Query 020827
Match_columns 321
No_of_seqs 178 out of 750
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00262 Calreticulin: Calreti 100.0 8E-117 2E-121 858.3 15.0 301 19-321 1-356 (367)
2 KOG0674 Calreticulin [Posttran 100.0 3E-114 6E-119 816.3 22.3 312 6-321 8-322 (406)
3 KOG0675 Calnexin [Posttranslat 100.0 3E-102 8E-107 768.5 22.2 298 21-321 43-403 (558)
4 PF00262 Calreticulin: Calreti 99.9 1.7E-25 3.7E-30 218.7 0.9 99 190-288 224-338 (367)
5 KOG0674 Calreticulin [Posttran 99.9 1.6E-22 3.6E-27 192.6 12.4 260 2-301 1-288 (406)
6 KOG0675 Calnexin [Posttranslat 99.9 2.2E-22 4.7E-27 201.0 11.9 103 188-290 268-387 (558)
7 PF11025 GP40: Glycoprotein GP 74.3 10 0.00023 33.4 6.2 71 100-191 5-75 (165)
8 PF06439 DUF1080: Domain of Un 53.0 1.5E+02 0.0031 25.4 12.0 140 23-192 4-153 (185)
9 PF07210 DUF1416: Protein of u 37.3 42 0.00092 27.1 3.3 28 86-114 5-32 (85)
10 PF07691 PA14: PA14 domain; I 25.1 62 0.0013 26.5 2.5 28 166-193 58-85 (145)
11 PF15240 Pro-rich: Proline-ric 24.6 42 0.00091 30.7 1.5 16 2-17 1-16 (179)
12 PF09178 DUF1945: Domain of un 23.5 92 0.002 22.6 2.7 31 160-193 6-41 (51)
13 PF10262 Rdx: Rdx family; Int 23.4 88 0.0019 23.9 2.9 22 170-191 35-56 (76)
14 PF02973 Sialidase: Sialidase, 22.5 3.1E+02 0.0068 25.2 6.7 106 71-193 18-132 (190)
15 PF07436 Curto_V3: Curtovirus 22.3 45 0.00098 26.6 1.1 29 4-32 7-35 (87)
16 PLN03148 Blue copper-like prot 20.2 2.3E+02 0.005 25.6 5.2 51 95-146 66-117 (167)
No 1
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=8.3e-117 Score=858.33 Aligned_cols=301 Identities=52% Similarity=1.018 Sum_probs=225.7
Q ss_pred eeEEecCCCC--cCCCeEecccccCC---CCCccEEEeccccC-CCCCCcceeeccccchhhhhccCCC-ccCCCCceEE
Q 020827 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (321)
Q Consensus 19 v~F~E~Fd~~--~~~rWi~S~~~k~~---~~~G~w~~~~g~~~-~~~~D~GLv~~~~ak~yaIs~kl~~-~~~~~k~LVv 91 (321)
|||+|+|+++ |.+|||+|++++++ .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999986 99999999999874 67899999999666 5567999999999999999999998 9999999999
Q ss_pred EEEEeeecccccCCceEEEcccccccc-cccCCCCeeEEecccccCCCCceEEEEEEeCCC-------ccccccCCcccc
Q 020827 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET 163 (321)
Q Consensus 92 QYeVK~q~~i~CGGaYIKLl~~~~d~~-~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~-------~~~~~~~~~~~~ 163 (321)
|||||||++|+|||||||||+...++. +|+++|||+||||||+|| .+++|||||||++. +|..++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988887 999999999999999999 67789999988752 344456667889
Q ss_pred ccccceEEEEeCCCCceEEEECceEeccCCccccCC--CCCCcccccCCCCCCCCCCCCccccCCCCCCCCCCC------
Q 020827 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (321)
Q Consensus 164 d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~KP~dWd------ 235 (321)
|++||||||||||||||||+|||+++.+|||.+||+ ++||++|+||+++||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCcccccCcCCCCC
Q 020827 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (321)
Q Consensus 236 --------------d~~~~I~dP~~~kP~dwd~~~~g~W~~p~i~NP------------------~ykG~W~~~~I~NP~ 283 (321)
+||++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 679999999999999999999999999999999 999999999999999
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCcCCceEEEEEeeeC
Q 020827 284 YKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV 321 (321)
Q Consensus 284 y~g~W~p~~i~np~~y~~d~~~~~~~~i~~vg~ElW~v 321 (321)
|+|+|+||+|+||+ |++|.+|+++.+|||||||||||
T Consensus 320 YkG~W~p~~I~NP~-y~~d~~p~~~~~i~~ig~ElW~~ 356 (367)
T PF00262_consen 320 YKGEWKPRKIPNPD-YFEDPNPYNFEPIGAIGFELWQM 356 (367)
T ss_dssp ---S----EEE-TT---SSTTTT--S-EEEEEEEEEES
T ss_pred ccccccccccCCCc-ccCCCCccccCceeEEEEEEEec
Confidence 99999999999999 99999999999999999999997
No 2
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-114 Score=816.32 Aligned_cols=312 Identities=55% Similarity=1.099 Sum_probs=301.2
Q ss_pred HHHHHHhhhcceeeeEEecCC--CCcCCCeEecccccCCCCCccEEEeccccCCCCC-CcceeeccccchhhhhccCCCc
Q 020827 6 LVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEF 82 (321)
Q Consensus 6 ~~~~~~~~~~~~~v~F~E~Fd--~~~~~rWi~S~~~k~~~~~G~w~~~~g~~~~~~~-D~GLv~~~~ak~yaIs~kl~~~ 82 (321)
+++|++++++++.|||.|.|. ++|+.||++|++++. ..|.|.+++|+|+++++ |+||+|+++|||||||++|+.|
T Consensus 8 ~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~F 85 (406)
T KOG0674|consen 8 LCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPF 85 (406)
T ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccc
Confidence 344445667788999999995 459999999998753 57999999999999997 9999999999999999999999
Q ss_pred cCCCCceEEEEEEeeecccccCCceEEEcccccccccccCCCCeeEEecccccCCCCceEEEEEEeCCCccccccCCccc
Q 020827 83 SNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE 162 (321)
Q Consensus 83 ~~~~k~LVvQYeVK~q~~i~CGGaYIKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~~~~~~~~ 162 (321)
+|++|+|||||+||++|.++|||+|||||+.+.||.+|+++|||.||||||+||++|+|||+|++|+++||+|++.++|+
T Consensus 86 snK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~Ck 165 (406)
T KOG0674|consen 86 SNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRCK 165 (406)
T ss_pred cccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEeCCCCceEEEECceEeccCCccccCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 020827 163 TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIP 242 (321)
Q Consensus 163 ~d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~KP~dWdd~~~~I~ 242 (321)
+|++|||||||||||+||+|+|||+.+.+|||++||+++||+.|.||.++||+||+++++|+||+++||++|+ .|++||
T Consensus 166 ~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~pehip 244 (406)
T KOG0674|consen 166 DDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-KPEHIP 244 (406)
T ss_pred cCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-cccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 599999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCcCCceEEEEEeeeC
Q 020827 243 DPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV 321 (321)
Q Consensus 243 dP~~~kP~dwd~~~~g~W~~p~i~NP~ykG~W~~~~I~NP~y~g~W~p~~i~np~~y~~d~~~~~~~~i~~vg~ElW~v 321 (321)
||+|+||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||+ |.+++.++.+.+|++||||||||
T Consensus 245 DpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npe-y~~d~~ly~~~ni~~lgldLWQV 322 (406)
T KOG0674|consen 245 DPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPE-YPDDPELYHYENIGVLGLDLWQV 322 (406)
T ss_pred CcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCc-CCCCcceeeecccceeeeeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-102 Score=768.48 Aligned_cols=298 Identities=43% Similarity=0.845 Sum_probs=272.3
Q ss_pred EEecCCCC--cCCCeEecccccCC------CCCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-ccCCCCceEE
Q 020827 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (321)
Q Consensus 21 F~E~Fd~~--~~~rWi~S~~~k~~------~~~G~w~~~~g~~~~~~~D~GLv~~~~ak~yaIs~kl~~-~~~~~k~LVv 91 (321)
|.++|+.+ +. |||.|.++|++ .|.|+|.+++++-.+.++|+|||+++.|||||||+.|++ |+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66678765 34 89999998763 368999999988778889999999999999999999998 9999999999
Q ss_pred EEEEeeecccccCCceEEEcccc---cccccccCCCCeeEEecccccCCCCceEEEEEEeCCC------ccccccCCc--
Q 020827 92 QYSIRFEQDIECGGGYIKLLSAY---VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ------NYPIKKELE-- 160 (321)
Q Consensus 92 QYeVK~q~~i~CGGaYIKLl~~~---~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~------~~~~~~~~~-- 160 (321)
|||||||+|++|||||||||+.. ..+++|+++|||+||||||+|| .+++|||||||++. +++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 99999999999999999999983 4788999999999999999999 99999999999862 355555543
Q ss_pred --cccccccceEEEEeCCCCceEEEECceEeccCCccccCC--CCCCcccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 020827 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (321)
Q Consensus 161 --~~~d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~KP~dWdd 236 (321)
..+|++|||||||++|||||+|||||++|..|+|.+|+. .+||++|+||++.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 568999999999999999999999999999999999995 7899999999999999999999999999999999994
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCcccccC
Q 020827 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPAYKGPWRPK 277 (321)
Q Consensus 237 --------------------~~~~I~dP~~~kP~dwd~~~~g~W~-------------------~p~i~NP~ykG~W~~~ 277 (321)
||.+|+||+|+||+|||++++|+|+ ||||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 6899999999999999999877654 5677788999999999
Q ss_pred cCCCCCCCcCCCCCCCCCCCCCCCCCCCCCcCCceEEEEEeeeC
Q 020827 278 RIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV 321 (321)
Q Consensus 278 ~I~NP~y~g~W~p~~i~np~~y~~d~~~~~~~~i~~vg~ElW~v 321 (321)
||.||+|+|.|.||+|+||+ |+++.+|+.+.+|.|||||||++
T Consensus 361 mI~NP~y~G~W~PRkI~NPd-yfEd~~p~~~~pIsavglElWsM 403 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPD-YFEDDKPFTLTPISAVGLELWSM 403 (558)
T ss_pred cccCccccCccccccCCCcc-cccccCcccccchhhhhhhhhhc
Confidence 99999999999999999999 88999999999999999999985
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.90 E-value=1.7e-25 Score=218.72 Aligned_cols=99 Identities=43% Similarity=0.818 Sum_probs=48.1
Q ss_pred ccCCccccCCCCCCcccccCCCCCCCCCCC--CccccCCCCCCCCCCCC------CCCCCCCCCCCCC--------CCCC
Q 020827 190 DSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEGYDS------IPKEIPDPKAKKP--------DNWD 253 (321)
Q Consensus 190 ~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d--~~~I~Dp~~~KP~dWdd------~~~~I~dP~~~kP--------~dwd 253 (321)
....+++||+...|++|+||+++||++|++ +++|+||+|+||+|||+ ++++|+||.|..+ ..-|
T Consensus 224 p~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~N 303 (367)
T PF00262_consen 224 PNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKN 303 (367)
T ss_dssp SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-
T ss_pred ccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccC
Confidence 345567777777777777777777777776 47999999999999997 5899999988773 3346
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCcCCCCCCCcCC
Q 020827 254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKW 288 (321)
Q Consensus 254 ~~~~g~W~~p~i~NP~ykG~W~~~~I~NP~y~g~W 288 (321)
.++.|+|+||||+||+|||+|+||+|+||+|...=
T Consensus 304 p~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~ 338 (367)
T PF00262_consen 304 PNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDP 338 (367)
T ss_dssp TT--SS----EEE-TT---S----EEE-TT--SST
T ss_pred ccccCCccccccCCccccccccccccCCCcccCCC
Confidence 68999999999999999999999999999999653
No 5
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=192.65 Aligned_cols=260 Identities=28% Similarity=0.501 Sum_probs=183.2
Q ss_pred hhHHHHHHHHhhhcceeeeEEecCCCCc--CCCeEecccccCCCCCccEEEeccccCCCCCCcceeeccccchhhhhccC
Q 020827 2 MLKLLVLFLFFQISVSEIFFEERFDDGW--RSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI 79 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~~v~F~E~Fd~~~--~~rWi~S~~~k~~~~~G~w~~~~g~~~~~~~D~GLv~~~~ak~yaIs~kl 79 (321)
||..+++|+|+++ .+-+.....|.+.+ ...|. ..|.++. |.. .+.|-...+.++||+...+=
T Consensus 1 ~~~~~~~~~ll~~-v~~~sa~Vyf~E~F~d~~~w~-~rwv~sk-----hk~---------~~fG~f~ls~g~f~g~~~~D 64 (406)
T KOG0674|consen 1 MLPSFWVLCLLAL-VALASAEVYFKEEFLDEDGWE-NRWVQSK-----HKS---------RDFGKFVLSAGKFYGDEEKD 64 (406)
T ss_pred CchhHHHHHHHHH-HHHHhhhhhhhhhhcCCCCce-EEEEEee-----ccc---------cccCceEeccccccCccccc
Confidence 6678999998877 55677788999987 67887 4444322 211 13444556779999999883
Q ss_pred CCccCCCCceEEEEEEeeecccccCCceEEEcccccccccccCCCCeeEEecccccCCCCceEEEEEEeCC-Ccccc--c
Q 020827 80 PEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-QNYPI--K 156 (321)
Q Consensus 80 ~~~~~~~k~LVvQYeVK~q~~i~CGGaYIKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~-~~~~~--~ 156 (321)
+.++++..-....-+.+|..-.+-|-+.+-+++..+.| ..+|...|+.+|--|.-. .++.+ +.|.+ .
T Consensus 65 kGiqTsqd~rfya~sa~F~~FsnK~kTLv~q~tVkheQ-~~dcgggyiKl~~~d~Dq---------~~f~ges~y~iMfG 134 (406)
T KOG0674|consen 65 KGIQTSQDARFYAISAKFKPFSNKGKTLVIQFTVKHEQ-KIDCGGGYIKLFPADLDQ---------TDFHGESPYNIMFG 134 (406)
T ss_pred ccccccccceeeeeecccccccccCceEEEEEEecccc-cccCCceeEEeeecccch---------hhcCCCcccccccC
Confidence 34999998899999999998455455778889888777 568999999999877752 23333 45555 3
Q ss_pred cCCccccccccceEEEEeC-CCCceEEE--ECceEeccCCccccCCCCCC-----cccccC---CCCCCCCCCC--Cccc
Q 020827 157 KELECETDKLTHFYTFILR-PDASYSIL--IDNRERDSGSMYTDWDILPP-----RKIKAV---NAKKPADWDD--REYI 223 (321)
Q Consensus 157 ~~~~~~~d~~tHlYTLii~-~d~t~ei~--iD~~~~~~g~l~~d~~~~~p-----~~I~Dp---~~~KP~DW~d--~~~I 223 (321)
++|.-...++.|+ |+. ......|. |-++......|.+- ++.| -.|+.- +.+--.||+= .+.|
T Consensus 135 PDICG~~tkKVhv---il~ykg~nhlikK~i~Ck~D~~tHlYTl--IlRPd~TYeVkIDn~~~esGsle~DWdll~~KKi 209 (406)
T KOG0674|consen 135 PDICGFGTKKVHV---ILNYKGKNHLIKKDIRCKDDELTHLYTL--ILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKI 209 (406)
T ss_pred CcccCCCCceEEE---EEecccccchhccccccccCCcceeEEE--EecCCCeeEEEEcccccccCcccccccccccccc
Confidence 4444445666663 222 12122222 33333333333322 1111 144443 3456789996 6799
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCcccccCcCCCCCCCcCCCCCCC
Q 020827 224 DDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA----------YKGPWRPKRIKNPNYKGKWKIPYI 293 (321)
Q Consensus 224 ~Dp~~~KP~dWdd~~~~I~dP~~~kP~dwd~~~~g~W~~p~i~NP~----------ykG~W~~~~I~NP~y~g~W~p~~i 293 (321)
-||.|+||+|||+ .++|+||+.+||++|+ +|..|++|. ..|+|.||||+||.|+|+|+|++|
T Consensus 210 kdP~a~KPedWDe-r~~I~DpeD~Kp~dwe-------~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi 281 (406)
T KOG0674|consen 210 KDPDAKKPEDWDE-REYIPDPEDKKPQDWE-------KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQI 281 (406)
T ss_pred CCccccCcccchh-hccCCCccccCccccc-------cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccc
Confidence 9999999999997 9999999999999997 356787775 469999999999999999999999
Q ss_pred CCCCCCCC
Q 020827 294 DNPGIFED 301 (321)
Q Consensus 294 ~np~~y~~ 301 (321)
.||+ |++
T Consensus 282 ~np~-yKg 288 (406)
T KOG0674|consen 282 KNPA-YKG 288 (406)
T ss_pred cCcc-ccc
Confidence 9999 875
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.2e-22 Score=200.99 Aligned_cols=103 Identities=38% Similarity=0.667 Sum_probs=92.7
Q ss_pred EeccCCccccCCCCCCcccccCCCCCCCCCCCC--ccccCCCCCCCCCCCC------CCCCCCCCCCCC---------CC
Q 020827 188 ERDSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEGYDS------IPKEIPDPKAKK---------PD 250 (321)
Q Consensus 188 ~~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~--~~I~Dp~~~KP~dWdd------~~~~I~dP~~~k---------P~ 250 (321)
...++.+++|||...|.+|+|+++.||++|.+. ++|+||+|+||+|||+ |+++|.||.|++ |.
T Consensus 268 pDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~ 347 (558)
T KOG0675|consen 268 PDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPM 347 (558)
T ss_pred CCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcc
Confidence 345678999999999999999999999999985 6999999999999997 589999999963 45
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCcCCCC
Q 020827 251 NWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKI 290 (321)
Q Consensus 251 dwd~~~~g~W~~p~i~NP~ykG~W~~~~I~NP~y~g~W~p 290 (321)
.=|..+.|.|.+|||.||+|+|+|+||+|+||+|...=+|
T Consensus 348 I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p 387 (558)
T KOG0675|consen 348 INNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKP 387 (558)
T ss_pred cCCCccCCCCccccccCccccCccccccCCCcccccccCc
Confidence 5688899999999999999999999999999999987665
No 7
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=74.32 E-value=10 Score=33.36 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=44.9
Q ss_pred ccccCCceEEEcccccccccccCCCCeeEEecccccCCCCceEEEEEEeCCCccccccCCccccccccceEEEEeCCCCc
Q 020827 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179 (321)
Q Consensus 100 ~i~CGGaYIKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~~~~~~~~~d~~tHlYTLii~~d~t 179 (321)
.=+||-.||--|.+..-...+.|. .|+|...|.+-. + .+.+++.+...+. -|+ -+.++|
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~~--t----------------~PaPrYISGev~~-VtF-eksd~T 63 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKDQ--T----------------DPAPRYISGEVKS-VTF-EKSDST 63 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecC-CEEEEEccccCC--C----------------CCCCceeecceEE-EEE-eccCCe
Confidence 347999999888876555555554 489999888742 1 1222333333222 122 236899
Q ss_pred eEEEECceEecc
Q 020827 180 YSILIDNRERDS 191 (321)
Q Consensus 180 ~ei~iD~~~~~~ 191 (321)
..|+|||+....
T Consensus 64 vkIkvd~kefst 75 (165)
T PF11025_consen 64 VKIKVDGKEFST 75 (165)
T ss_pred EEEEECCeEccc
Confidence 999999986543
No 8
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=53.02 E-value=1.5e+02 Score=25.38 Aligned_cols=140 Identities=10% Similarity=0.085 Sum_probs=65.5
Q ss_pred ecCCCCcCCCeEecccccCCCCCccEEEeccccC---CCCCCcceeeccccchhhhhccCCCccCCCCceEEEEEEeeec
Q 020827 23 ERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH---GDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQ 99 (321)
Q Consensus 23 E~Fd~~~~~rWi~S~~~k~~~~~G~w~~~~g~~~---~~~~D~GLv~~~~ak~yaIs~kl~~~~~~~k~LVvQYeVK~q~ 99 (321)
.=|+..-.+.|...... ...+.|.+..|... ......|+++++ + . =+++.|+.++|+..
T Consensus 4 ~lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~~------------~-~--~~df~l~~d~k~~~ 65 (185)
T PF06439_consen 4 SLFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYTD------------K-K--FSDFELEVDFKITP 65 (185)
T ss_dssp ESS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEES------------S-E--BSSEEEEEEEEE-T
T ss_pred EeECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEEC------------C-c--cccEEEEEEEEECC
Confidence 44665556889877522 23577877777554 111122222221 1 1 15699999999833
Q ss_pred ccccCCceEEEcccccccccccCCCCeeEEecccccCCCCceEEEEEEe-CCCccc-----cccCC-ccccccccceEEE
Q 020827 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSY-QGQNYP-----IKKEL-ECETDKLTHFYTF 172 (321)
Q Consensus 100 ~i~CGGaYIKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~-~~~~~~-----~~~~~-~~~~d~~tHlYTL 172 (321)
.|.+-|-+... ..........-|++-..++.++.. ..+ .+..+. ..... .......-|=+++
T Consensus 66 ---~~~sGi~~r~~-~~~~~~~~~~gy~~~i~~~~~~~~-------~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I 134 (185)
T PF06439_consen 66 ---GGNSGIFFRAQ-SPGDGQDWNNGYEFQIDNSGGGTG-------LPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRI 134 (185)
T ss_dssp ---T-EEEEEEEES-SECCSSGGGTSEEEEEE-TTTCST-------TTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEE
T ss_pred ---CCCeEEEEEec-cccCCCCcceEEEEEEECCCCccC-------CCCccceEEEeccccccccccccCCCCceEEEEE
Confidence 22333433333 111111223447777777776400 011 112220 11111 1122234444555
Q ss_pred EeCCCCceEEEECceEeccC
Q 020827 173 ILRPDASYSILIDNRERDSG 192 (321)
Q Consensus 173 ii~~d~t~ei~iD~~~~~~g 192 (321)
+++ .+++.+.|||+.+..-
T Consensus 135 ~~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 135 VVK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EEE-TTEEEEEETTEEEEEE
T ss_pred EEE-CCEEEEEECCEEEEEE
Confidence 554 6789999999977653
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=37.33 E-value=42 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCceEEEEEEeeecccccCCceEEEcccc
Q 020827 86 NRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (321)
Q Consensus 86 ~k~LVvQYeVK~q~~i~CGGaYIKLl~~~ 114 (321)
.|-.|||=.|+ ..+--.||||+.||...
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 57799999999 77888899999999763
No 10
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.10 E-value=62 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=22.7
Q ss_pred ccceEEEEeCCCCceEEEECceEeccCC
Q 020827 166 LTHFYTFILRPDASYSILIDNRERDSGS 193 (321)
Q Consensus 166 ~tHlYTLii~~d~t~ei~iD~~~~~~g~ 193 (321)
.+-.||+.+..++.+++.|||+.+....
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEEecccEEEEECCEEEEcCC
Confidence 3456899999999999999999876543
No 11
>PF15240 Pro-rich: Proline-rich
Probab=24.61 E-value=42 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=8.8
Q ss_pred hhHHHHHHHHhhhcce
Q 020827 2 MLKLLVLFLFFQISVS 17 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (321)
|+.||+.++||+++++
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 4445555566666554
No 12
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=23.46 E-value=92 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=19.3
Q ss_pred ccccccccceEEEEeCCCCceEEEE-----CceEeccCC
Q 020827 160 ECETDKLTHFYTFILRPDASYSILI-----DNRERDSGS 193 (321)
Q Consensus 160 ~~~~d~~tHlYTLii~~d~t~ei~i-----D~~~~~~g~ 193 (321)
-|+.+++-|.|||.- ..++++| .++++.+|-
T Consensus 6 l~ke~k~l~vYrl~~---~~~SLkv~HNlSg~E~vFEGv 41 (51)
T PF09178_consen 6 LCKEEKFLHVYRLYD---DQKSLKVFHNLSGEEVVFEGV 41 (51)
T ss_dssp EEEESSEE-EEEEEE---TTEEEEEEEE-SSS-EEETTE
T ss_pred EeccceEEEEEEEeC---CCEEEEEEEecCCCEEEEEEE
Confidence 477889999999973 4444443 456666663
No 13
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=23.42 E-value=88 Score=23.85 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=16.8
Q ss_pred EEEEeCCCCceEEEECceEecc
Q 020827 170 YTFILRPDASYSILIDNRERDS 191 (321)
Q Consensus 170 YTLii~~d~t~ei~iD~~~~~~ 191 (321)
.++.....+.|||.+||+.+-+
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 3566667899999999998764
No 14
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=22.50 E-value=3.1e+02 Score=25.17 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=60.5
Q ss_pred chhhhhccCCC-ccCCCCceEEEEEEeeecccccCCceEEEcccccccccccCCCCeeEEe-cccccCCCCceEEEEEEe
Q 020827 71 RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMF-GPDICGTQKKHLHVILSY 148 (321)
Q Consensus 71 k~yaIs~kl~~-~~~~~k~LVvQYeVK~q~~i~CGGaYIKLl~~~~d~~~f~~~tpY~IMF-GPD~CG~~~~kvHfI~~~ 148 (321)
..+-++..+++ -...+-+++|-|..--..++-| ||+-+.+... ..|--|+ -+.+|| +-+|-
T Consensus 18 ~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~----n~YF~lyv~~~~~G-------~E~R~ 80 (190)
T PF02973_consen 18 QRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKG----NEYFSLYVSNNKLG-------FELRD 80 (190)
T ss_dssp CCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTT----SEEEEEEEETTEEE-------EEEEE
T ss_pred CcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCc----cceEEEEEECCEEE-------EEEec
Confidence 33566666665 3445678999997644444443 7776433321 2465555 333665 55665
Q ss_pred CC--CccccccCCcc----ccccccceEEEEeC-CCCceEEEECceEeccCC
Q 020827 149 QG--QNYPIKKELEC----ETDKLTHFYTFILR-PDASYSILIDNRERDSGS 193 (321)
Q Consensus 149 ~~--~~~~~~~~~~~----~~d~~tHlYTLii~-~d~t~ei~iD~~~~~~g~ 193 (321)
.. .+|....+... ..+...|.-++... ++..|.+++||+.+..-+
T Consensus 81 ~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~ 132 (190)
T PF02973_consen 81 TKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLS 132 (190)
T ss_dssp TTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred CCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEec
Confidence 43 34444334332 34557787777776 789999999997766543
No 15
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=22.34 E-value=45 Score=26.56 Aligned_cols=29 Identities=34% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhcceeeeEEecCCCCcCCC
Q 020827 4 KLLVLFLFFQISVSEIFFEERFDDGWRSR 32 (321)
Q Consensus 4 ~~~~~~~~~~~~~~~v~F~E~Fd~~~~~r 32 (321)
|+++++.+..+..+...|+-+|+++..+|
T Consensus 7 WlFLlFifsillQsgtNfYGTfqSgsiS~ 35 (87)
T PF07436_consen 7 WLFLLFIFSILLQSGTNFYGTFQSGSISR 35 (87)
T ss_pred HHHHHHHHHHHHhcCCceeeeeccchHHH
Confidence 56665555555567899999999885444
No 16
>PLN03148 Blue copper-like protein; Provisional
Probab=20.15 E-value=2.3e+02 Score=25.59 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=30.4
Q ss_pred EeeecccccCCc-eEEEcccccccccccCCCCeeEEecccccCCCCceEEEEE
Q 020827 95 IRFEQDIECGGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVIL 146 (321)
Q Consensus 95 VK~q~~i~CGGa-YIKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~ 146 (321)
|.-+..-.|.-+ -|.-++...+.-.++...+|...=|+..|. .--|+++.+
T Consensus 66 V~~~~Y~~C~~~~pi~~~tsG~d~v~L~~~G~~YFIcg~ghC~-~GmKl~I~V 117 (167)
T PLN03148 66 VNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICGNGQCF-NGMKVTILV 117 (167)
T ss_pred EChHHcCcccCCCCcceecCCCcEEEecCCccEEEEcCCCccc-cCCEEEEEE
Confidence 444556677743 355555444444455455677667899996 446666555
Done!