Query 020831
Match_columns 321
No_of_seqs 251 out of 693
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00774 WRKY DNA binding do 100.0 5.4E-32 1.2E-36 204.0 5.1 59 156-214 1-59 (59)
2 PF03106 WRKY: WRKY DNA -bindi 100.0 3.1E-32 6.8E-37 205.3 3.0 59 156-215 1-59 (60)
3 PF04500 FLYWCH: FLYWCH zinc f 93.9 0.049 1.1E-06 39.0 2.5 52 153-214 9-62 (62)
4 PF03101 FAR1: FAR1 DNA-bindin 92.8 0.11 2.3E-06 40.4 3.0 31 186-217 60-90 (91)
5 PF08650 DASH_Dad4: DASH compl 84.2 0.85 1.8E-05 36.3 2.4 40 43-83 24-64 (72)
6 COG4026 Uncharacterized protei 83.9 2.3 5E-05 41.0 5.6 42 45-86 164-205 (290)
7 PF00170 bZIP_1: bZIP transcri 79.9 8 0.00017 28.9 6.2 39 43-81 25-63 (64)
8 PF04201 TPD52: Tumour protein 79.8 4.7 0.0001 36.6 5.8 39 43-81 28-66 (162)
9 PF05812 Herpes_BLRF2: Herpesv 71.2 6.2 0.00014 34.2 4.1 27 45-71 4-30 (118)
10 smart00338 BRLZ basic region l 70.9 15 0.00033 27.4 5.7 39 43-81 25-63 (65)
11 PHA03155 hypothetical protein; 67.4 6.8 0.00015 33.9 3.5 25 45-69 9-33 (115)
12 PF06295 DUF1043: Protein of u 65.4 21 0.00046 30.6 6.2 41 45-85 33-77 (128)
13 PHA03162 hypothetical protein; 65.2 7.9 0.00017 34.3 3.6 25 45-69 14-38 (135)
14 KOG4010 Coiled-coil protein TP 64.7 17 0.00037 34.1 5.8 36 46-81 46-81 (208)
15 KOG0646 WD40 repeat protein [G 63.2 18 0.00039 37.8 6.2 43 45-87 429-471 (476)
16 PF06005 DUF904: Protein of un 62.4 38 0.00082 26.7 6.6 41 47-87 21-68 (72)
17 PRK11677 hypothetical protein; 62.4 26 0.00055 30.9 6.2 39 45-83 37-79 (134)
18 PF07795 DUF1635: Protein of u 61.9 24 0.00052 33.5 6.3 37 49-85 24-60 (214)
19 TIGR02894 DNA_bind_RsfA transc 60.9 23 0.00051 32.2 5.8 35 45-79 112-146 (161)
20 KOG4196 bZIP transcription fac 60.2 23 0.00049 31.5 5.5 36 47-82 84-119 (135)
21 PF15294 Leu_zip: Leucine zipp 57.5 26 0.00057 34.4 6.0 40 47-86 128-174 (278)
22 TIGR00219 mreC rod shape-deter 54.3 16 0.00034 35.3 3.9 22 49-70 64-85 (283)
23 TIGR03689 pup_AAA proteasome A 54.3 28 0.00061 36.6 6.0 41 47-87 4-44 (512)
24 COG1792 MreC Cell shape-determ 53.4 15 0.00032 35.6 3.6 23 47-69 86-108 (284)
25 PRK00888 ftsB cell division pr 52.8 34 0.00075 28.5 5.2 36 43-78 33-68 (105)
26 PF03127 GAT: GAT domain; Int 51.6 68 0.0015 25.9 6.7 44 44-87 4-63 (100)
27 PF07716 bZIP_2: Basic region 51.4 33 0.00072 24.9 4.4 28 44-71 25-52 (54)
28 PRK13922 rod shape-determining 48.3 23 0.0005 33.3 3.9 21 48-68 73-93 (276)
29 PF04977 DivIC: Septum formati 46.6 49 0.0011 24.7 4.9 35 43-77 23-57 (80)
30 PF01920 Prefoldin_2: Prefoldi 45.5 48 0.001 26.1 4.8 45 43-87 61-105 (106)
31 PF03980 Nnf1: Nnf1 ; InterPr 45.5 28 0.0006 28.5 3.5 30 40-69 76-105 (109)
32 PF13094 CENP-Q: CENP-Q, a CEN 45.1 75 0.0016 27.7 6.4 43 45-87 42-84 (160)
33 PF06156 DUF972: Protein of un 44.4 54 0.0012 27.7 5.2 19 46-64 24-42 (107)
34 PF08826 DMPK_coil: DMPK coile 44.2 1E+02 0.0022 23.8 6.2 38 47-84 14-51 (61)
35 KOG4378 Nuclear protein COP1 [ 44.0 17 0.00037 38.8 2.5 19 47-65 653-671 (673)
36 PF07875 Coat_F: Coat F domain 43.9 41 0.00089 25.1 4.0 31 58-88 27-57 (64)
37 PRK13169 DNA replication intia 43.3 51 0.0011 28.1 4.9 19 46-64 24-42 (110)
38 PF06657 Cep57_MT_bd: Centroso 41.4 96 0.0021 24.8 5.9 40 47-86 20-64 (79)
39 PF07412 Geminin: Geminin; In 41.2 23 0.00051 33.2 2.7 25 46-70 134-158 (200)
40 PF05377 FlaC_arch: Flagella a 40.5 1.5E+02 0.0032 22.7 6.4 34 45-78 8-41 (55)
41 PRK13923 putative spore coat p 40.0 74 0.0016 29.2 5.7 38 43-80 110-147 (170)
42 PF14775 NYD-SP28_assoc: Sperm 38.9 51 0.0011 25.1 3.8 23 47-69 36-58 (60)
43 PF13118 DUF3972: Protein of u 38.3 83 0.0018 27.7 5.5 35 48-82 82-123 (126)
44 PF14645 Chibby: Chibby family 37.7 91 0.002 26.6 5.6 35 47-81 74-115 (116)
45 PRK14127 cell division protein 36.6 1.1E+02 0.0023 26.2 5.8 41 43-83 29-69 (109)
46 PLN03097 FHY3 Protein FAR-RED 36.3 40 0.00086 37.8 4.0 35 182-218 156-190 (846)
47 PF06696 Strep_SA_rep: Strepto 35.6 59 0.0013 21.2 3.1 18 46-63 7-24 (25)
48 PF13815 Dzip-like_N: Iguana/D 35.1 1E+02 0.0023 25.8 5.5 36 45-80 81-116 (118)
49 TIGR02338 gimC_beta prefoldin, 34.3 1.6E+02 0.0035 24.2 6.5 45 42-86 65-109 (110)
50 KOG4571 Activating transcripti 34.2 1.1E+02 0.0025 30.3 6.3 43 43-85 247-289 (294)
51 PF09755 DUF2046: Uncharacteri 33.9 1E+02 0.0022 30.8 6.0 39 46-84 256-294 (310)
52 PF09789 DUF2353: Uncharacteri 33.3 1.2E+02 0.0025 30.5 6.3 47 41-87 6-52 (319)
53 TIGR02894 DNA_bind_RsfA transc 33.1 1.5E+02 0.0032 27.2 6.4 33 47-79 107-139 (161)
54 PF10224 DUF2205: Predicted co 32.4 1.3E+02 0.0027 24.5 5.3 35 47-88 33-67 (80)
55 PF02183 HALZ: Homeobox associ 31.8 99 0.0021 22.4 4.2 26 47-72 15-40 (45)
56 PF13851 GAS: Growth-arrest sp 31.6 1.2E+02 0.0026 27.9 5.8 39 47-85 44-82 (201)
57 PF15233 SYCE1: Synaptonemal c 31.4 1E+02 0.0022 27.4 5.0 38 47-84 37-74 (134)
58 PF03859 CG-1: CG-1 domain; I 30.5 19 0.00041 31.3 0.3 55 156-211 51-117 (118)
59 PF11365 DUF3166: Protein of u 29.2 1E+02 0.0022 25.9 4.4 30 43-72 14-43 (96)
60 TIGR03752 conj_TIGR03752 integ 28.7 1.5E+02 0.0033 31.3 6.5 23 46-68 75-97 (472)
61 PF05769 DUF837: Protein of un 28.7 67 0.0014 29.4 3.5 25 45-69 154-178 (181)
62 PF04111 APG6: Autophagy prote 28.4 1.8E+02 0.004 28.5 6.7 29 59-87 86-114 (314)
63 PF12325 TMF_TATA_bd: TATA ele 28.3 2E+02 0.0043 24.8 6.2 36 49-84 21-56 (120)
64 PF11577 NEMO: NF-kappa-B esse 27.5 1.3E+02 0.0029 23.7 4.5 30 49-78 4-37 (68)
65 PF04111 APG6: Autophagy prote 26.9 1.9E+02 0.0041 28.5 6.5 38 47-84 46-83 (314)
66 PF15035 Rootletin: Ciliary ro 26.9 1.7E+02 0.0038 26.7 5.9 36 47-82 84-119 (182)
67 PRK10884 SH3 domain-containing 26.5 2.3E+02 0.005 26.5 6.7 15 45-59 101-115 (206)
68 KOG0673 Thymidylate synthase [ 26.0 28 0.00061 34.0 0.6 31 153-183 110-161 (293)
69 PF07526 POX: Associated with 25.9 1.7E+02 0.0036 25.8 5.4 36 52-87 71-106 (140)
70 PF03112 DUF244: Uncharacteriz 25.6 1.2E+02 0.0026 27.6 4.5 19 45-63 78-96 (158)
71 PRK14127 cell division protein 25.3 1.3E+02 0.0028 25.7 4.4 33 45-77 38-70 (109)
72 PF08614 ATG16: Autophagy prot 24.9 2.6E+02 0.0056 25.2 6.6 38 49-86 128-165 (194)
73 PRK13922 rod shape-determining 24.6 1.8E+02 0.0038 27.4 5.7 20 51-70 69-88 (276)
74 TIGR02449 conserved hypothetic 24.5 3.5E+02 0.0076 21.2 6.5 35 46-80 9-43 (65)
75 PF10482 CtIP_N: Tumour-suppre 24.3 85 0.0018 27.4 3.2 21 47-67 99-119 (120)
76 TIGR00219 mreC rod shape-deter 24.0 1.5E+02 0.0033 28.6 5.2 15 49-63 71-85 (283)
77 PF12329 TMF_DNA_bd: TATA elem 23.8 3.1E+02 0.0068 21.5 6.1 46 40-85 8-53 (74)
78 PRK03947 prefoldin subunit alp 23.7 2.1E+02 0.0046 24.2 5.5 36 50-85 5-40 (140)
79 PF07407 Seadorna_VP6: Seadorn 23.7 2E+02 0.0044 29.5 6.1 10 47-56 49-58 (420)
80 KOG1962 B-cell receptor-associ 23.3 1.9E+02 0.004 27.6 5.5 38 47-84 154-191 (216)
81 TIGR02209 ftsL_broad cell divi 23.2 1.5E+02 0.0033 22.7 4.2 28 45-72 32-59 (85)
82 smart00574 POX domain associat 23.2 2.1E+02 0.0045 25.7 5.5 34 54-87 73-106 (140)
83 KOG4005 Transcription factor X 23.0 2.6E+02 0.0057 27.5 6.5 38 45-82 98-135 (292)
84 KOG2070 Guanine nucleotide exc 23.0 2.2E+02 0.0048 30.8 6.4 50 35-85 608-657 (661)
85 PF11932 DUF3450: Protein of u 22.9 3.1E+02 0.0067 25.6 6.9 40 46-85 58-97 (251)
86 PF06818 Fez1: Fez1; InterPro 22.4 2.2E+02 0.0047 26.9 5.7 44 45-88 132-193 (202)
87 COG5509 Uncharacterized small 22.3 1.5E+02 0.0033 23.3 3.9 21 43-63 31-51 (65)
88 COG4026 Uncharacterized protei 22.1 2.7E+02 0.0058 27.3 6.3 39 47-85 138-176 (290)
89 PF07407 Seadorna_VP6: Seadorn 21.3 2.1E+02 0.0045 29.4 5.6 30 44-73 32-61 (420)
90 PRK09343 prefoldin subunit bet 21.1 3.9E+02 0.0085 22.6 6.6 46 42-87 69-114 (121)
91 PF10393 Matrilin_ccoil: Trime 21.1 2.3E+02 0.0051 20.9 4.5 29 53-81 18-46 (47)
92 PF07106 TBPIP: Tat binding pr 20.8 2.2E+02 0.0048 24.9 5.2 15 49-63 84-98 (169)
93 PF03670 UPF0184: Uncharacteri 20.7 2.8E+02 0.0061 22.8 5.3 40 50-89 25-64 (83)
94 PF10146 zf-C4H2: Zinc finger- 20.4 3.1E+02 0.0067 26.1 6.4 37 48-84 64-100 (230)
95 KOG3894 SNARE protein Syntaxin 20.3 2.1E+02 0.0046 28.8 5.4 39 49-87 209-247 (316)
96 PF14662 CCDC155: Coiled-coil 20.2 2.7E+02 0.0058 26.3 5.8 32 46-77 97-128 (193)
97 PF10168 Nup88: Nuclear pore c 20.0 2.6E+02 0.0056 30.8 6.5 42 46-87 581-622 (717)
No 1
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.97 E-value=5.4e-32 Score=203.95 Aligned_cols=59 Identities=59% Similarity=1.258 Sum_probs=57.2
Q ss_pred ccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCC
Q 020831 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 214 (321)
Q Consensus 156 ~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH 214 (321)
++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 47999999999999999999999999999789999999999999999999999999998
No 2
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.97 E-value=3.1e-32 Score=205.34 Aligned_cols=59 Identities=61% Similarity=1.294 Sum_probs=52.2
Q ss_pred ccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCC
Q 020831 156 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHP 215 (321)
Q Consensus 156 ~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~ 215 (321)
++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 479999999999999999999999999996 99999999999999999999999999997
No 3
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=93.92 E-value=0.049 Score=38.95 Aligned_cols=52 Identities=31% Similarity=0.563 Sum_probs=27.2
Q ss_pred cccccCCccccccCccccCCCCCCcccccccCC--CCCccccceeecCCCCCEEEEEeeccCCC
Q 020831 153 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNH 214 (321)
Q Consensus 153 ~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~--~~C~akKqVqr~~~d~~~~~~TY~G~HnH 214 (321)
..++-|||.-+++... ....|+||+.. .+|+|+=.+. .++. . ++...++|||
T Consensus 9 ~~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~-~~~~~~~HnH 62 (62)
T PF04500_consen 9 PKLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-R-VVRTNGEHNH 62 (62)
T ss_dssp EEEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-E-EEE-S---SS
T ss_pred EEEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-E-EEECCCccCC
Confidence 4567899988776554 34679999974 3799987776 3343 3 3334499998
No 4
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=92.77 E-value=0.11 Score=40.44 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.6
Q ss_pred CCCccccceeecCCCCCEEEEEeeccCCCCCC
Q 020831 186 PSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 217 (321)
Q Consensus 186 ~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p 217 (321)
.+|+|+=.|-+.. |....++.+..+|||+.-
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~ 90 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC 90 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence 4999998888876 667899999999999873
No 5
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=84.21 E-value=0.85 Score=36.34 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH-HHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNN-LRQQYMD 83 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~a-Lq~ql~~ 83 (321)
.|.+..|-.+|+++...|+.| +++.+||++|.. .+-+|.+
T Consensus 24 NEsv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnLe~ 64 (72)
T PF08650_consen 24 NESVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNLEA 64 (72)
T ss_pred HHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999 999999999965 5555543
No 6
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.87 E-value=2.3 Score=40.98 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN 86 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~ 86 (321)
+...++++|.|+.-||-+|.+||..+...|..|+..|-++-.
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 345677888888889999999999999999999999888853
No 7
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.92 E-value=8 Score=28.92 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
.+.+..|+.++..+..||..|+.-+..+...+..|..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446688999999999999999999999999988888764
No 8
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=79.75 E-value=4.7 Score=36.63 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
++|.+.|+.||.+|.+|-..|+..|..=...+..|+..|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345578999999999999999999999888888888876
No 9
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=71.23 E-value=6.2 Score=34.21 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
.++.|.+||.|++-||+.|+.-|.+-.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 346799999999999999997776544
No 10
>smart00338 BRLZ basic region leucin zipper.
Probab=70.88 E-value=15 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
.+.+..|+.++..+..||..|..-+..+...+..|..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999988888888877665
No 11
>PHA03155 hypothetical protein; Provisional
Probab=67.40 E-value=6.8 Score=33.88 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
.++.|++||.|++-||+.|+.-|.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466999999999999999987754
No 12
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.40 E-value=21 Score=30.58 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHh
Q 020831 45 ETGILVEELNRISTENKK----LNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkr----L~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
++...+.||.+.+.|... =-++|..|.++|..|..||.+--
T Consensus 33 eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a 77 (128)
T PF06295_consen 33 ELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGA 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544433 22477789999999999987653
No 13
>PHA03162 hypothetical protein; Provisional
Probab=65.22 E-value=7.9 Score=34.28 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
.++.|.+||.|++-||+.|+.-|..
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677999999999999999988843
No 14
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=64.74 E-value=17 Score=34.15 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
-+.|..||.++.||-..||.+|..=...+..|+..|
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999998777776666543
No 15
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=63.15 E-value=18 Score=37.79 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+...+++|..|...|++++=+|+.+-...|+.++..+++-+++
T Consensus 429 ~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~ 471 (476)
T KOG0646|consen 429 RSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQ 471 (476)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999988888777654
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.44 E-value=38 Score=26.75 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRIST-------ENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~e-------ENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|+.|+.++++ ||..|+.-..++...+++.+.+|-.++.+
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555554 46677777777778888888888877654
No 17
>PRK11677 hypothetical protein; Provisional
Probab=62.35 E-value=26 Score=30.87 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhHHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTEN----KKLNEMLSILCKNYNNLRQQYMD 83 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eEN----krL~~mL~~v~~nY~aLq~ql~~ 83 (321)
+++..+.||.+.+.|. -+--++|+.|..+|..|..||..
T Consensus 37 eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 37 ELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444443 24567888999999999999966
No 18
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=61.95 E-value=24 Score=33.48 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 49 LVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
..+||+|..++-.+|..+|...+..-...|.|+..++
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998888898988887
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.93 E-value=23 Score=32.24 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQ 79 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ 79 (321)
+...|+.++..+..||.+|..=+..+-+.|.+|-.
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777778888888888888888888654
No 20
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.23 E-value=23 Score=31.45 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
..|..||.++.+||-+++.=|+..-.+|.+|+.-.+
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 579999999999999999999999999999997654
No 21
>PF15294 Leu_zip: Leucine zipper
Probab=57.49 E-value=26 Score=34.38 Aligned_cols=40 Identities=35% Similarity=0.499 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNY-------NNLRQQYMDLMN 86 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY-------~aLq~ql~~~~~ 86 (321)
+.|..|+.|+++||.+|++-|..+...| ..|+.+|-++-.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999777654444 558888888754
No 22
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=54.29 E-value=16 Score=35.30 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 020831 49 LVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~v 70 (321)
--.+|.++.+||++|++-|..+
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777655544
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=54.27 E-value=28 Score=36.63 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|+.++.++.+.|.||.++|.........|+.+|..+.+-
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55899999999999999999999999999999999988643
No 24
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=53.43 E-value=15 Score=35.60 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
..+..|+..+.+||+||+++|.-
T Consensus 86 ~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 86 EQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555555555555555543
No 25
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.83 E-value=34 Score=28.51 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLR 78 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq 78 (321)
.++...+++|+.+++.+|++|+.=+..+-++...+.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 446688999999999999999999998877644443
No 26
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=51.57 E-value=68 Score=25.92 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHhHHHHHHHHHHHhhh
Q 020831 44 QETGILVEELNRISTENKKLNEMLSI----------------LCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 44 e~~~~L~~EL~Rv~eENkrL~~mL~~----------------v~~nY~aLq~ql~~~~~~ 87 (321)
+....+..||..++.--.-|.+||.. +...|..+|..|+.++..
T Consensus 4 e~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~ 63 (100)
T PF03127_consen 4 EQVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEE 63 (100)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999975 356677888889888865
No 27
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=51.38 E-value=33 Score=24.93 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 44 QETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 44 e~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
+....|+.++..+..||..|...+..+-
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456799999999999999988887653
No 28
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=48.26 E-value=23 Score=33.28 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~ 68 (321)
.|.+|-+++++||.+|+.-+.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 73 DLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444443
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.62 E-value=49 Score=24.74 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNL 77 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aL 77 (321)
..+...|+.++..++.||.+|+.-+..+..+-..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 44678899999999999999999999884443333
No 30
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=45.48 E-value=48 Score=26.13 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
++-...|++++..+.++-.+|...+..+.+.+..++..|.+++..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333467999999999999999999999999999999998776543
No 31
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.46 E-value=28 Score=28.51 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 020831 40 ASVKQETGILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 40 ~~k~e~~~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
+.+.++...|.+.|..+.++|.+|.+-|..
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788999999999999999876654
No 32
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.13 E-value=75 Score=27.67 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
.+..|++|+.++..+.++-.+.|..+-.+..++...+-+...+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999888777654
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.43 E-value=54 Score=27.68 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=9.1
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLN 64 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~ 64 (321)
++.|+..+..+-+||.+|+
T Consensus 24 ~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444455444444
No 34
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.19 E-value=1e+02 Score=23.77 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..|++||.+|++.|..+..-|..--.....|..++-.+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998888877777777776665
No 35
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=44.03 E-value=17 Score=38.76 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNE 65 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~ 65 (321)
+.|++||++++||||+|+.
T Consensus 653 e~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 653 EMLKAELKFLREENQTLRC 671 (673)
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 5699999999999999984
No 36
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=43.89 E-value=41 Score=25.06 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 020831 58 TENKKLNEMLSILCKNYNNLRQQYMDLMNKN 88 (321)
Q Consensus 58 eENkrL~~mL~~v~~nY~aLq~ql~~~~~~~ 88 (321)
..|..||+.|..+.......|.+|+++|.+.
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999873
No 37
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=43.29 E-value=51 Score=28.13 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=9.3
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLN 64 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~ 64 (321)
++.|+..|..+-|||.+|+
T Consensus 24 l~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 24 LGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 38
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=41.39 E-value=96 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCK-----NYNNLRQQYMDLMN 86 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~-----nY~aLq~ql~~~~~ 86 (321)
..|+.||..++-|-+.|..++.++-. ....|..+|-.++.
T Consensus 20 ~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~ 64 (79)
T PF06657_consen 20 KALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVK 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 56999999999999999999998753 44556666666653
No 39
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=41.18 E-value=23 Score=33.23 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v 70 (321)
+..+.+|+.++++||..|+++.+++
T Consensus 134 ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 134 IEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777655543
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.53 E-value=1.5e+02 Score=22.70 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLR 78 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq 78 (321)
++..+...+.-++.||+.|++-|+.+-++-..|-
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777665543
No 41
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=39.98 E-value=74 Score=29.22 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQ 80 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~q 80 (321)
.++++.|+.+.+..+.||++|+.=+..+.++|.+|-..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999997643
No 42
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=38.94 E-value=51 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
..|..|-..+..+|..|+.+|.+
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999875
No 43
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=38.26 E-value=83 Score=27.69 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHH-------HHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCKNYN-------NLRQQYM 82 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~nY~-------aLq~ql~ 82 (321)
+..+=+.-+++||+=|++.|-.|-+.|. .||+||-
T Consensus 82 aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 82 AKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445577789999999999999999994 3666654
No 44
>PF14645 Chibby: Chibby family
Probab=37.67 E-value=91 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHHHHH-------HHHHHHHHHHhHHHHHHHH
Q 020831 47 GILVEELNRISTENKK-------LNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkr-------L~~mL~~v~~nY~aLq~ql 81 (321)
..|..|..++.|||.- |=+||+..+..++.++.+|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555554 4477777777777766543
No 45
>PRK14127 cell division protein GpsB; Provisional
Probab=36.60 E-value=1.1e+02 Score=26.20 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMD 83 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~ 83 (321)
++=+..+..+++.+..||.+|++.+..+-..-..++.++..
T Consensus 29 D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44456677777788888888887777777766666666543
No 46
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=36.32 E-value=40 Score=37.75 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=28.0
Q ss_pred ccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831 182 CSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 218 (321)
Q Consensus 182 Cs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~ 218 (321)
|+- .||+|.=.|.+..+ ..-.++-+..+|||+.-+
T Consensus 156 ~tR-tGC~A~m~Vk~~~~-gkW~V~~fv~eHNH~L~p 190 (846)
T PLN03097 156 CAK-TDCKASMHVKRRPD-GKWVIHSFVKEHNHELLP 190 (846)
T ss_pred ccC-CCCceEEEEEEcCC-CeEEEEEEecCCCCCCCC
Confidence 543 59999999988544 468999999999999943
No 47
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=35.61 E-value=59 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKL 63 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL 63 (321)
+..-++||.|++.+|...
T Consensus 7 la~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 7 LAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 467899999999999864
No 48
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.05 E-value=1e+02 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQ 80 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~q 80 (321)
.+..|++++..+.+++++|+..+....+.-..|+..
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888877777777653
No 49
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.31 E-value=1.6e+02 Score=24.23 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN 86 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~ 86 (321)
+++-...|...+..+.+.-++|...+..+.+.+..+|.+|.++++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344446799999999999999999999999999999999998864
No 50
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=34.22 E-value=1.1e+02 Score=30.34 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
..|.+.|..||+-+..+|++||+-+..+..--.-|+.-|.++.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455779999999999999999999999888777776555553
No 51
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.91 E-value=1e+02 Score=30.84 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
......|...+++||++|+.-|..-.+...+|=.||.+.
T Consensus 256 ~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 256 MAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999988765
No 52
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.31 E-value=1.2e+02 Score=30.51 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 41 SVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 41 ~k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
.|.|.+-.|-.||..-+.|-.+.+.|.+++-+.|.+|+....++...
T Consensus 6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~ 52 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE 52 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46677889999999999999999999999999999999999988743
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.06 E-value=1.5e+02 Score=27.17 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQ 79 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ 79 (321)
..|+.|+..+..+|+.|..=+..+...+..++.
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444444444443
No 54
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.39 E-value=1.3e+02 Score=24.47 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKN 88 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~~ 88 (321)
..|......|++||.+|+ ..-.-||..+-.||...
T Consensus 33 ~~L~~Rve~Vk~E~~kL~-------~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 33 EALSDRVEEVKEENEKLE-------SENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 445556667777777776 45566888888888763
No 55
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.81 E-value=99 Score=22.36 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
..|.+|-.++..||.+|+.++..+.+
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888887776543
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.62 E-value=1.2e+02 Score=27.91 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
.....+|..+..||++|++=|......-..|+.+|..+-
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788888888888888887777777777766664
No 57
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=31.42 E-value=1e+02 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
.+|+.||.-++.|.-.|.++|+.--+-|.-||.|-.+-
T Consensus 37 eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 37 EALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998888888877765443
No 58
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.50 E-value=19 Score=31.29 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred ccCCccccc-cCcccc---------CCCCCCcccccccCCCCCccccceeecCCCC--CEEEEEeecc
Q 020831 156 VKDGYQWRK-YGQKVT---------RDNPSPRAYFKCSFAPSCPVKKKVQRSAEDP--SILVATYEGE 211 (321)
Q Consensus 156 ~~DGy~WRK-YGQK~i---------kgnp~PRsYYrCs~~~~C~akKqVqr~~~d~--~~~~~TY~G~ 211 (321)
-.|||.||| =+-|.| .|...--+||-=+-. .=.....+=+..+.+ .|+.|.|-..
T Consensus 51 RkDG~~WrKkkdgktvRE~HekLKv~~~e~l~~~Yah~~~-~~~F~RR~Ywll~~~~~~iVLVHY~~v 117 (118)
T PF03859_consen 51 RKDGHNWRKKKDGKTVREDHEKLKVGGVEVLNCYYAHSED-NPTFHRRCYWLLDPPYEHIVLVHYLDV 117 (118)
T ss_pred hcccceeEEcCCCCchhhhhhhhccCceeeeEEEEEeecc-CCCeeeEEEEccCCCCceEEEEEeeec
Confidence 369999995 222323 233344456543311 111222222234444 5888888654
No 59
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.19 E-value=1e+02 Score=25.86 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
+||++.|.--|..+-++|++|+.=|+..-.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888876665433
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.68 E-value=1.5e+02 Score=31.27 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
+..|+.|=+++.+||++|+....
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555556666666666433
No 61
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=28.66 E-value=67 Score=29.38 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
.....++.|.++.-||+-||++|..
T Consensus 154 ~~~~~qe~i~qL~~EN~~LRelL~I 178 (181)
T PF05769_consen 154 NSQEEQEIIAQLETENKGLRELLQI 178 (181)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999964
No 62
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.40 E-value=1.8e+02 Score=28.53 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 59 ENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 59 ENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
|-++|.+.-......|+.++.++.++.+.
T Consensus 86 e~~~l~~eE~~~~~~~n~~~~~l~~~~~e 114 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQLELIEFQEE 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334456667777776666543
No 63
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.33 E-value=2e+02 Score=24.79 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 49 LVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
|..+|+|.-.|..-|+.-|..+..--..|...|+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 64
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=27.50 E-value=1.3e+02 Score=23.67 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHH----HHHhHHHHH
Q 020831 49 LVEELNRISTENKKLNEMLSI----LCKNYNNLR 78 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~----v~~nY~aLq 78 (321)
+..-|.++-.||..|++.|.+ |-+.|..|.
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~ 37 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELL 37 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999998886 345554443
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.94 E-value=1.9e+02 Score=28.47 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..+++||..+..|.++|.+-|..+......|..++.++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555555555555444
No 66
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.88 E-value=1.7e+02 Score=26.73 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
..|.+.|..++..|..|++=|..+...+..|+..|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999988877654
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.52 E-value=2.3e+02 Score=26.45 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.7
Q ss_pred hHHHHHHHHHhHHHH
Q 020831 45 ETGILVEELNRISTE 59 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eE 59 (321)
+++.|++||..+..+
T Consensus 101 el~~l~~~l~~~~~~ 115 (206)
T PRK10884 101 QVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHhH
Confidence 445555555555444
No 68
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=26.04 E-value=28 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.638 Sum_probs=21.7
Q ss_pred cccccCCccccccCcc---------------------ccCCCCCCccccccc
Q 020831 153 TLIVKDGYQWRKYGQK---------------------VTRDNPSPRAYFKCS 183 (321)
Q Consensus 153 ~~~~~DGy~WRKYGQK---------------------~ikgnp~PRsYYrCs 183 (321)
.+.+-=|+|||-+|-| .||+||+-|----|.
T Consensus 110 DlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsA 161 (293)
T KOG0673|consen 110 DLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSA 161 (293)
T ss_pred CcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeec
Confidence 3445569999999977 467788777544444
No 69
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=25.95 E-value=1.7e+02 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 52 ELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 52 EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
|...+...--||-.||+.|...|+.-..|+..++..
T Consensus 71 ~~~e~q~kK~KLl~mL~eVd~RY~qY~~Qmq~Vvss 106 (140)
T PF07526_consen 71 ERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVSS 106 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455689999999999999988888777654
No 70
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=25.60 E-value=1.2e+02 Score=27.60 Aligned_cols=19 Identities=53% Similarity=0.599 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKL 63 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL 63 (321)
|...|+.||++++.||++.
T Consensus 78 EI~~lq~ElnKiqnEn~k~ 96 (158)
T PF03112_consen 78 EIDSLQTELNKIQNENKKR 96 (158)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5577999999999999987
No 71
>PRK14127 cell division protein GpsB; Provisional
Probab=25.28 E-value=1.3e+02 Score=25.72 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNL 77 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aL 77 (321)
+.+.|..|+.++++||.+|+.-|..+...-...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456788888888888888888887766544433
No 72
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.92 E-value=2.6e+02 Score=25.20 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831 49 LVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN 86 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~ 86 (321)
|+.++....++.+-+...+..+.+-|.+|+.++..+-.
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444566777777777665543
No 73
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.56 E-value=1.8e+02 Score=27.36 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 020831 51 EELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 51 ~EL~Rv~eENkrL~~mL~~v 70 (321)
..+..+.+||++|++=+..+
T Consensus 69 ~~~~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 69 ASLFDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444433
No 74
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.47 E-value=3.5e+02 Score=21.22 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQ 80 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~q 80 (321)
++.|..-..++++||..|++-+..+...-..|...
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888899999988888776655554433
No 75
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=24.33 E-value=85 Score=27.45 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEML 67 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL 67 (321)
..|..|++.+.+||++|++-|
T Consensus 99 ~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 99 FELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 468899999999999998754
No 76
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.99 E-value=1.5e+02 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.080 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHHHH
Q 020831 49 LVEELNRISTENKKL 63 (321)
Q Consensus 49 L~~EL~Rv~eENkrL 63 (321)
|++|-.++++|+.+|
T Consensus 71 l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 71 LEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 77
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.82 E-value=3.1e+02 Score=21.48 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=34.4
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 40 ASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 40 ~~k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
..|++..+.|.+|...++.-.-++...+..+-.....+..++..+-
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999988888877777777666666666555553
No 78
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.73 E-value=2.1e+02 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 50 VEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 50 ~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
+.+|+.+.+..++|++.+..+......|...+.++.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~ 40 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777777777777766666664
No 79
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.72 E-value=2e+02 Score=29.50 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=5.0
Q ss_pred HHHHHHHHhH
Q 020831 47 GILVEELNRI 56 (321)
Q Consensus 47 ~~L~~EL~Rv 56 (321)
..|..||.|+
T Consensus 49 ~~Lk~eVerL 58 (420)
T PF07407_consen 49 NDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 80
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.28 E-value=1.9e+02 Score=27.63 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..+.+|++...+|-++...=|+..-+++.+|++|..++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444444444555555544443
No 81
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.21 E-value=1.5e+02 Score=22.73 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
+.+.++.|+...++||.+|+.-+..+.+
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5577888888888888888877776654
No 82
>smart00574 POX domain associated with HOX domains.
Probab=23.16 E-value=2.1e+02 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 54 NRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 54 ~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
....-...||-.||+.|+..|+.-..|+..++..
T Consensus 73 ~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~ss 106 (140)
T smart00574 73 QELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSS 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445689999999999999988887777654
No 83
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=23.04 E-value=2.6e+02 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
++..|++|=+++..||..|++.=..+....+.|.+.|-
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44567777777777777777666665555555555443
No 84
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=22.98 E-value=2.2e+02 Score=30.76 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 35 EFEERASVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 35 ~~~~~~~k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
.++++...+ .+-+|..|+..++.||+|++..|+.=-..-..|+.-|..++
T Consensus 608 vleekslvd-tvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l 657 (661)
T KOG2070|consen 608 VLEEKSLVD-TVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKML 657 (661)
T ss_pred eecccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443333 45689999999999999999988877666667776665554
No 85
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.88 E-value=3.1e+02 Score=25.60 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
...|..|+..+...|++|...++.....-..|+.++-++.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665555555665555554
No 86
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=22.40 E-value=2.2e+02 Score=26.91 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHhhhc
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNN------------------LRQQYMDLMNKN 88 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~a------------------Lq~ql~~~~~~~ 88 (321)
.+..|..|+.|+++|-.+++.-.+....+|.. ||.+++.+.+++
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn 193 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN 193 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999888888876666533 888888887764
No 87
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.34 E-value=1.5e+02 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKL 63 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL 63 (321)
++-.+.|++|+.|+..|-.+=
T Consensus 31 ~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 31 EERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344577888888888876553
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.14 E-value=2.7e+02 Score=27.29 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
..+.+.|....+||.-|..-|+.+...|+.+|..|-.+-
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888999999999999999999998887774
No 89
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.25 E-value=2.1e+02 Score=29.43 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020831 44 QETGILVEELNRISTENKKLNEMLSILCKN 73 (321)
Q Consensus 44 e~~~~L~~EL~Rv~eENkrL~~mL~~v~~n 73 (321)
+|...|+.|=.+++.||..|+.=|+++.++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888888888777766443
No 90
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.13 E-value=3.9e+02 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+++-...|.+.+.-+..+-++|..-...+-+.+..++.+|.+++++
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444466888888889999999999999999999999999999876
No 91
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.12 E-value=2.3e+02 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 53 LNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 53 L~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
=+++.+.-++|+.-|+.|...-.+|..++
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566666777777888888888888775
No 92
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.75 E-value=2.2e+02 Score=24.89 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=5.8
Q ss_pred HHHHHHhHHHHHHHH
Q 020831 49 LVEELNRISTENKKL 63 (321)
Q Consensus 49 L~~EL~Rv~eENkrL 63 (321)
|++||..+..+++.|
T Consensus 84 L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 84 LREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 93
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.74 E-value=2.8e+02 Score=22.83 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcC
Q 020831 50 VEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNKNT 89 (321)
Q Consensus 50 ~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~~~ 89 (321)
.+|+..++.---+|...|+++..+-..|..+|.+|++.+.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5677788888888888899999998999999999987643
No 94
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.39 E-value=3.1e+02 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
.|+..+.+..+|..+..+++.++.+-|..|..++-++
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666655554
No 95
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=2.1e+02 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 49 LVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|++.-+.+||++|-.-|+.+-+.|..++.+|+++.+=
T Consensus 209 s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~L 247 (316)
T KOG3894|consen 209 SKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISAL 247 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788888899999999999999999998888887543
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.23 E-value=2.7e+02 Score=26.26 Aligned_cols=32 Identities=31% Similarity=0.266 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNL 77 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aL 77 (321)
...|++|+.-+++||.+|..-.+.+-..|..|
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 35688888888888888877777665555444
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.01 E-value=2.6e+02 Score=30.85 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+..|++|++.+++..++|.+=++.+.+++..|...+..+++.
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666667777777777766666653
Done!