Query 020830
Match_columns 321
No_of_seqs 241 out of 1220
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 9E-99 2E-103 722.0 28.6 320 1-321 1-336 (347)
2 PLN03019 carbonic anhydrase 100.0 9E-73 2E-77 539.9 25.6 258 64-321 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 1.5E-65 3.3E-70 480.0 24.6 254 66-320 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 6.2E-62 1.3E-66 461.8 21.5 232 84-317 49-283 (301)
5 PLN02154 carbonic anhydrase 100.0 2.7E-52 5.9E-57 393.9 20.8 203 111-314 72-275 (290)
6 cd00884 beta_CA_cladeB Carboni 100.0 1.3E-52 2.9E-57 377.5 17.4 188 121-309 1-190 (190)
7 PRK10437 carbonic anhydrase; P 100.0 5.1E-52 1.1E-56 380.9 19.8 194 114-316 3-198 (220)
8 KOG1578 Predicted carbonic anh 100.0 8.2E-53 1.8E-57 390.8 13.9 258 43-312 2-260 (276)
9 cd00883 beta_CA_cladeA Carboni 100.0 2.3E-51 4.9E-56 366.9 17.4 179 122-309 1-182 (182)
10 PRK15219 carbonic anhydrase; P 100.0 4.6E-51 9.9E-56 380.0 20.0 189 108-309 50-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 2.4E-50 5.1E-55 367.2 18.8 197 113-316 2-202 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 1.7E-46 3.7E-51 327.7 16.6 150 111-309 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 2.7E-42 5.9E-47 297.8 13.6 151 148-306 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 5.5E-41 1.2E-45 281.2 14.3 119 144-309 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 4.6E-38 1E-42 270.7 13.1 142 144-309 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.2 5E-08 1.1E-12 92.0 -4.7 188 118-308 3-248 (276)
17 PF10070 DUF2309: Uncharacteri 67.0 11 0.00025 41.3 6.0 38 276-313 540-583 (788)
18 PF12778 PXPV: PXPV repeat (3 61.4 4.2 9.2E-05 24.5 0.8 18 41-58 4-21 (22)
19 COG1254 AcyP Acylphosphatases 56.3 9.2 0.0002 30.9 2.3 19 291-309 29-47 (92)
20 TIGR02742 TrbC_Ftype type-F co 38.9 56 0.0012 28.0 4.5 56 130-204 57-112 (130)
21 PF08822 DUF1804: Protein of u 32.1 1.2E+02 0.0025 27.3 5.6 57 68-126 105-161 (165)
22 PF00355 Rieske: Rieske [2Fe-2 32.1 18 0.00039 28.1 0.4 15 294-308 66-80 (97)
23 PF00009 GTP_EFTU: Elongation 32.0 28 0.00061 30.4 1.7 15 204-218 2-16 (188)
24 PRK11440 putative hydrolase; P 29.2 1E+02 0.0022 27.0 4.8 47 164-220 90-136 (188)
25 cd01891 TypA_BipA TypA (tyrosi 29.0 35 0.00077 29.7 1.8 14 204-217 1-14 (194)
26 TIGR01838 PHA_synth_I poly(R)- 29.0 7.1E+02 0.015 26.3 11.6 165 48-219 45-275 (532)
27 PRK11181 23S rRNA (guanosine-2 28.6 2.6E+02 0.0057 26.0 7.7 75 133-217 54-133 (244)
28 PF04019 DUF359: Protein of un 28.6 1.6E+02 0.0034 25.0 5.6 77 140-224 6-82 (121)
29 PRK14432 acylphosphatase; Prov 28.4 43 0.00093 26.9 2.0 20 291-310 27-46 (93)
30 KOG0025 Zn2+-binding dehydroge 28.0 86 0.0019 31.1 4.3 42 161-213 153-194 (354)
31 COG0279 GmhA Phosphoheptose is 27.3 3.5E+02 0.0076 24.6 7.7 63 148-221 83-152 (176)
32 cd03528 Rieske_RO_ferredoxin R 27.2 24 0.00052 27.5 0.4 15 293-307 61-75 (98)
33 PRK00075 cbiD cobalt-precorrin 26.7 4.3E+02 0.0093 26.6 9.1 21 194-215 236-256 (361)
34 cd03478 Rieske_AIFL_N AIFL (ap 26.2 22 0.00049 27.7 0.0 15 293-307 60-74 (95)
35 PRK14440 acylphosphatase; Prov 26.0 53 0.0011 26.2 2.1 19 291-309 28-46 (90)
36 PRK14430 acylphosphatase; Prov 25.9 51 0.0011 26.4 2.0 19 291-309 29-47 (92)
37 PTZ00119 40S ribosomal protein 25.8 2.9E+02 0.0063 27.0 7.4 30 130-159 173-202 (302)
38 PRK14423 acylphosphatase; Prov 25.7 61 0.0013 25.8 2.5 19 291-309 30-48 (92)
39 PF00561 Abhydrolase_1: alpha/ 25.3 64 0.0014 27.5 2.8 30 190-220 28-57 (230)
40 PRK09778 putative antitoxin of 25.0 95 0.0021 25.5 3.4 73 12-103 6-80 (97)
41 PRK14445 acylphosphatase; Prov 24.2 69 0.0015 25.4 2.5 19 291-309 29-47 (91)
42 cd01890 LepA LepA subfamily. 23.7 44 0.00096 28.1 1.4 12 206-217 1-12 (179)
43 PRK14429 acylphosphatase; Prov 23.2 67 0.0015 25.4 2.3 19 291-309 27-45 (90)
44 PF14618 DUF4452: Domain of un 22.6 65 0.0014 28.9 2.3 62 6-67 77-148 (165)
45 PRK14448 acylphosphatase; Prov 22.5 64 0.0014 25.7 2.0 19 291-309 27-45 (90)
46 TIGR02377 MocE_fam_FeS Rieske 22.3 36 0.00078 27.2 0.5 15 293-307 63-77 (101)
47 cd03548 Rieske_RO_Alpha_OMO_CA 21.9 49 0.0011 28.0 1.3 17 293-309 77-93 (136)
48 PRK14451 acylphosphatase; Prov 21.6 69 0.0015 25.4 2.0 19 291-309 28-46 (89)
49 PRK14066 exodeoxyribonuclease 21.6 1.5E+02 0.0033 23.0 3.9 18 66-83 1-18 (75)
50 COG1116 TauB ABC-type nitrate/ 21.5 56 0.0012 31.2 1.7 14 205-218 29-42 (248)
51 cd04160 Arfrp1 Arfrp1 subfamil 20.8 53 0.0012 27.2 1.3 13 207-219 1-13 (167)
52 TIGR02378 nirD_assim_sml nitri 20.8 38 0.00081 27.0 0.3 15 293-307 68-82 (105)
53 PF01764 Lipase_3: Lipase (cla 20.7 1.1E+02 0.0025 24.7 3.3 32 191-222 49-80 (140)
54 PRK14426 acylphosphatase; Prov 20.6 79 0.0017 25.2 2.2 19 291-309 29-47 (92)
55 PF05952 ComX: Bacillus compet 20.6 93 0.002 23.2 2.4 24 274-297 6-29 (57)
56 PRK14441 acylphosphatase; Prov 20.5 96 0.0021 24.8 2.7 20 290-309 29-48 (93)
57 PRK14425 acylphosphatase; Prov 20.4 82 0.0018 25.3 2.3 19 291-309 31-49 (94)
58 PRK09511 nirD nitrite reductas 20.4 34 0.00073 28.0 -0.0 15 293-307 71-85 (108)
59 cd04321 ScAspRS_mt_like_N ScAs 20.2 1.4E+02 0.0029 23.1 3.4 24 291-314 1-26 (86)
60 PRK14449 acylphosphatase; Prov 20.2 87 0.0019 24.8 2.3 19 291-309 28-46 (90)
61 KOG4234 TPR repeat-containing 20.0 97 0.0021 29.3 2.9 29 69-98 182-210 (271)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=9e-99 Score=722.00 Aligned_cols=320 Identities=77% Similarity=1.192 Sum_probs=295.4
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEecc------------CCCCCCCcccCCccccCCCcccCcchhhHhh
Q 020830 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (321)
|||++|||||+||++++++++++ .++|| ++||+|+ |+++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020830 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (321)
++|||+||++|+|||+||++|+++|++||+++|+||++.. .+.+++++++|++||++|+++.+.+++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 020830 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (321)
Q Consensus 146 P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~ 225 (321)
|+++||+||||||+|+.|||++|||+||+||+||+|+++|...|++++++|||||.+|||++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876556678999999999999999999999999999999876
Q ss_pred cCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-HHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCC
Q 020830 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 304 (321)
Q Consensus 226 ~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~tG 304 (321)
..++....++|++|+..+.|++.++..+.+...+.+++..+|+ ||++||++|++||+|++++++|+|.||||+||++||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 5445455689999999999998877766666677778777886 999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCC
Q 020830 305 SFELWGLDFSLSPPLSV 321 (321)
Q Consensus 305 ~v~~~~~~~~~~~~~~~ 321 (321)
+|++|+.+++++|++++
T Consensus 320 ~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 320 AFELWGLEFGLSETSSV 336 (347)
T ss_pred eEEEeccccccCCcccc
Confidence 99999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=9e-73 Score=539.93 Aligned_cols=258 Identities=79% Similarity=1.259 Sum_probs=237.0
Q ss_pred hHhhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 020830 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (321)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~--~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La 141 (321)
++|+++|||+||++|+|||+||++|+++|++||+++|+||++. ..+++++++++|++||++|+++.+.++|++|.+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 4588999999999999999999999999999999999999863 23668999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 020830 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (321)
Q Consensus 142 ~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~A 221 (321)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999988766778999999999999999999999999999999
Q ss_pred cccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEc
Q 020830 222 LMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDF 301 (321)
Q Consensus 222 a~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi 301 (321)
+++...++....++|++|++.+.|++.++....+...+.++++.+|+||++||++|+++|+|++++++|+|.||||+||+
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YDl 310 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCERAVNVSLANLLTYPFVREGVVKGTLALKGGYYDF 310 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEEC
Confidence 98765555455689999999999998776555445566677778899999999999999999999999999999999999
Q ss_pred cCCeEEEEeccCCCCCCCCC
Q 020830 302 VNGSFELWGLDFSLSPPLSV 321 (321)
Q Consensus 302 ~tG~v~~~~~~~~~~~~~~~ 321 (321)
.||+|++|+.+++++|++++
T Consensus 311 ~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 311 VNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCceEEEEccccCcCCCCcC
Confidence 99999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.5e-65 Score=479.99 Aligned_cols=254 Identities=61% Similarity=1.057 Sum_probs=228.1
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 020830 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (321)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (321)
|+.+||+++|.+|.+||+.|+++++++++++..++++|++.. .+|.+++++|++||+||+.+++.+++++|++|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999875 7799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 020830 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (321)
Q Consensus 146 P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~ 225 (321)
|+++|||||||||+|+.|||.+|||+||+||+||+|+++|...++++++||||||.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999875445678899999999999999999999999999999864
Q ss_pred cCCC-CCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-HHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccC
Q 020830 226 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 303 (321)
Q Consensus 226 ~~~g-~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~t 303 (321)
.+.. ....+++..|+..+.|++...........+.+++..+|+ ||++|+++|++||+|++++++|+|.||||+||+.|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 2221 122468999999988888766554444455566667775 99999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCC
Q 020830 304 GSFELWGLDFSLSPPLS 320 (321)
Q Consensus 304 G~v~~~~~~~~~~~~~~ 320 (321)
|+|++++++++.+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999999998753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=6.2e-62 Score=461.80 Aligned_cols=232 Identities=43% Similarity=0.798 Sum_probs=207.4
Q ss_pred hhcCchhhHhHhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 020830 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (321)
Q Consensus 84 ~~~~l~~~a~~~~~~~~~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe 161 (321)
+..+|..+|++|++++|+||++.. ...+++++++|++||.+|+..++.+++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999998654 345789999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHH
Q 020830 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (321)
Q Consensus 162 ~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~ 241 (321)
.|||++|||+|||||+||+|+|+|... .++.++|||||.+|||++|||||||+||||+|+++..+.+ ...++|+.|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987542 5688999999999999999999999999999998765544 34679999999
Q ss_pred hccchhhhhhhhcCCCCchhhhHHHHH-HHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCCC
Q 020830 242 IGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 317 (321)
Q Consensus 242 ~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~tG~v~~~~~~~~~~~ 317 (321)
.+.+++..+........++++++.+|+ ||++||++|++||+|++++++|+|.|||||||+.||+++.|+.+++++.
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 888887666543334456778888996 9999999999999999999999999999999999999999999998764
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.7e-52 Score=393.90 Aligned_cols=203 Identities=41% Similarity=0.754 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccch
Q 020830 111 AFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYA 190 (321)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s 190 (321)
..+.+++|++||++|+++++..++++|++|+.||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.. ..
T Consensus 72 ~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~~ 150 (290)
T PLN02154 72 SYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-PT 150 (290)
T ss_pred hHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-cc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999997642 24
Q ss_pred hhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-H
Q 020830 191 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-A 269 (321)
Q Consensus 191 ~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-n 269 (321)
+++++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.+.....+...+++.++.+|+ |
T Consensus 151 ~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~N 230 (290)
T PLN02154 151 ETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKES 230 (290)
T ss_pred chhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 688999999999999999999999999999998643222234578999998776665443322233345566677886 9
Q ss_pred HHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCC
Q 020830 270 VNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 314 (321)
Q Consensus 270 V~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~tG~v~~~~~~~~ 314 (321)
|+.|++||++||+|++++++|+|.||||+||+.||+|+.|+.+.+
T Consensus 231 V~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 231 IKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 999999999999999999999999999999999999999988764
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.3e-52 Score=377.46 Aligned_cols=188 Identities=51% Similarity=0.810 Sum_probs=162.9
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCc-cchhhHHHHHHH
Q 020830 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (321)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~-~~s~~~aSLEyA 199 (321)
||++|++..+..++++|++|++||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.. .++++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987532 345689999999
Q ss_pred HHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-HHHHHHHHHh
Q 020830 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNVSLSNLL 278 (321)
Q Consensus 200 V~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~qv~~L~ 278 (321)
|.+|+|++|||||||+||||+|+++... +....+++..|+..+.|+......+....+..+..+.+++ ||..|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986433 2234568999999988888776554333334444555555 9999999999
Q ss_pred cChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 020830 279 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 279 s~P~I~~~v~~g~L~VhG~vYDi~tG~v~~~ 309 (321)
++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=5.1e-52 Score=380.88 Aligned_cols=194 Identities=24% Similarity=0.388 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhH
Q 020830 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (321)
Q Consensus 114 ~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~ 193 (321)
.+++|++||++|++..+..+|++|+++++||+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888999999999999999999999999999999999999999999999999998764 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-HHHH
Q 020830 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNV 272 (321)
Q Consensus 194 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~ 272 (321)
++|||||.+|||++|||||||+||||+|+++.. ..+++..|+..+.|+...........+..+..+.+++ ||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 2368999999988887654433333333445554444 9999
Q ss_pred HHHHHhcChhHHhhhhCC-ceEEEEEEEEccCCeEEEEeccCCCC
Q 020830 273 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLS 316 (321)
Q Consensus 273 qv~~L~s~P~I~~~v~~g-~L~VhG~vYDi~tG~v~~~~~~~~~~ 316 (321)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++......
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 999999999999999999 69999999999999999988765443
No 8
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-53 Score=390.84 Aligned_cols=258 Identities=46% Similarity=0.738 Sum_probs=245.9
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 020830 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (321)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~~~~~p~~~l~~Ll~GN 122 (321)
.|+|+.+.|..+.+...+.+..||..++|+.++..+.++|..+.++ +++++++++|++ .+.+++|+++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998899999999999999999999999999 899999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHh
Q 020830 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (321)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~ 202 (321)
..|.++.+.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+|+|+|...+.+++|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888788899999999999
Q ss_pred cCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHH-HHHHHHHHHhcCh
Q 020830 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK-AVNVSLSNLLTYP 281 (321)
Q Consensus 203 L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~-nV~~qv~~L~s~P 281 (321)
|+|++|+||||++|||++++|....++. ...|+.+|+....+++..++++...+++.+||.+||+ +++.++.+|.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999998877665 6789999999999999888888888999999999999 9999999999999
Q ss_pred hHHhhhhCCceEEEEEEEEccCCeEEEEecc
Q 020830 282 FVREGLVNKTLALKGGYYDFVNGSFELWGLD 312 (321)
Q Consensus 282 ~I~~~v~~g~L~VhG~vYDi~tG~v~~~~~~ 312 (321)
++++++.+|.+.+||++||+..|.+++|.++
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 9999999999999999999999999999999
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.3e-51 Score=366.92 Aligned_cols=179 Identities=31% Similarity=0.510 Sum_probs=154.1
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHH
Q 020830 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (321)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~ 201 (321)
|++|+++++.++|++|++|++||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998753 47899999999
Q ss_pred hcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCC-CchhhhHHHHH-HHHHHHHHHhc
Q 020830 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEK-AVNVSLSNLLT 279 (321)
Q Consensus 202 ~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~-~~~e~~~~~E~-nV~~qv~~L~s 279 (321)
+|||++|||||||+||||+|+++.. ..+++.+|+....++........... +..+..+.+++ ||+.|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 24689999998777665433222221 22334444444 99999999999
Q ss_pred ChhHHhhhhC-CceEEEEEEEEccCCeEEEE
Q 020830 280 YPFVREGLVN-KTLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 280 ~P~I~~~v~~-g~L~VhG~vYDi~tG~v~~~ 309 (321)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999998753
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=4.6e-51 Score=380.02 Aligned_cols=189 Identities=22% Similarity=0.329 Sum_probs=159.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhHH---hhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCC
Q 020830 108 DTKAFDSVERIKEGFIHFKREKYEKNPALYS---ELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (321)
Q Consensus 108 ~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~---~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~ 184 (321)
..+|.+++++|++||+||+++.+. +++++. ++++||+|+++||+||||||+||.|||.+|||+||+||+||+|++.
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~ 128 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDD 128 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcc
Confidence 478999999999999999998865 444432 4678999999999999999999999999999999999999999752
Q ss_pred CCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhc-CCCCchhhh
Q 020830 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 263 (321)
Q Consensus 185 d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~e~~ 263 (321)
+++||||||.+|||++|||||||+||||+|+++.. ..+++..|++.+.|++....... ......+..
T Consensus 129 -------~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 129 -------LLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred -------hhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 67899999999999999999999999999998643 24689999999998886543211 111223444
Q ss_pred HHHHH-HHHHHHHHHhc-ChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 020830 264 TYCEK-AVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 264 ~~~E~-nV~~qv~~L~s-~P~I~~~v~~g~L~VhG~vYDi~tG~v~~~ 309 (321)
+.+++ ||+.|+++|++ +|++++++++|+|.||||+||+.||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 45555 99999999986 899999999999999999999999999986
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=367.19 Aligned_cols=197 Identities=33% Similarity=0.510 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchh
Q 020830 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (321)
Q Consensus 113 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~ 191 (321)
..+++|++||++|.++.+..++.+|..|+ +||+|+++|||||||||+||.+||.+|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899999876 56999999999999999999999999999999999999999875 35
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCch-hhh-HHHHHH
Q 020830 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQC-TYCEKA 269 (321)
Q Consensus 192 ~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~-e~~-~~~E~n 269 (321)
+++||||||.+|||++|||||||+|||++|++.....+.. .+.+|+....+.........+..... ++. ..+|.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8999999999999999999999999999999876554432 68999977665554433322221111 232 345569
Q ss_pred HHHHHHHHhcChhHHhhhhCCc-eEEEEEEEEccCCeEEEEeccCCCC
Q 020830 270 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLS 316 (321)
Q Consensus 270 V~~qv~~L~s~P~I~~~v~~g~-L~VhG~vYDi~tG~v~~~~~~~~~~ 316 (321)
|++|+++|+++|.|++++..++ |.||||+||++||+++.++......
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~ 202 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDF 202 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEecccccc
Confidence 9999999999999999988777 9999999999999999887766543
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.7e-46 Score=327.71 Aligned_cols=150 Identities=35% Similarity=0.523 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCc
Q 020830 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (321)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~ 187 (321)
|.+++++|++||++|.+++... +++.|.++++||+|+++||||||||++|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5788999999999999876431 256788999999999999999999999999999999999999999999976
Q ss_pred cchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHH
Q 020830 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 267 (321)
Q Consensus 188 ~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E 267 (321)
++++|||||+.+|||++|||||||+||+++++ .+|
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~------------------------------------------~~~ 111 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA------------------------------------------AVR 111 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH------------------------------------------HHH
Confidence 37899999999999999999999999999864 245
Q ss_pred HHHHHHHHHHhcChhHHh-hhhCCceEEEEEEEEccCCeEEEE
Q 020830 268 KAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 268 ~nV~~qv~~L~s~P~I~~-~v~~g~L~VhG~vYDi~tG~v~~~ 309 (321)
+||+.|+++|+++|+|++ ++++|+|.||||+||++||+++++
T Consensus 112 ~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 112 ANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 699999999999999988 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=2.7e-42 Score=297.84 Aligned_cols=151 Identities=35% Similarity=0.621 Sum_probs=121.2
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC
Q 020830 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (321)
Q Consensus 148 alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~ 227 (321)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++++|||||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 68999999999999999999999999999999998874 46899999999999999999999999999998765321
Q ss_pred CCCCCchhHHHHHHhccchhhhhhhhc-CCC-CchhhhHHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccCCe
Q 020830 228 DGNNSTDFIEDWVKIGIPAKSKVLTEH-GDK-PFGDQCTYCEKAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 305 (321)
Q Consensus 228 ~g~~~~~~I~~wl~~~~pa~~~~~~~~-~~~-~~~e~~~~~E~nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~tG~ 305 (321)
..+.+++|++...++......+. ... .+.+..+..++||+.|+++|+++|+|++++++|+|.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 24689999998888776632222 211 223333445669999999999999999999999999999999999998
Q ss_pred E
Q 020830 306 F 306 (321)
Q Consensus 306 v 306 (321)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.5e-41 Score=281.22 Aligned_cols=119 Identities=42% Similarity=0.754 Sum_probs=111.5
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 020830 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (321)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~ 223 (321)
|+|+++||||||||++|+.+||++|||+||+||+||+|++++ .++++|||||+.+||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 899999999999999999999999999999999999999864 45899999999999999999999999999875
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccC
Q 020830 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 303 (321)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~t 303 (321)
.+++||++|+++|+++|+++++++.+++.|||++||++|
T Consensus 75 -----------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~t 113 (119)
T cd00382 75 -----------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIET 113 (119)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCC
Confidence 235599999999999999999999999999999999999
Q ss_pred CeEEEE
Q 020830 304 GSFELW 309 (321)
Q Consensus 304 G~v~~~ 309 (321)
|+++++
T Consensus 114 G~v~~~ 119 (119)
T cd00382 114 GKLEVL 119 (119)
T ss_pred CEEEeC
Confidence 999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.6e-38 Score=270.75 Aligned_cols=142 Identities=20% Similarity=0.271 Sum_probs=111.6
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 020830 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (321)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~ 223 (321)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++|||||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 378899999999999999999999999999864
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCchhhhHHHHHHHHHHHHHHhcChhHHhhhhCCceEEEEEEEEccC
Q 020830 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 303 (321)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~e~~~~~E~nV~~qv~~L~s~P~I~~~v~~g~L~VhG~vYDi~t 303 (321)
+ .+..|+.............. ..+.......++||+.|+++|+++|+|++ ++.||||+||++|
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~t 136 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGIDK--EFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKT 136 (142)
T ss_pred H----------HHHHHHHHhcCcchhcccCc--chhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCC
Confidence 3 24566654221110000000 00111123456699999999999999994 8999999999999
Q ss_pred CeEEEE
Q 020830 304 GSFELW 309 (321)
Q Consensus 304 G~v~~~ 309 (321)
|+++.+
T Consensus 137 G~v~~v 142 (142)
T cd03379 137 GKLTEV 142 (142)
T ss_pred CEEEeC
Confidence 999853
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.22 E-value=5e-08 Score=91.98 Aligned_cols=188 Identities=22% Similarity=0.257 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEccCCcC
Q 020830 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (321)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~i----------------f~~~pGD~FVvRNaGN~V 181 (321)
|+.|..+|+..-... +.+++..-++|.+..++|+|||+-|... +....||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 667778887765432 2356777889999999999999999776 667899999999999999
Q ss_pred CCCCCc-----cchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccC--CC---CCCchhHHHHHHhcc-------
Q 020830 182 PPYDQT-----KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DG---NNSTDFIEDWVKIGI------- 244 (321)
Q Consensus 182 ~~~d~~-----~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~--~g---~~~~~~I~~wl~~~~------- 244 (321)
+....- ..+--.++|+-|+......||+||||++|-+++....... +. ......++-|+....
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 874210 0011124677788888899999999999999997654322 11 122357888986321
Q ss_pred --c------hhhhhhhhcCCCCch---------hhhH---HHHH-HHHHHHHHHhcChhHH--hhhhCCceEEEE--EEE
Q 020830 245 --P------AKSKVLTEHGDKPFG---------DQCT---YCEK-AVNVSLSNLLTYPFVR--EGLVNKTLALKG--GYY 299 (321)
Q Consensus 245 --p------a~~~~~~~~~~~~~~---------e~~~---~~E~-nV~~qv~~L~s~P~I~--~~v~~g~L~VhG--~vY 299 (321)
. +......+.+..+|. +... .+.+ +..+|.+|..++.+.. ..+.......+| -+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 0 000000011111111 1111 1222 6778899988877766 556666666666 555
Q ss_pred EccCCeEEE
Q 020830 300 DFVNGSFEL 308 (321)
Q Consensus 300 Di~tG~v~~ 308 (321)
+...|..+.
T Consensus 240 l~~~G~~Y~ 248 (276)
T KOG1578|consen 240 LQVHGGYYN 248 (276)
T ss_pred eeeeeeeEE
Confidence 555554443
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=66.96 E-value=11 Score=41.32 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=28.6
Q ss_pred HHhcChhHHhhhhCCc------eEEEEEEEEccCCeEEEEeccC
Q 020830 276 NLLTYPFVREGLVNKT------LALKGGYYDFVNGSFELWGLDF 313 (321)
Q Consensus 276 ~L~s~P~I~~~v~~g~------L~VhG~vYDi~tG~v~~~~~~~ 313 (321)
.|...|-||+++++.. ...+|+..|..|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 3555666777766544 4569999999999999998764
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=61.41 E-value=4.2 Score=24.55 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.7
Q ss_pred CCCcccCCccccCCCccc
Q 020830 41 PPSLIRNEPVFAAPAPII 58 (321)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (321)
.|..++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=56.28 E-value=9.2 Score=30.93 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=17.0
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|+||+++..+|.|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 4669999999999999976
No 20
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.88 E-value=56 Score=28.04 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=36.4
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcC
Q 020830 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (321)
Q Consensus 130 ~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~ 204 (321)
..-||.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++. ||+ +|+||...+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v~--Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVVY--GNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEEE--ecc--------------cHHHHHHHHH
Confidence 34589999988777777 6888888875554322 3455543333 665 6888877654
No 21
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.08 E-value=1.2e+02 Score=27.33 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Q 020830 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFK 126 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~~~~~p~~~l~~Ll~GN~rF~ 126 (321)
.+||..+++.-|+++=|..+|. +|...++.+.+=+++.. +.....+-++++.+....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~l 161 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEEL 161 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666 46666666666555543 333445566666555443
No 22
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=32.07 E-value=18 Score=28.10 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.9
Q ss_pred EEEEEEEccCCeEEE
Q 020830 294 LKGGYYDFVNGSFEL 308 (321)
Q Consensus 294 VhG~vYDi~tG~v~~ 308 (321)
.|||.||+.||++..
T Consensus 66 ~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 66 CHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTEEEETTTSBEEE
T ss_pred CcCCEEeCCCceEec
Confidence 699999999998654
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.97 E-value=28 Score=30.36 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.8
Q ss_pred CcceEEEeccCCCCc
Q 020830 204 KVSNIVVIGHSACGG 218 (321)
Q Consensus 204 ~Vk~IVV~GHS~CGa 218 (321)
.+.+|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999994
No 24
>PRK11440 putative hydrolase; Provisional
Probab=29.18 E-value=1e+02 Score=27.05 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 020830 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (321)
Q Consensus 164 f~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (321)
+...+||.++.++--+-... + .|+.-....|+++|+|+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45678898777765544322 2 36666778999999999965554444
No 25
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=29.04 E-value=35 Score=29.75 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.6
Q ss_pred CcceEEEeccCCCC
Q 020830 204 KVSNIVVIGHSACG 217 (321)
Q Consensus 204 ~Vk~IVV~GHS~CG 217 (321)
.+++|+++||++||
T Consensus 1 ~~r~i~ivG~~~~G 14 (194)
T cd01891 1 DIRNIAIIAHVDHG 14 (194)
T ss_pred CccEEEEEecCCCC
Confidence 36799999999999
No 26
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.96 E-value=7.1e+02 Score=26.27 Aligned_cols=165 Identities=22% Similarity=0.264 Sum_probs=92.9
Q ss_pred CccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCchhhHhHhhHHHHHhhcCCCC------CChHHHHH-----
Q 020830 48 EPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD------TKAFDSVE----- 116 (321)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~l~~~~~------~~p~~~l~----- 116 (321)
..=|++|+===+|. -++..++|--+-.-+..++.+-++++.....+++..+.++-..-+ .+| ++++
T Consensus 45 d~RF~~~~W~~~~~--~~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP-~~~~~~~~t 121 (532)
T TIGR01838 45 DRRFASPAWSSHPF--FDFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNP-EALRLTVET 121 (532)
T ss_pred CCCCCCchhccChH--HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCH-HHHHHHHHc
Confidence 34466554322232 467788888777778888888888888888888877777654322 234 2333
Q ss_pred ---HHHHHHHHHHhhhc---------cCChhhHHhh-hcCC--------------------------CCcEEEEeecCCC
Q 020830 117 ---RIKEGFIHFKREKY---------EKNPALYSEL-AKGQ--------------------------SPKYMVFACSDSR 157 (321)
Q Consensus 117 ---~Ll~GN~rF~~~~~---------~~~p~~~~~L-a~gQ--------------------------~P~alVItCsDSR 157 (321)
.|++|-+.|.+... ..+.+.|+=- .-++ .|-.+|=+|.
T Consensus 122 ~g~~l~~G~~~~~~D~~~~~~~~~i~~~~~~~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i--- 198 (532)
T TIGR01838 122 QGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWI--- 198 (532)
T ss_pred CChhHHHHHHHHHHHHHhcCCCCCCCCCCccceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECccc---
Confidence 57778888866321 1222223200 0112 3333333331
Q ss_pred CChhhhcCCCCCc------------eEE--EEccCCcCCCCCCccc--hhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 020830 158 VCPSHVLDFQPGE------------AFV--VRNVANIVPPYDQTKY--AGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (321)
Q Consensus 158 V~Pe~if~~~pGD------------~FV--vRNaGN~V~~~d~~~~--s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav 219 (321)
.--.|||+.||. +|+ .||.|---.+.....| .++.++|++...++|.+.|.++||+-=|.+
T Consensus 199 -~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl 275 (532)
T TIGR01838 199 -NKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTL 275 (532)
T ss_pred -ccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHH
Confidence 123355655443 444 3565533221111112 346778888888999999999999766655
No 27
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=28.60 E-value=2.6e+02 Score=26.02 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=40.8
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCC-CCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcce
Q 020830 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQ-PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 207 (321)
Q Consensus 133 ~p~~~~~La~gQ~P~alVItCsDSRV----~Pe~if~~~-pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~ 207 (321)
.++.+++++++++|.=++.-|...+. +.+.++... .+-++++=++- .|. .+ ++|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~---dp~------Nl-Gai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVT---DPH------NL-GACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCC---Ccc------hH-HHHHHHHHHcCCCE
Confidence 45667888887777655555554332 223333322 22233332221 111 12 35555667899999
Q ss_pred EEEeccCCCC
Q 020830 208 IVVIGHSACG 217 (321)
Q Consensus 208 IVV~GHS~CG 217 (321)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887554
No 28
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=28.57 E-value=1.6e+02 Score=24.98 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=58.4
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 020830 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (321)
Q Consensus 140 La~gQ~P~alVItCsDSRV~Pe~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav 219 (321)
+..|-.|.+.++-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999988777877655444 55678899999999975 36678899987766778888888877666
Q ss_pred ccccc
Q 020830 220 KGLMS 224 (321)
Q Consensus 220 ~Aa~~ 224 (321)
-+.+-
T Consensus 78 Pail~ 82 (121)
T PF04019_consen 78 PAILY 82 (121)
T ss_pred HHHHh
Confidence 65443
No 29
>PRK14432 acylphosphatase; Provisional
Probab=28.37 E-value=43 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=17.0
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 020830 291 TLALKGGYYDFVNGSFELWG 310 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~~ 310 (321)
++.|.||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 45699999999999998763
No 30
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=27.99 E-value=86 Score=31.11 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=31.6
Q ss_pred hhhcCCCCCceEEEEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEecc
Q 020830 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (321)
Q Consensus 161 e~if~~~pGD~FVvRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GH 213 (321)
..+.++++|| .|+.|.||-. ++.++---+..||++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 4466899999 7999999953 5544444568999999987643
No 31
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.25 E-value=3.5e+02 Score=24.59 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=44.1
Q ss_pred EEEEeecCCCCChhhhcC------CCCCceEE-EEccCCcCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 020830 148 YMVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (321)
Q Consensus 148 alVItCsDSRV~Pe~if~------~~pGD~FV-vRNaGN~V~~~d~~~~s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (321)
.-++||.=--...+.+|. -++||+++ +-+-||-- .++.++|-|. .+|+..|...|-++ |.++
T Consensus 83 sS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~G-G~~~ 151 (176)
T COG0279 83 SSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKDG-GKLA 151 (176)
T ss_pred cHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCCC-cccc
Confidence 456677766677788874 35999877 88888853 3788899775 67888777777543 4444
Q ss_pred c
Q 020830 221 G 221 (321)
Q Consensus 221 A 221 (321)
.
T Consensus 152 ~ 152 (176)
T COG0279 152 G 152 (176)
T ss_pred c
Confidence 3
No 32
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=27.23 E-value=24 Score=27.47 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.9
Q ss_pred EEEEEEEEccCCeEE
Q 020830 293 ALKGGYYDFVNGSFE 307 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~ 307 (321)
..|||.||+.||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 379999999999864
No 33
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=26.72 E-value=4.3e+02 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCcceEEEeccCC
Q 020830 194 AAVEYAVLHLKVSNIVVIGHSA 215 (321)
Q Consensus 194 aSLEyAV~~L~Vk~IVV~GHS~ 215 (321)
-+|++|+. .+++.|+++||-.
T Consensus 236 ~~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 236 PMLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred HHHHHHHH-cCCCEEEEEeeHH
Confidence 37898864 8999999999964
No 34
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=26.16 E-value=22 Score=27.72 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.8
Q ss_pred EEEEEEEEccCCeEE
Q 020830 293 ALKGGYYDFVNGSFE 307 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~ 307 (321)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 379999999999754
No 35
>PRK14440 acylphosphatase; Provisional
Probab=25.98 E-value=53 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 4569999999999998875
No 36
>PRK14430 acylphosphatase; Provisional
Probab=25.93 E-value=51 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|+|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4569999999999998865
No 37
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=25.81 E-value=2.9e+02 Score=27.00 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=20.4
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCC
Q 020830 130 YEKNPALYSELAKGQSPKYMVFACSDSRVC 159 (321)
Q Consensus 130 ~~~~p~~~~~La~gQ~P~alVItCsDSRV~ 159 (321)
..++++.|..+.+.=.=+-+.|+-+|||=+
T Consensus 173 KrkD~erY~~lIkkLGLRkv~f~~~~~~~~ 202 (302)
T PTZ00119 173 YKTDFELYKHTCNLLKIKCILFAIPDSRDR 202 (302)
T ss_pred HhcCHHHHHHHHHHhCCceEEeecccccCh
Confidence 345667777665544556788899999855
No 38
>PRK14423 acylphosphatase; Provisional
Probab=25.69 E-value=61 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.7
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.++.+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 5669999999999998865
No 39
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=25.34 E-value=64 Score=27.48 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 020830 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (321)
Q Consensus 190 s~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 220 (321)
....+.+++-...||++.+.++|||- ||.-
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~ 57 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGML 57 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHH
Confidence 45678899999999999999999998 4443
No 40
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=24.97 E-value=95 Score=25.54 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=35.7
Q ss_pred cccccccccccccCC--CCceEEEeccCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCch
Q 020830 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (321)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334455577888543 32222 234558999886 3445444555432 1111 24445555443
Q ss_pred hhHhHhhHHHHHhh
Q 020830 90 PVAAAKVEQITAQL 103 (321)
Q Consensus 90 ~~a~~~~~~~~~~l 103 (321)
-.++.++.++++-
T Consensus 68 -~~~~~~~~i~~~~ 80 (97)
T PRK09778 68 -PSAARLEEITRRA 80 (97)
T ss_pred -ccHHHHHHHHHHH
Confidence 2345555555443
No 41
>PRK14445 acylphosphatase; Provisional
Probab=24.15 E-value=69 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+..
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 4669999999999998864
No 42
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=23.72 E-value=44 Score=28.12 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred ceEEEeccCCCC
Q 020830 206 SNIVVIGHSACG 217 (321)
Q Consensus 206 k~IVV~GHS~CG 217 (321)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 43
>PRK14429 acylphosphatase; Provisional
Probab=23.24 E-value=67 Score=25.43 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4569999999999998864
No 44
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=22.62 E-value=65 Score=28.90 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=32.3
Q ss_pred ccceeecccccccccccccCCCCceEEEeccCC-CCCCCc------ccCCccc---cCCCcccCcchhhHhh
Q 020830 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPVF---AAPAPIINPNWREDMA 67 (321)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~ 67 (321)
-|-..++|.||.++...--.+..|.+.-.-.++ ..+|.. ---+|.- --+.|||+|.-++.|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788888998777663233334333222211 112332 1122211 2368999999777665
No 45
>PRK14448 acylphosphatase; Provisional
Probab=22.46 E-value=64 Score=25.65 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4569999999999998865
No 46
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=22.27 E-value=36 Score=27.15 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=12.8
Q ss_pred EEEEEEEEccCCeEE
Q 020830 293 ALKGGYYDFVNGSFE 307 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~ 307 (321)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 379999999999753
No 47
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=21.89 E-value=49 Score=27.97 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.5
Q ss_pred EEEEEEEEccCCeEEEE
Q 020830 293 ALKGGYYDFVNGSFELW 309 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~~~ 309 (321)
..|||.||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 37999999999998754
No 48
>PRK14451 acylphosphatase; Provisional
Probab=21.63 E-value=69 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|+|+..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (89)
T PRK14451 28 QLMISGWARNLADGRVEVF 46 (89)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4569999999999999875
No 49
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.58 E-value=1.5e+02 Score=22.99 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 020830 66 MANQSYEEAIEALKKLLK 83 (321)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (321)
|...+||+|+.+|.++++
T Consensus 1 m~~~~fEeal~~LE~IV~ 18 (75)
T PRK14066 1 MAVEKFETALKKLEEVVK 18 (75)
T ss_pred CccccHHHHHHHHHHHHH
Confidence 667789999998887775
No 50
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.50 E-value=56 Score=31.20 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.0
Q ss_pred cceEEEeccCCCCc
Q 020830 205 VSNIVVIGHSACGG 218 (321)
Q Consensus 205 Vk~IVV~GHS~CGa 218 (321)
-+-|.|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 46789999999994
No 51
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=20.82 E-value=53 Score=27.21 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=11.0
Q ss_pred eEEEeccCCCCcc
Q 020830 207 NIVVIGHSACGGI 219 (321)
Q Consensus 207 ~IVV~GHS~CGav 219 (321)
+|+|+||.+||=-
T Consensus 1 ~i~~vG~~~~GKs 13 (167)
T cd04160 1 SVLILGLDNAGKT 13 (167)
T ss_pred CEEEEecCCCCHH
Confidence 4899999999943
No 52
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=20.75 E-value=38 Score=27.00 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=12.6
Q ss_pred EEEEEEEEccCCeEE
Q 020830 293 ALKGGYYDFVNGSFE 307 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~ 307 (321)
..|||.||+.||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 379999999999753
No 53
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.66 E-value=1.1e+02 Score=24.66 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCcceEEEeccCCCCccccc
Q 020830 191 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (321)
Q Consensus 191 ~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa 222 (321)
.+...|.-.+...+-..|+|.|||==|++..+
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 80 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASL 80 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHH
Confidence 34455666666667789999999998887654
No 54
>PRK14426 acylphosphatase; Provisional
Probab=20.64 E-value=79 Score=25.19 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4569999999999998865
No 55
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=20.62 E-value=93 Score=23.17 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHhcChhHHhhhhCCceEEEEE
Q 020830 274 LSNLLTYPFVREGLVNKTLALKGG 297 (321)
Q Consensus 274 v~~L~s~P~I~~~v~~g~L~VhG~ 297 (321)
|..|.++|-+-+.+.+|+..+.|.
T Consensus 6 V~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 6 VNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHChHHHHHHHcCCeeEecC
Confidence 567889999999999999999885
No 56
>PRK14441 acylphosphatase; Provisional
Probab=20.52 E-value=96 Score=24.78 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.1
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 020830 290 KTLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 290 g~L~VhG~vYDi~tG~v~~~ 309 (321)
.++.|.||+.+..+|+|+.+
T Consensus 29 ~~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 29 RRLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hhcCcEEEEEECCCCEEEEE
Confidence 35679999999999998865
No 57
>PRK14425 acylphosphatase; Provisional
Probab=20.43 E-value=82 Score=25.26 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 31 ~~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTAL 49 (94)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4559999999999999875
No 58
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=20.42 E-value=34 Score=27.96 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=12.7
Q ss_pred EEEEEEEEccCCeEE
Q 020830 293 ALKGGYYDFVNGSFE 307 (321)
Q Consensus 293 ~VhG~vYDi~tG~v~ 307 (321)
..|||.||+.||+..
T Consensus 71 P~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 71 PLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCEEECCCcccC
Confidence 379999999999753
No 59
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=20.20 E-value=1.4e+02 Score=23.08 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=18.9
Q ss_pred ceEEEEEEEEccC--CeEEEEeccCC
Q 020830 291 TLALKGGYYDFVN--GSFELWGLDFS 314 (321)
Q Consensus 291 ~L~VhG~vYDi~t--G~v~~~~~~~~ 314 (321)
++.|+||++.+.. |++.++++.-+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~ 26 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDP 26 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECC
Confidence 3679999999997 68888877544
No 60
>PRK14449 acylphosphatase; Provisional
Probab=20.19 E-value=87 Score=24.78 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 020830 291 TLALKGGYYDFVNGSFELW 309 (321)
Q Consensus 291 ~L~VhG~vYDi~tG~v~~~ 309 (321)
++.|.||+.+..+|.|+.+
T Consensus 28 ~lgl~G~V~N~~dG~Vei~ 46 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 4669999999999998875
No 61
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.05 E-value=97 Score=29.34 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHhhhhcCchhhHhHhhHH
Q 020830 69 QSYEEAIEALKKLLKEKEDLKPVAAAKVEQ 98 (321)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 98 (321)
+-||+|++.+|++|+--..-. .|-+++..
T Consensus 182 ek~eealeDyKki~E~dPs~~-ear~~i~r 210 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR-EAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH-HHHHHHHh
Confidence 568999999999986443333 24444433
Done!