BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020831
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 155 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           IV DGY+WRKYGQK  + +P PR+Y++CS +P CPVKK V+RS+ D  +L+ TYEG+H+H
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTKLLITTYEGKHDH 71

Query: 215 PQP 217
             P
Sbjct: 72  DMP 74


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 155 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214
           ++ DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNH 74

Query: 215 PQP 217
             P
Sbjct: 75  DLP 77


>pdb|1WGY|A Chain A, Ra Domain Of Guanine Nucleotide Exchange Factor For Rap1
          Length = 104

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 190 VKKKVQRSAEDPSILVATYEGEHNHPQPTD 219
           V +K+Q + ED +++  T+ GE +  QP D
Sbjct: 39  VAEKIQYAEEDLALVAITFSGEKHELQPND 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.126    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,359,747
Number of Sequences: 62578
Number of extensions: 296790
Number of successful extensions: 632
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 5
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)