BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020829
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 84/107 (78%)
Query: 76 FYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135
FYT+ LGMKLLR + PE KY+ AF+GYGPE VIELTYN+GVDKY++GT +GH ++
Sbjct: 19 FYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALS 78
Query: 136 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182
VD+ A+ E I+ GG VTRE GPVKGG TVIAF+EDPDGYK EL+E
Sbjct: 79 VDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIE 125
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%)
Query: 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 249
L MLRVGDL RSI+FY + GM+LLR +NPEYKY++A +GYGPE + V+ELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 250 VTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 309
V Y+ G AY IA+ D+ + E I+ GG VTRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 310 FVDNVD 315
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 57/80 (71%)
Query: 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 249
+ M+RVGDLDRSI FY + GM++LRK D PE KYT+ +GYGPE + VLELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 250 VTDYDKGNAYAQIAIGTDDV 269
VT Y AY IAIG +DV
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV 88
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 75 RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 134
+FYTE LGMK+LRK D+PE+KYT FLGYGPE S V+ELTYNYGV Y +GH I
Sbjct: 24 KFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYGVTSYKHDEAYGHIAI 83
Query: 135 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181
V+DV + V ++ + E + +AF+ DPDGY ELL
Sbjct: 84 GVEDVKELVADMRKHDVPIDYED-----ESGFMAFVVDPDGYYIELL 125
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 123/277 (44%), Gaps = 47/277 (16%)
Query: 65 LIVVFPAGD----GRFYTECLGMKLLRKRDIPEE-----------KYTNAFLGYGPEDSH 109
L VF G+ RFY + LGMK+LR + E K++ +G+GPED H
Sbjct: 29 LHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDH 88
Query: 110 FVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAF 169
FV ELTYNYGV Y +G F +A ++ P+ +
Sbjct: 89 FVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEW----------PLTEVAEGVFE 138
Query: 170 IEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTI 228
E P GYKF L R P +P+ +V L V DL +S+N++ GM++ +N E K
Sbjct: 139 TEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIY---ENDEEKQR- 194
Query: 229 AMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--------DDVYKTAEAIKLFG 280
A++GY D LEL G D+ A+ +IA +D+ K E K+
Sbjct: 195 ALLGYA--DNQCKLELQGVKGGVDH--AAAFGRIAFSCPQKELPDLEDLMKR-ENQKILT 249
Query: 281 GKVTREPGPLPGINT-KITACLDPDGWKTVFVDNVDF 316
V+ + PG T ++ DPDG + FV + F
Sbjct: 250 PLVSLD---TPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 156 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 212
EP P G T + DPD + L L Q MLR+ D +S++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 213 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 252
+ LL+K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 253 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 304
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 305 GW 306
G+
Sbjct: 169 GY 170
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 30/132 (22%)
Query: 76 FYTECLGMKLLRKRDIPEEKYTNAFLGYG-----PEDSH----------FVIELTYNYGV 120
FYT LG+ LL+K D P K++ FL Y P+D +ELT+N+G
Sbjct: 48 FYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGT 107
Query: 121 DKYDIGT---------GFGHFGIAVDDVAKTVELIKAKGGKVTREP--GPVKGGNTVIAF 169
+ + + GFGH GIAV DV + + G K ++P G +KG +AF
Sbjct: 108 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 163
Query: 170 IEDPDGYKFELL 181
I+DPDGY E+L
Sbjct: 164 IQDPDGYWIEIL 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 34/145 (23%)
Query: 65 LIVVFPAGDGRFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV------------- 111
L V P FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 40 LRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALS 97
Query: 112 ----IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKVTREP- 157
+ELT+N+G + Y G GFGH GIAV DV + + G K ++P
Sbjct: 98 RKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 157
Query: 158 -GPVKGGNTVIAFIEDPDGYKFELL 181
G +KG +AFI+DPDGY E+L
Sbjct: 158 DGKMKG----LAFIQDPDGYWIEIL 178
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 151 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFY 207
G EP P GG T ++ D D + L L Q MLRV D +S++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 208 EQAFGMELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGV 250
+ GM L++K D P K+++ + Y EDKN LELT+N+G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 251 TD-----YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITA 299
D Y GN+ + I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 300 CLDPDGW 306
DPDG+
Sbjct: 167 IQDPDGY 173
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 34/145 (23%)
Query: 65 LIVVFPAGDGRFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV------------- 111
L V P FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 36 LRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALS 93
Query: 112 ----IELTYNYGVDKYDIGT---------GFGHFGIAVDDVAKTVELIKAKGGKVTREP- 157
+ELT+N+G + + + GFGH GIAV DV + + G K ++P
Sbjct: 94 RKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 153
Query: 158 -GPVKGGNTVIAFIEDPDGYKFELL 181
G +KG +AFI+DPDGY E+L
Sbjct: 154 DGKMKG----LAFIQDPDGYWIEIL 174
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 156 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 212
EP P GG T ++ D D + L L Q MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 213 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 252
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 253 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 304
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 305 GW 306
G+
Sbjct: 168 GY 169
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 34/145 (23%)
Query: 65 LIVVFPAGDGRFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV------------- 111
L V P FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 36 LRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALS 93
Query: 112 ----IELTYNYGVDKYDIGT---------GFGHFGIAVDDVAKTVELIKAKGGKVTREP- 157
+ELT+N+G + + + GFGH GIAV DV + + G K ++P
Sbjct: 94 RKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 153
Query: 158 -GPVKGGNTVIAFIEDPDGYKFELL 181
G +KG +AFI+DPDGY ++L
Sbjct: 154 DGKMKG----LAFIQDPDGYWIQIL 174
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 156 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 212
EP P GG T ++ D D + L L + MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 213 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 252
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 253 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 304
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 305 GW 306
G+
Sbjct: 168 GY 169
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 76 FYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFG 133
FY L +KLL D+P + AFL G + L+ + K+ G G H
Sbjct: 25 FYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIAKFIQKRGEGIHHIA 84
Query: 134 IAVDDVAKTVELIKAKGGK-VTREPGP-VKGGNTVIAFIEDPDGYKFELLERGPTPEPL 190
I V + + ++ +K G + + EP P +G G +E E+ E L
Sbjct: 85 IGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVLYEFCEKKEQAENL 143
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 75 RFYTECLGMKLLRKRDIP--EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYD---IGTGF 129
FYT LG L K D+P +++ P+ + ++E + + V + + G
Sbjct: 42 SFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVTPFKEALVADGI 99
Query: 130 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182
AVDD+A E + A G + T+E P G V A ++D G +L +
Sbjct: 100 PAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVVTAILDDTCGNLIQLXQ 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 76 FYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135
FY E LG ++LR+ PE+ L G ++ I + Y G H
Sbjct: 22 FYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARPSYPEALGLRHLAFK 80
Query: 136 VDDVAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKFELLE 182
V+ + + + + +G + EP V F DPDG EL E
Sbjct: 81 VEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLELHE 126
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 184 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 241
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 107 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 157
Query: 242 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 298
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 158 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 214
Query: 299 ACLDPDGWKTVFVD 312
DG V +D
Sbjct: 215 EVFARDGAHVVAID 228
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 184 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 241
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 144 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 194
Query: 242 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 298
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 195 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 251
Query: 299 ACLDPDGWKTVFVD 312
DG V +D
Sbjct: 252 EVFARDGAHVVAID 265
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 184 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 241
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 123 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 173
Query: 242 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 298
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 174 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 230
Query: 299 ACLDPDGWKTVFVD 312
DG V +D
Sbjct: 231 EVFARDGAHVVAID 244
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 184 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 241
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 115 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 165
Query: 242 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 298
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 166 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 222
Query: 299 ACLDPDGWKTVFVD 312
DG V +D
Sbjct: 223 EVFARDGAHVVAID 236
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 184 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 241
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 131 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 181
Query: 242 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 298
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 182 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 238
Query: 299 ACLDPDGWKTVFVD 312
DG V +D
Sbjct: 239 EVFARDGAHVVAID 252
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV-----DNVDFLKELE 321
+ T + +KL G T P G+NT + +D D +TV+V D V L LE
Sbjct: 210 HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD--RTVYVADRGNDRVVKLTSLE 264
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 103 YGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVEL------IKAKGGKVTRE 156
+ PE+ + E G D TGFG G +++DVA V + +KA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 203 SINFYEQAFGMELLRKRDNPEYKYT-------IAMMGYGPEDKNVVLELTYNYGVTDYDK 255
+INF + G++L++KR + +A++ PE + ++E + YG+ +
Sbjct: 103 AINFED---GVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGAN 159
Query: 256 GNAYAQIAIGTDDVY--KTAEAIKLFGGKVTREPGPLP 291
N+ QI I + V K E IK GG+ + P P
Sbjct: 160 YNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAP 197
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 155
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 158
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 159 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 206
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 207 YEQAF 211
E AF
Sbjct: 283 PEAAF 287
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 155
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 158
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 191 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 247
Query: 159 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 206
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 248 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 304
Query: 207 YEQAF 211
E AF
Sbjct: 305 PEAAF 309
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 158
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 159 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 206
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 207 YEQAF 211
E AF
Sbjct: 283 PEAAF 287
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 102 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 158
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 171 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 227
Query: 159 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 206
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 228 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 284
Query: 207 YEQAF 211
E AF
Sbjct: 285 PEAAF 289
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 199 DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMG 232
D D + +Y++ FG L + +NPE MM
Sbjct: 19 DADEASKYYQETFGWHELHREENPEQGVVEIMMA 52
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPE 223
V L V D D+S FY G E++R+ P+
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,623,218
Number of Sequences: 62578
Number of extensions: 490681
Number of successful extensions: 1022
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 54
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)