Query 020825
Match_columns 321
No_of_seqs 107 out of 111
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3635 Predicted phosphoglyce 100.0 3.4E-43 7.3E-48 342.3 16.6 173 80-315 231-408 (408)
2 PRK04135 cofactor-independent 100.0 1.5E-37 3.2E-42 306.2 20.1 171 79-321 220-395 (395)
3 PRK04024 cofactor-independent 100.0 1.6E-36 3.5E-41 300.3 17.1 180 80-321 228-412 (412)
4 PRK04200 cofactor-independent 100.0 1.6E-33 3.5E-38 277.6 15.1 169 82-311 220-394 (395)
5 TIGR02535 hyp_Hser_kinase prop 100.0 2E-32 4.4E-37 269.9 15.8 169 82-310 221-395 (396)
6 TIGR00306 apgM 2,3-bisphosphog 100.0 2E-32 4.3E-37 270.0 15.6 169 80-310 222-395 (396)
7 PF01676 Metalloenzyme: Metall 99.9 7.5E-23 1.6E-27 189.5 8.7 229 7-310 2-250 (252)
8 PRK12383 putative mutase; Prov 99.4 2.7E-12 5.9E-17 128.0 13.0 95 85-202 234-329 (406)
9 TIGR01696 deoB phosphopentomut 98.8 6.2E-08 1.3E-12 96.4 14.2 165 83-320 212-379 (381)
10 PRK05434 phosphoglyceromutase; 98.8 3.4E-08 7.4E-13 101.3 10.1 147 82-315 343-494 (507)
11 PLN02538 2,3-bisphosphoglycera 98.6 2.6E-07 5.6E-12 95.7 10.1 59 136-202 404-463 (558)
12 PRK05362 phosphopentomutase; P 98.3 4.7E-06 1E-10 83.4 11.8 69 135-217 259-329 (394)
13 TIGR01307 pgm_bpd_ind 2,3-bisp 97.5 0.00035 7.6E-09 72.2 9.3 59 136-202 365-424 (501)
14 cd00016 alkPPc Alkaline phosph 97.1 0.0082 1.8E-07 60.0 12.8 141 135-314 231-383 (384)
15 COG1015 DeoB Phosphopentomutas 96.4 0.026 5.7E-07 56.7 10.2 75 118-203 248-325 (397)
16 KOG4513 Phosphoglycerate mutas 94.2 0.28 6.2E-06 50.0 9.3 56 139-202 391-447 (531)
17 COG0696 GpmI Phosphoglyceromut 92.6 0.61 1.3E-05 48.6 9.0 57 138-202 374-431 (509)
18 PF01663 Phosphodiest: Type I 91.1 0.31 6.8E-06 45.6 4.6 58 158-217 181-241 (365)
19 PRK04135 cofactor-independent 80.8 1.4 3.1E-05 44.7 3.2 38 4-41 6-53 (395)
20 PRK10518 alkaline phosphatase; 76.6 22 0.00047 37.2 10.3 140 135-314 324-474 (476)
21 TIGR02535 hyp_Hser_kinase prop 74.8 2.5 5.5E-05 42.7 3.0 35 7-41 2-47 (396)
22 PRK04200 cofactor-independent 66.7 4.9 0.00011 40.6 3.0 35 7-41 2-47 (395)
23 PRK04024 cofactor-independent 66.1 4.8 0.0001 41.0 2.8 35 7-41 4-49 (412)
24 PRK01395 V-type ATP synthase s 64.0 31 0.00068 28.6 6.8 51 95-167 2-52 (104)
25 COG3635 Predicted phosphoglyce 63.4 6.1 0.00013 40.4 2.9 39 6-45 4-53 (408)
26 PF00884 Sulfatase: Sulfatase; 62.7 29 0.00063 31.2 6.9 192 9-217 4-246 (308)
27 PRK02228 V-type ATP synthase s 59.6 82 0.0018 25.8 8.5 67 97-199 1-68 (100)
28 TIGR00306 apgM 2,3-bisphosphog 58.4 6.4 0.00014 39.9 2.1 33 9-41 1-44 (396)
29 COG1436 NtpG Archaeal/vacuolar 56.1 62 0.0013 27.2 7.3 68 95-197 1-68 (104)
30 KOG0780 Signal recognition par 55.1 1.4E+02 0.0029 31.4 10.7 158 87-293 118-292 (483)
31 smart00098 alkPPc Alkaline pho 49.0 84 0.0018 32.4 8.3 71 135-217 234-305 (419)
32 KOG2126 Glycosylphosphatidylin 48.9 27 0.00058 39.1 5.0 67 136-217 190-259 (895)
33 PRK10649 hypothetical protein; 47.7 3.7E+02 0.0081 28.6 18.6 233 23-318 261-533 (577)
34 COG0552 FtsY Signal recognitio 46.2 1E+02 0.0022 31.2 8.2 67 84-167 153-228 (340)
35 KOG2645 Type I phosphodiestera 40.8 84 0.0018 32.5 6.9 62 135-202 155-219 (418)
36 COG1785 PhoA Alkaline phosphat 40.5 1.2E+02 0.0026 32.1 8.0 69 135-217 280-351 (482)
37 PF12964 DUF3853: Protein of u 38.6 31 0.00068 28.9 2.8 53 53-125 13-65 (96)
38 TIGR02335 hydr_PhnA phosphonoa 37.5 99 0.0021 31.4 6.8 39 159-199 187-228 (408)
39 PRK03957 V-type ATP synthase s 34.9 1.1E+02 0.0023 25.1 5.4 50 97-167 1-51 (100)
40 PRK13759 arylsulfatase; Provis 34.5 1.3E+02 0.0029 30.7 7.2 31 185-217 273-303 (485)
41 PRK01189 V-type ATP synthase s 32.1 1.2E+02 0.0027 25.2 5.4 51 95-167 1-52 (104)
42 KOG2125 Glycosylphosphatidylin 29.4 97 0.0021 34.3 5.4 57 159-217 190-249 (760)
43 PF00448 SRP54: SRP54-type pro 27.7 1.3E+02 0.0028 27.3 5.2 57 96-169 29-92 (196)
44 cd00758 MoCF_BD MoCF_BD: molyb 26.6 97 0.0021 26.0 4.0 49 104-171 20-68 (133)
45 COG1524 Uncharacterized protei 25.4 53 0.0011 33.1 2.5 45 158-202 215-262 (450)
46 PRK12723 flagellar biosynthesi 24.2 7.2E+02 0.016 25.3 10.3 26 265-293 339-365 (388)
47 COG0541 Ffh Signal recognition 22.6 3.5E+02 0.0077 28.4 7.8 157 90-303 123-296 (451)
48 TIGR02667 moaB_proteo molybden 21.6 2.5E+02 0.0054 24.7 5.7 48 107-171 26-73 (163)
49 PRK14974 cell division protein 21.2 8.2E+02 0.018 24.3 10.6 26 265-293 306-331 (336)
50 PRK11598 putative metal depend 20.8 5.9E+02 0.013 27.1 9.2 102 184-316 422-527 (545)
51 PRK11560 phosphoethanolamine t 20.4 4.5E+02 0.0098 28.1 8.3 98 184-316 436-539 (558)
No 1
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=342.34 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=156.6
Q ss_pred cccCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccC
Q 020825 80 KWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS 159 (321)
Q Consensus 80 ~~~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~ 159 (321)
.-...|.+|+|+||| |||||||++++++||+|+++|||||++||+||+.|| +|++++++++++| +
T Consensus 231 gag~~P~ip~F~e~y-glk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~dt----n~~~k~k~a~eal----------~ 295 (408)
T COG3635 231 GAGRYPKIPSFQERY-GLKGACIAAVPLIKGLARLVGMDVIEVEGATGYIDT----NYRGKAKAAIEAL----------K 295 (408)
T ss_pred CCCCCCCCCCHhHhh-CcceEEEEecHHHHhHHHHhCCceeecccccCccCc----cHHHHHHHHHHHH----------h
Confidence 345689999999999 999999999999999999999999999999999997 9999999999999 9
Q ss_pred cccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhccccc
Q 020825 160 QFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEK 238 (321)
Q Consensus 160 ~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~ 238 (321)
+|||||||++++|+++|+|+ ++|+++||+||++++++++ +... ..+++|++
T Consensus 296 ~yDfv~vhik~tDeagHdG~~e~Kv~~IE~iD~~i~pll~-~~~~------~~~i~vt~--------------------- 347 (408)
T COG3635 296 EYDFVFVHIKATDEAGHDGDFEGKVRVIEDIDKAIGPLLD-LDLD------EDVIAVTG--------------------- 347 (408)
T ss_pred hCCEEEEEeccCccccCCCCHHHhHHHHHHHHHHhhhhhc-cccC------CcEEEEeC---------------------
Confidence 99999999999999999999 9999999999999999987 3221 25778885
Q ss_pred CcccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHhc
Q 020825 239 SSDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLW 314 (321)
Q Consensus 239 p~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ 314 (321)
||+|| +|++||||++| |.. .+|+|+|+.|+|.+|++ |++|+|+|.++|++++.+++
T Consensus 348 ----------------DHsTPv~vk~Hs~dPVPili--~~~-~v~~D~v~~F~E~~~~~-G~Lgri~g~dlm~ill~~~~ 407 (408)
T COG3635 348 ----------------DHSTPVSVKDHSGDPVPILI--YGP-YVRRDDVKRFDEFSCAR-GSLGRIRGSDLMPILLDLAG 407 (408)
T ss_pred ----------------CCCCcccccccCCCCccEEE--ecC-CcccCccceecHhhhhc-CCcceeehHHHHHHHHHhhc
Confidence 56666 56699999999 666 44999999999999877 99999999999999999987
Q ss_pred C
Q 020825 315 K 315 (321)
Q Consensus 315 k 315 (321)
|
T Consensus 408 r 408 (408)
T COG3635 408 R 408 (408)
T ss_pred C
Confidence 6
No 2
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=100.00 E-value=1.5e-37 Score=306.22 Aligned_cols=171 Identities=20% Similarity=0.366 Sum_probs=154.4
Q ss_pred ccccCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCccccc
Q 020825 79 LKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEV 158 (321)
Q Consensus 79 ~~~~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~ 158 (321)
+.....|.+|+|+||| |||||+||+++++||||+++||+||. +|+ +|.+++++++++|
T Consensus 220 rg~G~~p~lp~F~e~~-Glkga~Ia~~~l~kGi~~~~Gm~~i~-~ga----------~~~~k~~~a~~~l---------- 277 (395)
T PRK04135 220 RGFSKKPDFPSFEEVY-KLKAAAIASYPMYRGLAKLVGMDVLP-TGQ----------TLEDEIKTLKENW---------- 277 (395)
T ss_pred cCCCCCCCCCCHHHHh-CCceEEEehhHHHHHHHHHcCCeecC-CCC----------CHHHHHHHHHHHH----------
Confidence 3446789999999999 99999999999999999999999999 885 8999999999999
Q ss_pred CcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccc
Q 020825 159 SQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDE 237 (321)
Q Consensus 159 ~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~ 237 (321)
++|||||||++++|+++|+|+ ++|+++||+||+.+..++ .+++ .+++|+|
T Consensus 278 ~~~DfV~vhvk~~DeaGH~gd~~~Kv~~IE~iD~~l~~ll-~l~~--------~~ivVT~-------------------- 328 (395)
T PRK04135 278 NDYDFFFLHVKKTDSYGEDGNFEEKVKVIEEVDALLPEIL-ALKP--------DVLVITG-------------------- 328 (395)
T ss_pred hcCCEEEEEeccCchhhccCCHHHHHHHHHHHHHHHHHHh-cCCC--------cEEEEeC--------------------
Confidence 889999999999999999999 889999999999877888 4321 2677886
Q ss_pred cCcccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHh
Q 020825 238 KSSDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKL 313 (321)
Q Consensus 238 ~p~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL 313 (321)
||.|| +|+++|||++|++. ..|+|.+++|+|.++.+ ||+++++|.++|+.++.++
T Consensus 329 -----------------DH~TP~~~~~Hs~dPVP~li~g~---~~~~D~v~~F~E~~~~~-G~L~~~~G~~lm~~~l~~~ 387 (395)
T PRK04135 329 -----------------DHSTPAVLKGHSWHPVPLLLYSK---YCRPDLSQRFTERECAR-GGLGHIPAVDLMPLALAHA 387 (395)
T ss_pred -----------------CCCCcccccccCCCCEeEEEEcC---CCCCCCCCccCHHHHcC-CCcCcccHHHHHHHHHHhh
Confidence 66676 68899999999444 66889999999999777 9999999999999999999
Q ss_pred cCCcCCCC
Q 020825 314 WKAPKYGA 321 (321)
Q Consensus 314 ~kapKYGA 321 (321)
+|+.||||
T Consensus 388 ~~~~~~G~ 395 (395)
T PRK04135 388 LRLEKYGA 395 (395)
T ss_pred hhHhhcCC
Confidence 99999997
No 3
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=100.00 E-value=1.6e-36 Score=300.33 Aligned_cols=180 Identities=21% Similarity=0.283 Sum_probs=162.0
Q ss_pred cccCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccC
Q 020825 80 KWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS 159 (321)
Q Consensus 80 ~~~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~ 159 (321)
.....|.+|+|.||| |||+|+|+++++++|+|+++||+|+.+||+||+.+| ||.+|+++++++| +
T Consensus 228 G~G~~p~lp~f~er~-gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t----~~~~k~~~~~~~l----------~ 292 (412)
T PRK04024 228 GAGEVPEIPKFTEKY-GLKAACVAGTALIKGIARMVGMDVITVEGATGGKDT----NYMAKAKAAVELL----------K 292 (412)
T ss_pred CCCCCCCCCCHHHhc-CCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCC----CHHHHHHHHHHHh----------c
Confidence 335689999999999 999999999999999999999999999999999997 9999999999999 7
Q ss_pred cccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhccccc
Q 020825 160 QFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEK 238 (321)
Q Consensus 160 ~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~ 238 (321)
+|||||+|++++|++||.|+ ++|+++||.||+.|+.|++.++.. + .+++|++
T Consensus 293 ~~Dfv~vh~~~~D~~GH~gd~~~k~~aiE~iD~~l~~il~~l~~~-~-----~~liITa--------------------- 345 (412)
T PRK04024 293 EYDFVLLNIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLDLD-E-----VYIAVTG--------------------- 345 (412)
T ss_pred cCCEEEEeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcC-C-----CEEEEec---------------------
Confidence 89999999999999999999 999999999999999999887421 1 3567775
Q ss_pred CcccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHhc
Q 020825 239 SSDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLW 314 (321)
Q Consensus 239 p~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ 314 (321)
||.|| +|+++|||++|+ ++ .+|+|.++.|+|.+|.+ ||+++|+|.++|+.++.+++
T Consensus 346 ----------------DHgtp~~~~~HT~~pVP~ii~--g~-~v~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l~~~~ 405 (412)
T PRK04024 346 ----------------DHSTPVEVKDHSGDPVPILIY--GP-GVRVDDVEKFNELSAAK-GGLGRIRGLDVMPILLDLMN 405 (412)
T ss_pred ----------------CCCCCcccccCCCCCEeEEEE--cC-CccCCCCCccCHHHHhC-CCCCcccHHHHHHHHHHHhc
Confidence 44444 688999999994 44 56899999999999777 99999999999999999999
Q ss_pred CCcCCCC
Q 020825 315 KAPKYGA 321 (321)
Q Consensus 315 kapKYGA 321 (321)
|+.||||
T Consensus 406 ~~~~~g~ 412 (412)
T PRK04024 406 RAEKFGA 412 (412)
T ss_pred hHhhcCC
Confidence 9999998
No 4
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=100.00 E-value=1.6e-33 Score=277.57 Aligned_cols=169 Identities=21% Similarity=0.291 Sum_probs=150.7
Q ss_pred cCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcc
Q 020825 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (321)
Q Consensus 82 ~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~ 161 (321)
...|.+|+|.||| |||+++|+++++++|+|+++||+|+.+||+||+.|| ||.+|+++++++| ++|
T Consensus 220 G~~p~~p~f~e~~-gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~a~~~l----------~~~ 284 (395)
T PRK04200 220 GYAPKMPSFKEKY-GLKGAVISAVDLLKGIGIYAGLDVIEVPGATGYLDT----NYEGKAEAALEAL----------KTH 284 (395)
T ss_pred CCCCCCCCHHHhc-CCceEEEeccHHHHHHHHHcCCccccCCCccccccc----chHHHHHHHHHHh----------ccC
Confidence 4589999999999 999999999999999999999999999999999997 9999999999999 789
Q ss_pred cEEEEeccCCCCCCCccc-hhhhhhhHHHHH-HHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccC
Q 020825 162 DLVLVHIGAGEKTNDDKG-KAVAHDLEYINA-LVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKS 239 (321)
Q Consensus 162 DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~-lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p 239 (321)
||||||++++|+++|+|+ ++|+++||.||+ +++++++.++.. + .++++|++
T Consensus 285 DfV~vh~~~~D~aGH~gd~~~kv~aiE~lD~~~~~~ll~al~~~-~----~~~l~it~---------------------- 337 (395)
T PRK04200 285 DFVFVHVEAPDEAGHEGDLEAKIKAIEDIDERVVGPILEALKKY-E----DYRILVLP---------------------- 337 (395)
T ss_pred CEEEEEecCcchhhccCCHHHHHHHHHHHHHHhHHHHHHHHHhc-C----CCEEEEec----------------------
Confidence 999999999999999999 889999999999 577899886420 0 13677775
Q ss_pred cccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHH
Q 020825 240 SDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAF 311 (321)
Q Consensus 240 ~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evaf 311 (321)
||.|| +|+.+|||++| +++ .+|.|.|+.|+|.+|.+ ||+++|+|.++|+.++.
T Consensus 338 ---------------DH~tp~~~~~Ht~~pVP~ii--~g~-~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l~ 394 (395)
T PRK04200 338 ---------------DHPTPIELKTHTADPVPFLI--YGE-GIEPDGVQTFDEKSARK-GGLGLVEGCELMELLLK 394 (395)
T ss_pred ---------------cCCcCCCCCccCCCCEeEEE--EcC-CcCCCCCCccCHHHHcC-CCcccccHHHHHHHHhh
Confidence 55555 68899999999 555 67889999999999877 99999999999999875
No 5
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=100.00 E-value=2e-32 Score=269.85 Aligned_cols=169 Identities=20% Similarity=0.317 Sum_probs=149.4
Q ss_pred cCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcc
Q 020825 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (321)
Q Consensus 82 ~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~ 161 (321)
...|.+|+|.||| |||+++|+++++++|+|+++||+|+.+||+||+.|| ||.+|+++++++| ++|
T Consensus 221 G~~p~~p~f~e~~-gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~~~~~l----------~~~ 285 (396)
T TIGR02535 221 GGAPKMPTFSERY-GIRGAMISAVDLLKGIGIYAGLERIEVEGATGYLDT----NYEGKVRAALEAL----------ETY 285 (396)
T ss_pred CCCCCCCCHHHhc-CCceEEEeccHHHHHHHHHcCCccccCCcccccccc----chHHHHHHHHHHH----------hhC
Confidence 4589999999999 999999999999999999999999999999999996 9999999999999 789
Q ss_pred cEEEEeccCCCCCCCccc-hhhhhhhHHHHH-HHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccC
Q 020825 162 DLVLVHIGAGEKTNDDKG-KAVAHDLEYINA-LVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKS 239 (321)
Q Consensus 162 DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~-lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p 239 (321)
||||||++++|+++|+|+ ++|+++||.+|+ ++++++++++.. + ...+++|++
T Consensus 286 Dfv~vh~~~~D~aGH~gd~~~kv~aIE~lD~~~~~~ll~al~~~---~-~~~~~~vt~---------------------- 339 (396)
T TIGR02535 286 DFVVVHVEAPDEAGHEGDLEAKIKAIELIDSRIVGPLLEALSDR---D-EPFRILVLP---------------------- 339 (396)
T ss_pred CEEEEEeCCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc---C-CCeEEEEee----------------------
Confidence 999999999999999999 889999999999 577899886321 0 013677775
Q ss_pred cccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHH
Q 020825 240 SDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVA 310 (321)
Q Consensus 240 ~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~eva 310 (321)
||.|| +|+.+|||++|+.. .+|.|.+++|+|.+|.+ |+++++.|.++|+.++
T Consensus 340 ---------------DH~tp~~~~~Ht~~pVP~ii~g~---~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~~ 395 (396)
T TIGR02535 340 ---------------DHPTPLELKTHTAEPVPFLLYGK---GIESDSVKTFDEKSARR-GGIGFVKGCELMDALI 395 (396)
T ss_pred ---------------eCccCCCCCccCCCCEeEEEEeC---CcCCCCCCccCHHHHcC-CCcccccHHHHHHHHh
Confidence 45555 68899999999544 57899999999999877 9999999999999875
No 6
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=100.00 E-value=2e-32 Score=270.03 Aligned_cols=169 Identities=15% Similarity=0.241 Sum_probs=150.1
Q ss_pred cccCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccC
Q 020825 80 KWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVS 159 (321)
Q Consensus 80 ~~~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~ 159 (321)
.....|.+|+|.||| |||+|+|+++++++|+|+++||+|+.+||+||+.+| +|.+|+++++++| +
T Consensus 222 G~G~~p~l~~f~er~-gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~~dt----~~~~k~~~~~~~l----------~ 286 (396)
T TIGR00306 222 GAGRMPRVESFKERY-GLRGAMIAEVDLIKGLARLIGMDVIRVEGATGGIDT----DYRGKVRALILAL----------E 286 (396)
T ss_pred CCCCCCCCCCHHHhc-CCceEEEechHHHHHHHHHcCCeeecCCcccccccc----cHHHHHHHHHHHh----------h
Confidence 334689999999999 999999999999999999999999999999999997 9999999999999 7
Q ss_pred cccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhccccc
Q 020825 160 QFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEK 238 (321)
Q Consensus 160 ~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~ 238 (321)
+|||||||++++|+++|.|+ ++|+++||.+|+.+..+++.++.. ..+++|++
T Consensus 287 ~yDfv~v~~~~~D~aGH~gd~~~k~~aIE~iD~~l~~~l~~l~~~------~~~liiTa--------------------- 339 (396)
T TIGR00306 287 EYDFVLVHTKGPDEAGHDGDPELKVRAIEKIDSKIVGPLLALDLD------ETRLILTA--------------------- 339 (396)
T ss_pred cCCEEEEEecCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhC------CCEEEEeC---------------------
Confidence 89999999999999999999 889999999999887668776432 14677775
Q ss_pred CcccccccCCcccccCCCCCC----CCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHH
Q 020825 239 SSDLSALFPRQSYTMKGETPR----NDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVA 310 (321)
Q Consensus 239 p~~~~~l~P~QSY~~kdh~tp----~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~eva 310 (321)
||.|| +|+++|||++|+.. .+|+|.|++|+|.+|.+ |++++|+|.++|+.++
T Consensus 340 ----------------DHgtp~~~~~Ht~~pVP~ii~g~---~~~~d~~~~f~E~~~~~-g~l~~~~g~~lm~~~l 395 (396)
T TIGR00306 340 ----------------DHSTPVEVKDHSADPVPIVIVGP---GVRVDEVKSFNEFACRK-GALGRIRGEDLMDILL 395 (396)
T ss_pred ----------------CCCCCCCCCCCCCCCeeEEEEeC---CccCCCCCCcChHHHhC-CCCCcccHHHHHHHHh
Confidence 44454 58899999999544 67899999999999887 9999999999999886
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.88 E-value=7.5e-23 Score=189.46 Aligned_cols=229 Identities=19% Similarity=0.313 Sum_probs=168.8
Q ss_pred ceEEEeccCcccccCC--------CchhhHHHhh------hccccc-eecCCCCCCChhhHHHHHHHHHHhccccccccC
Q 020825 7 KALVLYGDGLARFVEP--------SHAHLHSLAS------KAACGF-LSLPIAPPSESEEERIVREFAVLIDANQDYLSG 71 (321)
Q Consensus 7 r~lvl~~dG~~~~~~~--------~~~hl~~~as------~~~cGf-L~l~~~~~~~~~~~~~~~e~aqLld~~~~~~~~ 71 (321)
|.++|-.||+..--.+ ...+|+.||. .+.||. +.+|.. ---+ -|.+++--+...
T Consensus 2 r~ilivlDG~G~g~~~~~t~l~~a~tptld~la~~~p~~~~~~~G~~~~lp~g---~~g~----S~~~~~~~~~~~---- 70 (252)
T PF01676_consen 2 RVILIVLDGLGDGPMPDATPLEDAGTPTLDHLAAAYPHALLGASGLMVGLPPG---QLGG----SDVGHLAIFRGA---- 70 (252)
T ss_dssp EEEEEEETTBC-SCBTTTGHHHHSTEHHHHHHHHHSCEEEEBESGGGGTSSTT---CHTH----HHHHHHHHEECE----
T ss_pred cEEEEEeccCCCCCCCCcChHhhcCCcHHHHHHHhhcccccccccCcccCCCC---CcCC----cccccccccccc----
Confidence 7899999999876655 4789999999 888886 555421 1111 122333223233
Q ss_pred CCCccccccccCCCCCC-ChhhhhcCCcEEEEecCchhhhHhhhhC-CeeeecCcccccCCCCCCCChHHH--HHHHHHH
Q 020825 72 IGEHTTELKWEEKSPFQ-TISDRFMGLKAALITTNSRLKSFGDKLG-FATLQLNELIETSDSLSGSPIDVV--ASELLKL 147 (321)
Q Consensus 72 ~~~~~~~~~~~~~p~~p-~f~ErymglKaA~It~~~llkg~g~~lG-~~Vi~v~g~tg~~dt~~~~~~~~~--a~~al~l 147 (321)
...+.+| +|.++| ||++++|+.+.++.+++.++| ++|+..+|+|+..++ ++.++ ++++++.
T Consensus 71 ----------~~~~~~~~~~~~~~-~l~~~~ia~~~~~~~i~~~~~g~~v~~~~g~t~~~~~----~~~~~~~~~~~~~~ 135 (252)
T PF01676_consen 71 ----------GDYPNLPPSFTEKY-GLKGAGIAETPKIGGIADFFGGMDVISVEGATGDVDP----DMSAKEIAEAAIEA 135 (252)
T ss_dssp ----------EEEES-HHHHHHHC-THHEEEEEECHHHHHHHHHTTTEEEE--STSSCCGST----TTTHHHHHHHHHHH
T ss_pred ----------ccccccccceeecc-CceecceecccccceeHHHhCCccccccccccccccc----chhhHHHHHHHHHh
Confidence 1344466 999999 999999999999999999999 999999999999886 76555 8899988
Q ss_pred hccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccC
Q 020825 148 LGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADN 226 (321)
Q Consensus 148 Lg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~ 226 (321)
| +..+|||||+|+..+|++||.++ +++.++||++|+.|+.|++.++.. + .+++|++ ||
T Consensus 136 l--------~~~~~~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~-~-----~~liiTa-------DH 194 (252)
T PF01676_consen 136 L--------KKDKYDFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLGRLLEALDKE-D-----DLLIITA-------DH 194 (252)
T ss_dssp H--------HHTTSSEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHT-T-----EEEEEEE-------SS
T ss_pred h--------hcccCCeEEEeecCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcC-C-----CEEEEEC-------CC
Confidence 8 34789999999999999999999 899999999999999999987321 1 4677775 36
Q ss_pred CccchhhcccccCcccccccCCcccccCCCCCCCCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHH
Q 020825 227 SNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFL 306 (321)
Q Consensus 227 ~~~~v~~~~~~~p~~~~~l~P~QSY~~kdh~tp~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m 306 (321)
. ++. ++++ ..|+++|||+++ |++ ..|.|.+..|++.+... +..+.+.|..+|
T Consensus 195 g----------~~~-----------~~~~---~~Ht~~~VPll~--~g~-~~~~~~~~~~~~~~di~-~ti~~~~G~~~~ 246 (252)
T PF01676_consen 195 G----------NDE-----------TMGH---TSHTREPVPLLI--YGP-GVRGDSVGEFGELADIA-PTILELLGLELP 246 (252)
T ss_dssp B----------STT-----------TSBS---SS-B-B-EEEEE--ECT-TEEE-SC-STSBCGHHH-HHHHHHHTGGHH
T ss_pred C----------Ccc-----------ccCC---cCCCCceEEEEE--EeC-CCccCccCcCCEEehHH-HHHHHHcCCCch
Confidence 5 233 1222 238899999999 554 67889999999999787 999999999988
Q ss_pred HHHH
Q 020825 307 HEVA 310 (321)
Q Consensus 307 ~eva 310 (321)
+++.
T Consensus 247 ~~~~ 250 (252)
T PF01676_consen 247 EEMT 250 (252)
T ss_dssp TTCH
T ss_pred Hhhc
Confidence 7754
No 8
>PRK12383 putative mutase; Provisional
Probab=99.40 E-value=2.7e-12 Score=128.00 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=81.7
Q ss_pred CCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEE
Q 020825 85 SPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLV 164 (321)
Q Consensus 85 p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlV 164 (321)
+.+|+|.++| |+++++| |+.. +++..+|+|++..+ .+.+.++.+++++|. ...+|||
T Consensus 234 ~~v~~~l~~~-G~~v~~V---------GKi~--Di~s~~G~t~~~~~---~~t~~~~~~~l~aL~--------~~~~dlv 290 (406)
T PRK12383 234 VQVPQKLYEA-GVPVVLV---------GKVA--DIVNNPYGVSWQNL---VDTQRVMDITLDEFN--------THPTAFI 290 (406)
T ss_pred chhhhHHHHc-CCCEEEE---------EEhH--HeeccCCccccccc---CCHHHHHHHHHHHHh--------cCCCCEE
Confidence 7899999999 9999999 4444 88889999996654 366699999999992 2348999
Q ss_pred EEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 165 LVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 165 fvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
|+|+..+|.+||.++ +.+..+||.+|+.|+.|++.+++
T Consensus 291 fvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~ll~~L~~ 329 (406)
T PRK12383 291 CTNIQETDLAGHAEDVARYAERLEVVDRNLARLLEAMTP 329 (406)
T ss_pred EEeccCCccccccCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 88888999999999999988764
No 9
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=98.83 E-value=6.2e-08 Score=96.41 Aligned_cols=165 Identities=11% Similarity=0.131 Sum_probs=103.8
Q ss_pred CCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCccc
Q 020825 83 EKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD 162 (321)
Q Consensus 83 ~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~D 162 (321)
-.|+-|++.||- .=.+.-++.+..+ .|.+.-.|+|....+ .+.+..+++++++|. ...+|
T Consensus 212 ~~p~~pTvld~l-~~aG~~V~~VGki--------~DiF~g~Glt~a~~~---~~~~~~~~~~l~aL~--------~~~~~ 271 (381)
T TIGR01696 212 LKPFAPTVLQKL-KDEGHDVISIGKI--------ADIYDGEGITKKVRT---TSNMDGMDATIKEMK--------EDFTG 271 (381)
T ss_pred CCCCCCCHHHHH-HHCCCeEEEEccH--------HhEecCCCcccccCC---CCHHHHHHHHHHHHh--------cCCCC
Confidence 345566777766 3333333333332 123344555554433 367778889998882 13489
Q ss_pred EEEEeccCCCC-CCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccCc
Q 020825 163 LVLVHIGAGEK-TNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSS 240 (321)
Q Consensus 163 lVfvHv~a~d~-a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p~ 240 (321)
|||+|+...|. +||.++ +....+||.+|+.|+.|++.++++ .+++|++ ||-. -|.
T Consensus 272 lif~nl~d~D~~~GH~~d~~~y~~ale~vD~~Lg~ll~~L~~~-------tllIITA-------DHG~---------Dp~ 328 (381)
T TIGR01696 272 ISFTNLVDFDALWGHRRDVAGYAAALELFDRRLPELFSLLRED-------DLLIITA-------DHGN---------DPT 328 (381)
T ss_pred EEEEEeCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHhccC-------CEEEEEC-------CCCC---------CCC
Confidence 99999999995 799999 888889999999999999988642 2456663 3531 011
Q ss_pred ccccccCCcccccCCCCCCCCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHhcCC-cCC
Q 020825 241 DLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKA-PKY 319 (321)
Q Consensus 241 ~~~~l~P~QSY~~kdh~tp~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ka-pKY 319 (321)
. .-.+|+|++||++++..+ .+.- ..+ +- +.-..++.+.++..++-. |.+
T Consensus 329 ------------~---~~t~HTre~VPlIi~gp~---i~~g--~~l--------~~--~~slaDIapTIldllGv~~p~~ 378 (381)
T TIGR01696 329 ------------W---TGTDHTREYIPVLVYSPK---VKPG--HSL--------GH--RETFADIGATIADNFGTSDPEY 378 (381)
T ss_pred ------------C---CCCcCCCCCEeEEEEECC---CCCC--cee--------CC--CCEehhHHHHHHHHcCcCCCCC
Confidence 0 002478999999994432 2211 001 11 234578899999988866 777
Q ss_pred C
Q 020825 320 G 320 (321)
Q Consensus 320 G 320 (321)
|
T Consensus 379 G 379 (381)
T TIGR01696 379 G 379 (381)
T ss_pred C
Confidence 6
No 10
>PRK05434 phosphoglyceromutase; Provisional
Probab=98.76 E-value=3.4e-08 Score=101.34 Aligned_cols=147 Identities=13% Similarity=0.194 Sum_probs=103.9
Q ss_pred cCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcc
Q 020825 82 EEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF 161 (321)
Q Consensus 82 ~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~ 161 (321)
...+.+|. .||| ++++.+|+..++. |++ +...++.++++.|. ..+|
T Consensus 343 G~~~~~~~-e~r~-~~~s~~va~yd~~--------------p~M----------s~~e~~d~~i~~l~--------~~~~ 388 (507)
T PRK05434 343 GREEPFPG-EDRI-LIPSPKVATYDLK--------------PEM----------SAYEVTDKLVEAIE--------SGKY 388 (507)
T ss_pred CcCCCCCC-ceee-ecCCceeecccCC--------------CCC----------cHHHHHHHHHHHHh--------ccCC
Confidence 34677888 9999 9999999888874 222 44557889998882 2579
Q ss_pred cEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccCc
Q 020825 162 DLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSS 240 (321)
Q Consensus 162 DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p~ 240 (321)
||||||+..+|.+||.|+ ++++++||.+|+.|+.|++.++.. . .+++|++ ||-..-
T Consensus 389 Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~~--g----~ivIITA-------DHGn~e---------- 445 (507)
T PRK05434 389 DFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLKV--G----GTLLITA-------DHGNAE---------- 445 (507)
T ss_pred CEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhC--C----CEEEEEc-------CCCccc----------
Confidence 999999999999999999 888899999999999999887531 1 2566664 364110
Q ss_pred ccccccCCcccccCCC----CCCCCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHhcC
Q 020825 241 DLSALFPRQSYTMKGE----TPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWK 315 (321)
Q Consensus 241 ~~~~l~P~QSY~~kdh----~tp~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~k 315 (321)
.|.++ +...|+..|||++|+. +...+ + ..| ...++.+.++..||-
T Consensus 446 -----------~m~d~~tg~~~~~HT~~~VPlII~~--p~~i~-~-----------~~~-----sL~DIaPTIL~LlGi 494 (507)
T PRK05434 446 -----------QMIDPETGQPHTAHTTNPVPFILVG--GKALR-L-----------EGG-----KLADIAPTILDLLGL 494 (507)
T ss_pred -----------ccccCCCCCcccCCCCeeeEEEEEE--CCccc-C-----------CCc-----cHHHHHHHHHHHhCc
Confidence 01111 1225778999999843 31111 1 112 458899999988874
No 11
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=98.57 E-value=2.6e-07 Score=95.68 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 136 ~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
....++.++++.+ ...+|||||+|+..+|.+||.|+ ++++++||.+|+.|+.|++.++.
T Consensus 404 SA~eVtd~~i~~i--------~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~ 463 (558)
T PLN02538 404 KALEIAEKARDAL--------LSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQ 463 (558)
T ss_pred CHHHHHHHHHHHH--------hcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888877 33579999999999999999999 88888999999999999988743
No 12
>PRK05362 phosphopentomutase; Provisional
Probab=98.33 E-value=4.7e-06 Score=83.42 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCC-CCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEE
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHL 212 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~-a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~ 212 (321)
.++..++.++++.|. +..+++|||+|+...|. .+|.++ +....+||.+|+.|+.|++.++.. .+
T Consensus 259 ~~~~~~~~~ale~L~-------~~~~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~~-------tl 324 (394)
T PRK05362 259 KSNMDGMDATIEEMK-------EAGDNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKED-------DL 324 (394)
T ss_pred CCHHHHHHHHHHHHH-------hCCCCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhccC-------CE
Confidence 377889999999881 02468999999999998 499999 888889999999999999987542 35
Q ss_pred EEEEe
Q 020825 213 SVVLS 217 (321)
Q Consensus 213 ~lVl~ 217 (321)
++|++
T Consensus 325 liiTa 329 (394)
T PRK05362 325 LIITA 329 (394)
T ss_pred EEEeC
Confidence 66664
No 13
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=97.54 E-value=0.00035 Score=72.15 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 136 ~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
....++.++++.| +...|||||+|+..+|..||.|+ ++..++||.+|..||.|++.++.
T Consensus 365 sa~evtd~~i~~I--------~~~k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke 424 (501)
T TIGR01307 365 SAKAVTDAVLEAI--------AQGKFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKK 424 (501)
T ss_pred CHHHHHHHHHHHH--------hccCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778888877 23569999999999999999999 68888999999999999998754
No 14
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=97.09 E-value=0.0082 Score=59.98 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=85.9
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEeccC--CCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceE
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLH 211 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a--~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~ 211 (321)
++.....++++++|. +..+-.||||+. .|.++|..+ ..+...++.+|..|+.+++.++.. + ..
T Consensus 231 psL~emt~~al~~L~---------~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~~~-~----dT 296 (384)
T cd00016 231 PSLAEMTEKAIDVLS---------KNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAKKD-G----DT 296 (384)
T ss_pred CCHHHHHHHHHHHHH---------hcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhCC-C----Ce
Confidence 578889999999992 334777788886 899999988 777889999999999999887521 1 14
Q ss_pred EEEEEeccccccccCCccc-hhhcccccCcc------cccccCCcccccCCC--CCCCCCCCCccEEEEEccccceecCC
Q 020825 212 LSVVLSYGQVLEADNSNLS-VLISIDEKSSD------LSALFPRQSYTMKGE--TPRNDVRHHCPMLISQWQYAVTRKDM 282 (321)
Q Consensus 212 ~~lVl~yg~~~~d~~~~~~-v~~~~~~~p~~------~~~l~P~QSY~~kdh--~tp~h~rdpvP~li~~~~~~~tR~D~ 282 (321)
+++|++ ||...- ++-........ ....+....|+.-.- ++-+|++.+||++.++.+. .
T Consensus 297 LiIvTA-------DHg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg~~Vpv~a~Gp~a--~---- 363 (384)
T cd00016 297 LVVVTA-------DHSHGGTILGYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGGEDVPVFAYGPGS--H---- 363 (384)
T ss_pred EEEEEC-------CCCCCccccCCCCCCCcccccccccccccCCCCceEEEecCCCCCCcCceeeEEeecCCc--c----
Confidence 677774 465321 11110000000 001111122221111 3457999999999955543 1
Q ss_pred CcccChHHHHhccCCcceeHHhHHHHHHHHhc
Q 020825 283 AETFSFKDFKEHGGYLTIPADRFLHEVAFKLW 314 (321)
Q Consensus 283 v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ 314 (321)
.|. |.+.-.++.|.|++.|+
T Consensus 364 --~f~----------g~~ent~I~~~i~~al~ 383 (384)
T cd00016 364 --LFR----------GVMENTEIAHVMAYALG 383 (384)
T ss_pred --ccC----------cceecHHHHHHHHHHhc
Confidence 222 25666777777776554
No 15
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.026 Score=56.75 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=54.0
Q ss_pred eeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcc-cEEEEeccCCC-CCCCccc-hhhhhhhHHHHHHHH
Q 020825 118 ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQF-DLVLVHIGAGE-KTNDDKG-KAVAHDLEYINALVR 194 (321)
Q Consensus 118 ~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~-DlVfvHv~a~d-~a~h~G~-~~k~~~IE~iD~lVg 194 (321)
|++.-.|.|....+ .+.+......++.++ ...+ .|||.++.-.| ..||--+ ..=+++||.+|+-+.
T Consensus 248 DI~~~~Git~~~~~---~~n~~~~d~tl~~~~--------~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~ 316 (397)
T COG1015 248 DIYAGQGITEKVKA---VSNMDGMDVTLEEMK--------TAEFNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLP 316 (397)
T ss_pred hhhccccccccccC---CCcHHHHHHHHHHHh--------cCCCCcEEEEeeeecccccccccchHHHHHHHHHHHHHHH
Confidence 45555666665543 244555666676662 2233 59999999998 7899777 666679999999999
Q ss_pred HHHHhcCCC
Q 020825 195 VILQMAQPA 203 (321)
Q Consensus 195 ~il~~~~~~ 203 (321)
.+++.++++
T Consensus 317 e~~~~l~ed 325 (397)
T COG1015 317 ELIENLRED 325 (397)
T ss_pred HHHHhcCCC
Confidence 999999874
No 16
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.28 Score=49.97 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 139 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 139 ~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
.+|.++.+.+ +...||+|.|++..+|-.+|-|+ |.-+.+.|--|..|+.|.++.+.
T Consensus 391 eva~ka~~~i--------e~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~ 447 (531)
T KOG4513|consen 391 EVAEKARDAI--------ESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQ 447 (531)
T ss_pred HHHHHHHHHH--------HcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4555555554 34679999999999999999999 88888999999999999988643
No 17
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=92.61 E-value=0.61 Score=48.59 Aligned_cols=57 Identities=14% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 138 DVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 138 ~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
-.+..++++.+ +...||+++++..-+|-.+|.|. +.-++++|-+|.=||.+.+....
T Consensus 374 ~evtd~~~~~i--------~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~ 431 (509)
T COG0696 374 KEVTDALVEAI--------EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKK 431 (509)
T ss_pred HHHHHHHHHHH--------hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666655 33458999999999999999999 78888999999999999887653
No 18
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=91.06 E-value=0.31 Score=45.58 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=42.9
Q ss_pred cCcccEEEEeccCCCCCCC---ccchhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEe
Q 020825 158 VSQFDLVLVHIGAGEKTND---DKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLS 217 (321)
Q Consensus 158 ~~~~DlVfvHv~a~d~a~h---~G~~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~ 217 (321)
..+.||+++|+..+|..+| ..+.+-...+.++|..|+.+++.++.. .......++|++
T Consensus 181 ~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~--~~~~~~~iiv~S 241 (365)
T PF01663_consen 181 KERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDEN--GLLEDTNIIVTS 241 (365)
T ss_dssp TTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHT--T-TTTEEEEEEE
T ss_pred hCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCCCceEEEEEc
Confidence 4679999999999999988 323556679999999999999887643 111125566665
No 19
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=80.77 E-value=1.4 Score=44.73 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCCceEEEeccCcccccCC----------CchhhHHHhhhccccceec
Q 020825 4 KPSKALVLYGDGLARFVEP----------SHAHLHSLASKAACGFLSL 41 (321)
Q Consensus 4 kpsr~lvl~~dG~~~~~~~----------~~~hl~~~as~~~cGfL~l 41 (321)
.|+|.|||-+||++..--+ ..+|||.||+.|.||.+--
T Consensus 6 ~~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~Gl~~~ 53 (395)
T PRK04135 6 NDSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDLGLLIP 53 (395)
T ss_pred CCCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCccccee
Confidence 5889999999999987643 5889999999999998753
No 20
>PRK10518 alkaline phosphatase; Provisional
Probab=76.62 E-value=22 Score=37.24 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEecc--CCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceE
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG--AGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLH 211 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~--a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~ 211 (321)
+......+++|++|. ++-+=-||-|| ..|.+.|..+ ..-...+-.+|+.|+..++-++... ..
T Consensus 324 PsLaeMT~kAI~~Ls---------kn~~GFFLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~~~-----dT 389 (476)
T PRK10518 324 PTLAQMTDKAIDLLK---------KNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDG-----NT 389 (476)
T ss_pred CCHHHHHHHHHHHhc---------cCCCceEEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC-----Ce
Confidence 467778999999993 22232345555 4678889877 5555577889999999988876521 26
Q ss_pred EEEEEeccccccccCCccc-hhhcccccCccccc-------ccCCcccccCCCCCCCCCCCCccEEEEEccccceecCCC
Q 020825 212 LSVVLSYGQVLEADNSNLS-VLISIDEKSSDLSA-------LFPRQSYTMKGETPRNDVRHHCPMLISQWQYAVTRKDMA 283 (321)
Q Consensus 212 ~~lVl~yg~~~~d~~~~~~-v~~~~~~~p~~~~~-------l~P~QSY~~kdh~tp~h~rdpvP~li~~~~~~~tR~D~v 283 (321)
++||+. ||+... +.......| -+.. ....=||-...+.+-+|++..||+..++.+. +.
T Consensus 390 LVIVTA-------DH~h~~~i~g~~~~~~-g~~~~~~~~dg~~~~l~y~~g~g~s~~HtG~dV~v~A~GP~A-----~~- 455 (476)
T PRK10518 390 LVIVTA-------DHAHSSQIIAPDAKAP-GLTQALNTKDGAVMVVSYGNSEEDSQEHTGTQLRIAAYGPHA-----AN- 455 (476)
T ss_pred EEEEEc-------cCCCcceecCCCCCCC-CcccccccCCCCeeEEEeccCCCCCcCcCCceeEEEecCCcc-----cc-
Confidence 888884 577433 332111112 1100 0011244444334557999999999955543 21
Q ss_pred cccChHHHHhccCCcceeHHhHHHHHHHHhc
Q 020825 284 ETFSFKDFKEHGGYLTIPADRFLHEVAFKLW 314 (321)
Q Consensus 284 ~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ 314 (321)
|. |.+.-..+.|.|++-|+
T Consensus 456 --f~----------G~~eqt~if~~m~~Al~ 474 (476)
T PRK10518 456 --VV----------GLTDQTDLFYTMKDALG 474 (476)
T ss_pred --cc----------cceeccHHHHHHHHHhC
Confidence 22 24555566666666554
No 21
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=74.85 E-value=2.5 Score=42.67 Aligned_cols=35 Identities=31% Similarity=0.654 Sum_probs=30.2
Q ss_pred ceEEEeccCcccccCC-----------CchhhHHHhhhccccceec
Q 020825 7 KALVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSL 41 (321)
Q Consensus 7 r~lvl~~dG~~~~~~~-----------~~~hl~~~as~~~cGfL~l 41 (321)
|.|||-+||++..-.+ ..+|||+||+.|.||.+--
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~ 47 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRCGLLRT 47 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCCcceee
Confidence 7899999999987644 4899999999999998754
No 22
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=66.67 E-value=4.9 Score=40.65 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=29.7
Q ss_pred ceEEEeccCcccccCC-----------CchhhHHHhhhccccceec
Q 020825 7 KALVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSL 41 (321)
Q Consensus 7 r~lvl~~dG~~~~~~~-----------~~~hl~~~as~~~cGfL~l 41 (321)
|.|||-+||++..-.+ ..+|||+||+.|.||.+--
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~Gl~~~ 47 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRVGLAKT 47 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCccccee
Confidence 6899999999987543 4899999999999998753
No 23
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=66.14 E-value=4.8 Score=40.99 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=30.1
Q ss_pred ceEEEeccCcccccCC-----------CchhhHHHhhhccccceec
Q 020825 7 KALVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSL 41 (321)
Q Consensus 7 r~lvl~~dG~~~~~~~-----------~~~hl~~~as~~~cGfL~l 41 (321)
|-|||-+||++..-.+ ..+|||+||+.|.||.+--
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~ 49 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGICGLMDP 49 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCccccee
Confidence 7899999999987654 4889999999999998753
No 24
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=63.96 E-value=31 Score=28.65 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=36.0
Q ss_pred cCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEe
Q 020825 95 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (321)
Q Consensus 95 mglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvH 167 (321)
|-+|-|+|++.+.+.|| +++|++++.+.+ + ..+.++++.| ..+++-+||++
T Consensus 2 ~~~kIaVIGD~dtv~GF-rLaGi~~~~v~~-----------~--ee~~~~i~~l--------~~~d~gII~It 52 (104)
T PRK01395 2 TMYKIGVVGDKDSILPF-KALGIDVFPVID-----------E--QEAINTLRKL--------AMEDYGIIYIT 52 (104)
T ss_pred cceeEEEEECHHHHHHH-HHcCCeeEEecC-----------h--HHHHHHHHHH--------hcCCcEEEEEc
Confidence 44689999999999888 577988866431 1 2245666655 13678999987
No 25
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=63.42 E-value=6.1 Score=40.39 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=31.6
Q ss_pred CceEEEeccCcccccCC-----------CchhhHHHhhhccccceecCCCC
Q 020825 6 SKALVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSLPIAP 45 (321)
Q Consensus 6 sr~lvl~~dG~~~~~~~-----------~~~hl~~~as~~~cGfL~l~~~~ 45 (321)
.|.|+|-+||++..--+ ..+++|+||+.|.||++-- -+|
T Consensus 4 ~killiv~DGlgDrP~~~l~gkTpLq~A~tPNmD~LA~~g~~Gl~~~-i~p 53 (408)
T COG3635 4 MKILLIVLDGLGDRPVEELDGKTPLQAAKTPNMDRLAKEGICGLMDP-IKP 53 (408)
T ss_pred ceEEEEEecCCCCCcccccCCCCchhhcCCCCHHHHHhcCCcccccc-cCC
Confidence 57899999999986322 5899999999999999864 554
No 26
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=62.66 E-value=29 Score=31.24 Aligned_cols=192 Identities=12% Similarity=0.089 Sum_probs=89.0
Q ss_pred EEEeccCccccc---C----CCchhhHHHhhhccccceecCCCC--CCChhhHHHHHHHHHHhccccccccCC--CCccc
Q 020825 9 LVLYGDGLARFV---E----PSHAHLHSLASKAACGFLSLPIAP--PSESEEERIVREFAVLIDANQDYLSGI--GEHTT 77 (321)
Q Consensus 9 lvl~~dG~~~~~---~----~~~~hl~~~as~~~cGfL~l~~~~--~~~~~~~~~~~e~aqLld~~~~~~~~~--~~~~~ 77 (321)
|+|.+|.+-+.. . +..++|++|+..|. .+.|.- ..-+ .--+.+.|-+.+...+... +.-..
T Consensus 4 v~i~~Es~~~~~~~~~~~~~~~tP~l~~l~~~g~----~f~~~~s~~~~T----~~s~~~~ltG~~~~~~~~~~~~~~~~ 75 (308)
T PF00884_consen 4 VLIVLESLRADDLSCYGYPIPTTPNLDRLAENGL----RFSNAYSSGPWT----SPSRFSMLTGLYPHNSGVYSNGPYQQ 75 (308)
T ss_dssp EEEEETT--TTSSGGGTSSSSSSHHHHHHHHTSE----EESSEE-SSSSH----HHHHHHHHHSS-HHHHT-SSSCSTTT
T ss_pred EEEEcccCCCCCCCCCCCCcccCHHHHHhhhccE----EEEEEEeccCcc----ccchhhhccccccccccccccccccc
Confidence 677888874321 1 13789999995554 333432 1122 2223555555554432100 00000
Q ss_pred cccccCCCCCCChhhhhcCCcEEEEecCchh----hhHhhhhCCe-eeecCcccccCCCC--------------CCCChH
Q 020825 78 ELKWEEKSPFQTISDRFMGLKAALITTNSRL----KSFGDKLGFA-TLQLNELIETSDSL--------------SGSPID 138 (321)
Q Consensus 78 ~~~~~~~p~~p~f~ErymglKaA~It~~~ll----kg~g~~lG~~-Vi~v~g~tg~~dt~--------------~~~~~~ 138 (321)
.......+.++..-.+. |-+-.+++....- ..+-...||+ ++..++........ .....+
T Consensus 76 ~~~~~~~~~l~~~l~~~-GY~t~~~~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 154 (308)
T PF00884_consen 76 FNLPSKFPSLPDLLKKA-GYRTSFFGPWDASFYNNQAFYPSHGFDYFLGQPGLSDRIDNPRISGPFNDVNRSNEWGYSDD 154 (308)
T ss_dssp CSSTTTS--HHHHHHHT-T-EEEEEEES-STGGGHHCHCHHTT-SEEEEESSSGGGTTSSTTEEECTTTTESTTTCEHHH
T ss_pred ccccccccccHHHHhhc-ccccceeeccccCccccccccccCCcceEEeeecccccccccccccccccccccccccccch
Confidence 22223334444444444 8899999976642 2222367886 44422211111110 011235
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEeccCCCCCC--Cccch-------------------hhhhhhHHHHHHHHHHH
Q 020825 139 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN--DDKGK-------------------AVAHDLEYINALVRVIL 197 (321)
Q Consensus 139 ~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~--h~G~~-------------------~k~~~IE~iD~lVg~il 197 (321)
....++.+.| . -.+ ++.=|+|+|.-.+-..- ...-. .-...|.++|..|+.++
T Consensus 155 ~~~~~~~~~l--~---~~~-~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~~~ 228 (308)
T PF00884_consen 155 ALFDYAIDFL--L---NED-DKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGRFI 228 (308)
T ss_dssp HHHHHHHHHH--H---CTT-TSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhh--h---hcc-cccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhhh
Confidence 5677777776 1 112 34448889977663310 00000 11137889999999999
Q ss_pred HhcCCCcccCcceEEEEEEe
Q 020825 198 QMAQPATEVGSRLHLSVVLS 217 (321)
Q Consensus 198 ~~~~~~s~~~~~~~~~lVl~ 217 (321)
+.++.. ...+..++||++
T Consensus 229 ~~l~~~--~~~d~Tiiiits 246 (308)
T PF00884_consen 229 EYLKEQ--GLYDNTIIIITS 246 (308)
T ss_dssp HHHHHT--TCGGGEEEEEEE
T ss_pred hhhhhc--CCcccceeEEec
Confidence 888332 112236667774
No 27
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=59.61 E-value=82 Score=25.77 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred CcEEEEecCchhhhHhhhhCCeeee-cCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCC
Q 020825 97 LKAALITTNSRLKSFGDKLGFATLQ-LNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 175 (321)
Q Consensus 97 lKaA~It~~~llkg~g~~lG~~Vi~-v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~ 175 (321)
||-|+|++.+.+.|| +++|++.+- ++ +. ..+.++++.| ...+++-+||++ .+
T Consensus 1 mkIaVIGD~dtv~GF-rLaGi~~~~~~~------------~~-ee~~~~l~~l-------~~~~d~gII~It---e~--- 53 (100)
T PRK02228 1 MEIAVIGSPEFTTGF-RLAGIRKVYEVP------------DD-EKLDEAVEEV-------LEDDDVGILVMH---DD--- 53 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCceEEeeC------------CH-HHHHHHHHHH-------hhCCCEEEEEEe---hh---
Confidence 789999999998887 567886432 21 21 2245555543 234778999988 32
Q ss_pred CccchhhhhhhHHHHHHHHHHHHh
Q 020825 176 DDKGKAVAHDLEYINALVRVILQM 199 (321)
Q Consensus 176 h~G~~~k~~~IE~iD~lVg~il~~ 199 (321)
..+.++..+..+++.
T Consensus 54 ---------~~~~i~e~i~~~~~~ 68 (100)
T PRK02228 54 ---------DLEKLPRRLRRTLEE 68 (100)
T ss_pred ---------HhHhhHHHHHHHHhc
Confidence 455666766665544
No 28
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=58.43 E-value=6.4 Score=39.86 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=25.8
Q ss_pred EEEeccCcccccCC-----------CchhhHHHhhhccccceec
Q 020825 9 LVLYGDGLARFVEP-----------SHAHLHSLASKAACGFLSL 41 (321)
Q Consensus 9 lvl~~dG~~~~~~~-----------~~~hl~~~as~~~cGfL~l 41 (321)
|||-+||++..-.+ ..+|||+||+.|.||.+--
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~Gl~~~ 44 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGICGLMRT 44 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCeeeeee
Confidence 46667777776533 5899999999999998753
No 29
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=56.12 E-value=62 Score=27.18 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=46.0
Q ss_pred cCCcEEEEecCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCC
Q 020825 95 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKT 174 (321)
Q Consensus 95 mglKaA~It~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a 174 (321)
|.+|-|+|-+-+.+.|| +++|.+++. -.+. ..+ .++++++-| ..+++++++|| .+
T Consensus 1 ~~~~I~VIGd~dtvtGF-rLaGv~~~~------v~~~----~~~-~~~~~~~~l--------~~~~~~iIiit---e~-- 55 (104)
T COG1436 1 MMMKIAVIGDRDTVTGF-RLAGVRVVY------VADD----EED-ELRAALRVL--------AEDDVGIILIT---ED-- 55 (104)
T ss_pred CceEEEEEEccchhhce-eeecceeEE------EecC----hhH-HHHHHHHhh--------ccCCceEEEEe---HH--
Confidence 56788999999998666 566776644 1121 222 566777655 33599999999 32
Q ss_pred CCccchhhhhhhHHHHHHHHHHH
Q 020825 175 NDDKGKAVAHDLEYINALVRVIL 197 (321)
Q Consensus 175 ~h~G~~~k~~~IE~iD~lVg~il 197 (321)
..++|...+..++
T Consensus 56 ----------~a~~i~~~i~~~~ 68 (104)
T COG1436 56 ----------LAEKIREEIRRII 68 (104)
T ss_pred ----------HHhhhHHHHHHHh
Confidence 5778888777765
No 30
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=1.4e+02 Score=31.40 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=89.4
Q ss_pred CCChhhhh--cCCcEEEEec-------CchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccc
Q 020825 87 FQTISDRF--MGLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEE 157 (321)
Q Consensus 87 ~p~f~Ery--mglKaA~It~-------~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~ 157 (321)
..++.-+| .|.|.++|.+ .+.|+.-|..++..++. .|. ..++-.+|++.++.. +
T Consensus 118 c~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg-----syt----e~dpv~ia~egv~~f--------K 180 (483)
T KOG0780|consen 118 CTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG-----SYT----EADPVKIASEGVDRF--------K 180 (483)
T ss_pred HHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe-----ccc----ccchHHHHHHHHHHH--------H
Confidence 34444444 3888888875 46778888888887744 233 358888888888755 4
Q ss_pred cCcccEEEEeccCCCCCCCccchhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEE--eccccccccCCccchhhcc
Q 020825 158 VSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVL--SYGQVLEADNSNLSVLISI 235 (321)
Q Consensus 158 ~~~~DlVfvHv~a~d~a~h~G~~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl--~yg~~~~d~~~~~~v~~~~ 235 (321)
...||+|+|-...- -+..-+.+++++. |-+...|. .+++|+ +.|++.++-...|. .+.
T Consensus 181 ke~fdvIIvDTSGR----------h~qe~sLfeEM~~-v~~ai~Pd-------~vi~VmDasiGQaae~Qa~aFk--~~v 240 (483)
T KOG0780|consen 181 KENFDVIIVDTSGR----------HKQEASLFEEMKQ-VSKAIKPD-------EIIFVMDASIGQAAEAQARAFK--ETV 240 (483)
T ss_pred hcCCcEEEEeCCCc----------hhhhHHHHHHHHH-HHhhcCCC-------eEEEEEeccccHhHHHHHHHHH--Hhh
Confidence 57899999872221 1223455666655 44566663 245555 33433222000110 111
Q ss_pred cccCcccccccCCcccccCCCCCC-----C-CCCCCccEEEEEccccceecCCCcccChHHHHh
Q 020825 236 DEKSSDLSALFPRQSYTMKGETPR-----N-DVRHHCPMLISQWQYAVTRKDMAETFSFKDFKE 293 (321)
Q Consensus 236 ~~~p~~~~~l~P~QSY~~kdh~tp-----~-h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k 293 (321)
+-+.+.+ |.-|+... - --.--+|+++++.+ .+.|+.+.|+-+.|..
T Consensus 241 dvg~vIl---------TKlDGhakGGgAlSaVaaTksPIiFIGtG---EhmdDlE~F~pk~Fvs 292 (483)
T KOG0780|consen 241 DVGAVIL---------TKLDGHAKGGGALSAVAATKSPIIFIGTG---EHMDDLEPFDPKPFVS 292 (483)
T ss_pred ccceEEE---------EecccCCCCCceeeehhhhCCCEEEEecC---ccccccCCCChHHHHH
Confidence 1111111 12222222 0 11236799997774 4999999999999987
No 31
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=49.04 E-value=84 Score=32.37 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEE
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLHLS 213 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~ 213 (321)
+......++||+.|. ...+-| |++|-=...|.++|..+ ......+..+|+.|+..++-.+.. ...++
T Consensus 234 PsL~eMt~~Al~~L~------~~~~GF-fLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~-----~dTLi 301 (419)
T smart00098 234 PSLAEMTEVAIRLLS------KNERGF-FLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKE-----DETLV 301 (419)
T ss_pred CCHHHHHHHHHHHhh------cCCCce-EEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCC-----CCcEE
Confidence 467788999999993 011112 33344455688899888 666668899999999998887531 12578
Q ss_pred EEEe
Q 020825 214 VVLS 217 (321)
Q Consensus 214 lVl~ 217 (321)
||+.
T Consensus 302 iVTA 305 (419)
T smart00098 302 IVTA 305 (419)
T ss_pred EEEe
Confidence 8884
No 32
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=48.86 E-value=27 Score=39.14 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCCcc---chhhhhhhHHHHHHHHHHHHhcCCCcccCcceEE
Q 020825 136 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDK---GKAVAHDLEYINALVRVILQMAQPATEVGSRLHL 212 (321)
Q Consensus 136 ~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h~G---~~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~ 212 (321)
-.+++++++++-| +.+++|..+=|.=.-|..||-= ..++++-++.+|++++.+++.++.. .+
T Consensus 190 VDn~v~~~if~~l--------~s~dwdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mded-------Tl 254 (895)
T KOG2126|consen 190 VDNGVIEKIFKSL--------NSKDWDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDED-------TL 254 (895)
T ss_pred cchHHHHHhhhhh--------ccCchHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhccC-------ee
Confidence 4567788888766 4578999999998898887731 2889999999999999999987642 57
Q ss_pred EEEEe
Q 020825 213 SVVLS 217 (321)
Q Consensus 213 ~lVl~ 217 (321)
.+||+
T Consensus 255 LvVmG 259 (895)
T KOG2126|consen 255 LVVMG 259 (895)
T ss_pred EEEec
Confidence 78885
No 33
>PRK10649 hypothetical protein; Provisional
Probab=47.71 E-value=3.7e+02 Score=28.59 Aligned_cols=233 Identities=12% Similarity=0.127 Sum_probs=113.0
Q ss_pred CchhhHHHhhhccccceecCC--CCCCChhhHHHHHHHHHHhccccccccCCCCccccccccCCCCCCChhhhhcCCcEE
Q 020825 23 SHAHLHSLASKAACGFLSLPI--APPSESEEERIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAA 100 (321)
Q Consensus 23 ~~~hl~~~as~~~cGfL~l~~--~~~~~~~~~~~~~e~aqLld~~~~~~~~~~~~~~~~~~~~~p~~p~f~ErymglKaA 100 (321)
--++|++++...- +.....| |+.+. |..-+..+|-..+... .......+.++.+-.+- |.+-.
T Consensus 261 TTP~Ld~l~~~~~-~~~~F~n~~S~~~~-----T~~Sl~~~LS~~~~~~--------~~~~~~~~~l~~llk~a-GY~T~ 325 (577)
T PRK10649 261 TTPELDALHKTDP-GLTVFNNVVTSRPY-----TIEILQQALTFADEKN--------PDLYLTQPSLMNMMKQA-GYKTF 325 (577)
T ss_pred CChhHHhhhccCC-CeEEeCceecCCcC-----HHHHHHHHccCCcccc--------hhhhccCCCHHHHHHHC-CCeEE
Confidence 4788999986210 1122322 33333 7777788886543311 11112245566666666 99999
Q ss_pred EEecCchh-------hhHhhhhCCeeeecCcccccCCCCCCCChHH-HHHHHHHHhccccCcccccCcccEEEEeccCCC
Q 020825 101 LITTNSRL-------KSFGDKLGFATLQLNELIETSDSLSGSPIDV-VASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 172 (321)
Q Consensus 101 ~It~~~ll-------kg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~-~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d 172 (321)
.|+|-..+ ..+++...-..+.-.+- .+ +...+|. ....+.+.|. +..+.=|++||.-+.
T Consensus 326 wisNq~~~~~~~~~~~~~~~~~d~~~f~~~~~---~~--~~~~~D~~LL~~l~~~L~-------~~~~~~fivlHl~Gs- 392 (577)
T PRK10649 326 WITNQQTMTARNTMLTVFSRQTDKQYYMNQQR---TQ--NAREYDTNVLKPFSEVLA-------DPAPKKFIIVHLLGT- 392 (577)
T ss_pred EEeCCccccccchhhhHhhhhccchhhccccc---cC--CCCCcHHHHHHHHHHHHh-------ccCCCcEEEEEecCC-
Confidence 99986652 22222211111100000 00 1123333 3333334441 112234889998754
Q ss_pred CCCCccc-----------------------hh-------hhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccc
Q 020825 173 KTNDDKG-----------------------KA-------VAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVL 222 (321)
Q Consensus 173 ~a~h~G~-----------------------~~-------k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~ 222 (321)
|.-- .+ =-..|.+.|.+|+.+++.++.. . .+ .+++.++
T Consensus 393 ---H~~Y~~RyP~~~~~F~~~~~~~~~~~~~~~~~~~~~Y~nsI~y~D~~l~~ii~~Lk~~-~--~n-t~iiy~S----- 460 (577)
T PRK10649 393 ---HIKYKYRYPENQGKFDDRTGHVPPGLNADELESYNDYDNANLYNDHVVASLIKDFKAT-D--PN-GFLVYFS----- 460 (577)
T ss_pred ---CcchhhhCCHHHhcCCCCCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcC-C--CC-eEEEEEC-----
Confidence 2210 00 1237889999999999988753 1 12 3445453
Q ss_pred cccCCccchhhcccccCcccccccCCcccccCCCCCCCCCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeH
Q 020825 223 EADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRNDVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPA 302 (321)
Q Consensus 223 ~d~~~~~~v~~~~~~~p~~~~~l~P~QSY~~kdh~tp~h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~ 302 (321)
||-+. +.. . |...+--++|..|.+..-++||+| |.+...+.-+-.++ .. --.-.+-.
T Consensus 461 --DHGe~-~~~----~--------~~~~~lG~~~~~~~~~~~~VP~ii--~~s~~~~~~~~~~~--~~----~~~~~~s~ 517 (577)
T PRK10649 461 --DHGEE-VYD----T--------PPHKTQGRNEDNPTRHMYTIPFLL--WTSEKWQAAHPRDF--SQ----DVDRKYSL 517 (577)
T ss_pred --CCCcc-ccc----C--------CcccccCCCCCCCCcccceecEEE--EECHHHHhhCchhh--hh----hhcCCeeH
Confidence 36321 100 0 111111112234444456899999 64323221110011 00 01225778
Q ss_pred HhHHHHHHHHhcCCcC
Q 020825 303 DRFLHEVAFKLWKAPK 318 (321)
Q Consensus 303 ~~~m~evafkL~kapK 318 (321)
++++|-++..+|-..+
T Consensus 518 ~Dl~~Tll~laGi~~~ 533 (577)
T PRK10649 518 AELIHTWSDLAGLSYD 533 (577)
T ss_pred HhHHHHHHHHcCCCCC
Confidence 9999999998876533
No 34
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.24 E-value=1e+02 Score=31.17 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCCCCChhhhhcCC-cEEEEecCc--------hhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCc
Q 020825 84 KSPFQTISDRFMGL-KAALITTNS--------RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGK 154 (321)
Q Consensus 84 ~p~~p~f~Erymgl-KaA~It~~~--------llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~ 154 (321)
..++-++.-+|+.- +-.+|++.+ .|+--|+.+|.+||.-+ .| +|..+++-.+++.-
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G-------~DpAaVafDAi~~A------ 217 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EG-------ADPAAVAFDAIQAA------ 217 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC--CC-------CCcHHHHHHHHHHH------
Confidence 34566677777422 234555544 55666999999998853 12 36677777777654
Q ss_pred ccccCcccEEEEe
Q 020825 155 MEEVSQFDLVLVH 167 (321)
Q Consensus 155 ~~~~~~~DlVfvH 167 (321)
+...+|+|++-
T Consensus 218 --kar~~DvvliD 228 (340)
T COG0552 218 --KARGIDVVLID 228 (340)
T ss_pred --HHcCCCEEEEe
Confidence 45789999875
No 35
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=40.80 E-value=84 Score=32.45 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEeccCCCCCCC-ccc--hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTND-DKG--KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~d~a~h-~G~--~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
.+.+..+..+++ |. ..+..+.||..+=++.+|.++| -|- .+..+++..+|.+++.+++.++.
T Consensus 155 ~~~~~~~~~i~~-~~-----~~~~e~p~l~~~Y~~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~ 219 (418)
T KOG2645|consen 155 VPLEERADTVLD-LD-----LPEKERPDLLLLYVEEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKD 219 (418)
T ss_pred ccHHHHHHHHhc-cc-----cccccCCCceEEeccCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777788887 42 2345788999999999999999 344 33677999999999999877654
No 36
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=40.49 E-value=1.2e+02 Score=32.05 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHhccccCcccccCcccEEEEeccC--CCCCCCccc-hhhhhhhHHHHHHHHHHHHhcCCCcccCcceE
Q 020825 135 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKG-KAVAHDLEYINALVRVILQMAQPATEVGSRLH 211 (321)
Q Consensus 135 ~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a--~d~a~h~G~-~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~ 211 (321)
+......++||++|. ++-+=-||=||+ .|.++|+.+ -.-...++.+|+.|+..++-++.. + ..
T Consensus 280 PsLaeMt~kAi~~L~---------kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~---~--~T 345 (482)
T COG1785 280 PSLAEMTEKAIDLLS---------KNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKD---G--NT 345 (482)
T ss_pred CcHHHHHHHHHHHhc---------cCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcC---C--Ce
Confidence 466778999999993 333544566664 578899888 555558999999999998887663 1 15
Q ss_pred EEEEEe
Q 020825 212 LSVVLS 217 (321)
Q Consensus 212 ~~lVl~ 217 (321)
++||+.
T Consensus 346 LVIvTA 351 (482)
T COG1785 346 LVIVTA 351 (482)
T ss_pred EEEEec
Confidence 777774
No 37
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=38.63 E-value=31 Score=28.86 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccccccccCCCCccccccccCCCCCCChhhhhcCCcEEEEecCchhhhHhhhhCCeeeecCcc
Q 020825 53 RIVREFAVLIDANQDYLSGIGEHTTELKWEEKSPFQTISDRFMGLKAALITTNSRLKSFGDKLGFATLQLNEL 125 (321)
Q Consensus 53 ~~~~e~aqLld~~~~~~~~~~~~~~~~~~~~~p~~p~f~ErymglKaA~It~~~llkg~g~~lG~~Vi~v~g~ 125 (321)
-|+.||..|+.-+.... . .... ..-..-..+| +..++|+|+.+|+.|-++.-.
T Consensus 13 mTg~ell~L~~~~~~~~---~------~~~~-~~~~~~~~~y----------vyG~~GlAklfgcSv~Ta~Ri 65 (96)
T PF12964_consen 13 MTGEELLFLLKEGKTNS---E------KQTS-QKAKKDEKKY----------VYGLKGLAKLFGCSVPTANRI 65 (96)
T ss_pred hhHHHHHHHHHHHhcCC---C------ccCC-ccccCcccce----------eehHHHHHHHhCCCchhHHHH
Confidence 37889999998764421 0 0000 1134456678 788899999999999655443
No 38
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=37.48 E-value=99 Score=31.35 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=30.3
Q ss_pred CcccEEEEeccCCCCCCCc---cchhhhhhhHHHHHHHHHHHHh
Q 020825 159 SQFDLVLVHIGAGEKTNDD---KGKAVAHDLEYINALVRVILQM 199 (321)
Q Consensus 159 ~~~DlVfvHv~a~d~a~h~---G~~~k~~~IE~iD~lVg~il~~ 199 (321)
...||+++ ...|..+|. ++.+-..+++++|+.|+.+++.
T Consensus 187 ~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~ 228 (408)
T TIGR02335 187 ERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ 228 (408)
T ss_pred cCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 46798876 478888775 2367777999999999999763
No 39
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=34.89 E-value=1.1e+02 Score=25.14 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=34.0
Q ss_pred CcEEEEecCchhhhHhhhhCCe-eeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEe
Q 020825 97 LKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (321)
Q Consensus 97 lKaA~It~~~llkg~g~~lG~~-Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvH 167 (321)
||-|+|++.+.+.|| +++|++ ++.++ +. ..++++++.| .+.+++-+||++
T Consensus 1 mkIaVIgD~dtv~GF-rLaGi~~~~~v~------------~~-ee~~~~l~~l-------~~~~d~gII~it 51 (100)
T PRK03957 1 MKIAVVGDRDTVTGF-RLAGLTEVYEVK------------NP-EEAKNAIKEL-------VENDEIGIIIIT 51 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCCceEEeC------------CH-HHHHHHHHHH-------hhCCCeEEEEEc
Confidence 689999999999888 567884 44322 11 3455666644 334778999887
No 40
>PRK13759 arylsulfatase; Provisional
Probab=34.50 E-value=1.3e+02 Score=30.69 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHhcCCCcccCcceEEEEEEe
Q 020825 185 DLEYINALVRVILQMAQPATEVGSRLHLSVVLS 217 (321)
Q Consensus 185 ~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~ 217 (321)
.|+++|..||.|++.++... ..++ .++|+++
T Consensus 273 ~i~~~D~~iG~l~~~l~~~g-~~dn-Tiiv~ts 303 (485)
T PRK13759 273 LITHIDHQIGRFLQALKEFG-LLDN-TIILFVS 303 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CccC-eEEEEEC
Confidence 78899999999998886531 1222 4566664
No 41
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=32.10 E-value=1.2e+02 Score=25.19 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=36.5
Q ss_pred cCCcEEEEecCchhhhHhhhhCCe-eeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEe
Q 020825 95 MGLKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 167 (321)
Q Consensus 95 mglKaA~It~~~llkg~g~~lG~~-Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvH 167 (321)
|--|.|+|=+.+.+.|| +++|++ |+.+. +. ..++++++.| ..++|=+||++
T Consensus 1 m~~kIaVvGd~DtilGF-rlaGi~~v~~~~------------~~-e~~~~~~~~l--------~~~~~gII~iT 52 (104)
T PRK01189 1 MMSCITVIGERDVVLGF-RLLGIGDTIEAE------------GK-DLVKKFLEIF--------NNPKCKYIFVS 52 (104)
T ss_pred CCceEEEEcCHHHHHHH-HHcCCceEEEcC------------CH-HHHHHHHHHH--------hcCCeEEEEEE
Confidence 34479999999999888 567995 86533 22 2346777766 34778999998
No 42
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=29.39 E-value=97 Score=34.27 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=38.3
Q ss_pred CcccEEEEeccCCCCCCCccc---hhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEe
Q 020825 159 SQFDLVLVHIGAGEKTNDDKG---KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLS 217 (321)
Q Consensus 159 ~~~DlVfvHv~a~d~a~h~G~---~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~ 217 (321)
++.|+.++|+-+.|.-||-+. .-.-..+..+|.+|++|-+.++.. +... ..+++|++
T Consensus 190 ~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~-~s~d-~tllil~g 249 (760)
T KOG2125|consen 190 SDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEH-RSGD-QTLLILCG 249 (760)
T ss_pred cchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhc-CCCC-ceEEEEEc
Confidence 568999999998887777544 233347889999999997754432 1122 24566663
No 43
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=27.72 E-value=1.3e+02 Score=27.28 Aligned_cols=57 Identities=30% Similarity=0.411 Sum_probs=37.1
Q ss_pred CCcEEEEec-------CchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEec
Q 020825 96 GLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 168 (321)
Q Consensus 96 glKaA~It~-------~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv 168 (321)
|.|-++||. .+.++.+|+.+|..++...-. .+....+.++++.+ +.+.+|+|||=.
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~---------~~~~~~~~~~l~~~--------~~~~~D~vlIDT 91 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTE---------SDPAEIAREALEKF--------RKKGYDLVLIDT 91 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTT---------SCHHHHHHHHHHHH--------HHTTSSEEEEEE
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcc---------hhhHHHHHHHHHHH--------hhcCCCEEEEec
Confidence 667777763 567899999999998663311 24556677777655 225699999874
Q ss_pred c
Q 020825 169 G 169 (321)
Q Consensus 169 ~ 169 (321)
.
T Consensus 92 ~ 92 (196)
T PF00448_consen 92 A 92 (196)
T ss_dssp -
T ss_pred C
Confidence 3
No 44
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.62 E-value=97 Score=25.99 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=32.6
Q ss_pred cCchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEeccCC
Q 020825 104 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (321)
Q Consensus 104 ~~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~ 171 (321)
|...++..-+..|++|.... ... .+.+.+.+++.+++ +++|+|+.- +++
T Consensus 20 n~~~l~~~l~~~G~~v~~~~-~v~-------Dd~~~i~~~i~~~~----------~~~Dlvitt-GG~ 68 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAG-VVP-------DDADSIRAALIEAS----------READLVLTT-GGT 68 (133)
T ss_pred hHHHHHHHHHHCCCEEEEee-ecC-------CCHHHHHHHHHHHH----------hcCCEEEEC-CCC
Confidence 34466788888999885533 222 27777777777777 568999665 444
No 45
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=25.37 E-value=53 Score=33.05 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=37.3
Q ss_pred cCcccEEEEeccCCCCCCCccc---hhhhhhhHHHHHHHHHHHHhcCC
Q 020825 158 VSQFDLVLVHIGAGEKTNDDKG---KAVAHDLEYINALVRVILQMAQP 202 (321)
Q Consensus 158 ~~~~DlVfvHv~a~d~a~h~G~---~~k~~~IE~iD~lVg~il~~~~~ 202 (321)
..++|++++|+...|..+|.=. ++....++.+|.+++.+++..+.
T Consensus 215 ~~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~ 262 (450)
T COG1524 215 RADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKK 262 (450)
T ss_pred ccCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHh
Confidence 3489999999999999988522 67777999999999999877654
No 46
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.18 E-value=7.2e+02 Score=25.28 Aligned_cols=26 Identities=4% Similarity=-0.276 Sum_probs=20.0
Q ss_pred CccEEEEEccccceec-CCCcccChHHHHh
Q 020825 265 HCPMLISQWQYAVTRK-DMAETFSFKDFKE 293 (321)
Q Consensus 265 pvP~li~~~~~~~tR~-D~v~~Fse~ef~k 293 (321)
..|+.....++ |+ |+.+.|+-+.|.+
T Consensus 339 ~~Pi~yit~Gq---~vPeDl~~~~~~~~~~ 365 (388)
T PRK12723 339 RKEVSYVTDGQ---IVPHNISIAEPLTFIK 365 (388)
T ss_pred CCCEEEEeCCC---CChhhhhhCCHHHHHH
Confidence 45887766643 55 9999999999988
No 47
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.60 E-value=3.5e+02 Score=28.44 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred hhhhhcCCcEEEEec-------CchhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCccc
Q 020825 90 ISDRFMGLKAALITT-------NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD 162 (321)
Q Consensus 90 f~ErymglKaA~It~-------~~llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~D 162 (321)
+--++ |.|..+|++ .+.|+.+|..+|.+|+.. +. ..+.-.+|+++++.. +...||
T Consensus 123 ~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~--------~~~Pv~Iak~al~~a--------k~~~~D 184 (451)
T COG0541 123 YLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-GT--------EKDPVEIAKAALEKA--------KEEGYD 184 (451)
T ss_pred HHHHc-CCceEEEecccCChHHHHHHHHHHHHcCCceecC-CC--------CCCHHHHHHHHHHHH--------HHcCCC
Confidence 33446 899988864 577899999999999663 11 236777999999877 346689
Q ss_pred EEEEeccCCCCCCCccchhhhhhhHHHHHHHHHHHHhcCCCcccCcceEEEEEE--eccccccccCCccchhhcccccCc
Q 020825 163 LVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVL--SYGQVLEADNSNLSVLISIDEKSS 240 (321)
Q Consensus 163 lVfvHv~a~d~a~h~G~~~k~~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl--~yg~~~~d~~~~~~v~~~~~~~p~ 240 (321)
+|+|- +||-... +=+-+|++.. |-+.++|. + +.+|+ ..|+...+ +-+
T Consensus 185 vvIvD-----TAGRl~i-----de~Lm~El~~-Ik~~~~P~-E------~llVvDam~GQdA~~------~A~------- 233 (451)
T COG0541 185 VVIVD-----TAGRLHI-----DEELMDELKE-IKEVINPD-E------TLLVVDAMIGQDAVN------TAK------- 233 (451)
T ss_pred EEEEe-----CCCcccc-----cHHHHHHHHH-HHhhcCCC-e------EEEEEecccchHHHH------HHH-------
Confidence 99886 2333211 2234555433 44455553 2 22332 12332111 111
Q ss_pred ccccccCCcc--cccCCCCCCCC----CC--CCccEEEEEccccceecCCCcccChHHHHhccCCcceeHH
Q 020825 241 DLSALFPRQS--YTMKGETPRND----VR--HHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPAD 303 (321)
Q Consensus 241 ~~~~l~P~QS--Y~~kdh~tp~h----~r--dpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~ 303 (321)
.|+-.-|.-+ -|.-|+.++-. ++ -.+|+-+++.+ -+.|+.+.|.-+-|+. ||+|.
T Consensus 234 aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtG---Eki~dLE~F~P~R~as-----RILGM 296 (451)
T COG0541 234 AFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTG---EKIDDLEPFHPDRFAS-----RILGM 296 (451)
T ss_pred HHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecC---CCcccCCCcChHHHHH-----HhcCc
Confidence 1111111111 13445555511 11 25699997775 4889999999999888 66653
No 48
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=21.60 E-value=2.5e+02 Score=24.75 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=28.2
Q ss_pred hhhhHhhhhCCeeeecCcccccCCCCCCCChHHHHHHHHHHhccccCcccccCcccEEEEeccCC
Q 020825 107 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 171 (321)
Q Consensus 107 llkg~g~~lG~~Vi~v~g~tg~~dt~~~~~~~~~a~~al~lLg~~eg~~~~~~~~DlVfvHv~a~ 171 (321)
.++..-+.+|++|..+. ... | +.+.+.+.+-+++ +...+|+|+.= +++
T Consensus 26 ~l~~~L~~~G~~v~~~~-iv~--D-----d~~~i~~~l~~~~--------~~~~~DlVItt-GGt 73 (163)
T TIGR02667 26 YLVERLTEAGHRLADRA-IVK--D-----DIYQIRAQVSAWI--------ADPDVQVILIT-GGT 73 (163)
T ss_pred HHHHHHHHCCCeEEEEE-EcC--C-----CHHHHHHHHHHHH--------hcCCCCEEEEC-CCc
Confidence 55667778898885532 222 2 6666655555543 11468999654 544
No 49
>PRK14974 cell division protein FtsY; Provisional
Probab=21.23 E-value=8.2e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=20.3
Q ss_pred CccEEEEEccccceecCCCcccChHHHHh
Q 020825 265 HCPMLISQWQYAVTRKDMAETFSFKDFKE 293 (321)
Q Consensus 265 pvP~li~~~~~~~tR~D~v~~Fse~ef~k 293 (321)
..|+.....++ +.|+.+.|+-+.|.+
T Consensus 306 ~~Pi~~i~~Gq---~v~Dl~~~~~~~~v~ 331 (336)
T PRK14974 306 GKPILFLGVGQ---GYDDLIPFDPDWFVD 331 (336)
T ss_pred CcCEEEEeCCC---ChhhcccCCHHHHHH
Confidence 56988877644 669999999888776
No 50
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=20.76 E-value=5.9e+02 Score=27.08 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccCcccccccCCcccccCCCCCCC---
Q 020825 184 HDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETPRN--- 260 (321)
Q Consensus 184 ~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p~~~~~l~P~QSY~~kdh~tp~--- 260 (321)
..|.++|..|+.+++.++.... ..+ .+++.+| ||-+. . .|- ....|..|-
T Consensus 422 nsI~ytD~~lg~ii~~Lk~~~~-~~n-T~iIy~S-------DHGe~-l----ge~-------------g~~~hg~~y~~a 474 (545)
T PRK11598 422 NTILYVDYIVDKAINLLKQHQD-KFN-TSLVYLS-------DHGES-L----GEN-------------GIYLHGLPYAIA 474 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-cCC-eEEEEEC-------cCCCc-c----ccC-------------CcccCCCccccC
Confidence 3789999999999988765311 111 3445554 35421 1 000 011333331
Q ss_pred -CCCCCccEEEEEccccceecCCCcccChHHHHhccCCcceeHHhHHHHHHHHhcCC
Q 020825 261 -DVRHHCPMLISQWQYAVTRKDMAETFSFKDFKEHGGYLTIPADRFLHEVAFKLWKA 316 (321)
Q Consensus 261 -h~rdpvP~li~~~~~~~tR~D~v~~Fse~ef~k~Gg~g~I~~~~~m~evafkL~ka 316 (321)
+..-++||+| |-+...+.... -+..-..++--...+--+++.|-++..+|-.
T Consensus 475 P~~~~~VPlii--w~s~~~~~~~~--~~~~~l~~~~~~~~~s~ddl~~TlL~l~gI~ 527 (545)
T PRK11598 475 PDQQTHVPMLL--WLSPDYQKRYG--VDQQCLQKQAQTQDYSQDNLFSTLLGLTGVQ 527 (545)
T ss_pred ccccccccEEE--EECcchhcccc--chhhhhhhhccCCceeHHhHHHHHHHHhCCC
Confidence 3356889999 53322111100 0100001111233577899999999987653
No 51
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=20.45 E-value=4.5e+02 Score=28.10 Aligned_cols=98 Identities=11% Similarity=0.224 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCcccCcceEEEEEEeccccccccCCccchhhcccccCcccccccCCcccccCCCCC--CCC
Q 020825 184 HDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMKGETP--RND 261 (321)
Q Consensus 184 ~~IE~iD~lVg~il~~~~~~s~~~~~~~~~lVl~yg~~~~d~~~~~~v~~~~~~~p~~~~~l~P~QSY~~kdh~t--p~h 261 (321)
..|.++|..||.|++.++.. + .+++.+| ||-+. + .+. . | ..+++. ..+
T Consensus 436 nsI~ytD~~lg~ii~~Lk~~-----n-TivIy~S-------DHGe~-l----ge~-------~----~-lhg~~~~~~~~ 485 (558)
T PRK11560 436 NSVLYVDHFISSVIDQLRDK-----K-AIVFYAA-------DHGES-I----NER-------E----H-LHGTPREMAPP 485 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----C-eEEEEEc-------CCCCc-C----CCC-------c----c-cCCCCcccCCc
Confidence 37899999999999888641 1 3445554 35421 0 000 0 0 111111 012
Q ss_pred CCCCccEEEEEcccccee--cCCCcccChHHHHhccC--CcceeHHhHHHHHHHHhcCC
Q 020825 262 VRHHCPMLISQWQYAVTR--KDMAETFSFKDFKEHGG--YLTIPADRFLHEVAFKLWKA 316 (321)
Q Consensus 262 ~rdpvP~li~~~~~~~tR--~D~v~~Fse~ef~k~Gg--~g~I~~~~~m~evafkL~ka 316 (321)
..-++|+++ |.+..-+ .+... +. ++.+.|. ...+-.+++.|-++..+|-.
T Consensus 486 ~~~~VPliv--~~s~~~~~~p~~~~--~~-~~l~~~~~~~~~~s~~dlf~TlL~~~gv~ 539 (558)
T PRK11560 486 EQFRVPMMV--WMSDKYLANPDNAQ--AF-AQLKKQADMKVPRRHVELFDTILGCLGYT 539 (558)
T ss_pred cCeeeCEEE--EEccccccCCccch--hH-HHhccccccCCceeehhHHHHHHHHcCCC
Confidence 345789999 5432211 11101 11 1223233 45688899999999987744
Done!