HHHHHHHHhccccCCCCCCCCC
Confidence 4444555666678877776664
No 259
>PRK10458 DNA cytosine methylase; Provisional
Probab=49.46 E-value=1.1e+02 Score=31.15 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=37.2
Q ss_pred CCEEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhh
Q 020824 134 NGLVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGV 175 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~ 175 (321)
.-+++|+=||+|-.++-+-+.|++ |.++|-++...+.++.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 569999999999999999888875 688999999999988875
No 260
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=49.10 E-value=27 Score=33.95 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=40.8
Q ss_pred EEECCCCch-HHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 138 VDVGANVGM-ASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 138 vDIGAn~G~-~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
+|||-+.-. +.+.-++ -+|..++.|-+...++..+.|+..|++..++.++..
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~ 160 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV 160 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEe
Confidence 799865433 2333333 479999999999999999999999999888888776
No 261
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=48.54 E-value=44 Score=33.36 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHH
Q 020824 132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRI 171 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L 171 (321)
+.+.++|-.||+.+.++..++- .|-.|+.|||--.+|.--
T Consensus 92 ~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~ 133 (420)
T KOG0257|consen 92 PDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQ 133 (420)
T ss_pred CcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhH
Confidence 4678999999999999888876 578999999987776654
No 262
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=48.47 E-value=31 Score=33.67 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
.-.+.+|||+|+|..+-.....--+|-.+|++...+-..+.+++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~ 220 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA 220 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc
Confidence 35899999999999887776532347778888776666665553
No 263
>PTZ00357 methyltransferase; Provisional
Probab=47.16 E-value=84 Score=33.91 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.6
Q ss_pred CEEEEECCCCchH---HHHHHH-cC--CEEEEECCChHHHHHHHHh
Q 020824 135 GLVVDVGANVGMA---SFAAAV-MG--FRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 135 ~~vvDIGAn~G~~---sl~~a~-~g--~~ViafEP~p~~~~~L~~n 174 (321)
-+|+=+|||.|-. ++-+++ .| .+|+|+|=||.++..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr 747 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMR 747 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHH
Confidence 3688899999984 444444 34 6899999998866554443
No 264
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=45.56 E-value=51 Score=29.41 Aligned_cols=67 Identities=24% Similarity=0.381 Sum_probs=40.3
Q ss_pred cCCCCCCchhHHHH-HHHHHHhc---CCCCCEEEEECCCCch--HHHHHH--H-----cC--CEEEEECCChHHHHHHHH
Q 020824 109 GKPFRKPDISVTIQ-EILEKMKK---EGKNGLVVDVGANVGM--ASFAAA--V-----MG--FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 109 ~~~~~~p~~~~~~~-~~L~~~~~---~~~~~~vvDIGAn~G~--~sl~~a--~-----~g--~~ViafEP~p~~~~~L~~ 173 (321)
+..||+|...+.++ .++..+++ .++.-.|..+||..|. ||+.+. . .+ .+|+|-|-++...+..++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 34678887666554 34434442 2356889999999999 555553 2 12 589999999999988776
Q ss_pred hh
Q 020824 174 GV 175 (321)
Q Consensus 174 n~ 175 (321)
.+
T Consensus 83 G~ 84 (196)
T PF01739_consen 83 GI 84 (196)
T ss_dssp TE
T ss_pred CC
Confidence 53
No 265
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=45.45 E-value=34 Score=29.82 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=25.8
Q ss_pred EECCCC-ch-HHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 139 DVGANV-GM-ASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 139 DIGAn~-G~-~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
=||||. |. ....++..|.+|+.+|++++..+..++.+.
T Consensus 4 ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~ 43 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE 43 (180)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence 367752 21 455666779999999999998877766554
No 266
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=44.32 E-value=55 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.558 Sum_probs=13.4
Q ss_pred CCCCCChHHHHHHH--HHHHHHHHH
Q 020824 10 KHPKLTPKILLSLL--FPCLLLFFI 32 (321)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~ 32 (321)
....++|-+++.++ +++|.|+.+
T Consensus 18 ~~~~l~pn~lMtILivLVIIiLlIm 42 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIIILLIM 42 (85)
T ss_pred cccccChhHHHHHHHHHHHHHHHHH
Confidence 34557998887666 333333333
No 267
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=43.99 E-value=71 Score=29.40 Aligned_cols=46 Identities=11% Similarity=-0.162 Sum_probs=37.0
Q ss_pred CCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~l 177 (321)
++...|+=||.|.|.....+.+.. .+|.++|-+|...+..++-+..
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPE 122 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchh
Confidence 457899999999999988887743 7999999999999998876554
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.23 E-value=24 Score=32.80 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
++=..++|+|||.|...-.+..+-.+.-.||-+..+.+.-.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH 164 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH
Confidence 34578999999999988887766677888888887776654
No 269
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=42.34 E-value=92 Score=29.52 Aligned_cols=41 Identities=12% Similarity=-0.105 Sum_probs=36.2
Q ss_pred CEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhh
Q 020824 135 GLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 135 ~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~ 175 (321)
..|+=||-|.|...-.+.+.. .+++++|.+|..++..++-+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYL 120 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhc
Confidence 599999999999999998854 79999999999999887643
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.32 E-value=54 Score=31.93 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCCCEEEEECCC-CchHHHHHHH-cC-CEEEEECCChHHHHHHHH
Q 020824 132 GKNGLVVDVGAN-VGMASFAAAV-MG-FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 132 ~~~~~vvDIGAn-~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~ 173 (321)
..+..++=+||| +|..++..|+ +| .+|+..|..+.-.+..++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 578999999999 8999999998 68 589999999998888776
No 271
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=42.21 E-value=30 Score=32.39 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=32.9
Q ss_pred CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~ 176 (321)
++.++||||||--.+.++-|..- -+|++-|..+.|.+.|++-+.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 56799999999877766655544 479999999999999988754
No 272
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=41.90 E-value=41 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.3
Q ss_pred CHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824 293 SAKEIREFLHSVGYHHCNQHGTDAHCT 319 (321)
Q Consensus 293 ~~~ei~~~L~~~GY~~~~~~G~~~~~~ 319 (321)
...++...|+..||.+..+.|++..+.
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqkGSH~q~k 34 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQKGSHRQYK 34 (66)
T ss_pred CHHHHHHHHHhCCcEEEEeecceeEEE
Confidence 568999999999999999999988765
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=41.87 E-value=28 Score=31.75 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=35.7
Q ss_pred CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~l 177 (321)
+..-+.|||||.|-..+.++- +.--+++.|---..-+..++.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A 106 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA 106 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHH
Confidence 446799999999998887774 467899999988777777766654
No 274
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=41.20 E-value=38 Score=29.80 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=22.4
Q ss_pred ECCC-Cch-HHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 140 VGAN-VGM-ASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 140 IGAn-~G~-~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
||.| +|. .+..+|+.|.+|+++|.+++..+.+.+
T Consensus 6 iGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 6 IGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp E--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred ECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 4543 443 455667789999999999998888864
No 275
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=40.91 E-value=26 Score=33.24 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF 165 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p 165 (321)
.++...+|+||.-|-||+-+-+.+-+|+|+|--|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ 243 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP 243 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccch
Confidence 4789999999999999999999999999999665
No 276
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=40.87 E-value=53 Score=33.84 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=34.6
Q ss_pred CCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
+++.|+=+||| +|...+..++ .|++|+++|.+++..+..++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 68899999998 6777777776 79999999999998777654
No 277
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=40.80 E-value=58 Score=30.14 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=77.0
Q ss_pred EEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCccccc
Q 020824 136 LVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSA 214 (321)
Q Consensus 136 ~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~ 214 (321)
+++|+=||+|-.++-+.+.|+ -|.|+|-++...+.++.|.. .+...=+.+-+.. .+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-------------~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-------------DLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-------------HHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-------------cccc
Confidence 589999999999999999996 58999999999999988863 1111111111100 0000
Q ss_pred cCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcC-CC
Q 020824 215 TGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASN-SS 293 (321)
Q Consensus 215 ~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~-~~ 293 (321)
+-+-....-||-.+...=. +-..++..-..+....++++..+ ..++++|--+....... ..
T Consensus 61 --------~~D~l~ggpPCQ~fS~ag~--------~~~~~d~r~~L~~~~~~~v~~~~--Pk~~~~ENV~~l~~~~~~~~ 122 (335)
T PF00145_consen 61 --------DVDLLIGGPPCQGFSIAGK--------RKGFDDPRNSLFFEFLRIVKELK--PKYFLLENVPGLLSSKNGEV 122 (335)
T ss_dssp --------T-SEEEEE---TTTSTTST--------HHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGGTGGGHHH
T ss_pred --------cceEEEeccCCceEecccc--------ccccccccchhhHHHHHHHhhcc--ceEEEecccceeeccccccc
Confidence 0000001112222221100 00111111145666777777775 35889998877654322 35
Q ss_pred HHHHHHHHHcCCCeEEE
Q 020824 294 AKEIREFLHSVGYHHCN 310 (321)
Q Consensus 294 ~~ei~~~L~~~GY~~~~ 310 (321)
+..+.+.|.+.||.+..
T Consensus 123 ~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 123 FKEILEELEELGYNVQW 139 (335)
T ss_dssp HHHHHHHHHHTTEEEEE
T ss_pred cccccccccccceeehh
Confidence 78999999999999754
No 278
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.73 E-value=43 Score=32.28 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=29.6
Q ss_pred CEEEEECCC-Cch-HHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824 135 GLVVDVGAN-VGM-ASFAAAVMGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 135 ~~vvDIGAn-~G~-~sl~~a~~g~~ViafEP~p~~~~~L~~n~ 175 (321)
..|-=|||| .|. +...++..|.+|+.+|++|+..+.+.+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 456667887 333 55566778999999999998877655433
No 279
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=40.72 E-value=1.1e+02 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=28.5
Q ss_pred CEEEEECCC-CchHHHHHHH---cCCEEEEECCChHHHHHHHHhhh
Q 020824 135 GLVVDVGAN-VGMASFAAAV---MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 135 ~~vvDIGAn-~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
..|+=||+| ....++.+++ .+..|+++|-+|...+.-++.+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 599999999 6667777775 25789999999999988877665
No 280
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=40.56 E-value=1.3e+02 Score=26.48 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 132 GKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 132 ~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
.++..++..||+ +|.....+++ .|.+|++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 467889999988 4666665665 68999999999987777643
No 281
>PHA00007 E cell lysis protein
Probab=39.74 E-value=22 Score=27.19 Aligned_cols=14 Identities=21% Similarity=0.289 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 020824 56 SPSFPAFNCLKCPQ 69 (321)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (321)
..+++|.+|++.|-
T Consensus 53 ~~~LkPln~s~~pc 66 (91)
T PHA00007 53 SVRLKPLNSSRLPC 66 (91)
T ss_pred hccccCCCCCCCce
Confidence 44789999988763
No 282
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=39.73 E-value=86 Score=28.97 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=31.8
Q ss_pred CCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 132 GKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 132 ~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
.++..++..|++ +|.....+++ .|.+|++.+.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 456677778875 4666666666 78999999999998887754
No 283
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=39.33 E-value=99 Score=29.10 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=49.8
Q ss_pred hcCCCCCCchhHHH-HHHHHHHhcCC--CCCEEEEECCCCch--HHHHHHH---c------CCEEEEECCChHHHHHHHH
Q 020824 108 KGKPFRKPDISVTI-QEILEKMKKEG--KNGLVVDVGANVGM--ASFAAAV---M------GFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 108 ~~~~~~~p~~~~~~-~~~L~~~~~~~--~~~~vvDIGAn~G~--~sl~~a~---~------g~~ViafEP~p~~~~~L~~ 173 (321)
.+..||+|+..+.+ +.+++.+.+.. ..-.|.-+||..|. ||+.++- . ..+|+|-|-+...++..++
T Consensus 68 ~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 68 VTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 56778888776655 45566665432 36789999999999 6665541 1 2689999999999988876
Q ss_pred hhh
Q 020824 174 GVW 176 (321)
Q Consensus 174 n~~ 176 (321)
.+.
T Consensus 148 G~Y 150 (268)
T COG1352 148 GIY 150 (268)
T ss_pred CCC
Confidence 543
No 284
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=37.25 E-value=73 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.1
Q ss_pred CCCCEEEEECCCCchHHHHHHH-c------CCEEEEECCC
Q 020824 132 GKNGLVVDVGANVGMASFAAAV-M------GFRVLSFEPV 164 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~-~------g~~ViafEP~ 164 (321)
.++.+|||.|||-|..|.+++. . ..+++.+|=.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4678999999999999999986 2 2578999864
No 285
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=36.81 E-value=42 Score=31.31 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCch-HHHHHHH-cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEEE----e-EecCcc---eEEE
Q 020824 132 GKNGLVVDVGANVGM-ASFAAAV-MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYEA----A-VSDRIG---NITF 200 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~-~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~~----A-lsd~~g---~~~~ 200 (321)
+++-..+|||-|.-. |.+.--+ .||+.++-|-++..++..+.++..| ++...+++... + +.+-.| ..++
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 367789999954332 3333333 6899999999999999999999999 55555554322 1 111122 1111
Q ss_pred EeecCCCCCcccc-ccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEE
Q 020824 201 HKLVGRLDNSAVS-ATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLI 279 (321)
Q Consensus 201 ~~~~~~~~~s~l~-~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~Ii 279 (321)
..-...+..|.-. ..+..-.. .+-...+. ++.+++.+-- .+... ..=+||.|..-+..+..-.+.... .-.-+
T Consensus 157 tlCNPPFh~s~~da~~gsqrk~-~nl~g~l~-~~~~~~~lnf-ggq~q--elwCegGe~afi~~mv~es~afak-qv~Wf 230 (292)
T COG3129 157 TLCNPPFHDSAADARAGSQRKR-RNLGGELG-PTNKLDALNF-GGQQQ--ELWCEGGEVAFIKKMVEESRAFAK-QVFWF 230 (292)
T ss_pred EecCCCcchhHHHHHhcccCCc-cccccccc-ccccchhhhc-cCCce--EEEecCcchhhHHHHHHHHHHHhh-heehh
Confidence 1111111111100 00000000 00000111 3444444422 12333 344799999999999886665531 12233
Q ss_pred EEEcccchhhcCCCHHHHHHHHHcCCCeEE
Q 020824 280 YEEDEHLLQASNSSAKEIREFLHSVGYHHC 309 (321)
Q Consensus 280 iE~~~~~~~~~~~~~~ei~~~L~~~GY~~~ 309 (321)
.+.-.. ..+..++.+-|...|=...
T Consensus 231 ttLisk-----~snlp~l~~~l~~~ga~~v 255 (292)
T COG3129 231 TTLISK-----GSNLPPLYRALTDVGAVKV 255 (292)
T ss_pred eeecCC-----cCCCHHHHHHHHHhcceee
Confidence 443221 2456678888888776543
No 286
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.80 E-value=1e+02 Score=30.66 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=51.7
Q ss_pred HHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcce
Q 020824 126 EKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGN 197 (321)
Q Consensus 126 ~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~ 197 (321)
..++.+++++.++|+-|--|.=|...+. + .++++|||-++.-++.+++.+...+.. ......+|-.++
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~----~~~~~~~df~~t 276 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS----IVESVEGDFLNT 276 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC----ccccccccccCC
Confidence 3455677899999999999998887775 2 489999999999999999988876652 233335555543
No 287
>PRK07201 short chain dehydrogenase; Provisional
Probab=36.60 E-value=3.1e+02 Score=28.36 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=55.2
Q ss_pred hHHHHHHhcCCCCCCchhHHHHHHHHHHhcC--------------CCCCEEEEECCCCchH---HHHHHHcCCEEEEECC
Q 020824 101 KNIVRLLKGKPFRKPDISVTIQEILEKMKKE--------------GKNGLVVDVGANVGMA---SFAAAVMGFRVLSFEP 163 (321)
Q Consensus 101 ~~i~r~l~~~~~~~p~~~~~~~~~L~~~~~~--------------~~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP 163 (321)
.+..+.+.+..++-|.+.+.+..+++.+.++ -.+.+++=.||+-|.- ...+++.|++|+++.-
T Consensus 324 ~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r 403 (657)
T PRK07201 324 RETRAALKGSGIEVPRLASYAPRLWDYWERHLDPDRARRRDLRGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVAR 403 (657)
T ss_pred HHHHHHhccCCcCCCChHHHHHHHHHHHHhcCChhhhcccCcccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4566777777778787766555554433211 1356888899976663 3344567999999998
Q ss_pred ChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 164 VFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 164 ~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
++...+.+.+.+... ..++.++.+=+++
T Consensus 404 ~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~ 431 (657)
T PRK07201 404 NGEALDELVAEIRAK--GGTAHAYTCDLTD 431 (657)
T ss_pred CHHHHHHHHHHHHhc--CCcEEEEEecCCC
Confidence 887766665444321 1245554444433
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.26 E-value=36 Score=27.01 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.5
Q ss_pred CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 144 VGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 144 ~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
+|...+.+++ .|++|++++.++.-.+.+++
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 5778887877 79999999999998888875
No 289
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.83 E-value=60 Score=30.95 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=34.4
Q ss_pred EEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhh
Q 020824 137 VVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGV 175 (321)
Q Consensus 137 vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~ 175 (321)
|+|+=||.|-.++-+.+.|.+ +.++|-++...+.++.|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 589999999999999888987 467999999999998875
No 290
>PRK07063 short chain dehydrogenase; Provisional
Probab=35.43 E-value=1.5e+02 Score=26.46 Aligned_cols=62 Identities=21% Similarity=0.125 Sum_probs=38.4
Q ss_pred CCCEEEEECCCCch---HHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC
Q 020824 133 KNGLVVDVGANVGM---ASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR 194 (321)
Q Consensus 133 ~~~~vvDIGAn~G~---~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~ 194 (321)
.+.+++=.||.-|. ....+++.|++|+.+.-++...+.+.+.+.......++..+.+=+.+.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA 70 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence 35688888987665 233455679999999888777666655543211123455555555443
No 291
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.31 E-value=1.2e+02 Score=29.02 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCEEEEECCCCch---HHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCc
Q 020824 133 KNGLVVDVGANVGM---ASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRI 195 (321)
Q Consensus 133 ~~~~vvDIGAn~G~---~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~ 195 (321)
.|.+++==|+|.|. .++.+|+.|++++..|-|.+..+.-.+.++.+| +++.+.+=+++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~e 99 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDRE 99 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHH
Confidence 67899999999998 577778899999999988887766666665443 5777777777654
No 292
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=35.27 E-value=2e+02 Score=28.54 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC----------------------------------------
Q 020824 117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF---------------------------------------- 156 (321)
Q Consensus 117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~---------------------------------------- 156 (321)
+.+.+...+-.+..-.++..++|==||.|++.+.+|.++.
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 4555555555555445667999999999999998886542
Q ss_pred -EEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824 157 -RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA 189 (321)
Q Consensus 157 -~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~ 189 (321)
.++++|-+|..++..+.|....++.+.|++...
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~ 288 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQA 288 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 377999999999999999887777655555443
No 293
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=33.59 E-value=2.2e+02 Score=23.97 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhh
Q 020824 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~ 175 (321)
.+.++++.+.+..-+-+++|.+++.+.....+.. ...-|+-++|++..+..+...+
T Consensus 82 ~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~ 138 (195)
T PF01656_consen 82 LLREILESLIKSDYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLI 138 (195)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHH
Confidence 3556666655433568999999999998665554 4578999999998776665443
No 294
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=33.55 E-value=1.4e+02 Score=29.49 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=38.1
Q ss_pred hcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHH
Q 020824 108 KGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 108 ~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~ 172 (321)
-+..|+.|+. ....++.+++++|+=|.. -|...+.... ...+|+|||-||.-...++
T Consensus 17 Y~~~WEDp~v-------D~~aL~i~~~d~vl~ItS-aG~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 17 YAQCWEDPRV-------DMEALNIGPDDRVLTITS-AGCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred eccccCCcHH-------HHHHhCCCCCCeEEEEcc-CCchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 3456677744 334455578899999964 3555554443 3489999999998766665
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=33.19 E-value=1.1e+02 Score=29.57 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=34.6
Q ss_pred cCCCCCEEEEECCCC-chHHHHHHH-cCC-EEEEECCChHHHHHHHHh
Q 020824 130 KEGKNGLVVDVGANV-GMASFAAAV-MGF-RVLSFEPVFENLQRICDG 174 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~-G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~n 174 (321)
+..++.+++.+||+. |..+..+++ .|. +|++++.+++..+.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345678999999865 667776766 675 699999999888887653
No 296
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=33.07 E-value=24 Score=28.26 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=14.6
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHH
Q 020824 4 AWKRDTKHPKLTPKILLSLLFPCLLLFFI 32 (321)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (321)
.||.+ |.-.|---++.|++.|+|+|+|+
T Consensus 7 ~~~~~-kgFTLvEMLiVLlIISiLlLl~i 34 (107)
T COG4537 7 FLKHK-KGFTLVEMLIVLLIISILLLLFI 34 (107)
T ss_pred HHHhc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 34444 33334444455555677766666
No 297
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=31.99 E-value=1.3e+02 Score=28.46 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=45.5
Q ss_pred hcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCch--HHHHHH--Hc------CCEEEEECCChHHHHHHHHhhh
Q 020824 108 KGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGM--ASFAAA--VM------GFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 108 ~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~--~sl~~a--~~------g~~ViafEP~p~~~~~L~~n~~ 176 (321)
....||+|...+.+.+.+. +..+.-.|+..||..|. ||+.+. .. ..+|+|.|-++..++..++.+.
T Consensus 93 eT~FFRd~~~f~~L~~~~~---~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 93 LTAFFREAHHFPILAEHAR---RRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred CCCccCCcHHHHHHHHHHH---hcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 5667888766554444332 11234799999999999 565553 21 2689999999999999886643
No 298
>CHL00024 psbI photosystem II protein I
Probab=31.49 E-value=26 Score=22.60 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCC
Q 020824 25 PCLLLFFIFYFNSHSYNPNPN 45 (321)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ 45 (321)
+....+|+|=|+|+.+..+|+
T Consensus 13 ~ffvsLFifGFlsnDp~RnP~ 33 (36)
T CHL00024 13 IFFVSLFIFGFLSNDPGRNPG 33 (36)
T ss_pred HHHHHHHHccccCCCCCCCCC
Confidence 334445566667777765554
No 299
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=31.44 E-value=1.1e+02 Score=28.35 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchH--HHHHHHcCCEEEEECCChH
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMA--SFAAAVMGFRVLSFEPVFE 166 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~--sl~~a~~g~~ViafEP~p~ 166 (321)
+++++.+.+...-+++| ||||..-. ++.+++.|.+|..+|-.+.
T Consensus 14 ~~~~~~~~~~~~~DVvI-VGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 14 EEYFEKLLDYLEVDVAI-VGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred HHHHHHHHHhccCCEEE-ECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 34455554444456666 99986554 3344568999999997653
No 300
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=31.36 E-value=2.3e+02 Score=23.76 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhh
Q 020824 119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
..++..+..+....-+-+++|.+++.+.....+.. ...-++..+|.+..+....+.+.
T Consensus 54 ~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~ 114 (169)
T cd02037 54 GAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAID 114 (169)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHH
Confidence 33455555543234568999999999877665542 34567777999888777666554
No 301
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=31.30 E-value=62 Score=29.88 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=21.2
Q ss_pred CcccccccCCCCCCChHHHHHHH--HHHHHHHHHHHhhC
Q 020824 1 MANAWKRDTKHPKLTPKILLSLL--FPCLLLFFIFYFNS 37 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 37 (321)
||-..|+..+.+.-.|++++..- .+|||-||+.+++-
T Consensus 1 m~~~k~k~~~~~~~~~~WlvtyaDl~TLLL~FFVlL~sm 39 (252)
T PRK06667 1 MAMRKKKCPKCIQGAPEYMLTYGDMVTLLLCFFVMLFTT 39 (252)
T ss_pred CCCccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 55544433233445688877766 66666666655443
No 302
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=30.59 E-value=1e+02 Score=28.86 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~ 173 (321)
.-.+++||||+.|..+-.+...| .+++..|-+..+++..+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc
Confidence 34789999999999998888766 689999999988887654
No 303
>PRK00536 speE spermidine synthase; Provisional
Probab=30.16 E-value=1.3e+02 Score=28.08 Aligned_cols=45 Identities=9% Similarity=-0.198 Sum_probs=38.6
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
+.++....|+=||.|.|-......+...+|+.+|-+++..+..++
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFIS 112 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHH
Confidence 344566899999999999999988855699999999999988876
No 304
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=29.70 E-value=2e+02 Score=25.55 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCCEEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 133 KNGLVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
++.+++=.||+-|.- ...+++.|++|+.+.-+++..+.+.+.+..++ .++..+.+=+.+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCC
Confidence 467888899876663 33445579999999988877666655544322 345555444443
No 305
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.85 E-value=65 Score=32.14 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=29.2
Q ss_pred cCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECC--ChHHHHHHHH
Q 020824 130 KEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEP--VFENLQRICD 173 (321)
Q Consensus 130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP--~p~~~~~L~~ 173 (321)
+.++++++.|.|.|+|.-....+.. + .+=++||- +|..+..++.
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~ 236 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNK 236 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHH
Confidence 4479999999999999977666653 3 34555653 4444444443
No 306
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=28.78 E-value=58 Score=29.60 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHH
Q 020824 131 EGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQR 170 (321)
Q Consensus 131 ~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~ 170 (321)
..++.+|+|+=-|-|+||-.++. .| ++|++|=|+......
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~ 88 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFA 88 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccc
Confidence 35889999999999999999986 33 699999998664333
No 307
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=28.55 E-value=90 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.4
Q ss_pred EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824 157 RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA 190 (321)
Q Consensus 157 ~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A 190 (321)
+|+|||-..+.++.-++.++.+++.+++++++..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~s 34 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDS 34 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 6999999999999999988887776677776654
No 308
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=28.29 E-value=1.2e+02 Score=28.25 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=34.2
Q ss_pred CCCcEEEEecCCch--HHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCe--EEEEeCCcccee
Q 020824 244 EPVLLLKIDVQGWE--YHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYH--HCNQHGTDAHCT 319 (321)
Q Consensus 244 ~~idlLKIDVEG~E--~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~--~~~~~G~~~~~~ 319 (321)
+++.++.||+.=+| .++|......+... -+|++ +..... .-.+.+.+|++++|.. +...+++..+..
T Consensus 176 ~~IAll~lD~DlYesT~~aLe~lyprl~~G----GiIi~--DDY~~~---gcr~AvdeF~~~~gi~~~l~~id~~~v~w~ 246 (248)
T PF05711_consen 176 ERIALLHLDCDLYESTKDALEFLYPRLSPG----GIIIF--DDYGHP---GCRKAVDEFRAEHGITDPLHPIDWTGVYWR 246 (248)
T ss_dssp --EEEEEE---SHHHHHHHHHHHGGGEEEE----EEEEE--SSTTTH---HHHHHHHHHHHHTT--S--EE-SSS-EEEE
T ss_pred ccEEEEEEeccchHHHHHHHHHHHhhcCCC----eEEEE--eCCCCh---HHHHHHHHHHHHcCCCCccEEecCceEEEe
Confidence 68899999988665 45666655544432 13333 333322 2357889999999987 345555555555
Q ss_pred cC
Q 020824 320 KD 321 (321)
Q Consensus 320 ~~ 321 (321)
||
T Consensus 247 k~ 248 (248)
T PF05711_consen 247 KE 248 (248)
T ss_dssp --
T ss_pred cC
Confidence 54
No 309
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=27.56 E-value=34 Score=22.30 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=10.4
Q ss_pred HHHHHHHhhCCCCCCCCC
Q 020824 28 LLFFIFYFNSHSYNPNPN 45 (321)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (321)
..+|+|=|+|+.|..+|+
T Consensus 16 vsLFiFGflsnDP~RnP~ 33 (38)
T PRK02655 16 VGLFVFGFLSSDPTRNPG 33 (38)
T ss_pred HHHHHcccCCCCCCCCCC
Confidence 334555567776665554
No 310
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=27.52 E-value=1.2e+02 Score=33.17 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCCCceEeEEEeeeecceeeecccCCCCCCCchhHHHHHHh-----------cCCCCCCchhHHHHHHHHH
Q 020824 59 FPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLK-----------GKPFRKPDISVTIQEILEK 127 (321)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~l~~~~~~~i~r~l~-----------~~~~~~p~~~~~~~~~L~~ 127 (321)
-++.+|-++-+.+-+|--.|++.||-|.+..++ |..+|.+...+.+ .+....|-+ .+.|+ |+.
T Consensus 47 ~~~~~~~~~~n~ssvvilliDaLrydf~ip~~~----~~~y~n~~~~l~~~~~l~~~~~~l~~f~ADpPT-TTlQR-LKG 120 (895)
T KOG2126|consen 47 PPVADGRSSQNYSSVVILLIDALRYDFLIPINS----PLPYHNRGTILQELKHLNKSKAFLAKFIADPPT-TTLQR-LKG 120 (895)
T ss_pred CccccchhccCccceEEEEeehhhhccccccCC----CchhhhcchhHHHHHhhCcchhHHHHHhcCCCc-cHHHH-hhc
Confidence 456788778788889999999999999998885 4445544422111 111222222 12344 344
Q ss_pred HhcCCCCCEEEEECCCCc
Q 020824 128 MKKEGKNGLVVDVGANVG 145 (321)
Q Consensus 128 ~~~~~~~~~vvDIGAn~G 145 (321)
+-. |.=.+++|+|-|-+
T Consensus 121 LTT-GsLPTFID~GsNF~ 137 (895)
T KOG2126|consen 121 LTT-GSLPTFIDIGSNFA 137 (895)
T ss_pred ccc-CCCccceeccccCC
Confidence 332 55689999999975
No 311
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=26.49 E-value=1.8e+02 Score=29.02 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=37.0
Q ss_pred CCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhhh
Q 020824 133 KNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~l 177 (321)
.-..++=+|.|.|...-.+.+ ++ .+|+-+|-+|.+++..+++..+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 345788899999998888877 54 7999999999999998866443
No 312
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=26.37 E-value=1.9e+02 Score=22.54 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=33.8
Q ss_pred CCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824 134 NGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+-+++|.+++.+..+..+.. ...-++-++|++..+..+.+.+.
T Consensus 44 D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~ 87 (106)
T cd03111 44 DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLE 87 (106)
T ss_pred CEEEEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHHHHHHHHH
Confidence 57999999999987665544 45678888999998888776654
No 313
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.30 E-value=2.6e+02 Score=20.61 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHH---HHHHcCCEEEEECCC
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASF---AAAVMGFRVLSFEPV 164 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl---~~a~~g~~ViafEP~ 164 (321)
+...|.++...-+..++|--||-.|.-.+ |+.+.|..++.|.|+
T Consensus 20 i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 20 IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 33445555544466777777775777544 445579999999987
No 314
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.29 E-value=1.7e+02 Score=29.00 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred CCEEEEECCCCchHHHHHHH-cCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824 134 NGLVVDVGANVGMASFAAAV-MGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYE 188 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~ 188 (321)
...|+|.=++.|.-.+.++. .+. +|++=|-+|..++.+++|+.+|.. .+..++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n 108 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVIN 108 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeec
Confidence 57999999999999999887 454 899999999999999999999943 2444444
No 315
>PRK07102 short chain dehydrogenase; Provisional
Probab=26.03 E-value=2.6e+02 Score=24.59 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=37.2
Q ss_pred EEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCc
Q 020824 136 LVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRI 195 (321)
Q Consensus 136 ~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~ 195 (321)
+++=.||.-|.- ...+++.|++|+++.-++...+.+.+.+..+. ..+++++.+-+.+.+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTA 64 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChH
Confidence 577788876553 33444578999999888776666555544332 246677766665543
No 316
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=25.56 E-value=83 Score=34.13 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=40.6
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
..+..++|==||-|...+.+.++|+.|+|+|-||..+-.|++.++
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 356778898899999999999999999999999999999988776
No 317
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=25.50 E-value=1.2e+02 Score=28.27 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=28.3
Q ss_pred CCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhh
Q 020824 134 NGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGV 175 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~ 175 (321)
.-.++++|||.|...+.+|. .++.|+.=+. |.....|..|.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~ 128 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNR 128 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhh
Confidence 45799999999999999988 4566655443 44445555443
No 318
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.02 E-value=3.1e+02 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=36.4
Q ss_pred CCCEEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 133 KNGLVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
.+.+++=.||.-|.- ...+++.|++|++..-++...+.+.+.+.......++..+.+=+.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 457888899876663 3344567899999988877666554443321111245555554444
No 319
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.76 E-value=3e+02 Score=24.33 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
+.+.+..+.....+-+++|.+++.+..+..+.. ...-++-++|++..+..+.+
T Consensus 103 l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 103 LARLLQQLDLAARDWVLIDVPRGPSPITRQALAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred HHHHHHhcccCCCCEEEEECCCCchHHHHHHHHhCCeEEEEeCCCHHHHHHHHH
Confidence 345555554322368999999999987776655 45678888999988877763
No 320
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=24.46 E-value=1.7e+02 Score=29.57 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=43.2
Q ss_pred hcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCC
Q 020824 129 KKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVG 181 (321)
Q Consensus 129 ~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~ 181 (321)
+.+.++.+|+|.-|--|-=|.++|. +. +-|+|-|-+..-...+.+|+..-++.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ 292 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT 292 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC
Confidence 4567999999999998886666654 43 78999999999999999998866653
No 321
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=24.45 E-value=1.6e+02 Score=28.43 Aligned_cols=41 Identities=32% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCCEEEEECCC-CchHHHHHHH-cC-CEEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGAN-VGMASFAAAV-MG-FRVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn-~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~ 173 (321)
++++++=+||| +|..+..+++ .| .+|+++|.+++-.+..++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 44589999998 8888877777 57 689999999998888766
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=24.26 E-value=1.1e+02 Score=28.93 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=26.3
Q ss_pred EEEECCC-Cch-HHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824 137 VVDVGAN-VGM-ASFAAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 137 vvDIGAn-~G~-~sl~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
|.=||+| +|. .+..+++.|.+|+.+|++++..+....
T Consensus 5 V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 5 VAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHH
Confidence 4556766 343 355556679999999999988776554
No 323
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=24.08 E-value=2.2e+02 Score=28.49 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHH
Q 020824 133 KNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRI 171 (321)
Q Consensus 133 ~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L 171 (321)
++.+++=+|+| +|......++ .|++|+.+|++|.-.+..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA 241 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence 68899999997 5666665555 789999999998755443
No 324
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=23.99 E-value=5.1e+02 Score=24.16 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHH
Q 020824 134 NGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQ 169 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~ 169 (321)
+-+++|.|||.+..++.+.. ...-|+...|.|..+.
T Consensus 114 D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~ 150 (262)
T COG0455 114 DYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSIT 150 (262)
T ss_pred CEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHH
Confidence 68999999999998876654 3566888888877555
No 325
>PRK09242 tropinone reductase; Provisional
Probab=23.79 E-value=3.1e+02 Score=24.33 Aligned_cols=61 Identities=21% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCEEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 133 KNGLVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
++.+++=.||.-|.- ...+++.|++|+++.-+++..+.+.+.+....-..++..+.+=+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 456888899976653 3334457899999988877776666555432111245555444443
No 326
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.78 E-value=79 Score=24.98 Aligned_cols=7 Identities=43% Similarity=0.282 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020824 17 KILLSLL 23 (321)
Q Consensus 17 ~~~~~~~ 23 (321)
|++|||.
T Consensus 4 K~~llL~ 10 (95)
T PF07172_consen 4 KAFLLLG 10 (95)
T ss_pred hHHHHHH
Confidence 4444333
No 327
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.61 E-value=2.1e+02 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCEEEEEC--CCCchHHH-HHHHcCCEEEEECCChHHHHHHHH
Q 020824 134 NGLVVDVG--ANVGMASF-AAAVMGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 134 ~~~vvDIG--An~G~~sl-~~a~~g~~ViafEP~p~~~~~L~~ 173 (321)
|.+++--| ||+|.-.. .+++.|++|+||--++.+...|-+
T Consensus 7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~ 49 (245)
T KOG1207|consen 7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVK 49 (245)
T ss_pred ceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHh
Confidence 34555444 45555443 445689999999999998887753
No 328
>PRK08267 short chain dehydrogenase; Provisional
Probab=23.08 E-value=2.8e+02 Score=24.63 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=34.4
Q ss_pred EEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824 136 LVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD 193 (321)
Q Consensus 136 ~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd 193 (321)
+++=+||+-|.- +..+++.|++|+++..++...+.+.+.+. ..+++++.+=+.+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCC
Confidence 577788876652 33445678999999988877766655432 1345555554444
No 329
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=22.86 E-value=3.1e+02 Score=26.68 Aligned_cols=41 Identities=10% Similarity=-0.067 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824 132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC 172 (321)
Q Consensus 132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~ 172 (321)
+.+-+|+-||.|--..--++++..++|.++|-||.-+..-+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~ 102 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHH
Confidence 67899999998866555566677799999999998655433
No 330
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.60 E-value=3.2e+02 Score=24.75 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824 122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n 174 (321)
.+++..+....-+-+++|.+++.+..+..+.. ...-++-++|++..+..+.+.
T Consensus 103 ~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l~~ad~vivv~~p~~~sl~~~~~~ 156 (270)
T PRK10818 103 AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRI 156 (270)
T ss_pred HHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHhCCeEEEEcCCCchHHHhHHHH
Confidence 34455443223568999999999998776654 456788899998877655443
No 331
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.57 E-value=95 Score=30.29 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=32.9
Q ss_pred CCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824 132 GKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 132 ~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n 174 (321)
+++..+.=+|++ .|...+-+|+ +|++|++|+=+++-.+..++.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 577888888887 3345666666 899999999999988777654
No 332
>PRK10927 essential cell division protein FtsN; Provisional
Probab=22.23 E-value=1.2e+02 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhCCCC
Q 020824 12 PKLTPKILLSLLFPCLLLFFIFYFNSHSY 40 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (321)
+..||.++.|.+.+|++++--|||.+|..
T Consensus 30 ~~~~~~m~alAvavlv~fiGGLyFith~k 58 (319)
T PRK10927 30 PAVSPAMVAIAAAVLVTFIGGLYFITHHK 58 (319)
T ss_pred CCcchHHHHHHHHHHHHHhhheEEEecCC
Confidence 33467666666666666666777788744
No 333
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.98 E-value=1.9e+02 Score=27.31 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCCEEEEECCC-CchHHHHHHH-cCC-EEEEECCChHHHHHHHH
Q 020824 133 KNGLVVDVGAN-VGMASFAAAV-MGF-RVLSFEPVFENLQRICD 173 (321)
Q Consensus 133 ~~~~vvDIGAn-~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~ 173 (321)
++++++=+||+ +|.....+++ .|+ +|++++.+++..+.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 46666667874 4445555555 687 69999999988887764
No 334
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=21.93 E-value=90 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=17.9
Q ss_pred ECCCCchHH--HHHHHcCCEEEEECCChH
Q 020824 140 VGANVGMAS--FAAAVMGFRVLSFEPVFE 166 (321)
Q Consensus 140 IGAn~G~~s--l~~a~~g~~ViafEP~p~ 166 (321)
|||+++-.+ ..+++.|.+|..||-++.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 688765532 233457899999998775
No 335
>PRK05867 short chain dehydrogenase; Provisional
Probab=21.63 E-value=3.3e+02 Score=24.06 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 133 KNGLVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
++.+++=.||.-|.= ...+++.|++|+...-+++..+.+.+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG 54 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 457888899876653 33445678999998888777766665544
No 336
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.41 E-value=1.4e+02 Score=27.70 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=26.9
Q ss_pred EEEEECCCC-ch-HHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824 136 LVVDVGANV-GM-ASFAAAVMGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 136 ~vvDIGAn~-G~-~sl~~a~~g~~ViafEP~p~~~~~L~~n 174 (321)
.|-=||||. |. .+..+++.|.+|+.+|++++..+.+.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 345568763 22 2344456789999999999988877655
No 337
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.23 E-value=4.1e+02 Score=23.92 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=37.8
Q ss_pred CCCEEEEECCCCchH---HHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC
Q 020824 133 KNGLVVDVGANVGMA---SFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR 194 (321)
Q Consensus 133 ~~~~vvDIGAn~G~~---sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~ 194 (321)
++.+++=.||+-|.= ...+++.|++|+...-++...+.+.+.+.... ..++..+.+=+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKR 70 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCH
Confidence 356788889876663 34445679999999888776666655443211 13455555555443
No 338
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.22 E-value=82 Score=25.78 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.0
Q ss_pred HHHHHHhcCCCCCEEEEECCCC
Q 020824 123 EILEKMKKEGKNGLVVDVGANV 144 (321)
Q Consensus 123 ~~L~~~~~~~~~~~vvDIGAn~ 144 (321)
+++.++ .+|+.|+=+|.=+
T Consensus 32 em~~sL---k~GD~VvT~GGi~ 50 (113)
T PRK06531 32 NQLNAI---QKGDEVVTIGGLY 50 (113)
T ss_pred HHHHhc---CCCCEEEECCCcE
Confidence 344444 3779999888433
No 339
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=21.09 E-value=1.1e+02 Score=29.72 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHH
Q 020824 119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAA 152 (321)
Q Consensus 119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a 152 (321)
+.+.+++... ..+..-+|.|+||..|..|+.+.
T Consensus 3 ~ai~~~~~~~-~~~~~~~iaD~GcS~G~Nsl~~~ 35 (334)
T PF03492_consen 3 EAIKELYNSS-NNPKPFRIADLGCSSGPNSLLAV 35 (334)
T ss_dssp HHHHHHHHST-TTTTEEEEEEES--SSHHHHHHH
T ss_pred HHHHHHHhcC-CCCCceEEEecCCCCCccHHHHH
Confidence 3344444322 23466899999999999988763
No 340
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.93 E-value=1.4e+02 Score=24.87 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=24.0
Q ss_pred CCEEEEECCCCchHHHHH---HHcCCEEEEECCChH
Q 020824 134 NGLVVDVGANVGMASFAA---AVMGFRVLSFEPVFE 166 (321)
Q Consensus 134 ~~~vvDIGAn~G~~sl~~---a~~g~~ViafEP~p~ 166 (321)
.+.+++|| +|.+...+ ++.|+.|++.|-++.
T Consensus 14 ~gkVvEVG--iG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVG--IGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred CCcEEEEc--cchHHHHHHHHHHcCCcEEEEecccc
Confidence 35899999 56665544 457999999999887
No 341
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=20.93 E-value=2.4e+02 Score=21.64 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=27.9
Q ss_pred cCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCC
Q 020824 253 VQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGY 306 (321)
Q Consensus 253 VEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY 306 (321)
|||--...-+...+.|.........+-+-.....+.-.+....++.+||.+.||
T Consensus 34 I~GD~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 34 IEGDIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred ecCCHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHCcC
Confidence 455555555555555544311001222222222222223457899999999998
No 342
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.81 E-value=1.1e+02 Score=28.39 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.4
Q ss_pred CCCchHHHHHH------HcCCEEEEECCChHHHHHHHHhhhh
Q 020824 142 ANVGMASFAAA------VMGFRVLSFEPVFENLQRICDGVWF 177 (321)
Q Consensus 142 An~G~~sl~~a------~~g~~ViafEP~p~~~~~L~~n~~l 177 (321)
.|+|..|+.++ +.|.+|+++|-+|.|.=++.-++..
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 47888887663 3689999999999998888766543
No 343
>PRK08862 short chain dehydrogenase; Provisional
Probab=20.65 E-value=3.4e+02 Score=24.02 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=30.1
Q ss_pred CCEEEEECCCCch---HHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824 134 NGLVVDVGANVGM---ASFAAAVMGFRVLSFEPVFENLQRICDGVW 176 (321)
Q Consensus 134 ~~~vvDIGAn~G~---~sl~~a~~g~~ViafEP~p~~~~~L~~n~~ 176 (321)
+.+++=.||+.|. ....+++.|++|+.+--++...+.+.+.+.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 4678888888777 344556678999998777776666554443
No 344
>CHL00175 minD septum-site determining protein; Validated
Probab=20.51 E-value=4.3e+02 Score=24.16 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDG 174 (321)
Q Consensus 121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n 174 (321)
+.+++..+.+..-+-++||.+++.+.....+.. ...-++-++|++..+..+.+.
T Consensus 115 l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~l~~aD~viiV~~p~~~si~~~~~~ 169 (281)
T CHL00175 115 MNMLVDSLKNRGYDYILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRDADRV 169 (281)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHhcCeeEEEcCCChHHHHHHHHH
Confidence 445555554313468999999999886655543 456788899999877655443
No 345
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=20.25 E-value=3e+02 Score=25.54 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=31.9
Q ss_pred cCCCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824 130 KEGKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICD 173 (321)
Q Consensus 130 ~~~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~ 173 (321)
+..++..++-.||+ .|.....+++ .|.+|++...+++..+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 33466778888875 3555555565 69999999999988887753
Done!