Query 020831
Match_columns 321
No_of_seqs 251 out of 693
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 7E-35 2.4E-39 228.3 7.1 75 141-218 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.9E-34 1.3E-38 225.0 5.5 74 142-218 5-78 (78)
3 2rpr_A Flywch-type zinc finger 84.4 0.6 2.1E-05 35.8 2.8 60 145-218 14-75 (87)
4 2zxx_A Geminin; coiled-coil, c 81.5 1.9 6.4E-05 33.9 4.6 27 45-71 42-68 (79)
5 3m91_A Proteasome-associated A 81.4 5 0.00017 28.9 6.5 41 45-85 10-50 (51)
6 1t2k_D Cyclic-AMP-dependent tr 80.6 2.9 0.0001 30.3 5.1 40 43-82 21-60 (61)
7 1ci6_A Transcription factor AT 79.3 4.4 0.00015 29.8 5.8 41 43-83 22-62 (63)
8 2wt7_A Proto-oncogene protein 77.7 6.8 0.00023 28.6 6.4 40 43-82 22-61 (63)
9 1jnm_A Proto-oncogene C-JUN; B 72.6 3.6 0.00012 29.9 3.7 40 43-82 21-60 (62)
10 1wrd_A TOM1, target of MYB pro 71.8 10 0.00036 30.3 6.6 44 44-87 6-65 (103)
11 1wlq_A Geminin; coiled-coil; 2 66.1 5.6 0.00019 31.5 3.7 26 45-70 46-71 (83)
12 1uii_A Geminin; human, DNA rep 65.2 7.3 0.00025 30.8 4.3 25 46-70 55-79 (83)
13 1dh3_A Transcription factor CR 61.3 11 0.00036 27.1 4.2 32 43-74 21-52 (55)
14 2oa5_A Hypothetical protein BQ 60.6 5.9 0.0002 32.8 3.1 24 45-68 9-32 (110)
15 2j5u_A MREC protein; bacterial 58.7 5.8 0.0002 36.2 3.0 21 48-68 40-60 (255)
16 3s9g_A Protein hexim1; cyclin 56.8 7.7 0.00026 31.8 3.1 19 46-64 67-85 (104)
17 1hjb_A Ccaat/enhancer binding 54.8 21 0.00072 28.1 5.3 38 47-84 39-76 (87)
18 2wvr_A Geminin; DNA replicatio 52.7 13 0.00045 33.8 4.3 38 46-87 124-161 (209)
19 2wt7_B Transcription factor MA 52.6 13 0.00044 29.7 3.7 34 45-78 56-89 (90)
20 1ci6_A Transcription factor AT 52.0 14 0.00046 27.2 3.6 26 45-70 38-63 (63)
21 1oxz_A ADP-ribosylation factor 50.8 36 0.0012 30.1 6.8 45 43-87 68-129 (186)
22 1o3x_A ADP-ribosylation factor 50.7 41 0.0014 28.3 6.8 46 42-87 42-104 (140)
23 1naf_A ADP-ribosylation factor 49.2 35 0.0012 29.5 6.3 46 42-87 51-113 (158)
24 1zxa_A CGMP-dependent protein 48.1 20 0.00069 27.2 4.0 34 41-74 22-55 (67)
25 3hnw_A Uncharacterized protein 47.3 46 0.0016 27.9 6.6 38 47-84 92-129 (138)
26 1t2k_D Cyclic-AMP-dependent tr 46.3 21 0.00073 25.6 3.8 23 45-67 37-59 (61)
27 3m9b_A Proteasome-associated A 46.0 23 0.0008 32.9 4.9 40 46-85 56-95 (251)
28 1lwu_C Fibrinogen gamma chain; 45.9 40 0.0014 32.2 6.7 44 44-87 12-55 (323)
29 1wmi_B RELB, hypothetical prot 43.4 14 0.00048 27.9 2.4 21 48-68 8-28 (67)
30 4dzo_A Mitotic spindle assembl 43.3 34 0.0012 28.3 5.1 34 45-78 5-38 (123)
31 1wr6_A ADP-ribosylation factor 42.9 6.6 0.00022 32.1 0.7 39 49-87 6-60 (111)
32 3a7o_A Autophagy protein 16; c 42.9 72 0.0025 24.7 6.4 40 45-84 19-58 (75)
33 1hjb_A Ccaat/enhancer binding 42.3 20 0.0007 28.2 3.4 28 45-72 51-78 (87)
34 2dgc_A Protein (GCN4); basic d 42.3 36 0.0012 25.0 4.6 31 43-73 29-59 (63)
35 3bas_A Myosin heavy chain, str 41.7 86 0.0029 24.2 6.9 44 41-84 18-61 (89)
36 1gu4_A CAAT/enhancer binding p 41.0 24 0.00082 27.2 3.5 36 47-82 39-74 (78)
37 2zqm_A Prefoldin beta subunit 39.3 88 0.003 24.2 6.8 46 42-87 68-113 (117)
38 1wt6_A Myotonin-protein kinase 38.5 82 0.0028 24.7 6.2 38 47-84 27-64 (81)
39 1cz6_A Protein (androctonin); 38.2 8.7 0.0003 24.0 0.5 8 178-185 16-23 (26)
40 1gd2_E Transcription factor PA 38.1 29 0.00099 26.3 3.5 26 47-72 39-64 (70)
41 1t6f_A Geminin; coiled-coil, c 37.4 23 0.00077 24.1 2.5 20 46-65 16-35 (37)
42 2w6b_A RHO guanine nucleotide 35.5 1.2E+02 0.004 22.3 6.2 33 46-78 12-44 (56)
43 2oxj_A Hybrid alpha/beta pepti 35.0 50 0.0017 22.1 3.8 22 47-68 11-32 (34)
44 2c9l_Y EB1, zebra, BZLF1 trans 34.8 20 0.00067 26.6 2.0 18 56-73 34-51 (63)
45 4h22_A Leucine-rich repeat fli 34.8 86 0.0029 25.6 6.0 35 47-81 47-81 (103)
46 2wt7_A Proto-oncogene protein 34.4 49 0.0017 24.0 4.2 23 46-68 39-61 (63)
47 3q8t_A Beclin-1; autophagy, AT 34.0 1.1E+02 0.0036 24.1 6.4 41 47-87 21-75 (96)
48 3q8t_A Beclin-1; autophagy, AT 33.6 1.1E+02 0.0038 24.0 6.5 42 45-86 5-46 (96)
49 3a7p_A Autophagy protein 16; c 33.1 1E+02 0.0035 26.7 6.6 43 45-87 69-118 (152)
50 1fmh_A General control protein 32.8 76 0.0026 20.7 4.3 27 45-71 2-28 (33)
51 4etp_A Kinesin-like protein KA 32.6 80 0.0027 30.5 6.6 40 45-84 18-57 (403)
52 2yy0_A C-MYC-binding protein; 32.4 68 0.0023 22.9 4.6 28 45-72 20-47 (53)
53 2z5i_A TM, general control pro 32.2 56 0.0019 23.2 4.1 30 45-74 20-49 (52)
54 3u06_A Protein claret segregat 31.5 95 0.0032 30.2 6.9 39 46-84 19-57 (412)
55 1gu4_A CAAT/enhancer binding p 31.1 20 0.00068 27.7 1.7 25 46-70 52-76 (78)
56 3s9g_A Protein hexim1; cyclin 30.6 1.1E+02 0.0038 25.0 6.0 41 47-87 40-80 (104)
57 2wuj_A Septum site-determining 30.2 47 0.0016 23.8 3.4 29 43-71 26-54 (57)
58 4etp_A Kinesin-like protein KA 29.8 71 0.0024 30.9 5.7 36 48-83 7-42 (403)
59 1kd8_B GABH BLL, GCN4 acid bas 29.0 83 0.0028 21.3 4.2 24 46-69 10-33 (36)
60 3l4f_A RHO guanine nucleotide 28.1 1.7E+02 0.006 21.7 6.2 41 47-87 10-50 (61)
61 2zxx_A Geminin; coiled-coil, c 27.7 38 0.0013 26.4 2.7 17 48-64 38-54 (79)
62 3u06_A Protein claret segregat 27.6 93 0.0032 30.3 6.1 36 48-83 7-42 (412)
63 3c3f_A Alpha/beta peptide with 27.4 80 0.0027 21.1 3.8 22 47-68 11-32 (34)
64 2akf_A Coronin-1A; coiled coil 27.3 1.2E+02 0.004 19.8 4.5 25 48-72 3-27 (32)
65 2wvr_A Geminin; DNA replicatio 26.9 1.3E+02 0.0046 27.2 6.5 40 47-87 118-157 (209)
66 3v86_A De novo design helix; c 25.8 52 0.0018 20.6 2.5 19 45-63 8-26 (27)
67 2fxo_A Myosin heavy chain, car 25.3 1.9E+02 0.0065 23.4 6.7 43 42-84 18-60 (129)
68 1fzc_C Fibrin; blood coagulati 25.2 43 0.0015 31.9 3.2 41 47-87 7-47 (319)
69 1xiw_B T-cell surface glycopro 25.1 21 0.00071 27.1 0.8 27 157-183 17-53 (79)
70 1fxk_C Protein (prefoldin); ar 25.0 77 0.0026 25.4 4.3 35 52-86 2-36 (133)
71 3m48_A General control protein 24.7 75 0.0026 21.1 3.3 22 47-68 10-31 (33)
72 1uo4_A General control protein 24.6 76 0.0026 21.2 3.3 23 46-68 10-32 (34)
73 3mud_A DNA repair protein XRCC 23.9 68 0.0023 28.4 3.9 27 45-71 143-169 (175)
74 1uii_A Geminin; human, DNA rep 23.7 1.5E+02 0.0051 23.3 5.5 26 47-72 49-74 (83)
75 2yy0_A C-MYC-binding protein; 23.7 1.5E+02 0.005 21.1 5.0 22 46-67 28-49 (53)
76 2kes_A Synphilin-1; synphillin 23.2 93 0.0032 22.0 3.7 28 61-88 14-41 (48)
77 1jnm_A Proto-oncogene C-JUN; B 22.9 33 0.0011 24.7 1.5 23 46-68 38-60 (62)
78 2r2v_A GCN4 leucine zipper; co 22.7 1.2E+02 0.0041 20.3 4.0 22 47-68 11-32 (34)
79 2aze_B Transcription factor E2 22.7 1.3E+02 0.0045 24.1 5.2 28 46-73 8-35 (106)
80 1t3j_A Mitofusin 1; coiled coi 22.2 2.7E+02 0.0092 22.3 6.8 42 43-84 46-90 (96)
81 3a5t_A Transcription factor MA 22.0 1.4 4.9E-05 36.2 -6.7 35 48-82 69-103 (107)
82 3mtu_E Head morphogenesis prot 21.4 1.2E+02 0.0042 23.5 4.5 29 45-73 45-73 (77)
83 2w6a_A ARF GTPase-activating p 20.6 1E+02 0.0036 23.0 3.7 33 47-79 23-55 (63)
84 1fxk_C Protein (prefoldin); ar 20.1 2.8E+02 0.0097 21.9 6.7 45 43-87 87-131 (133)
85 1gd2_E Transcription factor PA 20.1 1.9E+02 0.0066 21.7 5.3 37 43-79 28-64 (70)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7e-35 Score=228.29 Aligned_cols=75 Identities=52% Similarity=1.022 Sum_probs=69.6
Q ss_pred eeEEEeecCCCCcccccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831 141 SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 218 (321)
Q Consensus 141 ~rv~vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~ 218 (321)
+||.|++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~-~-~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQT-L-FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEEC-S-SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecC-C-CCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 478888874 4 46789999999999999999999999999998 699999999999999999999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3.9e-34 Score=225.02 Aligned_cols=74 Identities=50% Similarity=1.005 Sum_probs=65.9
Q ss_pred eEEEeecCCCCcccccCCccccccCccccCCCCCCcccccccCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831 142 RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 218 (321)
Q Consensus 142 rv~vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~ 218 (321)
+|.+++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 5 ~~~~~t~s-~-~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTS-E-VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCC-C-CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccC-C-CCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 56677764 3 46799999999999999999999999999998 699999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=84.37 E-value=0.6 Score=35.79 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=37.0
Q ss_pred EeecCCCCcccccCCccccccCccccCCCCCCcccccccCC--CCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 020831 145 VRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 218 (321)
Q Consensus 145 vr~~~~dt~~~~~DGy~WRKYGQK~ikgnp~PRsYYrCs~~--~~C~akKqVqr~~~d~~~~~~TY~G~HnH~~p~ 218 (321)
+++. .+...++-|||...+--+ ...+.|.+|+.. .+|+|+=.... ++ +...+.|||++..
T Consensus 14 v~s~-rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~ 75 (87)
T 2rpr_A 14 LRTS-LGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDL 75 (87)
T ss_dssp EEET-TTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCH
T ss_pred EEcC-CCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCch
Confidence 4443 233567889998775321 123679999963 48999744432 22 2356889997543
No 4
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=81.48 E-value=1.9 Score=33.86 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
++..+++|+.++++||+.|++|++++-
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999864
No 5
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=81.35 E-value=5 Score=28.92 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
.+..|+.+|..+.+-|.||.++|..--..-..|+.+|-.+.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999999998899998887663
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.56 E-value=2.9 Score=30.29 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
.+.+..|+.+...+..+|..|..-+..+......|+.+|+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456789999999999999999999999888888887764
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.31 E-value=4.4 Score=29.81 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMD 83 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~ 83 (321)
.+....|+.++..+..+|..|+.-+..+..-...|+.-|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44557899999999999999999999888888888776654
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.72 E-value=6.8 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
.+.+..|+.+...+..+|..|..-+..+...+..|...|.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999999888888887776654
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.63 E-value=3.6 Score=29.93 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
.+.+..|+.+...+..+|..|..-+..+......|+..|+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999999888888777776654
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=71.79 E-value=10 Score=30.27 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHhHHHHHHHHHHHhhh
Q 020831 44 QETGILVEELNRISTENKKLNEMLSI----------------LCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 44 e~~~~L~~EL~Rv~eENkrL~~mL~~----------------v~~nY~aLq~ql~~~~~~ 87 (321)
|.++.+..||..|+.--+-|.+||+. +++.|..+|-.|+.+...
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~ 65 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ 65 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999984 456667788888888763
No 11
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.08 E-value=5.6 Score=31.49 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v 70 (321)
.+..+.+|+.++++||++|+++-.++
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888877664
No 12
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.21 E-value=7.3 Score=30.81 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v 70 (321)
+..|++|+..+++||.+|+++..++
T Consensus 55 ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655543
No 13
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.30 E-value=11 Score=27.14 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNY 74 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY 74 (321)
.+-+..|+.++..+..||..|..-|..+...|
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999988887665
No 14
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=60.64 E-value=5.9 Score=32.81 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
.++.|.+||.|++-||+.|+.-|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999997665
No 15
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=58.74 E-value=5.8 Score=36.22 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~ 68 (321)
....+|..+..||+||+++|.
T Consensus 40 ~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 40 QLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344445555556666666554
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.84 E-value=7.7 Score=31.76 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLN 64 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~ 64 (321)
+..|++||.|++.||++|+
T Consensus 67 v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888886
No 17
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.79 E-value=21 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=30.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..++.+...+..||.+|+.-+..+......|+..|+.+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45788888888999999999998888888888766653
No 18
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=52.74 E-value=13 Score=33.77 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+..|++|+.++++||..|+++..++- .|-.-|-.|+..
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLae~~q----~la~vi~~l~~~ 161 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVAEHVQ----YMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC
Confidence 35566777777777777776666542 333444445544
No 19
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.61 E-value=13 Score=29.69 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLR 78 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq 78 (321)
+...|+.|+.++..||.++..-++.+-..|.+|+
T Consensus 56 e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 56 EKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467888888899999988888888888888774
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.00 E-value=14 Score=27.15 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v 70 (321)
+...|..++.++..|+..|+.+|..|
T Consensus 38 ~N~~L~~~i~~L~~E~~~Lk~ll~e~ 63 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYLKDLIEEV 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34789999999999999999998753
No 21
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=50.77 E-value=36 Score=30.07 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHhhh
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSI-----------------LCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~-----------------v~~nY~aLq~ql~~~~~~ 87 (321)
.|..+.+..||..|+.--+-|.+||+. +++.|..+|-.|+.+...
T Consensus 68 ~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 68 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999984 567777888888888754
No 22
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=50.67 E-value=41 Score=28.32 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHhhh
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSI-----------------LCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~-----------------v~~nY~aLq~ql~~~~~~ 87 (321)
+.|..+.+..||..|+.--+-|.+||+. ++..|..+|-.|+.+...
T Consensus 42 r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e 104 (140)
T 1o3x_A 42 RMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999984 566667777777777654
No 23
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=49.22 E-value=35 Score=29.49 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHhhh
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSI-----------------LCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~-----------------v~~nY~aLq~ql~~~~~~ 87 (321)
+.|..+.+..||..|+.--+-|.+||+. +++.|..+|-.|+.+...
T Consensus 51 r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 51 RMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999984 567777788888888754
No 24
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.07 E-value=20 Score=27.17 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 020831 41 SVKQETGILVEELNRISTENKKLNEMLSILCKNY 74 (321)
Q Consensus 41 ~k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY 74 (321)
.|++-...|+.+|+.-.+|.+.|+..|..++.=.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667899999999999999999988776543
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.34 E-value=46 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..|..||...+.++..++.-+..+-+.++.|+.++..+
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555666666665555
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.28 E-value=21 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEML 67 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL 67 (321)
+...|..|+..+.+|+..|+.+|
T Consensus 37 ~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999887
No 27
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.01 E-value=23 Score=32.93 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLM 85 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~ 85 (321)
...|+.++..+.+.|++|++.|...-.....|+.+|..+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999999999999988874
No 28
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.85 E-value=40 Score=32.18 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 44 QETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 44 e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+++..|+.-|.+..++-+.|+.+|..+..+...|+.+|.+++++
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999999999999888865
No 29
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=43.35 E-value=14 Score=27.86 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~ 68 (321)
.+-.||.|++-|-+||..||-
T Consensus 8 ~vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 8 DVLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 377899999999999999985
No 30
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=43.33 E-value=34 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLR 78 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq 78 (321)
|+..|++||.....-|+||+++-..=...|..-=
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999888777665533
No 31
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=42.87 E-value=6.6 Score=32.08 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHH----------------HHHHhHHHHHHHHHHHhhh
Q 020831 49 LVEELNRISTENKKLNEMLS----------------ILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 49 L~~EL~Rv~eENkrL~~mL~----------------~v~~nY~aLq~ql~~~~~~ 87 (321)
+..||.+|+.--+-|.+||+ .++..|..+|-.|+.+...
T Consensus 6 ~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e 60 (111)
T 1wr6_A 6 RLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASE 60 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777776 4667778888888888754
No 32
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=42.85 E-value=72 Score=24.65 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
.++.|++||.---.|-++|++.|..-..++..|--.|..+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 4578999999999999999999999899998887776665
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.28 E-value=20 Score=28.19 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
+-..|..|+..+..|...|+.+|.++..
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3367888888888899999888887654
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.26 E-value=36 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKN 73 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~n 73 (321)
.+.+..|+.++..+..||..|..-+..+-+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455779999999999999998877766543
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.70 E-value=86 Score=24.17 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 41 SVKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 41 ~k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
.++++...|.+.|.+....-+.|..-...+...++.|+.|+.++
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556666777777777777778888888888888888885444
No 36
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.03 E-value=24 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=28.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
..++.+...+..||..|+.-+..+......|+..|+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888889999999988888877777775443
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.31 E-value=88 Score=24.15 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
+++-...|...+..+.++-++|..-+..+...+..|+.+|.++++.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444467889999999999999999999999999999999998865
No 38
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.45 E-value=82 Score=24.74 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
..+.+||.++++.|.-+-.=|...-..+..|..++..+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988877777777777777665544
No 39
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=38.21 E-value=8.7 Score=23.96 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=6.8
Q ss_pred ccccccCC
Q 020831 178 AYFKCSFA 185 (321)
Q Consensus 178 sYYrCs~~ 185 (321)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999975
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.06 E-value=29 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
..|+.+...+..||..|+..+..+..
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666665543
No 41
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.36 E-value=23 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNE 65 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~ 65 (321)
+.+-.+|+.|+++||..|.+
T Consensus 16 ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHh
Confidence 45567889999999999876
No 42
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.53 E-value=1.2e+02 Score=22.33 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLR 78 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq 78 (321)
+=+|..|+..++.||++|+..|+.=-..-..|.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888888888888888887775444434443
No 43
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.95 E-value=50 Score=22.09 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
+.|..|=..+..|+.||++||.
T Consensus 11 EeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhHHHHHHHHHHHHh
Confidence 4466777777888899998884
No 44
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=34.79 E-value=20 Score=26.60 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 020831 56 ISTENKKLNEMLSILCKN 73 (321)
Q Consensus 56 v~eENkrL~~mL~~v~~n 73 (321)
-++||.||+-.|.+||-.
T Consensus 34 ks~en~rlr~l~kqmcps 51 (63)
T 2c9l_Y 34 KSSENDRLRLLLKQMCPS 51 (63)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hcccchHHHHHHHHhCCc
Confidence 468999999999999854
No 45
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.77 E-value=86 Score=25.60 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQY 81 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql 81 (321)
..|+.|++.-..|..+|+.+++.+...+..|+.+|
T Consensus 47 aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 47 AESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555443
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.37 E-value=49 Score=23.99 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
-..|..|+..+.+|...|+.||.
T Consensus 39 n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 39 KSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999998885
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.97 E-value=1.1e+02 Score=24.14 Aligned_cols=41 Identities=22% Similarity=0.439 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEML--------------SILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL--------------~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|..||..+-.|...|..-| ......|++++.+++++...
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444 34567799999999888654
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.60 E-value=1.1e+02 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN 86 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~ 86 (321)
++..|++||..+..|-.+|-.=|..+-.....|-..|.++-.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~ 46 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 447799999999999999999999999999998888877643
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.13 E-value=1e+02 Score=26.69 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHhhh
Q 020831 45 ETGILVEELNRISTENKKLNEM-------LSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~m-------L~~v~~nY~aLq~ql~~~~~~ 87 (321)
.+..|+.||.+...+.+.|.+- +..+.+-|.+||.|+..+-.+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999998888888855 445778888888887776544
No 50
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=32.82 E-value=76 Score=20.67 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
|+++|+.|..+...||-+|..-..++.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457788899999999999887666654
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.59 E-value=80 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
+...|++++..+.+|++.|.+.|..-...-..|++.+.++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666666666666666666665555555566666665
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.40 E-value=68 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
++++|+.|+..++.++..|+.-+..++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666655554
No 53
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.24 E-value=56 Score=23.23 Aligned_cols=30 Identities=20% Similarity=0.126 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKNY 74 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY 74 (321)
++..|++||..-++.++.+.+.|++.....
T Consensus 20 ~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 20 LVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999998865443
No 54
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.48 E-value=95 Score=30.21 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
...|++++.+..+|++.|++-|..-......|+++|+++
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355777777777777777777766666666677777776
No 55
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.14 E-value=20 Score=27.67 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSIL 70 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v 70 (321)
-..|..|+..+..|...|+.||.++
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3678888888888888888887654
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.61 E-value=1.1e+02 Score=24.95 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
=.|+..+.++.+||+||+..=...+..-.+|+..+-.+...
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 36889999999999999987666777777777777666544
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.17 E-value=47 Score=23.78 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
++-+..+.+++.++..||..|++-|..+.
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999998877653
No 58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.82 E-value=71 Score=30.89 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMD 83 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~ 83 (321)
+|.+||..+.++.+.|.+-+..+...+..|+.+|..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555444443
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.00 E-value=83 Score=21.26 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLSI 69 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~ 69 (321)
++.|..+...+..|..||+++|..
T Consensus 10 VEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 10 VEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcc
Confidence 345777888888888999998875
No 60
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=28.09 E-value=1.7e+02 Score=21.74 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
=+|..|+..++.||++++..|+....--..|..-+-.+..+
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888889999999999998888777777777666555543
No 61
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=27.70 E-value=38 Score=26.44 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.9
Q ss_pred HHHHHHHhHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLN 64 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~ 64 (321)
.|-.++....+|..+|+
T Consensus 38 ~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 62
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.64 E-value=93 Score=30.27 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMD 83 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~ 83 (321)
.|++||.++.++.+.|.+-+..+......|..+|.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555555555555555444
No 63
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.36 E-value=80 Score=21.08 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
+.|..|...+..|..||++||.
T Consensus 11 EeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 11 EXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 4477777788888888998885
No 64
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.26 E-value=1.2e+02 Score=19.81 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
.|++||+.++.-.++|.+-|+.+.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888777776654
No 65
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.94 E-value=1.3e+02 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|..+|....+|+.+|++|+..+-+--..+| +|.+++.+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q-~la~vi~~ 157 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQ-YMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 56777788888888888888877766555555 35555544
No 66
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.77 E-value=52 Score=20.61 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKL 63 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL 63 (321)
|++.|..|.+-++.|.+.|
T Consensus 8 evgelkgevralkdevkdl 26 (27)
T 3v86_A 8 EVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcc
Confidence 4567777777777777665
No 67
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=25.26 E-value=1.9e+02 Score=23.44 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 020831 42 VKQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDL 84 (321)
Q Consensus 42 k~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~ 84 (321)
+++++..|.+.|.+....-+.|..-...+...++.|+.+|..-
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E 60 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555556666666666666666666665543
No 68
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.24 E-value=43 Score=31.87 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
..|++.+....++-+.|+.+|..+-.+...|+.++..++.+
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666777777777777777777777654
No 69
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.10 E-value=21 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=18.6
Q ss_pred cCCccccccCccc--------cC--CCCCCccccccc
Q 020831 157 KDGYQWRKYGQKV--------TR--DNPSPRAYFKCS 183 (321)
Q Consensus 157 ~DGy~WRKYGQK~--------ik--gnp~PRsYYrCs 183 (321)
.++++|-|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5678899888642 22 233499999995
No 70
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.02 E-value=77 Score=25.38 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020831 52 ELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMN 86 (321)
Q Consensus 52 EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~ 86 (321)
|+.++.+.-++|+.+|..+......|+..+.++..
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777766643
No 71
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.71 E-value=75 Score=21.11 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
+.|..|=..+..|..||+++|.
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 4467777777788888888774
No 72
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.55 E-value=76 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
++.|..|...+..|..||+++|.
T Consensus 10 VEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 10 GEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHc
Confidence 34577777888888888888874
No 73
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.94 E-value=68 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILC 71 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~ 71 (321)
+...|++||.+.+++++.+.++|++..
T Consensus 143 eiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 143 SIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777776666544
No 74
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.71 E-value=1.5e+02 Score=23.31 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCK 72 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~ 72 (321)
..|..++....+|+..|+.|+..+-+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777776665543
No 75
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.67 E-value=1.5e+02 Score=21.09 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEML 67 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL 67 (321)
...|+.++..+.+++..|+.-|
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665544
No 76
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=23.17 E-value=93 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 020831 61 KKLNEMLSILCKNYNNLRQQYMDLMNKN 88 (321)
Q Consensus 61 krL~~mL~~v~~nY~aLq~ql~~~~~~~ 88 (321)
-||+.-|..-+-.--+||.||..++..+
T Consensus 14 vkltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 14 VKLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3555555555666678999999998764
No 77
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.89 E-value=33 Score=24.70 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 020831 46 TGILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
...|..|+..+.+|+..|+.+|-
T Consensus 38 n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 38 NSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888774
No 78
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.70 E-value=1.2e+02 Score=20.26 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLS 68 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~ 68 (321)
+.|..|......|..||++||.
T Consensus 11 Eel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 11 EEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhc
Confidence 4477777778888888888885
No 79
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.65 E-value=1.3e+02 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020831 46 TGILVEELNRISTENKKLNEMLSILCKN 73 (321)
Q Consensus 46 ~~~L~~EL~Rv~eENkrL~~mL~~v~~n 73 (321)
+..|++||..+.++-+.|-+++..+..+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~ 35 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQ 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999888876554
No 80
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.22 E-value=2.7e+02 Score=22.29 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSI---LCKNYNNLRQQYMDL 84 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~---v~~nY~aLq~ql~~~ 84 (321)
++-...|++|+.++..|-.+|..+... +-++-.-|...|..+
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 443467999999999999888765543 344455556555554
No 81
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=21.99 E-value=1.4 Score=36.16 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020831 48 ILVEELNRISTENKKLNEMLSILCKNYNNLRQQYM 82 (321)
Q Consensus 48 ~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~ 82 (321)
.|+.|+.++..||.+|+.=++.+-..|.+|+.+..
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888899999888888899999986644
No 82
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.39 E-value=1.2e+02 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020831 45 ETGILVEELNRISTENKKLNEMLSILCKN 73 (321)
Q Consensus 45 ~~~~L~~EL~Rv~eENkrL~~mL~~v~~n 73 (321)
++..|+++|..-+++++.+.++|++....
T Consensus 45 TIDDLEDkL~~eKEK~k~i~eeLDqTL~E 73 (77)
T 3mtu_E 45 EYNDLEEKVAHAKEENLNMHQMLDQTLLE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888876543
No 83
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.57 E-value=1e+02 Score=23.03 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 020831 47 GILVEELNRISTENKKLNEMLSILCKNYNNLRQ 79 (321)
Q Consensus 47 ~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ 79 (321)
.+-++.+.++-.-|..|.+-|..|-..-..||.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 344444555545555555544444444444443
No 84
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.13 E-value=2.8e+02 Score=21.94 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQQYMDLMNK 87 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ql~~~~~~ 87 (321)
++....|...+..+.+.-++|.+-|..+.+.+..++..|.+++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466888888888888889999999999999999998888764
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.07 E-value=1.9e+02 Score=21.65 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 020831 43 KQETGILVEELNRISTENKKLNEMLSILCKNYNNLRQ 79 (321)
Q Consensus 43 ~e~~~~L~~EL~Rv~eENkrL~~mL~~v~~nY~aLq~ 79 (321)
++-+..|+.++..+..+|..|..-...+-.....|+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888877777777665433333333333333
Done!