Query 020829
Match_columns 321
No_of_seqs 359 out of 2260
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1.5E-40 3.2E-45 297.1 33.7 261 61-321 22-286 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 9.2E-31 2E-35 236.1 28.0 231 61-312 2-264 (303)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.6E-30 3.4E-35 233.6 29.1 229 61-314 2-257 (294)
4 TIGR03213 23dbph12diox 2,3-dih 100.0 1.4E-29 3E-34 226.6 27.9 229 62-313 2-263 (286)
5 KOG2943 Predicted glyoxalase [ 100.0 2.7E-30 5.9E-35 211.7 19.0 246 61-321 15-278 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 2.8E-20 6.1E-25 170.9 25.2 218 63-287 2-267 (353)
7 COG2514 Predicted ring-cleavag 99.8 2.8E-19 6E-24 151.4 20.8 188 61-268 8-242 (265)
8 PLN02367 lactoylglutathione ly 99.8 9.9E-20 2.1E-24 154.0 16.2 128 188-317 74-226 (233)
9 PRK10291 glyoxalase I; Provisi 99.8 1.8E-19 3.9E-24 141.9 15.4 123 194-316 1-123 (129)
10 TIGR00068 glyox_I lactoylgluta 99.8 3.1E-19 6.8E-24 144.3 16.5 132 186-317 14-145 (150)
11 PLN03042 Lactoylglutathione ly 99.8 9.6E-19 2.1E-23 145.1 15.9 127 188-316 26-177 (185)
12 cd08342 HPPD_N_like N-terminal 99.8 1.5E-18 3.3E-23 137.9 14.9 120 190-316 1-126 (136)
13 cd07233 Glyoxalase_I Glyoxalas 99.8 3.3E-18 7.1E-23 132.7 15.6 120 190-311 1-121 (121)
14 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.6E-18 7.8E-23 136.6 15.5 122 188-313 2-141 (142)
15 PLN02367 lactoylglutathione ly 99.8 7.2E-18 1.6E-22 142.7 16.9 123 61-185 73-224 (233)
16 PRK10291 glyoxalase I; Provisi 99.8 6.9E-18 1.5E-22 132.8 15.6 122 68-189 1-126 (129)
17 PLN02300 lactoylglutathione ly 99.8 7E-18 1.5E-22 150.8 16.8 131 186-316 21-151 (286)
18 PLN02875 4-hydroxyphenylpyruva 99.8 1.4E-16 3E-21 145.7 24.4 218 64-287 1-295 (398)
19 TIGR00068 glyox_I lactoylgluta 99.8 1.7E-17 3.7E-22 134.2 16.5 125 61-185 15-143 (150)
20 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.7E-17 3.7E-22 129.2 15.5 114 189-312 2-126 (127)
21 PRK11478 putative lyase; Provi 99.8 1.6E-17 3.5E-22 130.5 15.2 121 188-313 5-129 (129)
22 TIGR03645 glyox_marine lactoyl 99.8 1.6E-17 3.5E-22 135.9 15.6 125 187-314 2-152 (162)
23 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.2E-17 2.7E-22 130.0 14.2 119 189-311 1-125 (125)
24 cd07243 2_3_CTD_C C-terminal d 99.8 2.7E-17 5.9E-22 131.8 15.4 118 187-313 4-125 (143)
25 cd08360 MhqB_like_C C-terminal 99.8 3.2E-17 6.9E-22 130.0 15.2 119 187-315 1-122 (134)
26 cd07257 THT_oxygenase_C The C- 99.8 1.6E-17 3.6E-22 134.6 13.5 119 189-314 1-126 (153)
27 PLN03042 Lactoylglutathione ly 99.8 5.9E-17 1.3E-21 134.4 16.7 122 61-184 25-175 (185)
28 cd07247 SgaA_N_like N-terminal 99.7 8.5E-17 1.8E-21 123.5 15.1 114 190-312 1-114 (114)
29 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 7.8E-17 1.7E-21 125.3 14.7 120 188-312 2-125 (125)
30 cd07265 2_3_CTD_N N-terminal d 99.7 6.5E-17 1.4E-21 125.9 14.1 116 187-314 2-120 (122)
31 TIGR03081 metmalonyl_epim meth 99.7 6.5E-17 1.4E-21 126.6 14.1 119 189-312 1-128 (128)
32 cd07233 Glyoxalase_I Glyoxalas 99.7 2.7E-16 5.9E-21 121.8 16.0 116 64-181 1-121 (121)
33 cd07256 HPCD_C_class_II C-term 99.7 2.7E-16 5.8E-21 128.6 15.4 120 187-315 1-125 (161)
34 PRK04101 fosfomycin resistance 99.7 2.6E-16 5.5E-21 125.6 14.9 116 188-314 3-120 (139)
35 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 3.5E-16 7.5E-21 125.1 14.9 118 62-183 2-141 (142)
36 cd09011 Glo_EDI_BRP_like_23 Th 99.7 2.5E-16 5.5E-21 122.2 13.7 113 189-313 2-119 (120)
37 cd07258 PpCmtC_C C-terminal do 99.7 2.8E-16 6.1E-21 125.5 14.2 115 191-317 1-118 (141)
38 cd07237 BphC1-RGP6_C_like C-te 99.7 3.3E-16 7.2E-21 127.1 14.5 121 186-314 6-132 (154)
39 cd08358 Glo_EDI_BRP_like_21 Th 99.7 6.1E-16 1.3E-20 120.4 15.2 110 63-182 2-126 (127)
40 cd08363 FosB FosB, a fosfomyci 99.7 3.2E-16 6.9E-21 123.7 13.4 114 190-314 1-116 (131)
41 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 6.9E-16 1.5E-20 119.9 15.1 117 188-312 2-124 (125)
42 cd08342 HPPD_N_like N-terminal 99.7 9E-16 2E-20 121.9 15.8 116 64-186 1-126 (136)
43 cd07243 2_3_CTD_C C-terminal d 99.7 9.9E-16 2.1E-20 122.7 15.4 114 61-183 4-125 (143)
44 cd07263 Glo_EDI_BRP_like_16 Th 99.7 5.9E-16 1.3E-20 119.2 13.5 117 192-312 1-119 (119)
45 PRK11478 putative lyase; Provi 99.7 6E-16 1.3E-20 121.5 13.8 117 61-182 4-128 (129)
46 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.6E-15 3.5E-20 118.0 15.9 115 193-312 3-121 (122)
47 cd07264 Glo_EDI_BRP_like_15 Th 99.7 1.2E-15 2.6E-20 119.0 15.0 115 190-313 1-125 (125)
48 cd07257 THT_oxygenase_C The C- 99.7 3.4E-16 7.4E-21 126.9 11.9 115 63-184 1-126 (153)
49 cd09013 BphC-JF8_N_like N-term 99.7 8E-16 1.7E-20 119.6 13.4 112 188-314 5-119 (121)
50 TIGR03645 glyox_marine lactoyl 99.7 1.1E-15 2.4E-20 125.0 14.8 122 61-185 2-153 (162)
51 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 9E-16 2E-20 116.9 13.3 113 190-310 1-114 (114)
52 cd08347 PcpA_C_like C-terminal 99.7 1.1E-15 2.4E-20 124.3 14.6 117 189-314 1-121 (157)
53 PRK06724 hypothetical protein; 99.7 9.3E-16 2E-20 120.3 13.6 112 187-314 5-124 (128)
54 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 1.1E-15 2.4E-20 118.9 14.0 115 63-181 1-125 (125)
55 cd08364 FosX FosX, a fosfomyci 99.7 1.6E-15 3.5E-20 119.6 14.9 116 188-313 3-122 (131)
56 cd07266 HPCD_N_class_II N-term 99.7 1E-15 2.2E-20 118.9 13.3 114 188-314 3-119 (121)
57 cd07265 2_3_CTD_N N-terminal d 99.7 1.2E-15 2.7E-20 118.6 13.7 112 61-184 2-120 (122)
58 cd08343 ED_TypeI_classII_C C-t 99.7 2E-15 4.3E-20 119.1 15.0 115 191-314 1-118 (131)
59 cd07239 BphC5-RK37_C_like C-te 99.7 1.4E-15 3.1E-20 121.9 14.3 115 187-315 2-119 (144)
60 PF00903 Glyoxalase: Glyoxalas 99.7 9.7E-17 2.1E-21 125.1 7.2 118 189-310 1-128 (128)
61 cd08360 MhqB_like_C C-terminal 99.7 1.7E-15 3.7E-20 120.0 14.5 113 62-184 2-121 (134)
62 cd08346 PcpA_N_like N-terminal 99.7 1.3E-15 2.8E-20 118.6 13.5 120 189-311 1-126 (126)
63 cd07249 MMCE Methylmalonyl-CoA 99.7 2.5E-15 5.4E-20 117.5 14.7 118 190-312 1-128 (128)
64 cd08351 ChaP_like ChaP, an enz 99.7 2.4E-15 5.3E-20 117.2 14.3 112 188-314 3-122 (123)
65 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 4.6E-15 9.9E-20 115.0 15.6 115 193-312 5-121 (122)
66 PRK04101 fosfomycin resistance 99.7 2.4E-15 5.3E-20 119.9 14.3 114 60-184 1-120 (139)
67 cd08361 PpCmtC_N N-terminal do 99.7 1.9E-15 4E-20 118.1 13.3 111 188-314 5-120 (124)
68 cd09014 BphC-JF8_C_like C-term 99.7 3E-15 6.6E-20 123.0 15.1 120 188-313 5-127 (166)
69 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 5.1E-15 1.1E-19 116.0 15.6 117 189-313 1-128 (128)
70 cd07252 BphC1-RGP6_N_like N-te 99.7 3.8E-15 8.3E-20 115.6 14.6 112 188-313 1-117 (120)
71 cd08359 Glo_EDI_BRP_like_22 Th 99.7 5.7E-15 1.2E-19 114.2 14.9 112 192-312 4-119 (119)
72 cd07255 Glo_EDI_BRP_like_12 Th 99.6 6.3E-15 1.4E-19 114.9 14.8 115 189-314 2-120 (125)
73 cd07237 BphC1-RGP6_C_like C-te 99.6 5.4E-15 1.2E-19 120.0 14.4 116 61-184 7-132 (154)
74 cd08352 Glo_EDI_BRP_like_1 Thi 99.6 5.9E-15 1.3E-19 114.6 14.1 116 62-182 2-125 (125)
75 cd07256 HPCD_C_class_II C-term 99.6 7.6E-15 1.6E-19 120.0 15.2 115 61-184 1-124 (161)
76 cd07240 ED_TypeI_classII_N N-t 99.6 6.6E-15 1.4E-19 113.3 14.0 110 189-313 2-114 (117)
77 TIGR03081 metmalonyl_epim meth 99.6 3.7E-15 8E-20 116.6 12.4 115 63-182 1-128 (128)
78 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 9.3E-15 2E-19 111.8 14.2 108 193-313 4-111 (112)
79 cd07235 MRD Mitomycin C resist 99.6 6.3E-15 1.4E-19 114.5 13.0 113 190-311 1-121 (122)
80 cd08348 BphC2-C3-RGP6_C_like T 99.6 2E-14 4.4E-19 113.6 16.0 119 189-315 1-122 (134)
81 cd08349 BLMA_like Bleomycin bi 99.6 1.3E-14 2.9E-19 110.6 14.2 109 194-312 3-112 (112)
82 cd08362 BphC5-RrK37_N_like N-t 99.6 9.7E-15 2.1E-19 113.0 13.4 112 188-314 2-118 (120)
83 cd07267 THT_Oxygenase_N N-term 99.6 1.2E-14 2.6E-19 111.6 13.7 109 188-313 2-110 (113)
84 cd07244 FosA FosA, a Fosfomyci 99.6 1E-14 2.2E-19 113.3 13.3 109 189-314 1-111 (121)
85 cd08345 Fosfomycin_RP Fosfomyc 99.6 8.2E-15 1.8E-19 112.2 12.5 109 192-313 1-111 (113)
86 cd09012 Glo_EDI_BRP_like_24 Th 99.6 1.2E-14 2.6E-19 113.4 13.6 113 190-312 1-123 (124)
87 cd07258 PpCmtC_C C-terminal do 99.6 1.1E-14 2.4E-19 116.2 13.6 109 65-185 1-116 (141)
88 PF12681 Glyoxalase_2: Glyoxal 99.6 3.8E-15 8.3E-20 113.0 10.5 108 195-311 1-108 (108)
89 cd08350 BLMT_like BLMT, a bleo 99.6 1.3E-14 2.9E-19 112.5 13.7 108 192-313 5-119 (120)
90 cd07261 Glo_EDI_BRP_like_11 Th 99.6 1.5E-14 3.3E-19 110.9 13.9 108 193-311 2-113 (114)
91 cd07262 Glo_EDI_BRP_like_19 Th 99.6 2.1E-14 4.6E-19 111.7 14.3 114 190-311 1-122 (123)
92 KOG0638 4-hydroxyphenylpyruvat 99.6 2.3E-15 4.9E-20 129.2 9.2 222 61-288 15-292 (381)
93 cd08354 Glo_EDI_BRP_like_13 Th 99.6 2.2E-14 4.8E-19 111.2 14.0 114 190-313 1-122 (122)
94 cd09013 BphC-JF8_N_like N-term 99.6 2.3E-14 5E-19 111.3 13.4 109 61-184 4-119 (121)
95 cd07254 Glo_EDI_BRP_like_20 Th 99.6 5.4E-14 1.2E-18 109.0 15.3 112 191-314 3-118 (120)
96 cd09014 BphC-JF8_C_like C-term 99.6 3.3E-14 7.2E-19 116.8 14.7 118 61-184 4-128 (166)
97 cd07266 HPCD_N_class_II N-term 99.6 1.7E-14 3.6E-19 112.0 12.1 110 61-183 2-118 (121)
98 cd07239 BphC5-RK37_C_like C-te 99.6 3.9E-14 8.5E-19 113.6 14.1 110 62-185 3-119 (144)
99 cd08363 FosB FosB, a fosfomyci 99.6 2.1E-14 4.6E-19 113.2 12.2 110 64-184 1-116 (131)
100 cd07247 SgaA_N_like N-terminal 99.6 5.7E-14 1.2E-18 107.7 14.1 110 64-182 1-114 (114)
101 cd08343 ED_TypeI_classII_C C-t 99.6 7.9E-14 1.7E-18 109.9 15.2 112 65-185 1-119 (131)
102 cd08361 PpCmtC_N N-terminal do 99.6 4.2E-14 9.1E-19 110.5 13.4 108 61-184 4-120 (124)
103 cd08357 Glo_EDI_BRP_like_18 Th 99.6 3.2E-14 7E-19 110.8 12.6 113 192-312 2-124 (125)
104 cd08364 FosX FosX, a fosfomyci 99.6 5.2E-14 1.1E-18 111.0 13.8 116 60-184 1-123 (131)
105 cd07252 BphC1-RGP6_N_like N-te 99.6 4.6E-14 9.9E-19 109.5 13.2 108 63-184 2-118 (120)
106 PF00903 Glyoxalase: Glyoxalas 99.6 1.3E-14 2.9E-19 113.0 10.2 116 63-180 1-128 (128)
107 cd07249 MMCE Methylmalonyl-CoA 99.6 4.6E-14 1E-18 110.2 13.2 115 64-182 1-128 (128)
108 cd08351 ChaP_like ChaP, an enz 99.6 5.5E-14 1.2E-18 109.5 13.4 109 60-183 1-121 (123)
109 cd06587 Glo_EDI_BRP_like This 99.6 5.5E-14 1.2E-18 106.1 12.8 112 192-310 1-112 (112)
110 COG3324 Predicted enzyme relat 99.6 1.2E-13 2.6E-18 105.8 14.5 120 187-314 7-126 (127)
111 cd08347 PcpA_C_like C-terminal 99.6 8.4E-14 1.8E-18 113.2 14.5 113 63-184 1-121 (157)
112 cd07240 ED_TypeI_classII_N N-t 99.6 8E-14 1.7E-18 107.2 13.7 107 62-183 1-114 (117)
113 cd07263 Glo_EDI_BRP_like_16 Th 99.6 7.1E-14 1.5E-18 107.4 13.1 113 66-182 1-119 (119)
114 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.4E-13 3E-18 107.3 14.8 113 62-185 1-121 (125)
115 cd08344 MhqB_like_N N-terminal 99.6 1.1E-13 2.3E-18 106.1 13.6 106 189-313 2-109 (112)
116 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 1.1E-13 2.4E-18 107.4 13.6 113 62-182 2-124 (125)
117 cd08346 PcpA_N_like N-terminal 99.6 1.2E-13 2.6E-18 107.5 13.7 116 63-181 1-126 (126)
118 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 2.2E-13 4.8E-18 106.7 14.6 113 63-183 1-128 (128)
119 cd09011 Glo_EDI_BRP_like_23 Th 99.5 7.9E-14 1.7E-18 108.1 12.0 110 62-183 1-119 (120)
120 PRK06724 hypothetical protein; 99.5 1.7E-13 3.6E-18 107.5 13.7 108 60-183 4-123 (128)
121 cd07245 Glo_EDI_BRP_like_9 Thi 99.5 6E-14 1.3E-18 106.8 11.0 109 64-180 1-114 (114)
122 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.3E-13 2.9E-18 105.8 12.3 104 193-312 5-113 (113)
123 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.5E-13 5.3E-18 105.0 13.4 110 193-312 2-120 (121)
124 cd08348 BphC2-C3-RGP6_C_like T 99.5 5.6E-13 1.2E-17 105.3 15.5 116 63-186 1-123 (134)
125 TIGR03211 catechol_2_3 catecho 99.5 2E-13 4.3E-18 123.2 13.9 115 188-315 3-120 (303)
126 cd07267 THT_Oxygenase_N N-term 99.5 4.3E-13 9.3E-18 102.9 13.7 106 62-184 2-111 (113)
127 cd08355 Glo_EDI_BRP_like_14 Th 99.5 1.6E-12 3.5E-17 100.9 16.4 112 66-182 2-121 (122)
128 TIGR02295 HpaD 3,4-dihydroxyph 99.5 4.4E-13 9.5E-18 120.4 14.8 115 61-184 134-257 (294)
129 cd08362 BphC5-RrK37_N_like N-t 99.5 5.6E-13 1.2E-17 103.1 13.2 109 62-184 2-118 (120)
130 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 2E-12 4.2E-17 100.1 15.9 111 67-182 5-121 (122)
131 cd08359 Glo_EDI_BRP_like_22 Th 99.5 7.4E-13 1.6E-17 102.3 12.7 107 66-182 4-119 (119)
132 KOG2944 Glyoxalase [Carbohydra 99.5 7.1E-13 1.5E-17 103.0 12.0 119 188-314 41-169 (170)
133 cd07264 Glo_EDI_BRP_like_15 Th 99.5 1.4E-12 3E-17 101.6 13.6 111 64-183 1-125 (125)
134 cd07244 FosA FosA, a Fosfomyci 99.5 9.1E-13 2E-17 102.3 12.2 105 63-184 1-111 (121)
135 TIGR03213 23dbph12diox 2,3-dih 99.5 1.6E-12 3.4E-17 116.3 14.2 114 61-183 140-263 (286)
136 PF12681 Glyoxalase_2: Glyoxal 99.4 1.7E-12 3.7E-17 98.3 12.2 104 69-181 1-108 (108)
137 cd08345 Fosfomycin_RP Fosfomyc 99.4 1.5E-12 3.3E-17 99.5 11.5 105 66-183 1-111 (113)
138 cd07238 Glo_EDI_BRP_like_5 Thi 99.4 3.3E-12 7.2E-17 97.6 13.3 105 66-183 3-111 (112)
139 cd08354 Glo_EDI_BRP_like_13 Th 99.4 3.5E-12 7.6E-17 98.7 13.2 109 64-182 1-121 (122)
140 cd07262 Glo_EDI_BRP_like_19 Th 99.4 3.9E-12 8.5E-17 98.8 13.2 110 64-181 1-122 (123)
141 PF13669 Glyoxalase_4: Glyoxal 99.4 8.5E-13 1.8E-17 100.6 9.2 95 191-287 1-97 (109)
142 cd08344 MhqB_like_N N-terminal 99.4 4.2E-12 9.2E-17 97.1 12.8 103 63-184 2-110 (112)
143 cd07254 Glo_EDI_BRP_like_20 Th 99.4 6E-12 1.3E-16 97.4 13.7 108 65-184 3-118 (120)
144 COG3185 4-hydroxyphenylpyruvat 99.4 9.9E-12 2.1E-16 109.1 16.3 220 61-288 20-275 (363)
145 cd06587 Glo_EDI_BRP_like This 99.4 5.7E-12 1.2E-16 94.9 12.8 108 66-180 1-112 (112)
146 cd08349 BLMA_like Bleomycin bi 99.4 9.6E-12 2.1E-16 94.7 13.4 105 68-182 3-112 (112)
147 KOG2943 Predicted glyoxalase [ 99.4 2.2E-12 4.8E-17 106.7 9.9 121 185-314 13-144 (299)
148 cd08357 Glo_EDI_BRP_like_18 Th 99.4 5.1E-12 1.1E-16 98.3 11.6 109 66-182 2-124 (125)
149 PF13669 Glyoxalase_4: Glyoxal 99.4 4.6E-12 9.9E-17 96.6 10.9 103 65-169 1-109 (109)
150 COG3324 Predicted enzyme relat 99.4 9.4E-12 2E-16 95.4 12.4 116 60-184 6-126 (127)
151 cd07235 MRD Mitomycin C resist 99.4 1E-11 2.2E-16 96.4 12.4 109 64-181 1-121 (122)
152 cd09012 Glo_EDI_BRP_like_24 Th 99.4 1.2E-11 2.6E-16 96.3 11.8 108 65-182 2-123 (124)
153 KOG2944 Glyoxalase [Carbohydra 99.4 9E-12 1.9E-16 96.9 10.7 116 61-183 40-168 (170)
154 cd08350 BLMT_like BLMT, a bleo 99.3 2.2E-11 4.7E-16 94.4 12.8 104 66-183 5-119 (120)
155 cd07261 Glo_EDI_BRP_like_11 Th 99.3 2E-11 4.3E-16 93.5 12.0 104 67-181 2-113 (114)
156 COG2514 Predicted ring-cleavag 99.3 3.1E-11 6.8E-16 102.8 12.9 117 186-314 7-127 (265)
157 cd08356 Glo_EDI_BRP_like_17 Th 99.3 8.8E-11 1.9E-15 90.0 11.6 100 67-182 5-113 (113)
158 cd07250 HPPD_C_like C-terminal 99.2 9.9E-11 2.1E-15 98.3 10.7 99 188-288 2-113 (191)
159 cd07251 Glo_EDI_BRP_like_10 Th 99.2 2.2E-10 4.9E-15 88.3 12.0 106 67-182 2-120 (121)
160 COG3565 Predicted dioxygenase 99.2 4.7E-10 1E-14 82.4 10.9 120 189-316 4-132 (138)
161 cd06588 PhnB_like Escherichia 99.2 1.2E-09 2.6E-14 85.7 14.0 111 194-311 4-128 (128)
162 COG3607 Predicted lactoylgluta 99.1 1.4E-09 2.9E-14 81.5 11.4 115 190-313 4-127 (133)
163 COG2764 PhnB Uncharacterized p 99.1 3.5E-09 7.5E-14 82.7 14.1 116 194-314 5-132 (136)
164 cd07250 HPPD_C_like C-terminal 99.0 2.1E-09 4.6E-14 90.2 11.0 95 62-158 2-113 (191)
165 COG0346 GloA Lactoylglutathion 99.0 1.2E-09 2.6E-14 84.8 8.3 121 189-312 2-138 (138)
166 TIGR01263 4HPPD 4-hydroxypheny 98.9 4.4E-08 9.6E-13 90.2 15.4 120 189-313 2-127 (353)
167 COG3565 Predicted dioxygenase 98.9 1.7E-08 3.6E-13 74.4 8.6 113 63-183 4-129 (138)
168 PF13468 Glyoxalase_3: Glyoxal 98.8 1.1E-07 2.5E-12 78.6 14.1 143 64-211 1-175 (175)
169 cd06588 PhnB_like Escherichia 98.7 4.5E-07 9.7E-12 71.0 14.0 106 68-180 4-127 (128)
170 PRK01037 trmD tRNA (guanine-N( 98.7 9.9E-08 2.1E-12 85.0 11.2 105 188-312 246-353 (357)
171 COG2764 PhnB Uncharacterized p 98.7 1.2E-06 2.7E-11 68.4 14.8 112 69-185 6-133 (136)
172 COG0346 GloA Lactoylglutathion 98.7 7E-08 1.5E-12 74.7 7.4 118 62-182 1-138 (138)
173 KOG0638 4-hydroxyphenylpyruvat 98.6 1.1E-07 2.5E-12 82.3 6.9 132 188-319 16-154 (381)
174 PRK10148 hypothetical protein; 98.5 5.3E-06 1.1E-10 66.5 14.8 116 194-317 6-145 (147)
175 PF14506 CppA_N: CppA N-termin 98.5 4.5E-06 9.7E-11 62.5 12.3 110 65-184 2-115 (125)
176 PF14506 CppA_N: CppA N-termin 98.2 2.9E-05 6.4E-10 58.2 11.3 114 191-316 2-117 (125)
177 COG3607 Predicted lactoylgluta 98.2 2E-05 4.4E-10 59.3 9.4 112 64-185 4-129 (133)
178 PLN02875 4-hydroxyphenylpyruva 98.1 8.4E-05 1.8E-09 68.7 14.8 122 190-315 1-153 (398)
179 PF13468 Glyoxalase_3: Glyoxal 97.9 3E-05 6.5E-10 64.1 6.3 87 190-282 1-101 (175)
180 PF14696 Glyoxalase_5: Hydroxy 97.9 0.00016 3.5E-09 56.9 9.9 118 188-316 8-129 (139)
181 PRK01037 trmD tRNA (guanine-N( 97.9 9.9E-05 2.2E-09 66.1 9.5 103 61-183 245-354 (357)
182 PRK10148 hypothetical protein; 97.8 0.0026 5.6E-08 50.9 15.8 105 75-187 18-145 (147)
183 PF14696 Glyoxalase_5: Hydroxy 97.8 0.00068 1.5E-08 53.4 12.1 115 61-186 7-129 (139)
184 COG3185 4-hydroxyphenylpyruvat 97.7 7.4E-05 1.6E-09 66.4 6.2 94 61-157 165-274 (363)
185 PF14507 CppA_C: CppA C-termin 96.2 0.016 3.5E-07 42.6 5.8 92 190-310 6-100 (101)
186 PF06983 3-dmu-9_3-mt: 3-demet 95.9 0.22 4.8E-06 38.0 11.4 96 198-311 11-116 (116)
187 PF15067 FAM124: FAM124 family 95.3 0.38 8.3E-06 40.8 11.4 124 169-310 109-235 (236)
188 PF06983 3-dmu-9_3-mt: 3-demet 94.7 0.88 1.9E-05 34.7 11.2 89 75-181 18-116 (116)
189 PF15067 FAM124: FAM124 family 90.1 2.5 5.5E-05 36.0 8.6 101 63-180 128-235 (236)
190 PF14507 CppA_C: CppA C-termin 86.8 2.7 5.8E-05 31.1 5.9 89 63-179 5-99 (101)
191 COG4747 ACT domain-containing 68.9 23 0.00049 26.9 6.1 109 139-285 17-135 (142)
192 PF13670 PepSY_2: Peptidase pr 67.6 15 0.00032 25.9 4.9 45 268-314 30-74 (83)
193 PF13670 PepSY_2: Peptidase pr 66.5 23 0.00051 24.9 5.7 45 138-184 30-74 (83)
194 PF06185 YecM: YecM protein; 53.1 96 0.0021 25.7 7.7 78 188-267 33-114 (185)
195 PF02208 Sorb: Sorbin homologo 51.5 6.1 0.00013 24.3 0.4 25 188-212 10-34 (47)
196 cd04882 ACT_Bt0572_2 C-termina 49.9 38 0.00082 21.9 4.2 26 258-283 39-64 (65)
197 PF07063 DUF1338: Domain of un 48.9 40 0.00088 30.3 5.4 30 255-284 181-216 (302)
198 cd04882 ACT_Bt0572_2 C-termina 47.2 44 0.00095 21.6 4.2 26 128-153 39-64 (65)
199 COG4747 ACT domain-containing 46.7 37 0.0008 25.9 3.9 85 131-217 44-135 (142)
200 cd04895 ACT_ACR_1 ACT domain-c 46.6 63 0.0014 22.2 4.9 40 269-308 15-55 (72)
201 PF07063 DUF1338: Domain of un 46.0 44 0.00096 30.1 5.2 30 125-154 181-216 (302)
202 cd04883 ACT_AcuB C-terminal AC 45.8 54 0.0012 21.7 4.6 29 258-286 41-71 (72)
203 cd07268 Glo_EDI_BRP_like_4 Thi 44.2 1.6E+02 0.0035 23.4 9.3 77 129-209 2-93 (149)
204 KOG4657 Uncharacterized conser 44.2 66 0.0014 27.4 5.5 33 198-233 145-177 (246)
205 PRK11700 hypothetical protein; 41.5 2.1E+02 0.0045 23.8 9.3 77 129-209 40-131 (187)
206 COG0264 Tsf Translation elonga 39.0 42 0.00091 29.9 3.8 52 267-318 32-86 (296)
207 COG3254 Uncharacterized conser 36.8 69 0.0015 23.8 4.0 37 270-318 27-63 (105)
208 PRK11700 hypothetical protein; 36.4 2.5E+02 0.0054 23.3 10.5 78 188-267 38-119 (187)
209 cd07268 Glo_EDI_BRP_like_4 Thi 33.2 2.5E+02 0.0054 22.4 10.1 76 190-267 2-81 (149)
210 COG3865 Uncharacterized protei 33.1 2.5E+02 0.0054 22.3 12.6 41 262-313 81-124 (151)
211 PRK12332 tsf elongation factor 31.9 71 0.0015 26.8 4.0 52 267-318 31-85 (198)
212 PF06185 YecM: YecM protein; 31.7 2.4E+02 0.0052 23.4 6.8 76 128-209 34-123 (185)
213 TIGR00116 tsf translation elon 30.9 67 0.0014 28.8 3.8 53 267-319 31-84 (290)
214 COG1225 Bcp Peroxiredoxin [Pos 30.7 2.3E+02 0.0049 22.9 6.5 59 258-316 64-141 (157)
215 cd04897 ACT_ACR_3 ACT domain-c 30.5 1.4E+02 0.003 20.7 4.6 41 269-309 15-56 (75)
216 PTZ00056 glutathione peroxidas 30.4 1.8E+02 0.0039 24.3 6.2 17 297-313 147-163 (199)
217 PF09142 TruB_C: tRNA Pseudour 29.7 99 0.0021 20.0 3.6 43 268-316 5-47 (56)
218 PRK09750 hypothetical protein; 29.4 32 0.00069 22.5 1.1 18 16-33 24-41 (64)
219 PF06688 DUF1187: Protein of u 27.9 30 0.00064 22.7 0.8 20 15-34 20-39 (61)
220 PRK13490 chemoreceptor glutami 26.4 1.2E+02 0.0026 24.6 4.2 41 266-308 111-151 (162)
221 PF07494 Reg_prop: Two compone 26.2 77 0.0017 16.4 2.1 14 296-309 7-20 (24)
222 COG3349 Uncharacterized conser 26.0 1E+02 0.0022 29.8 4.3 38 271-310 14-52 (485)
223 cd04904 ACT_AAAH ACT domain of 25.8 2.1E+02 0.0045 19.4 4.9 38 138-175 13-51 (74)
224 PF09066 B2-adapt-app_C: Beta2 25.5 2.8E+02 0.0061 20.5 6.8 68 137-208 36-107 (114)
225 cd04906 ACT_ThrD-I_1 First of 25.0 1.4E+02 0.003 20.9 4.0 26 130-155 42-71 (85)
226 PF03975 CheD: CheD chemotacti 24.9 1E+02 0.0023 23.2 3.5 40 267-308 64-103 (114)
227 PRK13498 chemoreceptor glutami 24.8 1.3E+02 0.0029 24.4 4.3 42 264-307 112-153 (167)
228 PRK13495 chemoreceptor glutami 24.1 1.4E+02 0.003 24.1 4.3 41 266-308 104-144 (159)
229 PRK13494 chemoreceptor glutami 23.2 1.5E+02 0.0033 24.0 4.3 41 266-308 113-153 (163)
230 COG5397 Uncharacterized conser 23.2 89 0.0019 27.6 3.1 51 262-314 161-212 (349)
231 PF12687 DUF3801: Protein of u 23.1 1.9E+02 0.0041 24.4 5.0 30 125-154 30-59 (204)
232 PF03975 CheD: CheD chemotacti 22.6 1.7E+02 0.0037 22.0 4.3 39 138-178 65-103 (114)
233 COG1437 CyaB Adenylate cyclase 22.2 4.5E+02 0.0098 21.7 14.3 135 132-282 6-161 (178)
234 PRK13493 chemoreceptor glutami 22.2 1.5E+02 0.0033 25.2 4.3 41 266-308 138-178 (213)
235 PRK13497 chemoreceptor glutami 22.1 1.6E+02 0.0035 24.4 4.3 41 266-308 111-151 (184)
236 cd04908 ACT_Bt0572_1 N-termina 22.1 1.8E+02 0.0038 19.0 3.9 23 132-154 43-65 (66)
237 PF07045 DUF1330: Protein of u 22.0 2.4E+02 0.0051 18.6 4.5 33 175-209 26-58 (65)
238 PRK13491 chemoreceptor glutami 21.1 1.7E+02 0.0038 24.5 4.3 42 266-309 114-155 (199)
239 PRK13495 chemoreceptor glutami 20.8 1.8E+02 0.004 23.4 4.3 40 137-178 105-144 (159)
240 PF13176 TPR_7: Tetratricopept 20.2 83 0.0018 17.8 1.7 18 197-214 12-29 (36)
241 COG1395 Predicted transcriptio 20.2 1E+02 0.0022 27.8 2.9 34 2-35 35-68 (313)
242 PRK13490 chemoreceptor glutami 20.1 2E+02 0.0043 23.3 4.4 39 138-178 113-151 (162)
243 PRK13488 chemoreceptor glutami 20.0 1.9E+02 0.0042 23.3 4.3 40 266-307 106-145 (157)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=1.5e-40 Score=297.07 Aligned_cols=261 Identities=89% Similarity=1.449 Sum_probs=211.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+||+|.|+|+ +||+++|||++..+...++..+..+++..++...++.+++....+......+.|+.|++|.|
T Consensus 22 i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~v 101 (286)
T PLN02300 22 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIAV 101 (286)
T ss_pred cceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEEe
Confidence 78999999999999 99999999999876555555566777776544445667775543333334456899999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHHHHHHhcCCeee
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELL 216 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~ 216 (321)
+|+++++++++++|+++..+|...++++.+++|+.|||||.|||++....+.++.|+.|.|+|++++.+||+++|||++.
T Consensus 102 ~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~ 181 (286)
T PLN02300 102 EDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLL 181 (286)
T ss_pred CCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHHhccCCEEE
Confidence 99999999999999999888776665556788999999999999999888899999999999999999999999999997
Q ss_pred cccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCce
Q 020829 217 RKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTK 296 (321)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~ 296 (321)
.....++..+...++..+.......+++..+.+......+++.+|++|.|+|+++++++++++|+++..+|...|+..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~ 261 (286)
T PLN02300 182 RKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTK 261 (286)
T ss_pred eeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceE
Confidence 65444444566666554322234567766544443344567889999999999999999999999999998888865457
Q ss_pred EEEEECCCCCEEEEEeccccccccC
Q 020829 297 ITACLDPDGWKTVFVDNVDFLKELE 321 (321)
Q Consensus 297 ~~~~~DPdG~~iEl~~~~~~~~~~~ 321 (321)
.++|+||||+.|+|++..+|.||+|
T Consensus 262 ~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 262 ITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred EEEEECCCCCEEEEEccchhhhhcC
Confidence 8999999999999999999999987
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=9.2e-31 Score=236.14 Aligned_cols=231 Identities=18% Similarity=0.177 Sum_probs=162.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
.++|+||+|.|+|+ +||+++|||++..+.. . .+++.......+..+.+.. ....|+.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~-------~~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---Q---RVYLKAWDEWDHYSVILTE-------ADTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---c---eEEEEeccccccceEeecc-------CCCCceeEEEEEe
Confidence 35899999999999 9999999999876532 1 2344432211223333322 1234789999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC---------------------CCCceE
Q 020829 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 192 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~---------------------~~~l~h 192 (321)
+ |+++++++|+++|+++...+.....+.++.+||.|||||.|||++.... ..+|+|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 6899999999999998765542222345779999999999999984421 235999
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCce-EEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC---
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD--- 268 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d--- 268 (321)
|+|.|+|++++++||+++|||++..+...+++.. ...++..+. ....+.+.. ......++|+||.|+|
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVG------DPEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceec------CCCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999865543333321 223333221 122222221 0112238899999986
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+++++++|+++|+++..+|...+...++++||+|||||.||++.
T Consensus 221 v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 221 VLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 55678899999999988876554333578999999999999983
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=1.6e-30 Score=233.63 Aligned_cols=229 Identities=22% Similarity=0.268 Sum_probs=163.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+||+|.|+|+ +||+++|||++..+.. ..+++..........+.+.. ....++.|++|.|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~-------~~~~~~~hiaf~v 68 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTK-------APSAALSYIGFRV 68 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeee-------CCCcCccEEEEEe
Confidence 56899999999999 9999999999876521 12444322212223344432 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC---------------CCCCceEEEEEeC
Q 020829 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRVG 198 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------~~~~l~hi~L~v~ 198 (321)
+ |+++++++|+++|+++...+.. +.++.+||.|||||.+||+.... .+.+++||+|.|+
T Consensus 69 ~~~~dl~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~ 145 (294)
T TIGR02295 69 SKEEDLDKAADFFQKLGHPVRLVRDG---GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVP 145 (294)
T ss_pred CCHHHHHHHHHHHHhcCCcEEeecCC---CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeC
Confidence 7 6899999999999998765432 24588999999999999997331 1346899999999
Q ss_pred ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC---HHHHHHH
Q 020829 199 DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD---VYKTAEA 275 (321)
Q Consensus 199 D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d---l~~~~~~ 275 (321)
|+++|++||+++|||++..+...+.+.....++.... ..+.+.+.. ..+++++|+||.|+| +++..++
T Consensus 146 dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~ 216 (294)
T TIGR02295 146 DVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACDI 216 (294)
T ss_pred CHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHHHHHHHH
Confidence 9999999999999999876543333332333333211 123333321 123678999999998 5567899
Q ss_pred HHHCCCe--eecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 276 IKLFGGK--VTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 276 l~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|+++|++ +..+|.....+.+.++|++||+||.||++...
T Consensus 217 l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 217 LASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9999998 65566554433346799999999999998754
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.97 E-value=1.4e-29 Score=226.61 Aligned_cols=229 Identities=17% Similarity=0.202 Sum_probs=162.8
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+||+|.|+|+ +||+++|||++..+.. + ...|+..+. .+..+.+... ...++.|++|.|+
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~V~ 67 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDS--RAHRIAVHPG-------ESDDLAYAGWEVA 67 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCC--CceEEEEEEC-------CcCCeeeEeeeeC
Confidence 4799999999999 9999999999764311 1 123555532 2333444321 1236789999999
Q ss_pred C---HHHHHHHHHHcCCeeeeCCcc--cCCCCeEEEEEECCCCcEEEEEecCC--------C----------CCCceEEE
Q 020829 138 D---VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGP--------T----------PEPLCQVM 194 (321)
Q Consensus 138 d---l~~~~~~l~~~Gv~~~~~p~~--~~~g~~~~~~~~DPdG~~iel~~~~~--------~----------~~~l~hi~ 194 (321)
| ++++.++|+++|+++...|.. ...+.++.++|.|||||.+|++.... . +.+|+||.
T Consensus 68 ~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~ 147 (286)
T TIGR03213 68 DEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHIV 147 (286)
T ss_pred CHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEEE
Confidence 8 889999999999998776532 12235678999999999999996321 0 23799999
Q ss_pred EEeCChhHHHHHHHHhcCCeeecccCC--CCC-ceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020829 195 LRVGDLDRSINFYEQAFGMELLRKRDN--PEY-KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 195 L~v~D~e~a~~FY~~vLG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~ 271 (321)
|.|+|+++|.+||+++|||++..+... +++ .+...++..++ .++.+.+.. ....++++|+||.|+|+++
T Consensus 148 l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~------~~~~~~~~Hiaf~v~d~~~ 219 (286)
T TIGR03213 148 LRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFAA------GPSEKRLNHLMLEVDTLDD 219 (286)
T ss_pred EEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEec------CCCCCceEEEEEEcCCHHH
Confidence 999999999999999999998655322 111 11234444322 233344332 1124578999999987666
Q ss_pred ---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 272 ---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 272 ---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
++++|+++|+ ....|...+.+..+++|++||+||+||+...
T Consensus 220 v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 220 VGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 8999999999 5556665554445789999999999999864
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=211.69 Aligned_cols=246 Identities=52% Similarity=0.847 Sum_probs=204.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCC
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI 125 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~ 125 (321)
..|.-|+++.|.|. .||+++||+++..-.+.++ ++|.-.++++||+..+++++|+.+++...+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 67899999999999 9999999999998766665 67888999999999999999999999999999
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHH
Q 020829 126 GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSIN 205 (321)
Q Consensus 126 ~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~L~v~D~e~a~~ 205 (321)
|+++.|+.+.++|+-...+.++..|.+ .++..++++.||||+.++|+++.+.+.++..|.|+|.|+++|+.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~k 165 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIK 165 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHH
Confidence 999999999999988888888776542 13456789999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeec
Q 020829 206 FYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTR 285 (321)
Q Consensus 206 FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~ 285 (321)
||.+.|||++.+.. ..+..+.+++++. ...|||.++.+......+.+...+++-.+++..+.+.++..+.++..
T Consensus 166 yw~~~lgM~ileke----ek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~iK~~n~~i~~ 239 (299)
T KOG2943|consen 166 YWEKLLGMKILEKE----EKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTILT 239 (299)
T ss_pred HHHHHhCcchhhhh----hhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHHHHhcccccc
Confidence 99999999997642 2356677887654 59999999887766555555555555567899999999998877766
Q ss_pred CCccC--CCCCc-eEEEEECCCCCEEEEEeccccccccC
Q 020829 286 EPGPL--PGINT-KITACLDPDGWKTVFVDNVDFLKELE 321 (321)
Q Consensus 286 ~p~~~--~~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~ 321 (321)
+.... |++.. .++.+-||||+.|+|+...+|+++.+
T Consensus 240 ~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 240 PLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 55433 44432 56789999999999999999998753
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.88 E-value=2.8e-20 Score=170.88 Aligned_cols=218 Identities=24% Similarity=0.328 Sum_probs=146.9
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC------cCCCCCceEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hl 132 (321)
.++||.|.|+|+ +||++.|||+.........+. ..+.+..| ...+.+........ ...+.|+.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 689999999999 999999999998763322222 22334432 34566654332221 1467899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC---------------------C----C
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T----P 187 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------------~----~ 187 (321)
||.|+|+++++++++++|+++..+|.....|...+.-+..+.|..+-|+++.. . -
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGL 156 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCe
Confidence 99999999999999999999987765431112223333444555555554210 0 1
Q ss_pred CCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCC--CceEEEEeccCCCCcceEEEeeeccCC---Cc------cC
Q 020829 188 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV---TD------YD 254 (321)
Q Consensus 188 ~~l~hi~L~v~--D~e~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lel~~~~~~---~~------~~ 254 (321)
.+++||++.|+ |++++++||+++|||++........ .......+.. ......++|..+... .+ ..
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~--~~g~~~i~L~ep~~~~~~s~i~~fl~~~ 234 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS--PDGKVKIPLNEPASGKDKSQIEEFLEFY 234 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC--CCCcEEEEEeccCCCCCCCHHHHHHHHc
Confidence 24999999999 9999999999999999875543221 1121112221 122567777653211 11 12
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCC
Q 020829 255 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 255 ~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p 287 (321)
.++|+.|+||.|+|+++++++|+++|+++...|
T Consensus 235 ~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 235 NGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 468999999999999999999999999998776
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=151.43 Aligned_cols=188 Identities=22% Similarity=0.336 Sum_probs=131.0
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIA 135 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~ 135 (321)
++.+.-|+|.|+|+ .||+++||+++..+.. ..+-++.+. ...+.|.+..+. .......|+.|++|.
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~AfL 78 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAFL 78 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeeee
Confidence 56899999999999 9999999999987643 234455543 245666554332 223456799999999
Q ss_pred eCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC--------------------------
Q 020829 136 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-------------------------- 186 (321)
Q Consensus 136 v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~-------------------------- 186 (321)
+++ +..+..++...|+++.+. .++ .....+||.||+||-||++...+.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~Ga-~DH--~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~ 155 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVGA-SDH--LVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEA 155 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccccc-Ccc--hhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhc
Confidence 995 777889999999988632 233 245679999999999999987420
Q ss_pred ----------CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEee-eccCCCcc--
Q 020829 187 ----------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELT-YNYGVTDY-- 253 (321)
Q Consensus 187 ----------~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~-~~~~~~~~-- 253 (321)
...|.||.|.|.|++++.+||+++|||++..+. + ...|+..++. ++-+... +.......
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~--~----~A~F~a~G~Y--HHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG--P----SALFLASGDY--HHHLAANTWNSRGARPRN 227 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC--C----cceEEecCCc--ceeEEEeccccCCCCCCC
Confidence 235999999999999999999999999997662 2 1234444332 4444433 22221111
Q ss_pred CCCCCeeEEEEEeCC
Q 020829 254 DKGNAYAQIAIGTDD 268 (321)
Q Consensus 254 ~~~~~~~hlaf~v~d 268 (321)
....++..+.+.+++
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 233467777777765
No 8
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=9.9e-20 Score=153.99 Aligned_cols=128 Identities=32% Similarity=0.557 Sum_probs=103.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCC---------------CcceEEEeeeccCCCc
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE---------------DKNVVLELTYNYGVTD 252 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~lel~~~~~~~~ 252 (321)
-.+.|+.|+|+|+++|++||+++|||++..+...++.++.+++++.++. .....+||.++.+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 4699999999999999999999999999988888888888888864321 1145899988665432
Q ss_pred ------cCCC----CCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020829 253 ------YDKG----NAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 253 ------~~~~----~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~ 317 (321)
+..+ .|+.|+||.|+|+++++++|+++|+++..+|...++ .+.+|++|||||+|||++.+...
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 2222 489999999999999999999999999987764333 47889999999999999986543
No 9
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=1.8e-19 Score=141.89 Aligned_cols=123 Identities=51% Similarity=0.935 Sum_probs=93.9
Q ss_pred EEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHH
Q 020829 194 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 273 (321)
Q Consensus 194 ~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~ 273 (321)
.|.|+|+++|++||+++|||++......+...+.++++..++......+++....+..+...+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987665555555667776654333345566665433333344567889999999999999
Q ss_pred HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 274 EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 274 ~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
++|+++|+++..+|.+.+++..+.+||+|||||.|||++.++.
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 9999999998877666655533568899999999999998753
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=3.1e-19 Score=144.30 Aligned_cols=132 Identities=48% Similarity=0.872 Sum_probs=98.7
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020829 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 186 ~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~ 265 (321)
...+++|+.|.|+|+++|++||+++|||++..+...+...+..++++.++......+++....+..+...+.+..|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 45689999999999999999999999999876544444444455555433223445655543322222334578899999
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~ 317 (321)
|+|++++.++|.++|+++..+|...+++..+.+||+|||||.|||++...-+
T Consensus 94 v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 145 (150)
T TIGR00068 94 VDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTK 145 (150)
T ss_pred cCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchh
Confidence 9999999999999999998887655655457889999999999999976543
No 11
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=9.6e-19 Score=145.07 Aligned_cols=127 Identities=30% Similarity=0.560 Sum_probs=98.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCC---------------cceEEEeeeccCCCc
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED---------------KNVVLELTYNYGVTD 252 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~~ 252 (321)
-++.|+.|.|+|+++|++||+++|||++..+...++.++.+++++.+... ....++|.++.+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 47999999999999999999999999998887666666777777643210 235888886543221
Q ss_pred ------cC----CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 253 ------YD----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 253 ------~~----~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
+. .+.++.|++|.|+|+++++++|+++|+++...|....+ .+.+|++|||||+|||++....
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 11 12478999999999999999999999999876643222 4678999999999999997754
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=1.5e-18 Score=137.93 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=91.1
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQIA 263 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hla 263 (321)
++|+.|.|+|+++|++||+++|||++..+...++ .....+.. ....+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 6899999999999999999999999876543221 22333332 144555543222111 12446788999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
|.|+|+++++++|+++|+++..+|...+++ .+.++++||||+.|||++++.-
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999999999998875664 4899999999999999997754
No 13
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=3.3e-18 Score=132.69 Aligned_cols=120 Identities=43% Similarity=0.794 Sum_probs=91.1
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC-CccCCCCCeeEEEEEeCC
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-TDYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~-~~~~~~~~~~hlaf~v~d 268 (321)
++|+.|.|+|+++|.+||+++||+++......++..+..+++..+.......+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999876544444345556666432113456666654332 122334578899999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
+++++++++++|+++..+|... + .++.+||+|||||+|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 2 257899999999999985
No 14
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=3.6e-18 Score=136.62 Aligned_cols=122 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCc----
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTD---- 252 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~---- 252 (321)
.+++||+|.|+|+++|++||++ |||++..+...++ ....+.++... .....++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 3689999999999999999998 9998865543211 22334444422 2356777776332211
Q ss_pred ---cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 253 ---YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 253 ---~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
...+.++.|+||.|+|+++++++|+++|+++..+|...+++ .+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12245788999999999999999999999998776555443 4789999999999999985
No 15
>PLN02367 lactoylglutathione lyase
Probab=99.79 E-value=7.2e-18 Score=142.70 Aligned_cols=123 Identities=39% Similarity=0.691 Sum_probs=100.0
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCC---------------cceEEEEEeecCCC
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 121 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~ 121 (321)
.-++.|+.|.|+|+ +||+++|||++..+...+++++.++|+++++.. ....++|..+++..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 45799999999999 999999999999998888888999999754311 13478998766543
Q ss_pred C------cCCC----CCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 122 K------YDIG----TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 122 ~------~~~~----~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
. +..+ .|+.|+||.|+|+++++++|+++|+++...|.... ..+++|++|||||.|||++...
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEeccc
Confidence 1 3222 48999999999999999999999999987775432 3578899999999999998754
No 16
>PRK10291 glyoxalase I; Provisional
Probab=99.78 E-value=6.9e-18 Score=132.80 Aligned_cols=122 Identities=58% Similarity=1.019 Sum_probs=93.1
Q ss_pred EEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHH
Q 020829 68 VFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 143 (321)
Q Consensus 68 ~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~ 143 (321)
.|.|+|+ +||+++|||++..+...++..+.++++..++......+++....+......+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 3789999 999999999998776555555677888765433344566655433333345568999999999999999
Q ss_pred HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCC
Q 020829 144 ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 189 (321)
Q Consensus 144 ~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~ 189 (321)
++|+++|+++..++....++..+++|+.|||||.|||++....+..
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~ 126 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRG 126 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccccc
Confidence 9999999998876655554455678899999999999998754443
No 17
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=7e-18 Score=150.81 Aligned_cols=131 Identities=52% Similarity=0.875 Sum_probs=101.5
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020829 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 186 ~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~ 265 (321)
...+++|+.|.|+|+++|++||+++|||++..+...++..+...++..++...+..+++....+......+.+..|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 45789999999999999999999999999876554444445555565443334566777654333333345678899999
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
|+|+++++++++++|+++..+|...+++..+.+||+|||||.|||+++..-
T Consensus 101 v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 151 (286)
T PLN02300 101 VEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT 151 (286)
T ss_pred eCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Confidence 999999999999999999888877766544678999999999999997543
No 18
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.77 E-value=1.4e-16 Score=145.67 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=150.6
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCC--ceEEEEeeeCCCCcceEEEEEeecCC-----------------
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGV----------------- 120 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~----------------- 120 (321)
++||.+.|.|. .||+..|||+.+.......+ ......+.-| ...+.++....+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 68999999999 99999999999876442111 1223334422 223333332111
Q ss_pred --CC------cCCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCC----CCeEEEEEECCCCcEEEEEecCC---
Q 020829 121 --DK------YDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 185 (321)
Q Consensus 121 --~~------~~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~----g~~~~~~~~DPdG~~iel~~~~~--- 185 (321)
.. ..+|.|+..++|.|+|++++++++.++|++...+|..... |.-.+.-+.-+.|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1567899999999999999999999999998887765432 12344556777888888887421
Q ss_pred ----------------C----CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----CceEEEEeccCCCCcce
Q 020829 186 ----------------T----PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----YKYTIAMMGYGPEDKNV 240 (321)
Q Consensus 186 ----------------~----~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 240 (321)
. -.+|+||++.|++++.++.||+++|||+.......++ .......+..+ +...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcE
Confidence 0 1259999999999999999999999998875433221 11233334322 2356
Q ss_pred EEEeeeccC----CCc------cCCCCCeeEEEEEeCCHHHHHHHHHHC----CCeeecCC
Q 020829 241 VLELTYNYG----VTD------YDKGNAYAQIAIGTDDVYKTAEAIKLF----GGKVTREP 287 (321)
Q Consensus 241 ~lel~~~~~----~~~------~~~~~~~~hlaf~v~dl~~~~~~l~~~----G~~~~~~p 287 (321)
.++|.++.. ..+ ...|+|++||||.|+||.+++++|+++ |+++...|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 777776432 111 245689999999999999999999999 99998754
No 19
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.77 E-value=1.7e-17 Score=134.16 Aligned_cols=125 Identities=62% Similarity=1.016 Sum_probs=94.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
.++|+||.|.|+|+ +||+++|||++..+...++..+..++++.++......+++.......+...+.++.|++|.|
T Consensus 15 ~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v 94 (150)
T TIGR00068 15 KRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGV 94 (150)
T ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEec
Confidence 67899999999999 99999999999776544444445566665433333445554433322333456899999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+|++++.++|+++|+++..+|...+.+..+.+||.||+||.|||++...
T Consensus 95 ~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 95 DDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred CCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 9999999999999999887776555555678899999999999998764
No 20
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.7e-17 Score=129.15 Aligned_cols=114 Identities=33% Similarity=0.632 Sum_probs=85.7
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCccCCCC
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN 257 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 257 (321)
++.|++|+|+|+++|++||+++|||++..+...++ +.+..+++...+...+..++|.++.+..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999877665544 3444444543323346789999876654555454
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 258 AYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 258 ~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+ |++|.|++. ++.++|+++|+++...|. ..++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 4 666667766 566999999998876433 27899999999999985
No 21
>PRK11478 putative lyase; Provisional
Probab=99.77 E-value=1.6e-17 Score=130.49 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=84.1
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-CceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hla 263 (321)
.+++||.|.|+|+++|.+||+++|||++......+. ..+... +... ....+++.....+.. .....++.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 568999999999999999999999999864322111 122111 1111 145666654222111 12234678999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|.|+|+++++++|+++|+++...+...+++ .+.+||+|||||.|||++.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEeC
Confidence 999999999999999999986443322233 4889999999999999873
No 22
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=1.6e-17 Score=135.94 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=87.6
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeeccc----CC--------------CCCceEEEEeccCCCCcceEEEeeecc
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR----DN--------------PEYKYTIAMMGYGPEDKNVVLELTYNY 248 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~lel~~~~ 248 (321)
+.+++||.|.|+|+++|++||+++|||++..+. .. ....+.+.++..+. +..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 457999999999999999999999999875321 10 01124455554321 4557777654
Q ss_pred CCCcc-C----CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCC-cc-CCCC-CceEEEEECCCCCEEEEEecc
Q 020829 249 GVTDY-D----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP-GP-LPGI-NTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 249 ~~~~~-~----~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p-~~-~~~~-~~~~~~~~DPdG~~iEl~~~~ 314 (321)
..... . .+.+..|+||.|+|+++++++|+++|+++..++ .. .++. ..+.+|++|||||.|||+++.
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 32211 1 235789999999999999999999998764432 11 1221 136899999999999999875
No 23
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.2e-17 Score=130.03 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=84.9
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEEEEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIAIG 265 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hlaf~ 265 (321)
+++|+.|.|+|+++|++||+++|||++..+...+...+...++..+ .+..+++........ .....+..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFD---DGARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecC---CCcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 5799999999999999999999999976443322233344444432 145566664322211 1223478899999
Q ss_pred eC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 266 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 266 v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999998777544443 25678999999999983
No 24
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=2.7e-17 Score=131.81 Aligned_cols=118 Identities=10% Similarity=0.119 Sum_probs=84.8
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc-eEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~ 265 (321)
+.+|+|++|.|+|++++.+||+++|||++..+...+++. ....++..+. ..+.+.+.. .+++++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~--~~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN--KPHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC--CcceEEEec-------CCCCCceEEEEE
Confidence 567999999999999999999999999986654322222 1233443221 133343322 123578999999
Q ss_pred eCCHHH---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 266 TDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 266 v~dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|+|+++ +.++|+++|+++..+|..+..+.++++||+|||||.|||+..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998777 668999999998877765442335789999999999999763
No 25
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.2e-17 Score=129.96 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=87.9
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
|.+++|+.|.|+|+++|++||+++||+++..... . ...++.......+..+.+.... ....++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 4689999999999999999999999999865432 1 1223433221234566665321 1236789999999
Q ss_pred CCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020829 267 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
+|++++. ++|+++|+++..+|...+.+.++++||+||+||.|||.....
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 9888776 599999999887776666544567899999999999997544
No 26
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=1.6e-17 Score=134.64 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=86.0
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCC-CCceEEEEeccCCCC---cceEEEeeeccCCCccCCCCCeeEEEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPED---KNVVLELTYNYGVTDYDKGNAYAQIAI 264 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~lel~~~~~~~~~~~~~~~~hlaf 264 (321)
+|+||+|.|+|+++|++||+++|||++......+ .......++..+... ..+.+.+.. ..++++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987554332 122334444432110 011111111 12468999999
Q ss_pred EeCCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 265 GTDDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 265 ~v~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
.|+|++++. ++|+++|+++..+|.....+...++|++|||||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999986 99999999998888766655446779999999999998654
No 27
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.75 E-value=5.9e-17 Score=134.38 Aligned_cols=122 Identities=39% Similarity=0.671 Sum_probs=94.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCC---------------cceEEEEEeecCCC
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 121 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~ 121 (321)
.-++.|++|.|+|+ +||+++|||++..+...++..+.++|+++++.. ....++|....+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 46899999999999 999999999999887777777888888653211 13468887644322
Q ss_pred C------cC----CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 122 K------YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 122 ~------~~----~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ +. .+.|+.|++|.|+|+++++++|+++|+.+...|... ...+++|++|||||.|||++..
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~--~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG--KMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC--CceeEEEEECCCCCEEEEEECC
Confidence 1 21 124899999999999999999999999998766432 2356788999999999999864
No 28
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.74 E-value=8.5e-17 Score=123.53 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=84.5
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCH
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDV 269 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl 269 (321)
+.|++|.|+|++++++||+++||+++..... +...+.+ +..++ ...+.+....... ...+...|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~--~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAV--FSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEE--EEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865443 2233333 33221 2233333322111 2334677999999999
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
++++++|+++|+++..+|...+++ ++.++++|||||.|||++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999888777654 589999999999999975
No 29
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=7.8e-17 Score=125.33 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=84.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-CceEEEEeccCCCCcceEEEeeeccCC--C-ccCCCCCeeEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGV--T-DYDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lel~~~~~~--~-~~~~~~~~~hla 263 (321)
.+++||.|.|+|++++++||+++|||++......++ ..+.+. +... ....+++...... . ....+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLD-LLLN---GGYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEE-EecC---CCcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999875432222 223322 2211 1344555432211 1 112335788999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
|.|+|+++++++|+++|+++..+|....++ .+.+|++||+||.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTG-KRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCc-eEEEEEECCCCCEEEecC
Confidence 999999999999999999987765443443 478999999999999975
No 30
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=6.5e-17 Score=125.86 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
..+++|+.|.|+|+++|.+||+++|||++..... ++ .. ++..........+.+.. ....+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RV-YLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eE-EEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3579999999999999999999999999865432 11 12 22221111233444432 1234678999999
Q ss_pred C---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 267 D---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 ~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+ |++++.++|+++|+++...|.....+.++.+||+|||||.|||....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 89999999999999987665433333357899999999999998764
No 31
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=6.5e-17 Score=126.62 Aligned_cols=119 Identities=23% Similarity=0.318 Sum_probs=85.1
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hl 262 (321)
+++|+.|.|+|++++++||+++|||++......++.+....++..+ ...++|........ ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5899999999999999999999999987543333333445555432 34566654212111 0124577899
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecC-CccCCCCCceEEEE--ECCCCCEEEEEe
Q 020829 263 AIGTDDVYKTAEAIKLFGGKVTRE-PGPLPGINTKITAC--LDPDGWKTVFVD 312 (321)
Q Consensus 263 af~v~dl~~~~~~l~~~G~~~~~~-p~~~~~~~~~~~~~--~DPdG~~iEl~~ 312 (321)
||.|+|+++++++|+++|+++..+ |...+++ .+.+|+ +||||++||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998864 5444443 255566 799999999975
No 32
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.73 E-value=2.7e-16 Score=121.81 Aligned_cols=116 Identities=53% Similarity=0.857 Sum_probs=88.3
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEEeCC
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~v~d 138 (321)
++||+|.|+|+ +||+++||+++......+++.+..+++..+.......+++...... .....+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 58999999999 9999999999987655444446667776543112345666543322 222344578899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 139 l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++++++++|+++..+|... ++++++||.||+||.+|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 3567899999999999985
No 33
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.72 E-value=2.7e-16 Score=128.61 Aligned_cols=120 Identities=20% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
|.+|+||+|.|+|+++|++||+++|||++......+.+.....++.... ....+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4679999999999999999999999999865433222222233333221 133343332 1245788999999
Q ss_pred CC---HHHHHHHHHHCCCee--ecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020829 267 DD---VYKTAEAIKLFGGKV--TREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~d---l~~~~~~l~~~G~~~--~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
+| +++++++|+++|+.. ..+|........+++|++|||||.||+++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 75 788889999999863 33444333222467899999999999986543
No 34
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.72 E-value=2.6e-16 Score=125.56 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+++|+.|.|+|+++|.+||+++|||++..+.. ...++..+ +..+.+.............+..|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999875421 12233322 34444433221111122346789999997
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|+++++++++++|+++..+|...+++ ++.+||+|||||.|||.+..
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999987776655554 58999999999999998754
No 35
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=3.5e-16 Score=125.10 Aligned_cols=118 Identities=24% Similarity=0.261 Sum_probs=85.8
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCC-----
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVD----- 121 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~----- 121 (321)
.+++||+|.|+|+ +||++ |||++..+...++ ....++++... .....++|.....+.
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 4799999999999 99998 9999876543221 22344555432 123456766532211
Q ss_pred --CcCCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 122 --KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 122 --~~~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
....+.|+.|+||.|+|+++++++|+++|+++..++.... .+.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1123458999999999999999999999999887665443 356789999999999999984
No 36
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=2.5e-16 Score=122.20 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=80.5
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeee----ccCCCccCCCCCeeEEEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY----NYGVTDYDKGNAYAQIAI 264 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~----~~~~~~~~~~~~~~hlaf 264 (321)
++.|+.|.|+|+++|++||+++|||++..... .. ..+ .. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~-~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTF-EG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEE-ec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 47899999999999999999999999864221 11 111 11 11111110 001111223345579999
Q ss_pred EeCCHHHHHHHHHHCCC-eeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 265 GTDDVYKTAEAIKLFGG-KVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~-~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
.|+|+++++++|+++|+ ++..+|...++| .+.++|+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888887876 4899999999999999874
No 37
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=2.8e-16 Score=125.47 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=85.2
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020829 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 191 ~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d-- 268 (321)
.||.|.|+|++++.+||+++|||++..+.. . ..+++.......++.+.+.. ....++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 599999999999999999999999876532 1 23445433222233333321 124589999999976
Q ss_pred -HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020829 269 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~ 317 (321)
+++++++|+++|+++..+|...+.+.++.+||+||||+.|||....+..
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~ 118 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEF 118 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCccee
Confidence 5677999999999998888776655568899999999999998765443
No 38
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=3.3e-16 Score=127.12 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=88.3
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCC---CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEE
Q 020829 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP---EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 262 (321)
Q Consensus 186 ~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hl 262 (321)
.+.+|+||.|.|+|++++++||+++|||++....... +......++..+. .+..+.+... ....++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 4578999999999999999999999999986543221 1123344444322 2334444321 123578999
Q ss_pred EEEeCCH---HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 263 AIGTDDV---YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 263 af~v~dl---~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+|.|+|+ ++++++|+++|+++..+|...+.+..+.+|++||+||.|||+...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9999865 468999999999998877666654458899999999999998654
No 39
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6.1e-16 Score=120.42 Aligned_cols=110 Identities=41% Similarity=0.795 Sum_probs=84.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCC
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGT 127 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~ 127 (321)
++.|++|.|+|+ +||+++|||++..+...++ +.+..+++..+++..+..++|..+++..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 689999999999 9999999999988765554 4444566665444456789998876655555555
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+ |++|.|++. ++.++|+++|+++...|. .++|+.||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 567777776 556999999999876543 17899999999999984
No 40
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.70 E-value=3.2e-16 Score=123.70 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=81.9
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC--
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 267 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~-- 267 (321)
|+||.|.|+|++++.+||+++|||++..... ... ++..+ +..+.+.............++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~--~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTA--YFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccc--eEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 111 22221 34454443222111122346789999997
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|+++++++|+++|+++..+|....++ ++.+||+|||||+|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~-~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRD-RKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCc-ceEEEEECCCCCEEEEecCc
Confidence 49999999999999987655443333 58999999999999999865
No 41
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=6.9e-16 Score=119.94 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=84.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC---CccCCCCCeeEEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV---TDYDKGNAYAQIAI 264 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~---~~~~~~~~~~hlaf 264 (321)
.+++|+.|.|+|++++++||+++|||++....... .+..+..+ ...+++...... .......+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFG------SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeC------CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 46899999999999999999999999987654321 22222222 234555432221 11123457889999
Q ss_pred EeCC-HHHHHHHHHHCCCeeecCCccCCC--CCceEEEEECCCCCEEEEEe
Q 020829 265 GTDD-VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 265 ~v~d-l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iEl~~ 312 (321)
.+++ +++++++|+++|+++..+|...++ +.++.+||+|||||+||+.+
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 999999999999999877765432 22478999999999999986
No 42
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.70 E-value=9e-16 Score=121.92 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=87.5
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC------cCCCCCceEEE
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 133 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hl~ 133 (321)
|+|++|.|+|+ +||+++|||++..+...+ ....+++..+ ...+.+........ ...+.|+.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 68999999999 999999999998764322 1234444422 33455543222111 12456899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020829 134 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 134 f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
|.|+|+++++++|+++|+++..+|...+ ++.+.++++||||+.|||+++...
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999998887644 467899999999999999997654
No 43
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.69 E-value=9.9e-16 Score=122.73 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=83.1
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc-eEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
..+|+||+|.|+|+ +||+++|||++..+...+++. ...+|+..+. . ...+.+.. ..+.+++|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~-~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-K-PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-C-cceEEEec-------CCCCCceEEEEE
Confidence 56899999999999 999999999987764333332 2345665432 2 22333321 113579999999
Q ss_pred eCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 136 VDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 136 v~dl~~---~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|+|+++ +.++|+++|+++..+|..+..+.++.+||.|||||.|||+..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999777 678999999998877755443346779999999999999864
No 44
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=5.9e-16 Score=119.19 Aligned_cols=117 Identities=23% Similarity=0.289 Sum_probs=84.6
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc--cCCCCCeeEEEEEeCCH
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDDV 269 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~--~~~~~~~~hlaf~v~dl 269 (321)
||.|.|.|++++++||+++|||++..+....+ ....+.+...+. ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999876543222 233444432211 134555543322211 12345678999999999
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
++++++++++|+++..+|...++ ++.+|++|||||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999988744444 589999999999999975
No 45
>PRK11478 putative lyase; Provisional
Probab=99.69 E-value=6e-16 Score=121.47 Aligned_cols=117 Identities=23% Similarity=0.261 Sum_probs=80.7
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-CceEEEEeeeCCCCcceEEEEEeecCC---CCcCCCCCceEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-EKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hl 132 (321)
..+++||+|.|+|+ +||+++|||++..+...++ ..+. ..+..+. ...+++.....+ .......|+.|+
T Consensus 4 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi 79 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG---QYVIELFSFPFPPERPSRPEACGLRHL 79 (129)
T ss_pred cceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC---CcEEEEEEecCCCCCCCCCCCCceeEE
Confidence 56899999999999 9999999999865422221 1121 1122211 235565442211 111234578999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|.|+|+++++++|+++|+++...+.... .+.+++||.|||||.||+++
T Consensus 80 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 80 AFSVDDIDAAVAHLESHNVKCEAIRVDPY-TQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEeCCHHHHHHHHHHcCCeeeccccCCC-CCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999999864432222 34678999999999999987
No 46
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.6e-15 Score=117.95 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=83.1
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc----cCCCCCeeEEEEEeCC
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIAIGTDD 268 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~----~~~~~~~~hlaf~v~d 268 (321)
-.|.|+|+++|++||+++||+++......+++......+..+ ...+.+........ ....++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999997654333333323333322 22333332221111 1233466799999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+++++++++++|+++..+|...++| .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999998888876 488999999999999964
No 47
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.2e-15 Score=118.98 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=80.8
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeecc--------C--CCccCCCCCe
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY--------G--VTDYDKGNAY 259 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~--------~--~~~~~~~~~~ 259 (321)
+.|+.|.|+|++++++||+++|||++..... ...+... ..+ ...+.+.... . .......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGEL--ETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEEe--cCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 5799999999999999999999999864322 1122221 111 1122111100 0 0011122344
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 260 AQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 260 ~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
.|++|.|+|+++++++++++|+++..+|...+++ .+.++++|||||.||++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 6999999999999999999999998888777876 3788999999999999874
No 48
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=3.4e-16 Score=126.89 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=84.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCC-CCceEEEEeeeCCCCc---ceEEEEEeecCCCCcCCCCCceEEEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDS---HFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
||+||+|.|+|+ +||+++||+++......+ ++....+|+..++... ...+.+.. ..+.|++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 589999999999 999999999987664433 2334567776542110 00111111 12468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 135 AVDDVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~dl~~~~---~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+|++++. ++|+++|+++..++.....+...++|+.||+||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999976 99999999998777655544556789999999999999754
No 49
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.68 E-value=8e-16 Score=119.55 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=81.0
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+|+|+.|.|+|+++|.+||+++|||++..+.. . ..++..........+.+.. ....++.|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 578999999999999999999999999876532 1 2233322111234444432 12357899999996
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|++++.++++++|+++...+.. ++. +..+||+|||||.||++...
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGD-PGH-GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCC-CCC-cceEEEECCCCCEEEEEEec
Confidence 6889999999999987543322 232 47899999999999998653
No 50
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.68 E-value=1.1e-15 Score=125.04 Aligned_cols=122 Identities=25% Similarity=0.203 Sum_probs=84.6
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEE----eC--------------CCCceEEEEeeeCCCCcceEEEEEeec
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKR----DI--------------PEEKYTNAFLGYGPEDSHFVIELTYNY 118 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~~~~l~l~~~~ 118 (321)
.++++||+|.|+|+ +||+++|||++..+. .. .......+++..++ +..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 35799999999999 999999999886421 10 01124556666432 3346666543
Q ss_pred CCCCc-----CCCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCC-ccc-C-CCCeEEEEEECCCCcEEEEEecCC
Q 020829 119 GVDKY-----DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP-GPV-K-GGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 119 ~~~~~-----~~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p-~~~-~-~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+.... ..+.|+.|+||.|+|+++++++|+++|+++...+ ... + ....+.+|+.|||||.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 22111 1246899999999999999999999998764432 111 1 112468999999999999998864
No 51
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.68 E-value=9e-16 Score=116.91 Aligned_cols=113 Identities=25% Similarity=0.188 Sum_probs=81.2
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeCC
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD 268 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hlaf~v~d 268 (321)
|+|++|.|+|++++++||+++||+++..+...+. . ..++..++ ...+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~--~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-P--GAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-C--ceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999865433221 1 12222221 23455554322211 1223467899999999
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
+++++++++++|+++..++.. ..+ ++.+++.||+||.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~-~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDG-VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCC-ccEEEEECCCCCEEeC
Confidence 999999999999999877654 222 4789999999999996
No 52
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=1.1e-15 Score=124.26 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=84.0
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeC
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTD 267 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hlaf~v~ 267 (321)
+++||+|.|+|+++|.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47999999999999999999999999875533 1 222222111 1256677765322111 122346889999998
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
| +++++++|+++|+++. ++...++ ++.+||+|||||.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 9999999999999854 3333332 57899999999999999864
No 53
>PRK06724 hypothetical protein; Provisional
Probab=99.68 E-value=9.3e-16 Score=120.35 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhc---CCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEE
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIA 263 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hla 263 (321)
..+++||+|.|+|+++|++||+++| |++.........+ ...+.+..... ......+..|+|
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~--~~~~~~g~~h~a 68 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDE--EIVRTLGPRHIC 68 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCc--cccCCCCceeEE
Confidence 3579999999999999999999976 5554321111111 11222211100 011234678999
Q ss_pred EEe---CCHHHHHHHHHHCCCeeecCCccCCC-CCc-eEEEEECCCCCEEEEEecc
Q 020829 264 IGT---DDVYKTAEAIKLFGGKVTREPGPLPG-INT-KITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 264 f~v---~dl~~~~~~l~~~G~~~~~~p~~~~~-~~~-~~~~~~DPdG~~iEl~~~~ 314 (321)
|.| +|+++++++|+++|+++..+|...+. +.+ +.+||+|||||.||++..+
T Consensus 69 f~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 69 YQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 998 68999999999999999878765442 223 7889999999999998763
No 54
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1.1e-15 Score=118.93 Aligned_cols=115 Identities=23% Similarity=0.305 Sum_probs=82.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC---cCCCCCceEEEEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hl~f~ 135 (321)
|++||+|.|+|+ +||+++|||++..+...+...+..+|+..++ +..+++........ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 589999999999 9999999999876544333344556666542 23456554222111 1233588999999
Q ss_pred eC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 136 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 136 v~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
|+ |+++++++|+++|+++..+|...+. +.+.+++.|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 96 4899999999999999876654433 334577999999999983
No 55
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=1.6e-15 Score=119.64 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCC--ceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY--KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~ 265 (321)
.+++|++|.|+|+++|++||+++||+++..+...... ....++.. + ...+++..... ...++..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-G----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-C----CeEEEEecCCC----CCCCCceEEEEE
Confidence 4689999999999999999999999987654321100 00111111 1 24455543211 122367899999
Q ss_pred eC--CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 266 TD--DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 266 v~--dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|+ |++++.++|+++|+++..+ .....+.++.+||+|||||.|||...
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecC
Confidence 98 7999999999999987643 23333336899999999999999865
No 56
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.68 E-value=1e-15 Score=118.86 Aligned_cols=114 Identities=22% Similarity=0.193 Sum_probs=81.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe-
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 266 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v- 266 (321)
.+++|+.|.|+|++++++||+++|||++..... .+. ++..........+.+.. ...++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRI--YLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeE--EEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 478999999999999999999999999865422 122 22211111233444432 1234688999998
Q ss_pred --CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 267 --DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 --~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+|+++++++++++|+++...|.....+.++.+|+.|||||.||++..-
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 479999999999999987654333333347899999999999998653
No 57
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.68 E-value=1.2e-15 Score=118.60 Aligned_cols=112 Identities=25% Similarity=0.257 Sum_probs=80.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+.+|+||+|.|+|+ +||+++|||++..... ++ .+++..........+.+.. ....++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 46899999999999 9999999999876521 11 2344432222233344421 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ |+++++++|+++|+++...|.....+.++.+||.|||||.||+++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999987665433334467899999999999998753
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=2e-15 Score=119.10 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=84.9
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHH
Q 020829 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVY 270 (321)
Q Consensus 191 ~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~ 270 (321)
+||.|.|+|+++|++||+++||+++......+ +.....++..+. ....+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987554322 222334444322 23445544311 1457899999999864
Q ss_pred ---HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 271 ---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 271 ---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+++++++++|+++..+|...+.+..++++|+|||||.|||.+..
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 78899999999998877655544457889999999999999765
No 59
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=1.4e-15 Score=121.94 Aligned_cols=115 Identities=16% Similarity=0.303 Sum_probs=83.8
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
+.+++|+.|.|+|+++|++||+++|||++..... . ...++..+. ....+.+.. ...+++.|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~--~~~~~~l~~-------~~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNS--DHHSIAIAR-------GPHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCC--CcceEEEcc-------CCCCceEEEEEEC
Confidence 4579999999999999999999999999864321 1 123343322 134444432 1235788999999
Q ss_pred CCHHHHH---HHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020829 267 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 267 ~dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
+|++++. ++|+++|+++..+|.....+..+++||+||+||.|||++...
T Consensus 68 ~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 68 PSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9877775 899999999887665443333467899999999999998753
No 60
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.67 E-value=9.7e-17 Score=125.14 Aligned_cols=118 Identities=28% Similarity=0.350 Sum_probs=81.3
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCC--CCCceEEEEeccCCCCcceEEEeeeccCCCccCCCC-----CeeE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDN--PEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN-----AYAQ 261 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~-----~~~h 261 (321)
+|+||+|.|+|++++++||+++|||++...... .........+..+ ...+.+...........+. ...|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG----EGHIELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST----SSCEEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc----ccceeeeeecccccccccccccccccee
Confidence 489999999999999999999999999876651 2222333444432 2233333322221111111 3456
Q ss_pred EEEEe---CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020829 262 IAIGT---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 262 laf~v---~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
+++.+ +|+++++++|++.|+++..+|.....+....+|++||+||.|||
T Consensus 77 i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 66665 57889999999999999988877666554556899999999997
No 61
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=1.7e-15 Score=119.99 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=83.4
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+||+|.|+|+ +||+++|||++..... . ..+|+..++...+..+.+.... ....|++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEeC
Confidence 5899999999999 9999999999876532 1 2456655432233455554321 12368999999999
Q ss_pred CHHHHH---HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 138 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 dl~~~~---~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
|++++. ++|+++|+++...|...+.++..++||.||+||.|||+...
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 988765 69999999987666555544556789999999999999653
No 62
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=1.3e-15 Score=118.64 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCC-ceEEEEeccCCCCcceEEEeeeccCCCc--cCCCCCeeEEEEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-KYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIG 265 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lel~~~~~~~~--~~~~~~~~hlaf~ 265 (321)
+++||.|.|.|+++|++||+++|||++..+....+. ....+.+.......+..+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766543221 1122223221111245666665332211 1223467899999
Q ss_pred eC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 266 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 266 v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
|+ |+++++++++++|+++..++. . ++ ++.+||+||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H-FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e-cc-eEEEEEECCCCCEEEeC
Confidence 98 579999999999999865433 2 22 58899999999999985
No 63
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=2.5e-15 Score=117.47 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=85.7
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCC-CCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hl 262 (321)
|+||+|.|+|++++.+||+++|||++....... +.....+++..+ +..+++........ ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 689999999999999999999999997654432 223344455432 45666665332211 1245678999
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCC---CCEEEEEe
Q 020829 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPD---GWKTVFVD 312 (321)
Q Consensus 263 af~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPd---G~~iEl~~ 312 (321)
+|.|+|+++++++++++|+++..+|...+.+ ++.+++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999998877533333 4556666665 99999975
No 64
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.4e-15 Score=117.24 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=81.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
-+++|+.|.|+|+++|++||+++||+++.... +.+..+.++ . +..+.+... ....+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeC
Confidence 36899999999999999999999999986522 222222222 1 344554431 11234579999886
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCC------CCCceEEEEECCCCCEEEEEecc
Q 020829 268 --DVYKTAEAIKLFGGKVTREPGPLP------GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~------~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|+++++++|+++|+++..+|...+ .+.++.+||+|||||.|||++.+
T Consensus 68 ~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 68 EEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 699999999999999877665431 12258999999999999999863
No 65
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=4.6e-15 Score=115.02 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=84.4
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC--ccCCCCCeeEEEEEeCCHH
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDVY 270 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~~~~~~hlaf~v~dl~ 270 (321)
+.|.|.|+++|.+||+++||+++......+++......+..+ +..+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 458899999999999999999987665433443333334332 2345554321110 1123346779999999999
Q ss_pred HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 271 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 271 ~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
++++++.+.|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEec
Confidence 99999999999999888766665 489999999999999986
No 66
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.66 E-value=2.4e-15 Score=119.90 Aligned_cols=114 Identities=20% Similarity=0.316 Sum_probs=84.0
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020829 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 60 m~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
|..+|+||.|.|+|+ +||+++|||++..+.. ..+++..+ +..+.+......+....+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEE
Confidence 466899999999999 9999999999875421 23555543 223444332221211234578899999
Q ss_pred eC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 136 VD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 136 v~--dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
++ |+++++++++++|+++..+|...+. +++.+|+.|||||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 8999999999999998766655443 568899999999999999764
No 67
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=1.9e-15 Score=118.13 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=80.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+|.|++|.|+|+++|.+||+++|||++..+.. . ..++..+. .+..+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 468999999999999999999999999864421 1 22344322 2444544321 135679999997
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCC--CCCceEEEEECCCCCEEEEEecc
Q 020829 268 D---VYKTAEAIKLFGGKVTREPGPLP--GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
| +++++++++++|+++..++.... .+.++++||+|||||.||++.+.
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 5 99999999999999876553211 22246789999999999998764
No 68
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.66 E-value=3e-15 Score=122.98 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+|+|+.|.|+|+++|++||+++|||++......+.+.....++.... ....+.+.... .....++.|+||.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~----~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP----AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC----CCCCCCceEEEEECC
Confidence 578999999999999999999999999875543332222223333221 12334433211 112246789999998
Q ss_pred C---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 268 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
| +++++++|+++|+++..+|.........++|++|||||+|||+..
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 557889999999998777755443333568999999999999987
No 69
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.66 E-value=5.1e-15 Score=116.02 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=84.5
Q ss_pred CceEEEEEeCChhHHHHHHHHhc---CCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---cCCCCCeeEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~~~~~~~~hl 262 (321)
+|+||.|.|+|++++++||+++| ||++..... . ...+... ..+..+.+........ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 48999999999999999999999 999876532 1 1122211 1245666654332211 1233567899
Q ss_pred EEEeC---CHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEec
Q 020829 263 AIGTD---DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 263 af~v~---dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
+|.|+ |+++++++|+++|+++...|... ....++.+|++|||||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99996 58999999999999998877642 12225789999999999999864
No 70
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.66 E-value=3.8e-15 Score=115.63 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.++.||+|.|+|+++|++||+++|||++..+.. .. . .++..++ .+..+.+... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~-~-~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG-A-LYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC-e-EEEEccC--CceEEEEEeC-------CCCceeEEEEEEC
Confidence 368999999999999999999999999865421 11 2 2233221 2455555431 1246789999996
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEec
Q 020829 268 ---DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|+++++++|+++|+++...|... ..+.++.+||+|||||.|||+..
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 59999999999999988654321 22224789999999999999864
No 71
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.65 E-value=5.7e-15 Score=114.18 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=80.1
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC----ccCCCCCeeEEEEEeC
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT----DYDKGNAYAQIAIGTD 267 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~----~~~~~~~~~hlaf~v~ 267 (321)
+..|.|+|+++|++||+++|||++.... ..+.. +..++ ....+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~~--~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYVS--LRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEEE--EecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 5789999999999999999999987542 12222 22211 12444443221111 0111223459999999
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
|+++++++++++|+++..+|...+++ .+.++++|||||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999988888777765 489999999999999986
No 72
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=6.3e-15 Score=114.90 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=83.1
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC-ccCCCCCeeEEEEEeC
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAIGTD 267 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~-~~~~~~~~~hlaf~v~ 267 (321)
+|+||.|.|+|++++++||+++|||++..... . .+.+..++ ....+.+....... ......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD----S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 68999999999999999999999999976521 1 23333321 24556565433221 1223457889999997
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
|+++++++++++|+++.. +...+. ++.+|++|||||+|||....
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEec
Confidence 599999999999998754 333333 47899999999999998754
No 73
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.64 E-value=5.4e-15 Score=120.00 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=85.8
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCC---CCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIP---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 133 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~ 133 (321)
+++|+||+|.|+|+ +||+++|||++..+...+ +.....+|+..++ . +..+.+... ..+.+++|++
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~i~~~~~------~~~~g~~Hia 78 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG-R-HHSLALAEG------PGPKRIHHLM 78 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC-C-CCCEEEEcC------CCCceeEEEE
Confidence 56899999999999 999999999987653321 1134567776533 2 223333221 1245899999
Q ss_pred EEeCCHH---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 134 IAVDDVA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 134 f~v~dl~---~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
|.|+|.+ +++++|+++|+++..++...+.++.+.+|+.||+||.|||+...
T Consensus 79 f~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 79 LEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9998754 68999999999998777655545667899999999999998764
No 74
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=5.9e-15 Score=114.64 Aligned_cols=116 Identities=30% Similarity=0.384 Sum_probs=81.0
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCC-CceEEEEeeeCCCCcceEEEEEeecCC--C-CcCCCCCceEEE
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPE-EKYTNAFLGYGPEDSHFVIELTYNYGV--D-KYDIGTGFGHFG 133 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~--~-~~~~~~g~~hl~ 133 (321)
.+|+||+|.|+|+ +||+++|||++..+...++ ..+. +.+... . ...+++...... . ....+.|++|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~-~--~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLN-G--GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecC-C--CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 4799999999999 9999999999876533222 2222 222221 1 223454432211 1 112345899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 134 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.|+|+++++++++++|+++...+.... .+.+.+|+.||+||.||++|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 9999999999999999999876554333 24567899999999999985
No 75
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.64 E-value=7.6e-15 Score=120.03 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=79.7
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+++|+||+|.|+|+ +||+++|||++......+++....+++..++ ....+.+.. ..+.++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 46899999999999 9999999999876543333333345554332 122333322 2345789999999
Q ss_pred CC---HHHHHHHHHHcCCee--eeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DD---VAKTVELIKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~--~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|+.. ...|.....++...+|+.|||||.||+++..
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 86 777899999999863 2334333322446799999999999999643
No 76
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.64 E-value=6.6e-15 Score=113.29 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=83.5
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC-
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 267 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~- 267 (321)
+++|+.|.|+|++++++||+++|||++..... .. .++..+. ..+..+.+... ...+..|++|.|+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 68999999999999999999999999876532 12 2233221 12444444431 1246789999997
Q ss_pred --CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 268 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 --dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|++++.++++++|+++...|...+++ ++.+|+.||+||.||++..
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEc
Confidence 68999999999999998877655554 5889999999999999865
No 77
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.64 E-value=3.7e-15 Score=116.62 Aligned_cols=115 Identities=29% Similarity=0.430 Sum_probs=82.1
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC------cCCCCCceEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hl 132 (321)
||+|++|.|+|+ +||+++|||++......++.....+++..++ ..++|........ ...+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 589999999999 9999999999876543333334566665432 2455544222111 0124588899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeC-CcccCCCCeEEEEE--ECCCCcEEEEEe
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~-p~~~~~g~~~~~~~--~DPdG~~iel~~ 182 (321)
||.|+|+++++++|+++|+++..+ |.... ++.+.+|+ +||||+.||+.|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 43332 24456677 799999999975
No 78
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.64 E-value=9.3e-15 Score=111.83 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=79.2
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHH
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 272 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~ 272 (321)
..|.|+|++++++||+++|||+.... .+ +. ..+.... ..+..+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~~-~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-WI-ATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-ce-EEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 46899999999999999999998532 11 22 2222211 1234455543211 123456999999999999
Q ss_pred HHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 273 AEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 273 ~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
+++|+++|+++..+|...+++ .+.+|+.||+||.|||+++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 999999999998888766765 3789999999999999976
No 79
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.63 E-value=6.3e-15 Score=114.53 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=76.8
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeecc-----CCCccCCCCCeeEEEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY-----GVTDYDKGNAYAQIAI 264 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~-----~~~~~~~~~~~~hlaf 264 (321)
++||+|.|+|+++|++||+. |||++...... ..+..+... + +..+.+.... .........+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVEAVLP--G---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEEEEeC--C---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999999999975 99997543221 112222121 1 1223222110 0001112334568888
Q ss_pred EeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 265 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 265 ~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
.+. |+++++++|+++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 864 89999999999999998888777775 37899999999999997
No 80
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.63 E-value=2e-14 Score=113.58 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=82.9
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d 268 (321)
+|+|+.|.|+|++++++||+++|||++...... .. ..++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998654321 12 22333221 12455665543222111233577899999987
Q ss_pred HH---HHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020829 269 VY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 269 l~---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
++ +++++|.++|+++..++. .++ ++.+|++||+||.|||+....
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCC
Confidence 55 588999999998776542 222 488999999999999997654
No 81
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.63 E-value=1.3e-14 Score=110.59 Aligned_cols=109 Identities=27% Similarity=0.333 Sum_probs=80.0
Q ss_pred EEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHH
Q 020829 194 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 273 (321)
Q Consensus 194 ~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~ 273 (321)
.|.|+|++++++||+++|||++..... ...+ ..+..+ +..+.+........ ....+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876543 1223 233321 35555554332211 12345679999999999999
Q ss_pred HHHHHCCCe-eecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 274 EAIKLFGGK-VTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 274 ~~l~~~G~~-~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
++++++|++ +..++...+++ .+.++++||+||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 66666666664 388999999999999975
No 82
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.62 E-value=9.7e-15 Score=113.01 Aligned_cols=112 Identities=27% Similarity=0.386 Sum_probs=81.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe-
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 266 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v- 266 (321)
.+|+|+.|.|+|++++++||+++|||++..... .+.. +.... ...+.+.+.. ...++..|++|.|
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVY--LRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEE--EECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 468999999999999999999999999864422 2222 22221 1233343322 1223568999999
Q ss_pred --CCHHHHHHHHHHCCCeeecCCccC--CCCCceEEEEECCCCCEEEEEecc
Q 020829 267 --DDVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 --~dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+|+++++++++++|+++..+|... +++ ++.++|+||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 579999999999999988776432 333 58899999999999998764
No 83
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.62 E-value=1.2e-14 Score=111.59 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+++|+.|.|+|+++|.+||++ |||++..+.. + .. ++..+.. ....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~---~~-~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D---EL-YYRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C---eE-EEecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 4689999999999999999999 9999865432 1 12 2332111 122222211 12346789999999
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|.+++.+.+++.|+.+...+. .+++ ++.+||+|||||.|||+..
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 999999999999998775443 3444 4889999999999999864
No 84
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=1e-14 Score=113.34 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=78.3
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe--
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT-- 266 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v-- 266 (321)
+|+|+.|.|+|++++++||+++|||++..... + .. ++..+ ...+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~~--~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--GA--YLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--ce--EEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 47999999999999999999999999865432 1 11 22221 22233322111 12235678999998
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+|+++++++++++|+++..++.. . ++.+||+|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeCC
Confidence 58999999999999998755432 2 47899999999999999753
No 85
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=8.2e-15 Score=112.18 Aligned_cols=109 Identities=22% Similarity=0.348 Sum_probs=76.5
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe--CCH
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--DDV 269 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v--~dl 269 (321)
|+.|.|+|++++++||+++|||++..+.. . ... +..+ ...+.+...... .....+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~--~~~~----~~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAY--FELA----GLWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeE--EEec----CeEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865432 1 111 2211 234444332211 11234678999999 479
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
++++++++++|+++...+...++ .++.+|++|||||+||+...
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 99999999999998644322222 25899999999999999853
No 86
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.2e-14 Score=113.41 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=78.3
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC-----Ccc--CCCCCeeEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-----TDY--DKGNAYAQI 262 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~-----~~~--~~~~~~~hl 262 (321)
+.+++|.|+|+++|++||++ |||++......+. ...+..+ + ...+.+...... .+. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 35799999999999999977 9999764332222 2222222 1 234444332110 000 123355799
Q ss_pred EEEeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 263 AIGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 263 af~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+|.|+ |+++++++++++|+++..+|...++ ++.+||+|||||+|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99997 5889999999999999988876665 478899999999999985
No 87
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.62 E-value=1.1e-14 Score=116.25 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=82.8
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCH-
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV- 139 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl- 139 (321)
.||+|.|+|+ +||+++|||++..+.. ...+|+...++..+..+.+.. ....|++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-----~~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-----DRIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-----CEEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4999999999 9999999999887632 135777654332233333321 2345899999999864
Q ss_pred --HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 140 --AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 140 --~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
++++++|+++|+++...|...+.++.+.+|+.||+|+.||+.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 5689999999999988877666556788999999999999997653
No 88
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=3.8e-15 Score=113.01 Aligned_cols=108 Identities=24% Similarity=0.341 Sum_probs=77.2
Q ss_pred EEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHH
Q 020829 195 LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAE 274 (321)
Q Consensus 195 L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~~ 274 (321)
|.|+|++++++||+++|||++..... .+..+..+.. .......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFR--FHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEE--EEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccc--hhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987322 2333333210 0011222332211 22335578899999999999999
Q ss_pred HHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 275 AIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 275 ~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
+++++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999888887775 48999999999999985
No 89
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.62 E-value=1.3e-14 Score=112.50 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=77.0
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~ 271 (321)
...|.|+|+++|++||++ |||++..+... .+.. +..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~--~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMI--LRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEE--EEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 357899999999999999 99998654321 2332 3322 345566543211 122234689999999999
Q ss_pred HHHHHHHCCCeee-------cCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 272 TAEAIKLFGGKVT-------REPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 272 ~~~~l~~~G~~~~-------~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
++++|+++|+++. .+|...+++ .+.++|+|||||.|||.++
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 9999999999842 344444554 4899999999999999885
No 90
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.5e-14 Score=110.94 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=79.2
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-cCCCCCeeEEEEEeCC---
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD--- 268 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-~~~~~~~~hlaf~v~d--- 268 (321)
+.|.|+|+++|++||+++||+++.... ..+..+... + +..+.+........ .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 679999999999999999999976432 223333222 1 24455544322211 1223467899999975
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
++++++++.++|+++..+|...++ ++.++|+|||||.|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 889999999999999988877666 47899999999999996
No 91
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=2.1e-14 Score=111.70 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred ceEEEEEeCChhHHHHHHHHh---cCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 190 LCQVMLRVGDLDRSINFYEQA---FGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
++|++|.|+|+++|++||+++ ||+++..+. . ..+ +. +.... ....+.+....+..+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~-~~~-~~-~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--G-PGA-VG-YGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--C-Cce-eE-eccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 589999999999999999998 689876443 1 122 22 22211 234555544322111 1223457999999
Q ss_pred CC---HHHHHHHHHHCCCeeecCCccCCC--CCceEEEEECCCCCEEEEE
Q 020829 267 DD---VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFV 311 (321)
Q Consensus 267 ~d---l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iEl~ 311 (321)
+| ++++.+++.++|+.+..+|...++ ...+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998887766653 2235789999999999997
No 92
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.3e-15 Score=129.15 Aligned_cols=222 Identities=19% Similarity=0.331 Sum_probs=148.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc--eEEEEeeeCCCCcceEEEEEeecCCC-------CcCCCC
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK--YTNAFLGYGPEDSHFVIELTYNYGVD-------KYDIGT 127 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~l~l~~~~~~~-------~~~~~~ 127 (321)
..+++||.+.|.|. .|||..|||+.......+.+. +...-+..| ....-+...+++. -.++|.
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g----~~vFv~~s~~~p~~~~~G~~l~~Hgd 90 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG----KIVFVFNSAYNPDNSEYGDHLVKHGD 90 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC----CEEEEEecCCCCCchhhhhhhhhccc
Confidence 57899999999999 999999999987643221111 111111111 1111122222221 136778
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEecCCC-------------------
Q 020829 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT------------------- 186 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~~~~~~------------------- 186 (321)
|+..+||.|+|++++.+.+.++|+.+..+|..... |..+++.+..+.-..+.++++...
T Consensus 91 gvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~ 170 (381)
T KOG0638|consen 91 GVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPK 170 (381)
T ss_pred chhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCC
Confidence 89999999999999999999999999988876654 445778888877777777775420
Q ss_pred -----CCCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCCCc--e---EEEEeccCCCCcceEEEeeeccCCCc--
Q 020829 187 -----PEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYK--Y---TIAMMGYGPEDKNVVLELTYNYGVTD-- 252 (321)
Q Consensus 187 -----~~~l~hi~L~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~lel~~~~~~~~-- 252 (321)
-.+++|++.+++ .++.+.+||.+.|||.-......+.-. + +.+.+. ..+....+-+.++.....
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKK 248 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccH
Confidence 136899999999 689999999999999865544322110 0 000111 111123333332211111
Q ss_pred --------cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCc
Q 020829 253 --------YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPG 288 (321)
Q Consensus 253 --------~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~ 288 (321)
+..|+|+.|+++.++||-.+.+.+++.|+++..+|.
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps 292 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPS 292 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCH
Confidence 246789999999999999999999999999998874
No 93
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=2.2e-14 Score=111.19 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=79.3
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC------ccCCCCCeeEEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT------DYDKGNAYAQIA 263 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~------~~~~~~~~~hla 263 (321)
+.|+.|.|.|++++++||+++|||++..+ +++.+. ++..+. ...+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~~--~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRLA--FFWVGG---RGMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCceE--EEEcCC---CcEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998754 122232 233222 1233333221110 111234678999
Q ss_pred EEe--CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 264 IGT--DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 264 f~v--~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
|.+ +|++++++++.++|+++...+. .+++ ++.+|++|||||.|||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~-~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRG-GRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCC-eeEEEEECCCCCEEEEecC
Confidence 998 5899999999999999876543 2333 5889999999999999864
No 94
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.60 E-value=2.3e-14 Score=111.28 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=79.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+|++|.|+|+ +||+++||+++..+.. ..+++..++......+.+.. ....|+.|++|.|
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 46899999999999 9999999999876522 13555543322233444432 1235889999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ +++++.++++++|+++...+... +.+..+||.|||||.+|++...
T Consensus 71 ~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 71 SSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 7 58889999999999875433222 2456789999999999999653
No 95
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.60 E-value=5.4e-14 Score=108.96 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=79.3
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020829 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 191 ~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d-- 268 (321)
.|+.|.|+|+++|.+||+++||++...+.. .+..+.... ....+.+..... ...++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DYAKFLLED----PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----CeeEEEecC----CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765432 122222221 123333332111 111478899999987
Q ss_pred -HHHHHHHHHHCCCeeecCCccCC-CCCceEEEEECCCCCEEEEEecc
Q 020829 269 -VYKTAEAIKLFGGKVTREPGPLP-GINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
++++++++.++|+++..+|.... ++.++.+|++||+||.|||+.+.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 88899999999999887664432 22247899999999999999864
No 96
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.60 E-value=3.3e-14 Score=116.78 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=83.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|+|++|.|+|+ +||+++|||++......+.+....+|+...+ ....+.+... .. ....++.|+||.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~--~~--~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRD--PA--GARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecC--CC--CCCCCceEEEEEC
Confidence 56899999999999 9999999999877644333333346665432 2223333221 11 1234689999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|+++...|.....+....+|+.||+||.||++...
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 86 5578999999999987666554433445689999999999999873
No 97
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.59 E-value=1.7e-14 Score=111.97 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=79.4
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..++.|++|.|+|+ +||+++|||++..... ..+++..........+.+.. ....++.|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEee-------CCCCceeEEEEEC
Confidence 56899999999999 9999999999875421 12444322112223344322 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 137 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 137 ~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
. |+++++++++++|+++...|.....+.++.+|+.|||||.+|++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 4 6999999999999998765444444455789999999999999864
No 98
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.59 E-value=3.9e-14 Score=113.56 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=81.6
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+||.|.|+|+ +||+++|||++..... . ..+|+..+.. ...+.+.. ....++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~-------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIAR-------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEcc-------CCCCceEEEEEECC
Confidence 4799999999999 9999999999865421 1 2456665432 22344422 12357889999999
Q ss_pred CHHHHH---HHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 138 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 138 dl~~~~---~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
|++++. ++|+++|+++...+.....+..+++||.||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877764 899999999887765544445677899999999999998753
No 99
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.59 E-value=2.1e-14 Score=113.25 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=78.2
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC-
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 138 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d- 138 (321)
|+||+|.|+|+ +||+++|||++.... + ..+++..+ +..+.+......+......++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~---~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E---KTAYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C---ccceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 68999999999 999999999986531 1 12344443 223444332221111223478999999974
Q ss_pred -HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 139 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 -l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+++++++|+++|+++..++..... +++.+||.|||||.||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 999999999999998755543332 457899999999999999764
No 100
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.58 E-value=5.7e-14 Score=107.68 Aligned_cols=110 Identities=26% Similarity=0.288 Sum_probs=79.6
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCH
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 139 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl 139 (321)
+.|++|.|+|+ +||+++||+++..... ++. ..+++..++ ...+.+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 58999999999 9999999999976532 122 234454432 1122332221111 1233566899999999
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 140 ~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++|+++|+++..+|...+ ++++.+++.|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999988886655 35688999999999999985
No 101
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.58 E-value=7.9e-14 Score=109.91 Aligned_cols=112 Identities=27% Similarity=0.405 Sum_probs=83.4
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHH
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~ 140 (321)
+||+|.|+|+ +||+++||+++......+ +....+|+..++ .+..+.+... ....++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~------~~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPG------PERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcC------CCCCCeeEEEEEcCCHH
Confidence 5999999999 899999999997664433 323556766542 2233444331 11458899999999864
Q ss_pred ---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 141 ---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 141 ---~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
+++++++++|+++..+|...+.+..+.+++.||+||.|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 689999999999987776555445678899999999999997654
No 102
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.58 E-value=4.2e-14 Score=110.46 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=79.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+|.||+|.|+|+ +||+++|||++..+. + ..+|+..++ .+..+.+... .++..|++|.|
T Consensus 4 ~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~---~~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v 67 (124)
T cd08361 4 LQDIAYVRLGTRDLAGATRFATDILGLQVAERT---A---KATYFRSDA--RDHTLVYIEG--------DPAEQASGFEL 67 (124)
T ss_pred EEEeeEEEEeeCCHHHHHHHHHhccCceeccCC---C---CeEEEEcCC--ccEEEEEEeC--------CCceEEEEEEE
Confidence 67899999999999 999999999986542 1 135666532 2333444321 13567899999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccC--CCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DD---VAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~~~~p~~~~--~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++++++|+++...+.... .++++++||.|||||.||++...
T Consensus 68 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 68 RDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 85 99999999999999876554321 23467789999999999998653
No 103
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=3.2e-14 Score=110.76 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccC-C--C-c-cCCCCCeeEEE--E
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG-V--T-D-YDKGNAYAQIA--I 264 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~-~--~-~-~~~~~~~~hla--f 264 (321)
||.|.|+|+++|++||+++|||++..... .+. .+...+ ....+.+..... . . . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWV--DFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Ccc--cccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999854321 111 121111 122222221110 0 0 0 01112455765 4
Q ss_pred EeCCHHHHHHHHHHCCCeeecCCccCC---CCCceEEEEECCCCCEEEEEe
Q 020829 265 GTDDVYKTAEAIKLFGGKVTREPGPLP---GINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~~~~~~p~~~~---~~~~~~~~~~DPdG~~iEl~~ 312 (321)
.++|+++++++|+++|+++..+|.... .+.++.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 568999999999999999987775421 122488999999999999974
No 104
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=5.2e-14 Score=111.03 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=78.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc-eEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020829 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 60 m~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
|..+|+||+|.|+|+ +||+++||++...+....... ....++..+ ...+.+..... ....+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~----~~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDS----LQERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCC----CCCCCceEEEE
Confidence 456899999999999 999999999886653211100 001122222 12344432111 12347899999
Q ss_pred EeC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 135 AVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~--dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+ |+++++++|+++|+++.... ....+.++.+||.|||||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 998 79999999999999876433 22334568999999999999999653
No 105
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.58 E-value=4.6e-14 Score=109.54 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=79.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d 138 (321)
+|.||+|.|+|+ +||+++|||++..+.. . ..+++..++ .++.+.+... ...++.|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 689999999999 9999999999865421 1 235555432 2344555331 12467899999974
Q ss_pred ---HHHHHHHHHHcCCeeeeCCccc--CCCCeEEEEEECCCCcEEEEEecC
Q 020829 139 ---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 ---l~~~~~~l~~~Gv~~~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+++++++|+++|+++...|... ..+.++.+||.|||||.||++...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 8899999999999998655321 233557899999999999999653
No 106
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.58 E-value=1.3e-14 Score=112.98 Aligned_cols=116 Identities=25% Similarity=0.310 Sum_probs=79.2
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeC--CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCC---CCCceEEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDI--PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI---GTGFGHFG 133 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~---~~g~~hl~ 133 (321)
+|+||+|.|+|+ +||+++|||+++..... ........++..+ .....+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG--EGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST--SSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc--ccceeeeeeccccccccccccccccceeEE
Confidence 689999999999 99999999999987652 2222344555543 2233333332222111111 01445666
Q ss_pred EEeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020829 134 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 134 f~v~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
+.+. |+++++++|++.|+++..+|.....+....+|+.||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6665 6888999999999999988877666555556899999999997
No 107
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4.6e-14 Score=110.21 Aligned_cols=115 Identities=30% Similarity=0.479 Sum_probs=82.7
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCC-CCceEEEEeeeCCCCcceEEEEEeecCCC-C-----cCCCCCceEE
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGVD-K-----YDIGTGFGHF 132 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~-----~~~~~g~~hl 132 (321)
|+||+|.|+|+ +||+++|||+........ ++....+++..+ +..+++....... . ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 58999999999 999999999997764432 233456677643 3455655433211 1 1346789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCC--CcEEEEEe
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 182 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPd--G~~iel~~ 182 (321)
+|.|+|+++++++++++|+++..+|.....++..++++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999887754444344444555555 99999975
No 108
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=5.5e-14 Score=109.53 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=78.9
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEE
Q 020829 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 135 (321)
Q Consensus 60 m~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~ 135 (321)
|.++++|+.|.|+|+ +||+++|||+..... +.+ +++..++ +..+.+... ....+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~------~~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQP------DGEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecC------CCCCCcceEEEE
Confidence 467899999999999 999999999987531 112 2233222 233444331 112346799998
Q ss_pred eC--CHHHHHHHHHHcCCeeeeCCccc------CCCCeEEEEEECCCCcEEEEEec
Q 020829 136 VD--DVAKTVELIKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 136 v~--dl~~~~~~l~~~Gv~~~~~p~~~------~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|+ |+++++++|+++|+++..+|... ...+++.+||.|||||.||+++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 87 69999999999999987665432 12356899999999999999986
No 109
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.57 E-value=5.5e-14 Score=106.05 Aligned_cols=112 Identities=30% Similarity=0.404 Sum_probs=83.2
Q ss_pred EEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH
Q 020829 192 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 271 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~ 271 (321)
|+++.|+|++++++||+++||+++...... .......+..+ ...+++....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998765532 11234444432 456666654332111234578899999999999
Q ss_pred HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020829 272 TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 272 ~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
+.++|.++|+.+..++....+ .++.+++.||+||.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 999999999998877652223 25899999999999986
No 110
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=105.82 Aligned_cols=120 Identities=26% Similarity=0.301 Sum_probs=88.9
Q ss_pred CCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEe
Q 020829 187 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 266 (321)
Q Consensus 187 ~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v 266 (321)
+..+.|..|.|+|++++++||+++|||+........+..+..+.... ...+..+.-.. ...++.+..++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~--~~~gG~l~~~~-----~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG--AGAGGGLMARP-----GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC--ccccceeccCC-----cCCCCCCCEEEEEec
Confidence 56789999999999999999999999998765433333333332221 11122221110 122225668899999
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+|++++.+++.++|.+++.++.+.|++ ++.+.+.||+||+|.|.++.
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999988865 69999999999999998764
No 111
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=8.4e-14 Score=113.23 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=80.6
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeC
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVD 137 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~ 137 (321)
.|+||+|.|+|+ +||+++|||++..+.. + ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 379999999999 9999999999987643 1 233433221 2244566655322211 123357899999999
Q ss_pred C---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 138 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
| +++++++|+++|+.+.. +... +..+.+||.|||||.||++...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997643 3222 3457899999999999999874
No 112
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.57 E-value=8e-14 Score=107.20 Aligned_cols=107 Identities=24% Similarity=0.333 Sum_probs=81.2
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
++|+|+.|.|+|+ +||+++|||++..... ..+++..+. ..+..+.+... ...++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 4799999999999 9999999999987632 135555432 22334444331 1247889999997
Q ss_pred ---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 138 ---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 138 ---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
+++++.++++++|+++...+...+ ++++.+++.||+||.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEc
Confidence 588999999999999988775333 356789999999999999965
No 113
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=7.1e-14 Score=107.44 Aligned_cols=113 Identities=24% Similarity=0.294 Sum_probs=80.5
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC--CcCCCCCceEEEEEeCCH
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDV 139 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hl~f~v~dl 139 (321)
||+|.|+|+ +||+++|||++..+....++ ...+.+.... .....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG-FRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC-cEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 899999999 99999999999876542222 2334343221 113445554332221 112345788999999999
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 140 ~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++++++|+++..++.... .++.+++.||+||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999999999988774333 4578999999999999975
No 114
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=1.4e-13 Score=107.31 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=81.4
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC-CCcCCCCCceEEEEEe
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAV 136 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hl~f~v 136 (321)
++|+||+|.|+|+ +||+++|||++.... + ..+++..++ ....+.+...... .......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 4799999999999 999999999998662 1 134555432 2344555443222 1123445789999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
++ +++++++++++|+++... ... +.++.+|+.|||||++|+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecC
Confidence 74 899999999999987543 222 24467899999999999997654
No 115
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=1.1e-13 Score=106.09 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=73.3
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeE--EEEEe
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQ--IAIGT 266 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~h--laf~v 266 (321)
+|+||.|.|+|+++|.+||+ .|||++..+.. ...+ ...+ .....+.+... ...+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~~-~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLEL-RTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceEE-EecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 68999999999999999997 69999864321 1222 2211 11333434321 1223444 45556
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
+|+++++++|+++|+++..++ .+++ .+.+||+|||||.|||...
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--PGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--CcCC-CCEEEEECCCCCEEEEecC
Confidence 899999999999999987665 2332 3679999999999999854
No 116
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=1.1e-13 Score=107.40 Aligned_cols=113 Identities=27% Similarity=0.349 Sum_probs=80.9
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC---CCcCCCCCceEEEE
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHFGI 134 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hl~f 134 (321)
.+|+||.|.|+|+ +||+++|||+........ .+ ..+..++ ..+.+...... .....+.|..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 4799999999999 999999999997653211 12 2333332 23444432211 11234468899999
Q ss_pred EeCC-HHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEe
Q 020829 135 AVDD-VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 135 ~v~d-l~~~~~~l~~~Gv~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~~ 182 (321)
.+++ +++++++|+++|+++...|....+ +.++.+|+.|||||.+|+++
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 999999999999998877654322 34578999999999999986
No 117
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.56 E-value=1.2e-13 Score=107.48 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=79.4
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCC-ceEEEEeeeCCCCcceEEEEEeecCCC--CcCCCCCceEEEEE
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEE-KYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hl~f~ 135 (321)
.|+||+|.|+|+ +||+++|||+...+....+. ....+++.......+..+.+....... ......++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999 99999999998876543221 122333432211223356665432221 11233468899999
Q ss_pred eC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 136 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 136 v~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
|+ ++++++++++++|+++...+. . ++++.+||.||+||.||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 98 479999999999999865433 2 3567899999999999984
No 118
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.2e-13 Score=106.66 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=81.4
Q ss_pred eceEEEEEeCCh----hhhhhcc---CCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC---cCCCCCceEE
Q 020829 63 FPLIVVFPAGDG----RFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHF 132 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hl 132 (321)
+|+||+|.|+|+ +||+++| ||++..+.. ++ ..|... ..+..+.+.......+ ...+.|+.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 489999999999 9999999 999987642 11 223322 1134455554332211 1344678999
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeeeCCccc--CCCCeEEEEEECCCCcEEEEEec
Q 020829 133 GIAVDD---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 133 ~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
+|.|+| +++++++|+++|+.+...+... ..++++.+|+.|||||.+||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999974 8899999999999998876642 23456789999999999999853
No 119
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=7.9e-14 Score=108.10 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=76.2
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEe----ecCCCCcCCCCCceEEE
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY----NYGVDKYDIGTGFGHFG 133 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~----~~~~~~~~~~~g~~hl~ 133 (321)
+++.|+.|.|+|+ +||+++||+++..+.. ....+ ..+ ..+.+.. .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~-----~~~~~-~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG-----ENVTF-EGG-----FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC-----ceEEE-ecc-----ceeccchhhhccCCcccccccCCceEEE
Confidence 3789999999999 9999999999864321 11111 111 1111111 00111112234556999
Q ss_pred EEeCCHHHHHHHHHHcCC-eeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 134 IAVDDVAKTVELIKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 134 f~v~dl~~~~~~l~~~Gv-~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|.|+|+++++++|+++|+ ++..+|...++ +.+.++|+|||||.|||.++
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999999985 67777776665 46789999999999999875
No 120
>PRK06724 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-13 Score=107.55 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=73.8
Q ss_pred eeeeceEEEEEeCCh----hhhhhcc---CCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEE
Q 020829 60 FSFFPLIVVFPAGDG----RFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 132 (321)
Q Consensus 60 m~~~i~Hv~l~v~Dl----~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl 132 (321)
|..+|+||+|.|+|+ +||+++| |++.........+. ..+.+..... ......|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~--------------~~l~l~~~~~--~~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGE--------------SEIYFKEVDE--EIVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCC--------------eeEEEecCCc--cccCCCCceeE
Confidence 467899999999999 9999966 66654221111111 1122211000 01123478899
Q ss_pred EEEe---CCHHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEEec
Q 020829 133 GIAV---DDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 133 ~f~v---~dl~~~~~~l~~~Gv~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~~~ 183 (321)
||.| +|+++++++|+++|+++..+|...+. .+.+.++|.|||||.||+...
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 9998 67999999999999999877755432 234678999999999999865
No 121
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.55 E-value=6e-14 Score=106.75 Aligned_cols=109 Identities=26% Similarity=0.276 Sum_probs=78.6
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeCC
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD 138 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~d 138 (321)
|+|++|.|+|+ +||+++||+++..+...+ ...+++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 68999999999 999999999987553322 12345554332 2345544322211 1234578899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020829 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 139 l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
+++++++++++|+++..++.. .. +.+.+++.||+||.+|+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 999999999999998877654 22 45678999999999996
No 122
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.3e-13 Score=105.76 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=72.4
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHH
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 272 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~ 272 (321)
..|.|+|+++|++||++ |||++.... ..+.. +..+ ...+.+..... ....+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~~~--l~~~----~~~l~l~~~~~----~~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNLAY--FRLG----NCAFYLQDYYV----KDWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCEEE--EEcC----CEEEEeecCCC----cccccCCEEEEEECCHHHH
Confidence 46889999999999987 999997653 22333 3322 23343332111 1112345899999999999
Q ss_pred HHHHHHCCCeee-----cCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 273 AEAIKLFGGKVT-----REPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 273 ~~~l~~~G~~~~-----~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+++|+++|+++. .+|...+++ ++.++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 999999998743 234444555 599999999999999864
No 123
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=2.5e-13 Score=105.04 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=76.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCC------CccCCCCCeeEEEEEe
Q 020829 193 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV------TDYDKGNAYAQIAIGT 266 (321)
Q Consensus 193 i~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~------~~~~~~~~~~hlaf~v 266 (321)
|.|.|+|+++|.+||+++|||++..+. ...+. .+..+ +..+.+...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGVA--FFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCceE--EEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 12222 23321 345555432110 0111222334566655
Q ss_pred ---CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 267 ---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 267 ---~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
+|+++++++++++|+++..+|...+++ ++.++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 689999999999999998887766665 589999999999999975
No 124
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.53 E-value=5.6e-13 Score=105.29 Aligned_cols=116 Identities=27% Similarity=0.358 Sum_probs=81.3
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 138 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d 138 (321)
+|+||+|.|+|+ +||+++|||++...... ...+++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999 99999999998765321 1245555431 12334555443222111234578899999997
Q ss_pred HH---HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020829 139 VA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 139 l~---~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
++ +++++|+++|+++...+. .+.++.+++.||+||.+|++...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD---HGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC---CCceeEEEEECCCCCEEEEEEcCCC
Confidence 55 588999999998776532 2245778999999999999987653
No 125
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.52 E-value=2e-13 Score=123.20 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=82.5
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+++|+.|.|+|++++++||+++|||++..+... .. ++.......+..+.+.. ....++.|++|.|+
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~-------~~~~g~~hiaf~v~ 69 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ-----RV-YLKAWDEWDHYSVILTE-------ADTAGLDHMAFKVE 69 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc-----eE-EEEeccccccceEeecc-------CCCCceeEEEEEeC
Confidence 4689999999999999999999999998654321 11 22211111133444432 12346889999997
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccc
Q 020829 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
|+++++++|+++|+++...|.....+.++.+||+|||||.|||++...
T Consensus 70 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 70 SEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred CHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 799999999999999876554222222578999999999999998654
No 126
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.52 E-value=4.3e-13 Score=102.89 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=76.2
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+||.|.|+|+ +||++ |||++..+. ++ .+|+..+. .....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYG-TDPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCC-CccEEEEccc-------CCcCcccEEEEEEC
Confidence 5799999999999 99999 999986552 11 24554322 1222222211 12347889999999
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
|.+++.+.+++.|+.+...+. .+ ++++.+||.|||||.|||+...
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEecc
Confidence 999999999999998765432 23 3567899999999999998653
No 127
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.51 E-value=1.6e-12 Score=100.92 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=79.4
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC----cCCCCCceEEEEEeC
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK----YDIGTGFGHFGIAVD 137 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hl~f~v~ 137 (321)
+-.|.|+|+ +||+++||+++......+++....+.+..++ ..+.+........ .....+..+++|.|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVD 77 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEEC
Confidence 346899999 9999999999987654444433334455432 1233332221111 122345668999999
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|+++++++++++|+++..+|...+. +.+.++++|||||.|+|.+
T Consensus 78 d~d~~~~~l~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 78 DVDAHYERARAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred CHHHHHHHHHHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 9999999999999999988877665 4577899999999999964
No 128
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.50 E-value=4.4e-13 Score=120.42 Aligned_cols=115 Identities=25% Similarity=0.344 Sum_probs=82.7
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
+++|+||+|.|+|+ +||+++|||++..+...+.+.....|+..+. ....+.+.. ..+.|++|+||.|
T Consensus 134 ~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v 204 (294)
T TIGR02295 134 PVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWV 204 (294)
T ss_pred ceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEc
Confidence 67999999999999 9999999999877644333433445554322 122233321 1246899999999
Q ss_pred CC---HHHHHHHHHHcCCe--eeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DD---VAKTVELIKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~--~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+| +++++++|+++|++ +...|...+.+...++|+.||+||.||++...
T Consensus 205 ~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 205 HDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 98 55578999999987 55556544433456799999999999999743
No 129
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.50 E-value=5.6e-13 Score=103.06 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=78.4
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 137 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~ 137 (321)
.+|+|+.|.|+|+ +||+++|||+...... . .+++..+. .....+.+.. ....++.|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 3799999999999 9999999999875422 1 23444322 2223333321 11236789999994
Q ss_pred ---CHHHHHHHHHHcCCeeeeCCcccC-CCCeEEEEEECCCCcEEEEEecC
Q 020829 138 ---DVAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 ---dl~~~~~~l~~~Gv~~~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
++++++++++++|+++..+|.... .++++.+++.||+||.+||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 689999999999999877654332 22467889999999999999764
No 130
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.49 E-value=2e-12 Score=100.11 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=80.3
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--CCcCCCCCceEEEEEeCCHH
Q 020829 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DKYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 67 v~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~~~~~~g~~hl~f~v~dl~ 140 (321)
+.|.|+|+ +||+++||+++......+++....+.+..++ ..+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 45889999 9999999999987755444444444455432 23444432111 01123345679999999999
Q ss_pred HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 141 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 141 ~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++.++|+++..+|...+. +.+.+++.||+||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 9999999999999888765554 5678999999999999986
No 131
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.48 E-value=7.4e-13 Score=102.26 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=75.6
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--C---CcCCCCCceEEEEEe
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--D---KYDIGTGFGHFGIAV 136 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~---~~~~~~g~~hl~f~v 136 (321)
++.|.|+|+ +||+++|||++.... ..+ +.+..++ ....+.+...... + ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCC--CceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 678999999 999999999987541 112 3333322 1233444322111 1 11233344 899999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|+++++++++++|+++..+|...+. +.+.+++.||+||.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 99999999999999998887766654 4678999999999999985
No 132
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=7.1e-13 Score=102.99 Aligned_cols=119 Identities=24% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccC--------C-CCC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYD--------K-GNA 258 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~--------~-~~~ 258 (321)
+++.|+.|.+++..+...||...||++.....+.+......+... ....+||.++.+..... . +.|
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~-----~~~~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS-----RNAKLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec-----ccCceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 456677777777777777777777776554433322222222222 15678888876654321 1 238
Q ss_pred eeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCc-eEEEEECCCCCEEEEEecc
Q 020829 259 YAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINT-KITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 259 ~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~-~~~~~~DPdG~~iEl~~~~ 314 (321)
.+||||+|+|+++++.+|++.|+++...|. .|.. ..+|+.||||++|||..+.
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~~---dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKLK---DGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecCC---CccccceeEEECCCCCeEEEeecC
Confidence 999999999999999999999999876653 2322 6899999999999998653
No 133
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.47 E-value=1.4e-12 Score=101.58 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=74.8
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeec--------C--CCCcCCCCCc
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY--------G--VDKYDIGTGF 129 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~--------~--~~~~~~~~g~ 129 (321)
+.|+.|.|+|+ +||+++|||+...... ++.+.. +..+ ...+.+.... . ........+.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 57999999999 9999999999865422 212211 1111 1111111100 0 0111112233
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 130 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 130 ~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
.+++|.|+|+++++++++++|+++..+|...++ +.+.++++|||||.+|++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 589999999999999999999999888776665 45678999999999999864
No 134
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.47 E-value=9.1e-13 Score=102.32 Aligned_cols=105 Identities=27% Similarity=0.375 Sum_probs=75.0
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe--
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV-- 136 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v-- 136 (321)
+|+||.|.|+|+ +||+++|||++....+ + .+++..+. ..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~----~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD----LWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC----EEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 479999999999 9999999999876532 1 23444331 12233221111 1235678999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+|+++++++++++|+++...+.. .++.+||.|||||.+|++...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 47999999999999998655432 236799999999999999764
No 135
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.45 E-value=1.6e-12 Score=116.35 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=82.2
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeC--CCC-ceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDI--PEE-KYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 133 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~ 133 (321)
+.+|+||+|.|+|+ +||+++|||++..+... +++ .+..+|+.+++. +..+.+... ....+++|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEE
Confidence 56899999999999 99999999998765322 112 123567766432 223333211 1245899999
Q ss_pred EEeCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 134 IAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 134 f~v~dl~~---~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|.|+|+++ ++++|+++|+ +...|...+.+....+|+.||+||+||+...
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 99998776 8999999999 5555555444466789999999999999853
No 136
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.45 E-value=1.7e-12 Score=98.33 Aligned_cols=104 Identities=25% Similarity=0.309 Sum_probs=71.8
Q ss_pred EEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHHH
Q 020829 69 FPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 144 (321)
Q Consensus 69 l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~~ 144 (321)
|.|+|+ +||+++|||++....+ .+ +.+..+.........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 689999 9999999999988422 12 223322110011122222211 22335577899999999999999
Q ss_pred HHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 145 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 145 ~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++|+++..+|...++ +.+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999999888877654 568899999999999986
No 137
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.44 E-value=1.5e-12 Score=99.45 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=73.1
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC--CH
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD--DV 139 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~--dl 139 (321)
||.|.|+|+ +||+++||+++..+.. . .+++..+ ...+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 899999999 9999999999876531 1 2334332 1233332221111 12346789999995 79
Q ss_pred HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 140 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 140 ~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++++++++|+++...+.... +.++.+|+.|||||.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999865433222 245789999999999999854
No 138
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.44 E-value=3.3e-12 Score=97.57 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=74.9
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
+..|.|+|+ +||+++|||++... .+ ..+++..++ ..+..+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 356889999 99999999998643 11 233343322 1233344432211 12345699999999999
Q ss_pred HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 142 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 142 ~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++|+++|+++..+|...++ +.+.+++.||+||.|+++++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 999999999999887766554 45778999999999999975
No 139
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=3.5e-12 Score=98.73 Aligned_cols=109 Identities=27% Similarity=0.349 Sum_probs=76.3
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCC------CcCCCCCceEEE
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD------KYDIGTGFGHFG 133 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~------~~~~~~g~~hl~ 133 (321)
|.||.|.|+|+ +||+++|||++..+ +++. .+++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999 99999999998764 1222 355555432 223332211100 112234788999
Q ss_pred EEeC--CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 134 IAVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~--dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.++ |++++++++.++|+++...+. .. .+++.+++.||+||.||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~-~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WP-RGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CC-CCeeEEEEECCCCCEEEEec
Confidence 9994 799999999999999876553 22 35577999999999999986
No 140
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=3.9e-12 Score=98.84 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=75.4
Q ss_pred ceEEEEEeCCh----hhhhhc---cCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 64 PLIVVFPAGDG----RFYTEC---LGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
|+||+|.|+|+ +||+++ ||++...+. .+ . . +++..+. ....+.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~-~-~~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G-A-VGYGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c-e-eEeccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 68999999999 999999 699987553 11 1 2 2233221 123455544322111 1223456999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCC--CCeEEEEEECCCCcEEEEE
Q 020829 137 DD---VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~ 181 (321)
++ +++++++++++|+.+..+|..... ...+.+|+.|||||.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877765542 2345689999999999997
No 141
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.43 E-value=8.5e-13 Score=100.63 Aligned_cols=95 Identities=23% Similarity=0.269 Sum_probs=74.0
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc--cCCCCCeeEEEEEeCC
Q 020829 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDD 268 (321)
Q Consensus 191 ~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~--~~~~~~~~hlaf~v~d 268 (321)
+||++.|+|+++|++||+++||+........+..+....++..+. ....+||+++..... ...+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 699999999999999999999998876555555555665555432 127889888655432 1467799999999999
Q ss_pred HHHHHHHHHHCCCeeecCC
Q 020829 269 VYKTAEAIKLFGGKVTREP 287 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p 287 (321)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 142
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.42 E-value=4.2e-12 Score=97.14 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=69.5
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEE--Ee
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI--AV 136 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f--~v 136 (321)
+|+||+|.|+|+ +||+ +|||++..+. + . ..+...+ .....+.+... ...++.|++| .+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~-~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--G-LELRTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--c-eEEEecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 689999999999 9997 6999986542 1 1 2232222 12222333221 1224445444 45
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+|+++++++|+++|+++..++. .. ..+.+||.||+||.|||....
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~--~~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPP--GA-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCC--cC-CCCEEEEECCCCCEEEEecCC
Confidence 7999999999999999876652 22 345689999999999999653
No 143
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.42 E-value=6e-12 Score=97.40 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=75.0
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC--
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 138 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d-- 138 (321)
-|+.|.|+|+ +||+++||++...+.. + . ..|.. +. ....+.+..... ....++.|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~-~-~~~~~-~~--~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D-Y-AKFLL-ED--PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C-e-eEEEe-cC--CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 5999999999 9999999999865521 1 2 23322 11 122333322111 111588899999987
Q ss_pred -HHHHHHHHHHcCCeeeeCCcccC-CCCeEEEEEECCCCcEEEEEecC
Q 020829 139 -VAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 139 -l~~~~~~l~~~Gv~~~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+++++++++++|+++...+.... .+..+.+|+.||+||.|||++..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999877654332 22346799999999999999753
No 144
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.42 E-value=9.9e-12 Score=109.11 Aligned_cols=220 Identities=19% Similarity=0.188 Sum_probs=140.4
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--CC--cCCCCCceEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DK--YDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~--~~~~~g~~hl 132 (321)
...+++|.+.|+|. .=|-..|||+........ ...+| .-| ...+-+...... .. ..+|+++..+
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk---~v~l~-rQG----dinlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK---AVTLY-RQG----DINLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc---ceeEE-EeC----CEEEEEcCCCcchhhHHHHhcCCchhee
Confidence 45899999999999 334456999987653322 12233 222 222333222111 11 2578899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcc-----cC---CCCeEEEEEECCCC-cEE---EEEec--C--CC---CCCceEE
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGP-----VK---GGNTVIAFIEDPDG-YKF---ELLER--G--PT---PEPLCQV 193 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~-----~~---~g~~~~~~~~DPdG-~~i---el~~~--~--~~---~~~l~hi 193 (321)
+|.|+|...++++..+.|.+....+.. .+ +-++..+||.|..| ..+ ++... . .. ..+|+|+
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl 171 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHL 171 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechh
Confidence 999999999999999999965443321 11 12456788888883 211 11111 1 11 2479999
Q ss_pred EEEeC--ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc-------cCCCCCeeEEEE
Q 020829 194 MLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-------YDKGNAYAQIAI 264 (321)
Q Consensus 194 ~L~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~-------~~~~~~~~hlaf 264 (321)
+++|+ .++....||+++|||+.......++..-.+..-...+.+....+-|....+... ...|.|+.|+||
T Consensus 172 ~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~ 251 (363)
T COG3185 172 THNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAF 251 (363)
T ss_pred hhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEe
Confidence 99986 899999999999999988766544322112111111223344554443222211 246789999999
Q ss_pred EeCCHHHHHHHHHHCCCeeecCCc
Q 020829 265 GTDDVYKTAEAIKLFGGKVTREPG 288 (321)
Q Consensus 265 ~v~dl~~~~~~l~~~G~~~~~~p~ 288 (321)
.++||-++.++++++|+++...|.
T Consensus 252 ~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 252 GTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred cccHHHHHHHHHHHcCCccCCCch
Confidence 999999999999999999987663
No 145
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.41 E-value=5.7e-12 Score=94.89 Aligned_cols=108 Identities=32% Similarity=0.371 Sum_probs=79.8
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
|++|.|+|+ +||+++||++....... .....+++..+ ...+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999 99999999998876432 11345555543 345666553332211245678899999999999
Q ss_pred HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020829 142 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 142 ~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
+.++|+++|+.+...+... ..+...+++.||+||.|++
T Consensus 75 ~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 9999999999887766422 2356889999999999985
No 146
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.40 E-value=9.6e-12 Score=94.67 Aligned_cols=105 Identities=28% Similarity=0.319 Sum_probs=74.4
Q ss_pred EEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHHH
Q 020829 68 VFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 143 (321)
Q Consensus 68 ~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~~ 143 (321)
.|.|+|+ +||+++|||++..... +. ..+++..+ +..+.+......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 6899999 9999999999877642 12 23445432 234455443222111 2345668999999999999
Q ss_pred HHHHHcCCe-eeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 144 ELIKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 144 ~~l~~~Gv~-~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
++++++|++ +..++...++ +.+.+++.||+||.||++|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999998 5555554443 4578899999999999985
No 147
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.2e-12 Score=106.72 Aligned_cols=121 Identities=39% Similarity=0.727 Sum_probs=103.2
Q ss_pred CCCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-----------CceEEEEeccCCCCcceEEEeeeccCCCcc
Q 020829 185 PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDY 253 (321)
Q Consensus 185 ~~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~ 253 (321)
....+.-|+++.|.|.++++.||+++|||++.+..++++ +.|.-.++++++++.++++||+++.+...+
T Consensus 13 ~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Y 92 (299)
T KOG2943|consen 13 ADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKY 92 (299)
T ss_pred ccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccce
Confidence 345789999999999999999999999999998776665 677778899999999999999999999999
Q ss_pred CCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 254 DKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 254 ~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
.-|+++.|+.+.++|+-..++.+...|.+ .++ .-.+++.||||+.++|.++.
T Consensus 93 elGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g-~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 93 ELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSG-CGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred eccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccc-eEEEEEECCCCcEEEEeccC
Confidence 99999999999999988888887766542 112 35789999999999999743
No 148
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.39 E-value=5.1e-12 Score=98.27 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=70.5
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC----CCC-cCCCCCceEEE--E
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG----VDK-YDIGTGFGHFG--I 134 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~----~~~-~~~~~g~~hl~--f 134 (321)
||+|.|+|+ +||+++|||++..... . .+.+..+ +....+.+..... ... .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 999999999 9999999999865321 1 1222221 1122232221110 000 01122456765 4
Q ss_pred EeCCHHHHHHHHHHcCCeeeeCCcccC---CCCeEEEEEECCCCcEEEEEe
Q 020829 135 AVDDVAKTVELIKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 135 ~v~dl~~~~~~l~~~Gv~~~~~p~~~~---~g~~~~~~~~DPdG~~iel~~ 182 (321)
.++|+++++++|+++|+++..+|.... .++++.+|+.|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567999999999999999987765422 234688999999999999974
No 149
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.39 E-value=4.6e-12 Score=96.58 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=77.3
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC--cCCCCCceEEEEEeCC
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIAVDD 138 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hl~f~v~d 138 (321)
+||+|.|+|+ +||+++||++.......+......+++..++.. ..++|..+.+..+ .+.+.|++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999 999999999988776666666777777765322 5788877655433 2477899999999999
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEE
Q 020829 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAF 169 (321)
Q Consensus 139 l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~ 169 (321)
++++.++|+++|+++...+.....++.+++|
T Consensus 79 ~d~~~~~l~~~G~~~~~~~~~~g~~g~r~~f 109 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEGPRPGRPGRRVAF 109 (109)
T ss_dssp HHHHHHHHHHTTECEEECEEEETGTCSEEEE
T ss_pred HHHHHHHHHHCCCEEcccCcccCCCCcEEEC
Confidence 9999999999999988765333222344443
No 150
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.39 E-value=9.4e-12 Score=95.42 Aligned_cols=116 Identities=27% Similarity=0.279 Sum_probs=84.0
Q ss_pred eeeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCC-CCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020829 60 FSFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 60 m~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
|.-.+.|..|.++|+ +||.++|||+........+ ...+.+..+. ...+ -+... +....+.+-..+.|
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG---~l~~~---~~~~p~~~~~~iy~ 77 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGG---GLMAR---PGSPPGGGGWVIYF 77 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccc---eeccC---CcCCCCCCCEEEEE
Confidence 355789999999999 9999999999987644322 2333333222 1111 11111 11112134446899
Q ss_pred EeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 135 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 135 ~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
.|+|+++..+|++++|.+++.++.+.++ .++++.+.||+||.|.|++..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999999999988875 789999999999999999753
No 151
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.37 E-value=1e-11 Score=96.39 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=71.5
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeec-----CCCCcCCCCCceEEEE
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-----GVDKYDIGTGFGHFGI 134 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~-----~~~~~~~~~g~~hl~f 134 (321)
++||+|.|+|+ +||+. |||++...... ...+.+..++ +..+.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999 99975 99998543211 1112233221 1122221110 0011112234567888
Q ss_pred EeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 135 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 135 ~v~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
.+. |+++++++|+++|+++..+|...+. +.+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 7999999999999998877766655 457889999999999997
No 152
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=1.2e-11 Score=96.33 Aligned_cols=108 Identities=23% Similarity=0.210 Sum_probs=72.4
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC-----CCCc--CCCCCceEEE
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-----VDKY--DIGTGFGHFG 133 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~-----~~~~--~~~~g~~hl~ 133 (321)
.+|+|.|+|+ +||++ |||++......+. . +.+..++ ...+.+..... .... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--A--ACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--e--EEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 6899999999 99976 9999865332221 1 2222221 22333332110 0000 1233556899
Q ss_pred EEeC---CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 134 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 134 f~v~---dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
|.|+ |+++++++++++|+++..+|...+ +++.+||.|||||.||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 9998 588899999999999988776554 3467899999999999985
No 153
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9e-12 Score=96.92 Aligned_cols=116 Identities=29% Similarity=0.401 Sum_probs=79.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-----c----CCCC
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-----Y----DIGT 127 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-----~----~~~~ 127 (321)
..+..|+.|.+++. .||...||.++....+.+..... +|+-.. ...++|..+.+..+ + ..+.
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~----~~~~ELthn~Gtes~~~~~~~ngN~~pr 114 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSR----NAKLELTHNWGTESPPDQAYLNGNKEPR 114 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecc----cCceeeecCCCCCCCcchhhcCCCCCCC
Confidence 45677777777777 77777777776555443333222 333222 23577777665422 1 2234
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|++||||.|+|+++++++|++.||++...+..- ....++|+.||||+.|||...
T Consensus 115 GfgHIci~V~di~sac~~lkekGV~f~Kk~~dG--k~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 115 GFGHICIEVDDINSACERLKEKGVRFKKKLKDG--KMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ccceEEEEeCCHHHHHHHHHHhCceeeecCCCc--cccceeEEECCCCCeEEEeec
Confidence 999999999999999999999999976655432 134689999999999999864
No 154
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.35 E-value=2.2e-11 Score=94.36 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=71.2
Q ss_pred EEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHH
Q 020829 66 IVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 141 (321)
Q Consensus 66 Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~ 141 (321)
...|.|+|+ +||++ |||++..+... . .+++..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 467899999 99999 99998765321 2 3444433 224555432211 111223478999999999
Q ss_pred HHHHHHHcCCeee-------eCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 142 TVELIKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 142 ~~~~l~~~Gv~~~-------~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++++|+++|+++. .++...++ +.+.+++.|||||.|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 9999999999853 23333333 56889999999999999874
No 155
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.34 E-value=2e-11 Score=93.51 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=73.1
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC-cCCCCCceEEEEEeCC---
Q 020829 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD--- 138 (321)
Q Consensus 67 v~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hl~f~v~d--- 138 (321)
+.|.|+|+ +||+++||+++.... ..+ +.+..++ +..+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTF--ALFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cce--EEEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 67899999 999999999986531 123 2233222 22344443322111 1223467899999986
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 139 l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+++++++++++|+++..+|...+. ++.++|.|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 888999999999999888776654 36789999999999997
No 156
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.32 E-value=3.1e-11 Score=102.76 Aligned_cols=117 Identities=20% Similarity=0.228 Sum_probs=87.4
Q ss_pred CCCCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC-ccCCCCCeeEEEE
Q 020829 186 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAI 264 (321)
Q Consensus 186 ~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~-~~~~~~~~~hlaf 264 (321)
.+..+..++|.|+|++.+..||+++||+++..+.. ..+.++.++ ...+.|.+..... +.....|+.|+||
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 45678999999999999999999999999987654 122333221 3566676644332 2345679999999
Q ss_pred EeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 265 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 265 ~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
-++ |+.....++.+.|+.+. +..++.. ...+||.||+||-||++.++
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecC
Confidence 998 57778889999998876 3333333 57899999999999999764
No 157
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.26 E-value=8.8e-11 Score=90.05 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=67.5
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHHHH
Q 020829 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 142 (321)
Q Consensus 67 v~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~~~ 142 (321)
..|.|+|+ +||++ |||++..+. .. .+++..+. ..+.+....... ..+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~--~~~l~~~~----~~l~l~~~~~~~----~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DN--LAYFRLGN----CAFYLQDYYVKD----WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CC--EEEEEcCC----EEEEeecCCCcc----cccCCEEEEEECCHHHH
Confidence 46889999 99987 999997652 11 35555431 223332211111 11234789999999999
Q ss_pred HHHHHHcCCeee-----eCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 143 VELIKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 143 ~~~l~~~Gv~~~-----~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+++|+++|+++. .++...++ +.+.+++.|||||+|++.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 999999998743 23333333 4688999999999999864
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.22 E-value=9.9e-11 Score=98.25 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCC--CceEEEEeccCCCCcceEEEeeeccCC-Cc--------cC
Q 020829 188 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV-TD--------YD 254 (321)
Q Consensus 188 ~~l~hi~L~v~--D~e~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lel~~~~~~-~~--------~~ 254 (321)
.+++||++.|+ |++++++||+++|||+.......++ .......+..+ .....++|...... .. ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 36899999999 9999999999999999876554332 22333344422 23567777654331 11 12
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCc
Q 020829 255 KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPG 288 (321)
Q Consensus 255 ~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~ 288 (321)
.++|+.|+||.|+|+++++++|+++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 4679999999999999999999999999987763
No 159
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.22 E-value=2.2e-10 Score=88.32 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=71.6
Q ss_pred EEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecC------CCCcCCCCCceEEEEEe
Q 020829 67 VVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG------VDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 67 v~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~------~~~~~~~~g~~hl~f~v 136 (321)
|.|.|+|+ +||+++|||++..+ . +. ..+++..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~--~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-S--ND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-C--CC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 78999999 99999999998655 1 11 23444432 23344433211 11111222334566665
Q ss_pred ---CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 137 ---DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 137 ---~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+|+++++++++++|+++..++...++ +++.+++.||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 57999999999999999877765554 4678999999999999974
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.17 E-value=4.7e-10 Score=82.43 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=77.8
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc---c-CCCCCeeEE--
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---Y-DKGNAYAQI-- 262 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~---~-~~~~~~~hl-- 262 (321)
.+-|+++.|.|++++++||.++||++..++.. .++.+..-+ ...+..+....+... . ..+-...|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 45799999999999999999999999865543 222222110 122233322111110 0 111123354
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCC---CCceEEEEECCCCCEEEEEecccc
Q 020829 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPG---INTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 263 af~v~dl~~~~~~l~~~G~~~~~~p~~~~~---~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
.+.++|--++.++|+++|+.+..+|.-.-. +..+.+++.||.||.+|+-.-.++
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 455789999999999999999888864321 224789999999999999655443
No 161
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.17 E-value=1.2e-09 Score=85.69 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=74.1
Q ss_pred EEEe-CChhHHHHHHHHhcCCeeecccCCC----------CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEE
Q 020829 194 MLRV-GDLDRSINFYEQAFGMELLRKRDNP----------EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 262 (321)
Q Consensus 194 ~L~v-~D~e~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hl 262 (321)
.|.+ .|.++|++||+++||+++......+ .+......+..+ +..+-+......... .+....++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4667 8999999999999999988655321 122222333322 233433332211111 12334578
Q ss_pred EEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 263 AIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 263 af~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
++.|+| +++++++|.+.| ++..+|...+++ .+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 999886 778889987766 888888888876 48999999999999973
No 162
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=81.48 Aligned_cols=115 Identities=21% Similarity=0.197 Sum_probs=75.3
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeec--cCCC----ccCCCCCeeEEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYN--YGVT----DYDKGNAYAQIA 263 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~--~~~~----~~~~~~~~~hla 263 (321)
...|.|.|+|+++|.+||+. |||+.......+.. ....... ....+-|... ..-. .....+.-.-+|
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a--~~mi~~~----ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ 76 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA--ACMIISD----NIFVMLLEEARFQTFTKRQIADTTKSREVLIS 76 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCcccccc--eeEEEec----cEEEEEeccHHhhhhcccccccccCCceEEEE
Confidence 45789999999999999977 99998665443322 1111121 1233322221 0000 012233456788
Q ss_pred EEeC---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 264 IGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 264 f~v~---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
+.+. +++++.++..++|++...+|..... .+...|.|||||.||++-.
T Consensus 77 ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 77 LSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred eccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEe
Confidence 8875 5999999999999999777654332 4667899999999999754
No 163
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=3.5e-09 Score=82.71 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=83.3
Q ss_pred EEEeC-ChhHHHHHHHHhcCCeeecccCCCC----------CceEEEEeccCCCCcceEEEeeeccCCCccCCC-CCeeE
Q 020829 194 MLRVG-DLDRSINFYEQAFGMELLRKRDNPE----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKG-NAYAQ 261 (321)
Q Consensus 194 ~L~v~-D~e~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~-~~~~h 261 (321)
-|..+ |-++|++||+++||.++..+....+ +....+.+..+ +..+-+....+......+ +...-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 46777 9999999999999999988776655 33333333332 233333322221111222 23345
Q ss_pred EEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 262 IAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 262 laf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
+.+.++|+++.++++.+.|+++..++....|+. ++..++||.|+.|-|....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~-r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGD-RYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCccc-ceEEEECCCCCEEEEecCc
Confidence 777788999999999999999999999989884 8999999999999998764
No 164
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.04 E-value=2.1e-09 Score=90.17 Aligned_cols=95 Identities=25% Similarity=0.289 Sum_probs=69.3
Q ss_pred eeceEEEEEeC--Ch----hhhhhccCCEEEEEEeCCC--CceEEEEeeeCCCCcceEEEEEeecCC--CC-------cC
Q 020829 62 FFPLIVVFPAG--DG----RFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYGV--DK-------YD 124 (321)
Q Consensus 62 ~~i~Hv~l~v~--Dl----~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~-------~~ 124 (321)
.+|+||++.|+ |+ +||+++|||+.......++ .......+..+ .....++|...... .+ ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 47999999999 99 9999999999887654433 23344445432 23455666653321 11 13
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCCc
Q 020829 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPG 158 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~ 158 (321)
.+.|+.|+||.|+|+++++++|+++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 4679999999999999999999999999887664
No 165
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.02 E-value=1.2e-09 Score=84.77 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=74.7
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc---eEEEEeccCCC--CcceEE------EeeeccCCC-ccCCC
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK---YTIAMMGYGPE--DKNVVL------ELTYNYGVT-DYDKG 256 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~l------el~~~~~~~-~~~~~ 256 (321)
+++|+.|.|+|+++|++||+++||+++.......... ........... ...... ......... .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5899999999999999999999999998765432221 11111111100 000000 000000000 00111
Q ss_pred -CCeeEEEEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 257 -NAYAQIAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 257 -~~~~hlaf~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
.+..|+++.+++ ...........|..+...+. .++ +..+|++||||+.||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246799999998 77777888888988765543 223 248999999999999974
No 166
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.91 E-value=4.4e-08 Score=90.24 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=81.0
Q ss_pred CceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc------cCCCCCeeEE
Q 020829 189 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQI 262 (321)
Q Consensus 189 ~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~------~~~~~~~~hl 262 (321)
+++||.+.|+|++++++||.+.|||+........... ....+.. ....+++........ ..+++++.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~----G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ----GQINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe----CCEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 5899999999999999999999999987652212221 2222332 145666664332211 1356789999
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 263 af~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
||.|+|++++++++.++|+++..+|.....+..+...++-+.|..+-|+++
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 999999999999999999999887754311111333455566666666654
No 167
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.87 E-value=1.7e-08 Score=74.38 Aligned_cols=113 Identities=28% Similarity=0.337 Sum_probs=72.4
Q ss_pred eceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCc----CCCCCceEEE-
Q 020829 63 FPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY----DIGTGFGHFG- 133 (321)
Q Consensus 63 ~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~----~~~~g~~hl~- 133 (321)
.+-|++|.|+|+ +||+++||++.-.+.. ..+-+.. -+...+..+......+.. ..+--..|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeee--cccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 478999999999 9999999999743321 1122221 112233333332221110 1111234544
Q ss_pred -EEeCCHHHHHHHHHHcCCeeeeCCcccC---CCCeEEEEEECCCCcEEEEEec
Q 020829 134 -IAVDDVAKTVELIKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 134 -f~v~dl~~~~~~l~~~Gv~~~~~p~~~~---~g~~~~~~~~DPdG~~iel~~~ 183 (321)
|.++|.-++.+||+++|+....+|...- .|..+.+|+.||.||-+|+-.-
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 6678999999999999998877764432 2467889999999999998754
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.84 E-value=1.1e-07 Score=78.64 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=82.6
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCC--C---C-------cCCCC
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--D---K-------YDIGT 127 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~---~-------~~~~~ 127 (321)
|+||.+.|+|+ ++|++.|||++......+..+.....+..++ . .||+....+. . . ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 69999999999 8898889999998877666444445554443 3 5776553211 1 0 02467
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeeeCCcccCCCC--eEEEEEECC----CCcEEEEEecCCC----------CCCce
Q 020829 128 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGPT----------PEPLC 191 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~--~~~~~~~DP----dG~~iel~~~~~~----------~~~l~ 191 (321)
|+.++|+.++|+++..+++++.|+... .+....++. -+.+++.++ .+..-.+++...+ ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 999999999999999999999998621 111111111 234566664 2456677744321 23699
Q ss_pred EEEEEeCChhHHHHHHHHhc
Q 020829 192 QVMLRVGDLDRSINFYEQAF 211 (321)
Q Consensus 192 hi~L~v~D~e~a~~FY~~vL 211 (321)
+|.+.++|.+++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 169
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.75 E-value=4.5e-07 Score=70.99 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=68.1
Q ss_pred EEEe-CCh----hhhhhccCCEEEEEEeC----------CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEE
Q 020829 68 VFPA-GDG----RFYTECLGMKLLRKRDI----------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 132 (321)
Q Consensus 68 ~l~v-~Dl----~FY~~vLG~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl 132 (321)
-|.+ .|. +||+++||.++...... .++....+.+.+++ ..+-+...........+ +-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g----~~l~~~d~~~~~~~~~~-~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG----QRLMASDGGPGFPFTFG-NGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC----EEEEEEcCCCCCCCCCC-CCEEE
Confidence 4566 677 99999999999876532 12223345555542 22333322211111122 33468
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020829 133 GIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 133 ~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
++.|+| +++++++|++.| ++..++...++ +.+..++.||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEe
Confidence 999986 677889987766 77777776665 45789999999999987
No 170
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=9.9e-08 Score=84.98 Aligned_cols=105 Identities=22% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 267 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~ 267 (321)
.+..||+|.|.|+++|.+||+++|++.. .. ++. ... ++ +....+-+.+. + .....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~-a~c-m~----dtI~vMllt~~-D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK-LFL-LG----KTSLYLQQTKA-E----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc-ccc-cc----CcEEEEEecCC-C----CCCcceEEEEeccC
Confidence 5678999999999999999999988874 21 111 111 11 12344434332 1 12234567888886
Q ss_pred ---CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEe
Q 020829 268 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 312 (321)
Q Consensus 268 ---dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~ 312 (321)
++|++++++.++|+....+|..+.. .--|.|||||.||++-
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 5999999999999976555443322 4568999999999984
No 171
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=1.2e-06 Score=68.42 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=79.3
Q ss_pred EEeC-Ch----hhhhhccCCEEEEEEeCCC----------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCC-CceEE
Q 020829 69 FPAG-DG----RFYTECLGMKLLRKRDIPE----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGT-GFGHF 132 (321)
Q Consensus 69 l~v~-Dl----~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~-g~~hl 132 (321)
|.++ |. +||+++||.+++.+....+ +....+-+.++. ..+-+...........++ .-..|
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g----~~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG----STIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC----EEEEEecCCCccCcccCCCeeEEE
Confidence 4555 66 9999999999999877666 455556666652 223333322221112222 22346
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
.+.++|++++++++.+.|+++..++....+ +.++..+.||.|+.|.|....+
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 788889999999999999999998888777 5688999999999999986543
No 172
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.67 E-value=7e-08 Score=74.71 Aligned_cols=118 Identities=23% Similarity=0.353 Sum_probs=71.0
Q ss_pred eeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCc---eEEEEeeeCCCCcceEEEE--------EeecCCC-CcCC
Q 020829 62 FFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEK---YTNAFLGYGPEDSHFVIEL--------TYNYGVD-KYDI 125 (321)
Q Consensus 62 ~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~l--------~~~~~~~-~~~~ 125 (321)
++++||+|.|+|+ +||+++||+++..+....... ....+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 3689999999999 999999999998875433221 1112221110000000000 0000000 0011
Q ss_pred C-CCceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEe
Q 020829 126 G-TGFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 182 (321)
Q Consensus 126 ~-~g~~hl~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 182 (321)
+ .+..|+++.+++ ...........|..+...+. .. .+..+|+.||||+++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR--GGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC--cceEEEEECCCCcEEEeeC
Confidence 1 347799999998 67777777788888765443 22 2238999999999999974
No 173
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.59 E-value=1.1e-07 Score=82.33 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC-----ccCCCCCeeEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-----DYDKGNAYAQI 262 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~-----~~~~~~~~~hl 262 (321)
.+++||.+.|.|...++.||+..|||++......+.+...+.............+.-..+++.. -..++.+.-.+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkdv 95 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDV 95 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhce
Confidence 4799999999999999999999999998865433222111111111111111111111111110 12355677889
Q ss_pred EEEeCCHHHHHHHHHHCCCeeecCCccCCCC--CceEEEEECCCCCEEEEEeccccccc
Q 020829 263 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGI--NTKITACLDPDGWKTVFVDNVDFLKE 319 (321)
Q Consensus 263 af~v~dl~~~~~~l~~~G~~~~~~p~~~~~~--~~~~~~~~DPdG~~iEl~~~~~~~~~ 319 (321)
||+|+|++++.+.+.++|+++..+|.+.... .-+++.++-+.-...-+++++..+.+
T Consensus 96 afeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 96 AFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred EEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 9999999999999999999999998766433 23777888887677777777665543
No 174
>PRK10148 hypothetical protein; Provisional
Probab=98.54 E-value=5.3e-06 Score=66.50 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=74.5
Q ss_pred EEEeC-ChhHHHHHHHHhcCCeeecccCC--------------------CCCceEEEEeccCCCCcceEEEeeeccCCCc
Q 020829 194 MLRVG-DLDRSINFYEQAFGMELLRKRDN--------------------PEYKYTIAMMGYGPEDKNVVLELTYNYGVTD 252 (321)
Q Consensus 194 ~L~v~-D~e~a~~FY~~vLG~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~ 252 (321)
-|... |-++|++||+++||.++.....+ +++......+..+ +..+-+.. .....
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD-~~~~~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSD-AIPSG 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEEC-CCCCc
Confidence 45564 89999999999999887644311 0122223333322 22232221 11111
Q ss_pred cCCCCCeeEEEEEeCCHHH---HHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEeccccc
Q 020829 253 YDKGNAYAQIAIGTDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 317 (321)
Q Consensus 253 ~~~~~~~~hlaf~v~dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~ 317 (321)
.......++++.++|.++ ++++| +.|+++..++.+.+++. ++..++||.|+.|.|...+..+
T Consensus 81 -~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~-~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 -KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAH-GFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred -CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhh-ccEEEECCCCCEEEEEecCCCC
Confidence 111124578888888766 66666 58889999998888874 8899999999999998875543
No 175
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.50 E-value=4.5e-06 Score=62.50 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=60.0
Q ss_pred eEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCCHH
Q 020829 65 LIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 140 (321)
Q Consensus 65 ~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~dl~ 140 (321)
.+-+|.|+|- +||+++|||++..... .+++++.......+.++-++............++++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 4668999998 9999999999987642 35667653322233444333222223344457889999999987
Q ss_pred HHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 141 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 141 ~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+ ++.|.++|.++.. -..+..+..+-..+|+|+.+.+....
T Consensus 76 E-Ie~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 E-IEALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp H-HHHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred H-HHHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcC
Confidence 7 4566677766422 22222345455779999999998653
No 176
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.24 E-value=2.9e-05 Score=58.19 Aligned_cols=114 Identities=22% Similarity=0.335 Sum_probs=63.4
Q ss_pred eEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCC--ccCCCCCeeEEEEEeCC
Q 020829 191 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDD 268 (321)
Q Consensus 191 ~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~~~~~~hlaf~v~d 268 (321)
.+-+|.|.|-+..++||++.|||++..+.. .++.++.. .....+.|-+.++.. .......+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 466899999999999999999999986543 35556643 234444444433322 22333478899999988
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
..++. .|.++|.++.. -..+-.|+.+-..+|+|+.|.+....+.
T Consensus 74 ~~EIe-~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 74 PKEIE-ALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HHHHH-HHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HHHHH-HHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcCCH
Confidence 55543 34445555321 1223336778889999999999876543
No 177
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.18 E-value=2e-05 Score=59.33 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=68.1
Q ss_pred ceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEee-c------CCCCcCCCCCceEE
Q 020829 64 PLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN-Y------GVDKYDIGTGFGHF 132 (321)
Q Consensus 64 i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~-~------~~~~~~~~~g~~hl 132 (321)
.-.|.|.|+|+ +||+. |||+.-..... .. ....+-.+ ... ..-|... . .......+ .-.-+
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sd--e~-a~~mi~~~--ni~-vMLL~~~~fq~F~~~~i~dt~~s-~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSD--ED-AACMIISD--NIF-VMLLEEARFQTFTKRQIADTTKS-REVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCccc--cc-ceeEEEec--cEE-EEEeccHHhhhhcccccccccCC-ceEEE
Confidence 45799999999 99976 99998554322 21 22222211 211 1222211 0 00111111 22246
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCC
Q 020829 133 GIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 185 (321)
Q Consensus 133 ~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 185 (321)
|+.+.+ ++++.++..++|.+...++...+ .-...-|.|||||.||+..-.+
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeCH
Confidence 777764 88899999999999977766543 2334578999999999987543
No 178
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.14 E-value=8.4e-05 Score=68.72 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=83.6
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc--eEEEEeccCCCCcceEEEeeeccCC-----------------
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK--YTIAMMGYGPEDKNVVLELTYNYGV----------------- 250 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lel~~~~~~----------------- 250 (321)
++||.+.|.|..++..||+..|||+.+.......+. .....++.+ ...+.+.....+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 689999999999999999999999987655432221 222223311 233333322101
Q ss_pred --Cc------cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCC----CCceEEEEECCCCCEEEEEeccc
Q 020829 251 --TD------YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPG----INTKITACLDPDGWKTVFVDNVD 315 (321)
Q Consensus 251 --~~------~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~----~~~~~~~~~DPdG~~iEl~~~~~ 315 (321)
.. ..+|++..-+||.|+|++++++++.++|++...+|..... +.-....+.-++|..+-|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~ 153 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKG 153 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCC
Confidence 00 1356788899999999999999999999999888765422 11245568888888888888653
No 179
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.88 E-value=3e-05 Score=64.09 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=50.4
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCC-C-ceEEEEeccCCCCcceEEEeeeccCCCcc------------CC
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-Y-KYTIAMMGYGPEDKNVVLELTYNYGVTDY------------DK 255 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~lel~~~~~~~~~------------~~ 255 (321)
|+|+.+.|+|++++.++|++.|||.+......+. + .-.++.++ ...||+....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 6999999999999999998889999986655443 2 22444554 237777653221110 13
Q ss_pred CCCeeEEEEEeCCHHHHHHHHHHCCCe
Q 020829 256 GNAYAQIAIGTDDVYKTAEAIKLFGGK 282 (321)
Q Consensus 256 ~~~~~hlaf~v~dl~~~~~~l~~~G~~ 282 (321)
+.++.++|+.++|+++..+++++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 568889999999999999999999986
No 180
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.88 E-value=0.00016 Score=56.87 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCc----cCCCCCeeEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~----~~~~~~~~hla 263 (321)
..+++|.+.++|.+++..+++ .|||+...+.... ...++.-+ ...+.+....+... ..+|++..-++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--DVTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--SEEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--ceEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 468999999999888888885 6999998765432 23333222 34444443222110 14578899999
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
|.|+|..++++++.+.|++...+|.. ++ .-...-++-+.|-++-|+++.+.
T Consensus 79 frV~Da~~A~~rA~~~GA~~~~~~~~-~~-e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 79 FRVDDAAAAYERAVALGAEPVQEPTG-PG-ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEES-HHHHHHHHHHTT--EEEEEEE-TT--BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEeCCHHHHHHHHHHcCCcCcccCCC-CC-cEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999999998876532 22 23667899999999999998643
No 181
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=97.86 E-value=9.9e-05 Score=66.12 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=66.6
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEe
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 136 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v 136 (321)
..+.-||+|.|+|+ +||+++||+.. ..++.. .+ + ++ . -+.+-+... +. + ...-.-+|+.+
T Consensus 245 ~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-----Fsde~a-~c-m--~d-t-I~vMllt~~-D~---~-~~~evLl~Ls~ 308 (357)
T PRK01037 245 SPKTFSVVLEVQDLRRAKKFYSKMFGLEC-----WDGDKL-FL-L--GK-T-SLYLQQTKA-EK---K-NRGTTTLSLEL 308 (357)
T ss_pred CCceEEEEeeeCCHHHHHHHHHHHhCCCC-----CCCCcc-cc-c--cC-c-EEEEEecCC-CC---C-CcceEEEEecc
Confidence 56778999999999 99999988873 222221 11 1 21 1 122222222 11 1 12223478888
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEec
Q 020829 137 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 183 (321)
Q Consensus 137 ~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 183 (321)
++ +|++.++..++|.+...++.+++. .--|.||||+.||++..
T Consensus 309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 309 ECEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 75 888999999999977665555432 34589999999999864
No 182
>PRK10148 hypothetical protein; Provisional
Probab=97.79 E-value=0.0026 Score=50.94 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=66.4
Q ss_pred hhhhhccCCEEEEEEe---C-----------------CCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEE
Q 020829 75 RFYTECLGMKLLRKRD---I-----------------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 134 (321)
Q Consensus 75 ~FY~~vLG~~~~~~~~---~-----------------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f 134 (321)
+||+++||-++..... . +++....+-|.+++ ..+-+..... .....+++ .++++
T Consensus 18 ~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g----~~lm~sD~~~-~~~~~~~~-~~l~l 91 (147)
T PRK10148 18 AYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG----SDIMMSDAIP-SGKAHYSG-FTLVL 91 (147)
T ss_pred HHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC----EEEEEECCCC-CcCCCCCe-EEEEE
Confidence 9999999999875531 1 12334445555542 1233322111 11112223 36788
Q ss_pred EeCCHHH---HHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCC
Q 020829 135 AVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 187 (321)
Q Consensus 135 ~v~dl~~---~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 187 (321)
.++|.++ ++++| +.|.++..++....+ +.++..+.||.|+.|.|......|
T Consensus 92 ~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 92 DTQDVEEGKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred ECCCHHHHHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCCC
Confidence 8888776 66666 578999888877776 457889999999999998765444
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.79 E-value=0.00068 Score=53.36 Aligned_cols=115 Identities=20% Similarity=0.182 Sum_probs=73.9
Q ss_pred eeeceEEEEEeCCh----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCC----cCCCCCceEE
Q 020829 61 SFFPLIVVFPAGDG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK----YDIGTGFGHF 132 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hl 132 (321)
...++||.+.++|. .++ ..|||+.+.+.... .+..+.-| . ..+-+....+... ..+|.++..+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk----~v~l~rQG--~--I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLF-TALGFQPVARHRSK----DVTLYRQG--D--INFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCC----SEEEEEET--T--EEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHH-HHhCcceEEecCCc----ceEEEEeC--C--EEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 46799999999999 555 57999998764321 22333433 2 2333333222211 2468899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCC
Q 020829 133 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 186 (321)
Q Consensus 133 ~f~v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 186 (321)
+|.|+|.++++++..++|.+...+|.. .+.-.+.-++.+.|.++.|+++...
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~--~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTG--PGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEE--TT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCC--CCcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999998776543 2345677788999999999987543
No 184
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.71 E-value=7.4e-05 Score=66.42 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=67.3
Q ss_pred eeeceEEEEEeCCh------hhhhhccCCEEEEEEeCCCCc---eEEEEeeeCCCCcceEEEEEeecCCCC-------cC
Q 020829 61 SFFPLIVVFPAGDG------RFYTECLGMKLLRKRDIPEEK---YTNAFLGYGPEDSHFVIELTYNYGVDK-------YD 124 (321)
Q Consensus 61 ~~~i~Hv~l~v~Dl------~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~l~~~~~~~~-------~~ 124 (321)
..+|+|++..|.-- .||+++|||+.......++.. ..-++.+ +.+ ...+.|....+..+ .-
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S--p~G-~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS--PCG-KVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec--CCC-cEEeecccCCCchhHHHHHHHHh
Confidence 45899999999843 999999999998876655432 1223222 222 34566655433222 24
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeeeCC
Q 020829 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP 157 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~~~p 157 (321)
.|.|+.|++|.++|+-++.++++++|++....|
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 678999999999999999999999999987655
No 185
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.21 E-value=0.016 Score=42.61 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=43.6
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeC--
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 267 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~-- 267 (321)
+..|.|+|+| +++.+||.++||-... ..+.+.... +..+.+ +....-.+..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~----G~DL~~-------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQ----GPDLTI-------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS--------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeecc----CCcccc-------CCCcEEeeEEEEEEecCc
Confidence 5678999999 8899999998873321 011111110 000000 1122236778889998
Q ss_pred -CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020829 268 -DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 268 -dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
|+.++.+++.+.++ -.+ -. .+.+.+.||+|..|.+
T Consensus 65 ~Dl~~L~~~le~~~~--fid-----Kk-~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FID-----KK-EKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E-------TT--SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--Eec-----CC-ceEEEEECCcceEEEe
Confidence 68888888887443 222 11 4789999999988876
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.93 E-value=0.22 Score=38.02 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHhcCCee-ecccCCC------CCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCC--
Q 020829 198 GDLDRSINFYEQAFGMEL-LRKRDNP------EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 268 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~d-- 268 (321)
.+-++|.+||.++||-.. ......+ .+......+..+ +..+-... .. .....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D-~~-~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASD-GG-PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEE-ES-TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEEC-CC-CCCCCCCc-EEEEEEcCCHH
Confidence 689999999999999432 2222221 112222223321 22232222 11 12223333 578888876
Q ss_pred -HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEE
Q 020829 269 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 311 (321)
Q Consensus 269 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~ 311 (321)
++.++++|.+.|- +. +....+.|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WF-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TC-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------cc-ceeEEEEeCCCCEEEeC
Confidence 5667788888774 22 37789999999999885
No 187
>PF15067 FAM124: FAM124 family
Probab=95.33 E-value=0.38 Score=40.83 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=71.2
Q ss_pred EEECCCCcEEEEEecCCCCCCceEEEEEeC--ChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeee
Q 020829 169 FIEDPDGYKFELLERGPTPEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY 246 (321)
Q Consensus 169 ~~~DPdG~~iel~~~~~~~~~l~hi~L~v~--D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~ 246 (321)
|-.+|.==+|.+-+. --..-+-.++|.|+ |.+.+++||+-+|+-+...... ++-.+.+-. . .+..+.+..
T Consensus 109 ysl~~~~PlWavr~V-H~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~lys-~--~~~~iQlsL 180 (236)
T PF15067_consen 109 YSLDPGMPLWAVRQV-HYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTLYS-Q--PGLDIQLSL 180 (236)
T ss_pred eecCCCCceeEEeee-eccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEEec-C--CCeEEEEEe
Confidence 444553334444322 22456788899999 9999999999999988754332 233333322 1 145555543
Q ss_pred ccCCCc-cCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEE
Q 020829 247 NYGVTD-YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 247 ~~~~~~-~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
..-+.. ...+....-+.|.|.|+-+++..|-.--. |-+. ..-...|||||.|-|
T Consensus 181 K~lp~~~~p~p~esavLqF~V~~igqLvpLLPnpc~---------PIS~-~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 181 KQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNPCS---------PISE-TRWQTEDYDGNKILL 235 (236)
T ss_pred ccCCCCCCcccccceEEEEEecchhhhcccCCCCcc---------cccC-CcceeeCCCCCEecc
Confidence 222111 12223446799999999887655432211 2221 224579999999843
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=94.74 E-value=0.88 Score=34.70 Aligned_cols=89 Identities=19% Similarity=0.348 Sum_probs=48.5
Q ss_pred hhhhhccCCE-EEEEEeCCC------CceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeCC---HHHHHH
Q 020829 75 RFYTECLGMK-LLRKRDIPE------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD---VAKTVE 144 (321)
Q Consensus 75 ~FY~~vLG~~-~~~~~~~~~------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~d---l~~~~~ 144 (321)
+||.++||-. +......++ +....+.+.+++ ..+-..... +....++++ .+++.++| ++++++
T Consensus 18 ~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~~~~-sl~i~~~~~ee~~~~f~ 90 (116)
T PF06983_consen 18 EFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFGNNI-SLCIECDDEEEIDRIFD 90 (116)
T ss_dssp HHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS----TTE-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCCCcE-EEEEEcCCHHHHHHHHH
Confidence 9999999853 333222221 223344455432 122222221 333344454 68888887 555788
Q ss_pred HHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEE
Q 020829 145 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 181 (321)
Q Consensus 145 ~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 181 (321)
+|.+.|- +. . .+.++.|..|..|.|+
T Consensus 91 ~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 91 KLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 8877664 22 3 7889999999999885
No 189
>PF15067 FAM124: FAM124 family
Probab=90.06 E-value=2.5 Score=35.98 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=56.2
Q ss_pred eceEEEEEeC--Ch----hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCc-CCCCCceEEEEE
Q 020829 63 FPLIVVFPAG--DG----RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY-DIGTGFGHFGIA 135 (321)
Q Consensus 63 ~i~Hv~l~v~--Dl----~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~-~~~~g~~hl~f~ 135 (321)
.+--++|.|+ |. +||+-+|+-+......+ + .+|.-+. ..++.+.++...-+... .....-.-+.|.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~----F-C~F~lys--~~~~~iQlsLK~lp~~~~p~p~esavLqF~ 200 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKED----F-CFFTLYS--QPGLDIQLSLKQLPPGMSPEPTESAVLQFR 200 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC----c-EEEEEec--CCCeEEEEEeccCCCCCCcccccceEEEEE
Confidence 6677899999 66 99999999988655321 2 1222222 22444555442211111 111122258999
Q ss_pred eCCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEE
Q 020829 136 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 180 (321)
Q Consensus 136 v~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel 180 (321)
|.|+.++..-|-. .+. ++ +.++ -...|||||.|-|
T Consensus 201 V~~igqLvpLLPn-pc~------PI--S~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 201 VEDIGQLVPLLPN-PCS------PI--SETR-WQTEDYDGNKILL 235 (236)
T ss_pred ecchhhhcccCCC-Ccc------cc--cCCc-ceeeCCCCCEecc
Confidence 9999887654421 111 11 1122 4579999998854
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=86.75 E-value=2.7 Score=31.05 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=40.1
Q ss_pred eceEEEEEeCCh---hhhhhccCCEEEEEEeCCCCceEEEEeeeCCCCcceEEEEEeecCCCCcCCCCCceEEEEEeC--
Q 020829 63 FPLIVVFPAGDG---RFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD-- 137 (321)
Q Consensus 63 ~i~Hv~l~v~Dl---~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hl~f~v~-- 137 (321)
.+.-|.|+|+|. +||+++||-++ + ..+.+.... +....+ .....=++.-+-|.|+
T Consensus 5 ~~e~i~LNV~d~~~~~fy~~~f~~~~------~---~~l~f~ea~--G~DL~~---------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 5 EFESIELNVPDAKSQSFYQSIFGGQL------P---FFLTFQEAQ--GPDLTI---------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp EE-EEEEEE-T-T---S--H---HHH------T---TTEEEEE-----CCGSS----------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEEeCCChhHHHHHHhccccCC------C---ceEEEeecc--CCcccc---------CCCcEEeeEEEEEEecCc
Confidence 467789999996 99999886221 0 111221100 000000 0011125556778898
Q ss_pred -CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEE
Q 020829 138 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 179 (321)
Q Consensus 138 -dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~ie 179 (321)
|+.++.+++.+.++-+ + ...+++.+.||+|+-+-
T Consensus 65 ~Dl~~L~~~le~~~~fi---d-----Kk~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 65 FDLAALKSHLEEQEFFI---D-----KKEKFLVTSDPSQIELW 99 (101)
T ss_dssp --HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEE
T ss_pred ccHHHHHHHhcccceEe---c-----CCceEEEEECCcceEEE
Confidence 5888888888744322 1 24577889999998653
No 191
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=68.93 E-value=23 Score=26.95 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecCCCCCCceEEEEEeCChhHHHHHHHHhcCCeeecc
Q 020829 139 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRK 218 (321)
Q Consensus 139 l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~ 218 (321)
+..+.+.|+++|+.+.. +-+.| .+.++-+.+.|++.+.|.+-.++ -||.+...
T Consensus 17 L~~~~~~L~eagINiRA------------~tiAd--------------t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIRA------------FTIAD--------------TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceEE------------EEecc--------------ccCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 77889999999987621 11112 34466677888999999988877 78877532
Q ss_pred cCCCCCceEEEEeccCCC----------CcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHHHHHHHHHCCCeeec
Q 020829 219 RDNPEYKYTIAMMGYGPE----------DKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTR 285 (321)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~----------~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~~~~~l~~~G~~~~~ 285 (321)
.. ..+-+...+. +....++..+. +.....-.-+-++|+|+|++.+.|+++|+.+..
T Consensus 70 dV------laVEmeD~PG~l~~I~~vl~d~diNldYiYA-----Fv~ek~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 70 DV------LAVEMEDVPGGLSRIAEVLGDADINLDYIYA-----FVTEKQKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred eE------EEEEecCCCCcHHHHHHHHhhcCcCceeeee-----eeecCceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 21 0111111000 00111111110 011113356788899999999999999998764
No 192
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=67.62 E-value=15 Score=25.89 Aligned_cols=45 Identities=13% Similarity=-0.014 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
..+++.+.+++.|.++.. ......+ .+.+...|.||+.+|+.=.+
T Consensus 30 ~~~~~~~~l~~~G~~v~~-ve~~~~g-~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE-VEFDDDG-CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEE-EEEcCCC-EEEEEEEECCCCEEEEEEcC
Confidence 689999999999996543 2221222 47788999999999997543
No 193
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=66.47 E-value=23 Score=24.88 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEEEEEecC
Q 020829 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 184 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 184 (321)
+.+++.+.+++.|+.+..-. ...++..-+...|.||+.+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve--~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVE--FDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEE--EcCCCEEEEEEEECCCCEEEEEEcC
Confidence 68899999999999765432 2123456678899999999998653
No 194
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=53.09 E-value=96 Score=25.71 Aligned_cols=78 Identities=10% Similarity=0.042 Sum_probs=39.2
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc-eEEEEeccC---CCCcceEEEeeeccCCCccCCCCCeeEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYG---PEDKNVVLELTYNYGVTDYDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~lel~~~~~~~~~~~~~~~~hla 263 (321)
-.+|||+++|.+.+.|.+|-+..+-.-..-....-+|+ ..++.+.-+ .+.....+||.++.+ ...+..|.-|+-
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp~eGWEHIE 110 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYPQEGWEHIE 110 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--SS-EEEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCCCCCceEEE
Confidence 35799999999999999999887765433222211222 122222211 112245566665433 222345888999
Q ss_pred EEeC
Q 020829 264 IGTD 267 (321)
Q Consensus 264 f~v~ 267 (321)
|.++
T Consensus 111 ~Vip 114 (185)
T PF06185_consen 111 FVIP 114 (185)
T ss_dssp EE--
T ss_pred EEec
Confidence 9985
No 195
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=51.52 E-value=6.1 Score=24.30 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcC
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFG 212 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG 212 (321)
+.++..++.+++++++.+||+..|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 4567777888999999999998663
No 196
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.85 E-value=38 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCee
Q 020829 258 AYAQIAIGTDDVYKTAEAIKLFGGKV 283 (321)
Q Consensus 258 ~~~hlaf~v~dl~~~~~~l~~~G~~~ 283 (321)
+...+.+.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678899999999999999999875
No 197
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=48.90 E-value=40 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred CCCCeeEEEEEe------CCHHHHHHHHHHCCCeee
Q 020829 255 KGNAYAQIAIGT------DDVYKTAEAIKLFGGKVT 284 (321)
Q Consensus 255 ~~~~~~hlaf~v------~dl~~~~~~l~~~G~~~~ 284 (321)
.|..++|+...| .||+++.+.++++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 567899999999 999999999999999876
No 198
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.19 E-value=44 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCee
Q 020829 128 GFGHFGIAVDDVAKTVELIKAKGGKV 153 (321)
Q Consensus 128 g~~hl~f~v~dl~~~~~~l~~~Gv~~ 153 (321)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44568899999999999999999875
No 199
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.69 E-value=37 Score=25.85 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=51.3
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeeeC------CcccCCCCeEEE-EEECCCCcEEEEEecCCCCCCceEEEEEeCChhHH
Q 020829 131 HFGIAVDDVAKTVELIKAKGGKVTRE------PGPVKGGNTVIA-FIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRS 203 (321)
Q Consensus 131 hl~f~v~dl~~~~~~l~~~Gv~~~~~------p~~~~~g~~~~~-~~~DPdG~~iel~~~~~~~~~l~hi~L~v~D~e~a 203 (321)
-+-+-|++-+++++.|+++|..+... -.+.|+|-.+++ .+.|-|=|+=-++.-.. ...=.-+.++|.|++++
T Consensus 44 IiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~-ek~KAlli~r~ed~d~~ 122 (142)
T COG4747 44 IIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVT-EKQKALLIVRVEDIDRA 122 (142)
T ss_pred eEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeee-cCceEEEEEEhhHHHHH
Confidence 35677899999999999999776331 122333222333 23454444333332211 11333466788999999
Q ss_pred HHHHHHhcCCeeec
Q 020829 204 INFYEQAFGMELLR 217 (321)
Q Consensus 204 ~~FY~~vLG~~~~~ 217 (321)
+.-.++ .|.+...
T Consensus 123 ~~aLed-~gi~~~~ 135 (142)
T COG4747 123 IKALED-AGIKLIG 135 (142)
T ss_pred HHHHHH-cCCeecC
Confidence 999988 7877653
No 200
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.62 E-value=63 Score=22.24 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCC-CceEEEEECCCCCEE
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKT 308 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~i 308 (321)
+-++.+.+.++|+.+...-....+. .-..||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 6778899999999987553333332 125789999999876
No 201
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=46.00 E-value=44 Score=30.08 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHHcCCeee
Q 020829 125 IGTGFGHFGIAV------DDVAKTVELIKAKGGKVT 154 (321)
Q Consensus 125 ~~~g~~hl~f~v------~dl~~~~~~l~~~Gv~~~ 154 (321)
.|..++|+...| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 345799999999 999999999999999887
No 202
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.79 E-value=54 Score=21.75 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=21.9
Q ss_pred CeeEEEEEe--CCHHHHHHHHHHCCCeeecC
Q 020829 258 AYAQIAIGT--DDVYKTAEAIKLFGGKVTRE 286 (321)
Q Consensus 258 ~~~hlaf~v--~dl~~~~~~l~~~G~~~~~~ 286 (321)
+...+.|.+ +|.+.+.+.|+++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344455555 48889999999999998764
No 203
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.18 E-value=1.6e+02 Score=23.41 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=46.1
Q ss_pred ceEEEEEeCCH---HHHHHHHHHcCCeeeeCCcccCCCCeEEEEEE--CC---CCcEEEEEecCCC------CCCceEEE
Q 020829 129 FGHFGIAVDDV---AKTVELIKAKGGKVTREPGPVKGGNTVIAFIE--DP---DGYKFELLERGPT------PEPLCQVM 194 (321)
Q Consensus 129 ~~hl~f~v~dl---~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~--DP---dG~~iel~~~~~~------~~~l~hi~ 194 (321)
+.|+|++|.+. +.+.+.+.+.|--+.... . +|..++.|. -| .|..|+.++-.-+ ..+..||.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~--I--NGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENE--I--NGRPIALIKLEKPLQFAGWSISIVELPFPKDKKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccc--c--CCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEE
Confidence 35999999974 447777777775443221 1 133333332 33 5778888875432 35799999
Q ss_pred EEeCC-hhHHHHHHHH
Q 020829 195 LRVGD-LDRSINFYEQ 209 (321)
Q Consensus 195 L~v~D-~e~a~~FY~~ 209 (321)
++++- .+.+..+-..
T Consensus 78 ~Vlp~~~~~~~~~~~~ 93 (149)
T cd07268 78 IVIPSPPQESIELRAP 93 (149)
T ss_pred EEecCCcchHHHHHHH
Confidence 99984 3334444433
No 204
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.15 E-value=66 Score=27.43 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHhcCCeeecccCCCCCceEEEEecc
Q 020829 198 GDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGY 233 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~ 233 (321)
.|+.+++.||.+.||+++..-. +....+++...
T Consensus 145 a~~~e~a~wy~dyLGleie~~h---gevikfiFTnI 177 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNI 177 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc---CceEEEEEecc
Confidence 5888999999999999985432 22344444443
No 205
>PRK11700 hypothetical protein; Provisional
Probab=41.46 E-value=2.1e+02 Score=23.81 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=46.5
Q ss_pred ceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEE--CC---CCcEEEEEecCCC------CCCceEEE
Q 020829 129 FGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIE--DP---DGYKFELLERGPT------PEPLCQVM 194 (321)
Q Consensus 129 ~~hl~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~--DP---dG~~iel~~~~~~------~~~l~hi~ 194 (321)
+.|++++|.+ .+.+.+.+.+.|--+.... . +|+.++.|. -| .|..|+.++-.-+ ..+..||.
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~--I--NGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k~Yp~eGWEHIE 115 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENI--I--NGRPICLFELDQPLQVGHWSIDCVELPYPGEKRYPHEGWEHIE 115 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccc--c--CCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCCCCCCceEEE
Confidence 4599999997 4557777777775443221 1 133333332 33 5778888885432 35789999
Q ss_pred EEeC-ChhHHHHHHHH
Q 020829 195 LRVG-DLDRSINFYEQ 209 (321)
Q Consensus 195 L~v~-D~e~a~~FY~~ 209 (321)
++++ +.+...++-..
T Consensus 116 lVlp~~~~t~~~~~~a 131 (187)
T PRK11700 116 LVLPGDPETLDARALA 131 (187)
T ss_pred EEecCCcchHHHHHHH
Confidence 9998 44444444333
No 206
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=42 Score=29.90 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCC---CCEEEEEecccccc
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPD---GWKTVFVDNVDFLK 318 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPd---G~~iEl~~~~~~~~ 318 (321)
.|++.+.+.|++.|+.-...-.....-.|.++...+++ |.++|+....+|..
T Consensus 32 Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDFVA 86 (296)
T COG0264 32 GDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDFVA 86 (296)
T ss_pred CCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccccee
Confidence 48999999999999864433222222235777888888 78899999999865
No 207
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=36.78 E-value=69 Score=23.77 Aligned_cols=37 Identities=11% Similarity=-0.036 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccccc
Q 020829 270 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLK 318 (321)
Q Consensus 270 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~ 318 (321)
.++.+.|+++|++ .+++|+.+|..+++-..+..++..
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d~~a 63 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYEDFEA 63 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcChHH
Confidence 5567778888864 478899999999998888775544
No 208
>PRK11700 hypothetical protein; Provisional
Probab=36.35 E-value=2.5e+02 Score=23.32 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=44.3
Q ss_pred CCceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc-eEEEEeccCC---CCcceEEEeeeccCCCccCCCCCeeEEE
Q 020829 188 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGP---EDKNVVLELTYNYGVTDYDKGNAYAQIA 263 (321)
Q Consensus 188 ~~l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~lel~~~~~~~~~~~~~~~~hla 263 (321)
-.+|||.|+|.+.+.|.+|-...+-.-..-....-+|+ ..++.+.-+- .....-+||.++.+ ...+..|.-|+-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEE
Confidence 46899999999999999998876644322222111222 2222222111 12235556665332 223345788999
Q ss_pred EEeC
Q 020829 264 IGTD 267 (321)
Q Consensus 264 f~v~ 267 (321)
+.++
T Consensus 116 lVlp 119 (187)
T PRK11700 116 LVLP 119 (187)
T ss_pred EEec
Confidence 9886
No 209
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.15 E-value=2.5e+02 Score=22.37 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=43.2
Q ss_pred ceEEEEEeCChhHHHHHHHHhcCCeeecccCCCCCc-eEEEEeccCC---CCcceEEEeeeccCCCccCCCCCeeEEEEE
Q 020829 190 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGP---EDKNVVLELTYNYGVTDYDKGNAYAQIAIG 265 (321)
Q Consensus 190 l~hi~L~v~D~e~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~lel~~~~~~~~~~~~~~~~hlaf~ 265 (321)
+|||.|+|.+.+.|.+|.+..+-.-..-....-+|+ ..++.+.-+- .....-+||.++.+ ...+..|.-|+-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEEE
Confidence 689999999999999999887654332222211222 2222222111 12234556655322 22344588899998
Q ss_pred eC
Q 020829 266 TD 267 (321)
Q Consensus 266 v~ 267 (321)
++
T Consensus 80 lp 81 (149)
T cd07268 80 IP 81 (149)
T ss_pred ec
Confidence 85
No 210
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.08 E-value=2.5e+02 Score=22.31 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=29.3
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEec
Q 020829 262 IAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 313 (321)
Q Consensus 262 laf~v~d---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~ 313 (321)
+-+.++| +|.+...|...|.+ . ....+++|-.|..|.|+-+
T Consensus 81 ~~v~~~~q~E~Drlwnal~~~g~e---------~--~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 81 FQVACDDQEEIDRLWNALSDNGGE---------A--EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEcCCHHHHHHHHHHHhccCcc---------h--hcceeEecccCcEEEEcHH
Confidence 3344554 78888888888862 1 2556899999999998743
No 211
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=31.92 E-value=71 Score=26.85 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCC---CEEEEEecccccc
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDG---WKTVFVDNVDFLK 318 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG---~~iEl~~~~~~~~ 318 (321)
.|++.+.+.|++.|..............|.......|+| .++|+....+|..
T Consensus 31 gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa 85 (198)
T PRK12332 31 GDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVA 85 (198)
T ss_pred CCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCccc
Confidence 489999999999997654332222222245555555554 5677777878854
No 212
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=31.66 E-value=2.4e+02 Score=23.44 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=41.8
Q ss_pred CceEEEEEeCC---HHHHHHHHHHcCCeeeeCCcccCCCCeEEEEE--ECC---CCcEEEEEecCC------CCCCceEE
Q 020829 128 GFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDP---DGYKFELLERGP------TPEPLCQV 193 (321)
Q Consensus 128 g~~hl~f~v~d---l~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~--~DP---dG~~iel~~~~~------~~~~l~hi 193 (321)
-+.|+|++|.+ .+.+.+.+.+.| ++..+-. . +|+.++.| ..| .|..|++++-.- +..+..||
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G-~llSen~-I--NGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K~Yp~eGWEHI 109 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCG-ELLSENM-I--NGRPICLFKLNQPLQFGGWSIDCVELPYPKDKRYPQEGWEHI 109 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTE-EEEEEEE-E--TTEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS-EEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhC-hhhhhce-e--CCeeEEEEEcCCchhcCCeeEEEEEeCCCCCCCCCCCCceEE
Confidence 35699999997 444667777777 4443321 2 13333332 233 577888887542 23568999
Q ss_pred EEEeCChhHHHHHHHH
Q 020829 194 MLRVGDLDRSINFYEQ 209 (321)
Q Consensus 194 ~L~v~D~e~a~~FY~~ 209 (321)
.++++-...+ +..+
T Consensus 110 E~Vip~~~~~--~~~~ 123 (185)
T PF06185_consen 110 EFVIPSDAQT--LLEQ 123 (185)
T ss_dssp EEE--S-GGG--HHHH
T ss_pred EEEecCCHHH--HHHH
Confidence 9999865544 4444
No 213
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=30.91 E-value=67 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEEC-CCCCEEEEEeccccccc
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLD-PDGWKTVFVDNVDFLKE 319 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~D-PdG~~iEl~~~~~~~~~ 319 (321)
.|++.+.+.|++.|..............|......| --|.++||...++|..+
T Consensus 31 gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVAr 84 (290)
T TIGR00116 31 GDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVAK 84 (290)
T ss_pred CCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCccccC
Confidence 489999999999997654332222222234443433 44889999999998754
No 214
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=30.65 E-value=2.3e+02 Score=22.88 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=35.8
Q ss_pred CeeEEEEEeCCHHHHHHHHHHCCCee--ecCCcc------------CCC-----CCceEEEEECCCCCEEEEEecccc
Q 020829 258 AYAQIAIGTDDVYKTAEAIKLFGGKV--TREPGP------------LPG-----INTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 258 ~~~hlaf~v~dl~~~~~~l~~~G~~~--~~~p~~------------~~~-----~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
+...+++++++..+..+-..++|.++ .+++.. ..+ +..|..|+.|+||.+.........
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCC
Confidence 45567777777777666666666653 222210 011 124788999999999888744333
No 215
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.51 E-value=1.4e+02 Score=20.71 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCeeecCCccCCCC-CceEEEEECCCCCEEE
Q 020829 269 VYKTAEAIKLFGGKVTREPGPLPGI-NTKITACLDPDGWKTV 309 (321)
Q Consensus 269 l~~~~~~l~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~iE 309 (321)
+-.+...|.+.|+.+...--...+. .--.+|++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 6677888999999977543322221 1257899999999873
No 216
>PTZ00056 glutathione peroxidase; Provisional
Probab=30.39 E-value=1.8e+02 Score=24.28 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=14.2
Q ss_pred EEEEECCCCCEEEEEec
Q 020829 297 ITACLDPDGWKTVFVDN 313 (321)
Q Consensus 297 ~~~~~DPdG~~iEl~~~ 313 (321)
..|+.|++|..+.....
T Consensus 147 ~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFSP 163 (199)
T ss_pred EEEEECCCCcEEEEeCC
Confidence 58999999999977654
No 217
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=29.73 E-value=99 Score=20.03 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecccc
Q 020829 268 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 316 (321)
Q Consensus 268 dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 316 (321)
++++..++...+|-.+... +. ...+-..+|||.++-|++..+-
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~-----~~-~g~~aa~~pdG~lvAL~~~~g~ 47 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAA-----GP-PGPVAAFAPDGRLVALLEERGG 47 (56)
T ss_dssp E--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEETT
T ss_pred ECCHHHHHHHhCCCccCCC-----CC-CceEEEECCCCcEEEEEEccCC
Confidence 4666677777888765432 11 2346689999999999977543
No 218
>PRK09750 hypothetical protein; Provisional
Probab=29.35 E-value=32 Score=22.50 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.6
Q ss_pred CCCccchhhhhhhhhhHh
Q 020829 16 NGSRKTKEECFMLFIVLE 33 (321)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (321)
..+..|++||..+|.=.+
T Consensus 24 s~~~mtk~ECeK~~s~~k 41 (64)
T PRK09750 24 SKSKLTKSECEKMLSGKK 41 (64)
T ss_pred cCCcCCHHHHHHHhcccc
Confidence 456789999999976443
No 219
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=27.95 E-value=30 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.8
Q ss_pred CCCCccchhhhhhhhhhHhH
Q 020829 15 WNGSRKTKEECFMLFIVLEI 34 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (321)
+..+..|+.||.++|...+.
T Consensus 20 ys~~kmT~~eCek~fs~~ke 39 (61)
T PF06688_consen 20 YSDSKMTKAECEKMFSKPKE 39 (61)
T ss_pred ecCCccCHHHHHHhccCcCc
Confidence 35788999999999987776
No 220
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.40 E-value=1.2e+02 Score=24.61 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=30.0
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++..+ +..+..++.++|.--+|..+
T Consensus 111 ~rNv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 111 NRNGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 458999999999999998864 33333457777766666553
No 221
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.25 E-value=77 Score=16.38 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=9.8
Q ss_pred eEEEEECCCCCEEE
Q 020829 296 KITACLDPDGWKTV 309 (321)
Q Consensus 296 ~~~~~~DPdG~~iE 309 (321)
-...+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34578999999873
No 222
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=1e+02 Score=29.80 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCeee-cCCccCCCCCceEEEEECCCCCEEEE
Q 020829 271 KTAEAIKLFGGKVT-REPGPLPGINTKITACLDPDGWKTVF 310 (321)
Q Consensus 271 ~~~~~l~~~G~~~~-~~p~~~~~~~~~~~~~~DPdG~~iEl 310 (321)
++...|.++|+++. .+-....| |+....+|+||+..|-
T Consensus 14 ~~a~~La~~g~~vt~~ea~~~~G--Gk~~s~~~~dg~~~E~ 52 (485)
T COG3349 14 AAAYELADAGYDVTLYEARDRLG--GKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHHHhCCCceEEEeccCccC--ceeeeeecCCCCeeee
Confidence 35567888998753 33333444 6899999999999883
No 223
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.82 E-value=2.1e+02 Score=19.39 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHcCCeeeeC-CcccCCCCeEEEEEECCCC
Q 020829 138 DVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFIEDPDG 175 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~-p~~~~~g~~~~~~~~DPdG 175 (321)
.+.++.+.++++|+.++.- ..+.....+.+.|+.|-+|
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 3888999999999886542 2222223445677777776
No 224
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=25.54 E-value=2.8e+02 Score=20.49 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEE--ECCCCcEE--EEEecCCCCCCceEEEEEeCChhHHHHHHH
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYKF--ELLERGPTPEPLCQVMLRVGDLDRSINFYE 208 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~--~DPdG~~i--el~~~~~~~~~l~hi~L~v~D~e~a~~FY~ 208 (321)
.+.+.+.++|+++++-..-.- ..+ ++...+|+ ++.+|..+ |+.-. ...+-..+++.+++.+-+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~-~~~-~~~~~~y~s~~~~~~~~fL~El~~~--~~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASG-KVD-NGQKFFYFSAKTTNGIWFLVELTID--PGSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEE-ECT-T-EEEEEEEEEBTTS-EEEEEEEE---TT-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEecC-CCC-ccccEEEEEEEcCCCcEEEEEEEEc--CCCccEEEEEecCCHHHHHHHHH
Confidence 579999999999998865331 222 13444444 46666533 44433 23446789999999877777764
No 225
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.04 E-value=1.4e+02 Score=20.93 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.8
Q ss_pred eEEEEEeCC----HHHHHHHHHHcCCeeee
Q 020829 130 GHFGIAVDD----VAKTVELIKAKGGKVTR 155 (321)
Q Consensus 130 ~hl~f~v~d----l~~~~~~l~~~Gv~~~~ 155 (321)
..+.++++| ++++.+.|+++|+++..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 457788888 99999999999998754
No 226
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=24.91 E-value=1e+02 Score=23.16 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 267 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 267 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
.|++.+.+.|++.|+++... ...+..++.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 58999999999999999864 33333357777766666554
No 227
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.79 E-value=1.3e+02 Score=24.43 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=30.2
Q ss_pred EEeCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCE
Q 020829 264 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWK 307 (321)
Q Consensus 264 f~v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ 307 (321)
+.-.|++.+.+.|++.|+++..+ +..+..++.++|.--+|..
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~--DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQ--DLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEE--eCCCCCCcEEEEECCCCEE
Confidence 33468999999999999998865 3333345777666666655
No 228
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.12 E-value=1.4e+02 Score=24.10 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.4
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 104 ~rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 104 ARNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 368999999999999998864 33333467787776677654
No 229
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.19 E-value=1.5e+02 Score=24.05 Aligned_cols=41 Identities=2% Similarity=-0.005 Sum_probs=30.0
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++..+ +..+..+|.++|.--+|..+
T Consensus 113 ~rNv~~a~~~L~~~gI~i~a~--DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 113 LENSEFAVNTLNKYGIPILAK--DFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 468999999999999998864 33333457777766666553
No 230
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.17 E-value=89 Score=27.64 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=33.7
Q ss_pred EEEEeCC-HHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEEEEecc
Q 020829 262 IAIGTDD-VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 314 (321)
Q Consensus 262 laf~v~d-l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iEl~~~~ 314 (321)
++.+|+| +..+.+.|+...-.+. |.++..+.+.+..|..++|+.+||..++
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFr--pvPh~~d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFR--PVPHRSDPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccc--cCCccCCCccceeeecCCCeEEEEeccC
Confidence 4445554 7777888886555444 4333333356667799999999999854
No 231
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=23.09 E-value=1.9e+02 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeee
Q 020829 125 IGTGFGHFGIAVDDVAKTVELIKAKGGKVT 154 (321)
Q Consensus 125 ~~~g~~hl~f~v~dl~~~~~~l~~~Gv~~~ 154 (321)
.|.++.+|-+.-.|+.++...++..||.+.
T Consensus 30 ~g~~l~~i~i~~~~lk~F~k~AkKyGV~ya 59 (204)
T PF12687_consen 30 QGKGLKNIEITDEDLKEFKKEAKKYGVDYA 59 (204)
T ss_pred cCCCceEEecCHhhHHHHHHHHHHcCCceE
Confidence 355677777766789999999999998764
No 232
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=22.61 E-value=1.7e+02 Score=21.99 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEE
Q 020829 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 178 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~i 178 (321)
+++.+.+-|+++|+++..+ +.++..++.++|.--+|..+
T Consensus 65 Nv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 65 NVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 6889999999999999865 33444567777776666644
No 233
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=22.24 E-value=4.5e+02 Score=21.68 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=73.9
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeeeCCccc------CCC----CeEEEEEECCCCcEEEEEecCC----CCCCceEEEEEe
Q 020829 132 FGIAVDDVAKTVELIKAKGGKVTREPGPV------KGG----NTVIAFIEDPDGYKFELLERGP----TPEPLCQVMLRV 197 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~~~~~p~~~------~~g----~~~~~~~~DPdG~~iel~~~~~----~~~~l~hi~L~v 197 (321)
+=+.+.|.+...++|++.|.......... +.+ ....+.++.-+|+...+..-++ ......-+.+.+
T Consensus 6 vK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v 85 (178)
T COG1437 6 VKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEV 85 (178)
T ss_pred EEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEe
Confidence 34667789999999999986654332111 100 1122334422233233332222 123467788899
Q ss_pred CChhHHHHHHHHhcCCeeecccCCCCCceEEEEeccCCCCcceEEEeeeccCCCccCCCCCeeEEEEEeCCHHH------
Q 020829 198 GDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK------ 271 (321)
Q Consensus 198 ~D~e~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~~hlaf~v~dl~~------ 271 (321)
.|++++.+-+.. |||....... ..+..+... ...+++.... .-+.+.-+...++|-++
T Consensus 86 ~D~~~~~~il~~-LGF~~~~~Vk----K~R~iY~~~-----~~~i~lD~Ve------gLG~F~EIE~~~~d~~e~~~~~~ 149 (178)
T COG1437 86 SDVEKALEILKR-LGFKEVAVVK----KTREIYKVG-----NVTIELDAVE------GLGDFLEIEVMVDDENEIDGAKE 149 (178)
T ss_pred CCHHHHHHHHHH-cCCceeeEEE----EEEEEEeeC-----CEEEEEeccc------CCcccEEEEEecCCchhhHHHHH
Confidence 999999999966 9998764432 122222221 3445444311 11234455555665333
Q ss_pred -HHHHHHHCCCe
Q 020829 272 -TAEAIKLFGGK 282 (321)
Q Consensus 272 -~~~~l~~~G~~ 282 (321)
+.+.+++.|++
T Consensus 150 ~~~~i~~~lGl~ 161 (178)
T COG1437 150 EIEEIARQLGLK 161 (178)
T ss_pred HHHHHHHHhCCC
Confidence 67788889985
No 234
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.16 E-value=1.5e+02 Score=25.18 Aligned_cols=41 Identities=17% Similarity=-0.022 Sum_probs=30.2
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 138 ~rNi~~a~~~L~~~gI~Iva~--DvGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 138 EKNVEFVLEYAKREKLNVVAQ--DLGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 468999999999999999865 33344467777766666543
No 235
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.15 E-value=1.6e+02 Score=24.42 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=30.6
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKT 308 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 308 (321)
-.|++.+.+.|++.|+++... +..+..++.++|.--+|..+
T Consensus 111 ~rNi~~a~~~L~~~gI~i~a~--DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 111 EQNAAFAMQFLRDEGIPVVGS--STGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCeEE
Confidence 468999999999999998864 33333467777777777664
No 236
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.10 E-value=1.8e+02 Score=19.03 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEEeCCHHHHHHHHHHcCCeee
Q 020829 132 FGIAVDDVAKTVELIKAKGGKVT 154 (321)
Q Consensus 132 l~f~v~dl~~~~~~l~~~Gv~~~ 154 (321)
+-+.++|.+.+.+.|+++|+++.
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEEE
Confidence 45666888899999999998763
No 237
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=22.02 E-value=2.4e+02 Score=18.61 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCCCceEEEEEeCChhHHHHHHHH
Q 020829 175 GYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQ 209 (321)
Q Consensus 175 G~~iel~~~~~~~~~l~hi~L~v~D~e~a~~FY~~ 209 (321)
|...++.+....+.++ +.|.=+|.+.+.+||.+
T Consensus 26 ~~~~~~leG~~~~~~~--viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 26 GGEPEVLEGDWDPDRV--VIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp CEEEEEEEST-SSSEE--EEEEESSHHHHHHHHCS
T ss_pred CCceeEEecCCCCCeE--EEEECCCHHHHHHHHCC
Confidence 4556666663333333 66677899999999954
No 238
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.06 E-value=1.7e+02 Score=24.55 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=30.9
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCEEE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 309 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iE 309 (321)
-.|++.+.+.|++.|+++... ...+..++.++|.--+|..+-
T Consensus 114 ~rNie~a~~~L~~~GI~ivae--DvGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 114 QANAAFARRYLRDEGIRCTAH--SLGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 358999999999999998864 333334677877776776643
No 239
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.83 E-value=1.8e+02 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEE
Q 020829 137 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 178 (321)
Q Consensus 137 ~dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~i 178 (321)
.|++.+.+.|+++|+++..+ +..+..++.++|.--+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 36899999999999999765 33333556677766666654
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.22 E-value=83 Score=17.84 Aligned_cols=18 Identities=39% Similarity=0.890 Sum_probs=13.9
Q ss_pred eCChhHHHHHHHHhcCCe
Q 020829 197 VGDLDRSINFYEQAFGME 214 (321)
Q Consensus 197 v~D~e~a~~FY~~vLG~~ 214 (321)
..|.++|+.+|++.|.+.
T Consensus 12 ~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALALA 29 (36)
T ss_dssp CT-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 468999999999987554
No 241
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=20.18 E-value=1e+02 Score=27.83 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=31.4
Q ss_pred cccceeEEEEeecCCCCccchhhhhhhhhhHhHh
Q 020829 2 QRRQARVLLMKVPWNGSRKTKEECFMLFIVLEIW 35 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (321)
-||+-++++|||=.|-...++|+..+|-++++.+
T Consensus 35 ar~~~~~~iiKVL~NiD~l~~e~a~eLkkla~~l 68 (313)
T COG1395 35 ARRDLRLLIIKVLYNIDGLSRETAEELKKLAKSL 68 (313)
T ss_pred EecccceeeeeeeecccccCHHHHHHHHHHHHHh
Confidence 3677899999999999999999999999999986
No 242
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.09 E-value=2e+02 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHcCCeeeeCCcccCCCCeEEEEEECCCCcEE
Q 020829 138 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 178 (321)
Q Consensus 138 dl~~~~~~l~~~Gv~~~~~p~~~~~g~~~~~~~~DPdG~~i 178 (321)
|++.+.+.|+++|+++..+ +..+..++.++|.--+|..+
T Consensus 113 Nv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 113 NGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred HHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEEE
Confidence 6999999999999999765 33333456676666666543
No 243
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.03 E-value=1.9e+02 Score=23.26 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=28.9
Q ss_pred eCCHHHHHHHHHHCCCeeecCCccCCCCCceEEEEECCCCCE
Q 020829 266 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWK 307 (321)
Q Consensus 266 v~dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ 307 (321)
-.|++.+.+.|++.|+++..+ +..+..++.++|.--+|..
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~--dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAE--DVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEE--EcCCCCCcEEEEECCCCEE
Confidence 468999999999999998864 3333335777666666654
Done!