Query 020832
Match_columns 321
No_of_seqs 114 out of 195
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3024 Uncharacterized conser 100.0 1.9E-76 4.1E-81 544.8 27.9 280 12-319 4-300 (312)
2 PF04190 DUF410: Protein of un 100.0 5.1E-73 1.1E-77 529.3 24.4 246 45-319 1-260 (260)
3 PF14938 SNAP: Soluble NSF att 98.4 1.3E-05 2.9E-10 75.6 17.3 230 27-299 48-279 (282)
4 KOG1586 Protein required for f 98.1 0.00036 7.8E-09 64.6 17.9 221 47-301 27-280 (288)
5 PF14938 SNAP: Soluble NSF att 95.7 1.6 3.5E-05 41.0 18.5 127 139-281 94-223 (282)
6 KOG1463 26S proteasome regulat 93.8 3.3 7.1E-05 40.8 15.3 224 16-281 6-237 (411)
7 TIGR02917 PEP_TPR_lipo putativ 93.4 11 0.00024 39.2 26.8 27 158-187 361-387 (899)
8 PRK15174 Vi polysaccharide exp 92.5 12 0.00026 39.7 18.9 68 158-243 316-383 (656)
9 COG3071 HemY Uncharacterized e 92.5 1.1 2.4E-05 44.5 10.2 43 139-188 311-353 (400)
10 COG2956 Predicted N-acetylgluc 92.1 3.9 8.5E-05 40.1 13.2 56 163-221 217-278 (389)
11 KOG3687 Tuberin - Rap/ran-GTPa 91.2 7.7 0.00017 43.0 15.3 215 29-305 40-294 (1697)
12 PRK11447 cellulose synthase su 91.1 27 0.00059 39.5 20.7 128 158-302 301-430 (1157)
13 PRK10866 outer membrane biogen 91.1 13 0.00028 34.5 15.9 72 13-87 31-102 (243)
14 TIGR02917 PEP_TPR_lipo putativ 91.0 22 0.00047 37.0 25.4 27 158-187 633-659 (899)
15 TIGR00990 3a0801s09 mitochondr 89.6 29 0.00062 36.2 22.5 93 207-305 463-556 (615)
16 PRK10747 putative protoheme IX 87.8 17 0.00038 35.8 14.4 43 139-188 311-353 (398)
17 TIGR00540 hemY_coli hemY prote 86.2 25 0.00053 34.8 14.5 40 141-187 318-359 (409)
18 PF13414 TPR_11: TPR repeat; P 86.1 2.6 5.7E-05 30.1 5.7 64 159-240 2-66 (69)
19 PF07719 TPR_2: Tetratricopept 85.6 1.3 2.8E-05 27.2 3.4 26 160-188 1-26 (34)
20 PLN03081 pentatricopeptide (PP 85.5 53 0.0011 34.8 21.1 166 37-241 262-455 (697)
21 PRK10049 pgaA outer membrane p 84.8 62 0.0013 34.9 18.9 68 158-243 391-458 (765)
22 COG5159 RPN6 26S proteasome re 84.5 39 0.00085 32.9 14.1 181 18-237 7-190 (421)
23 PF04190 DUF410: Protein of un 84.4 36 0.00078 31.9 17.0 79 25-106 1-80 (260)
24 PRK11788 tetratricopeptide rep 83.6 42 0.0009 32.0 23.8 26 159-187 213-238 (389)
25 PLN03218 maturation of RBCL 1; 81.7 96 0.0021 35.2 18.1 79 159-240 683-782 (1060)
26 COG2909 MalT ATP-dependent tra 81.0 31 0.00067 37.9 13.3 135 138-281 330-485 (894)
27 KOG1174 Anaphase-promoting com 79.2 17 0.00038 36.9 10.0 120 36-193 370-503 (564)
28 PRK10747 putative protoheme IX 78.8 70 0.0015 31.5 18.9 80 157-241 260-357 (398)
29 PRK00794 flbT flagellar biosyn 78.7 2.9 6.2E-05 35.6 3.9 32 12-43 91-122 (132)
30 PRK11788 tetratricopeptide rep 78.4 63 0.0014 30.8 18.7 27 158-187 139-165 (389)
31 KOG1585 Protein required for f 78.4 64 0.0014 30.8 18.3 218 14-278 9-251 (308)
32 PF08631 SPO22: Meiosis protei 78.1 60 0.0013 30.4 19.4 100 159-262 141-249 (278)
33 PF07378 FlbT: Flagellar prote 77.6 3.2 7E-05 35.0 3.9 33 11-43 88-120 (126)
34 PRK12791 flbT flagellar biosyn 77.3 2.9 6.3E-05 35.5 3.6 31 13-43 89-119 (131)
35 PF12895 Apc3: Anaphase-promot 76.4 1.7 3.7E-05 32.7 1.8 27 158-187 56-82 (84)
36 PF07721 TPR_4: Tetratricopept 76.1 3.7 8.1E-05 24.4 2.9 24 160-186 1-24 (26)
37 PF13429 TPR_15: Tetratricopep 75.3 21 0.00047 32.8 9.2 86 208-305 143-228 (280)
38 KOG3616 Selective LIM binding 73.3 64 0.0014 35.3 12.7 44 14-57 824-873 (1636)
39 TIGR03302 OM_YfiO outer membra 71.3 74 0.0016 28.2 18.5 70 13-85 32-101 (235)
40 PRK10803 tol-pal system protei 71.2 26 0.00057 32.9 8.8 70 160-244 180-249 (263)
41 KOG1840 Kinesin light chain [C 70.4 1.4E+02 0.003 31.0 26.5 256 12-304 196-486 (508)
42 cd00189 TPR Tetratricopeptide 69.9 33 0.00071 23.6 8.0 27 159-188 67-93 (100)
43 KOG2066 Vacuolar assembly/sort 69.6 61 0.0013 35.3 11.7 171 18-203 360-545 (846)
44 COG1729 Uncharacterized protei 69.2 59 0.0013 30.8 10.6 71 159-245 177-248 (262)
45 KOG1840 Kinesin light chain [C 66.9 1.7E+02 0.0036 30.5 17.8 156 30-205 321-482 (508)
46 TIGR00990 3a0801s09 mitochondr 65.9 99 0.0021 32.2 12.6 132 158-304 329-480 (615)
47 PRK14574 hmsH outer membrane p 65.7 2.2E+02 0.0047 31.4 17.4 27 157-186 99-125 (822)
48 TIGR02552 LcrH_SycD type III s 62.9 61 0.0013 25.8 8.4 67 158-242 49-115 (135)
49 TIGR02552 LcrH_SycD type III s 62.4 78 0.0017 25.2 11.5 26 159-187 84-109 (135)
50 PRK09782 bacteriophage N4 rece 61.9 2.5E+02 0.0053 31.7 15.3 28 158-188 675-702 (987)
51 PF13181 TPR_8: Tetratricopept 60.6 14 0.00031 22.4 3.3 25 161-188 2-26 (34)
52 PLN03077 Protein ECB2; Provisi 60.5 2.5E+02 0.0055 30.5 17.1 114 36-188 224-348 (857)
53 PLN03088 SGT1, suppressor of 59.2 1.1E+02 0.0024 29.8 10.9 60 17-82 5-64 (356)
54 PF07575 Nucleopor_Nup85: Nup8 58.0 18 0.00038 37.7 5.3 145 19-200 302-465 (566)
55 PF13432 TPR_16: Tetratricopep 58.0 61 0.0013 22.5 7.7 61 165-243 2-62 (65)
56 TIGR02795 tol_pal_ybgF tol-pal 58.0 82 0.0018 24.0 10.1 26 159-187 75-100 (119)
57 PF13512 TPR_18: Tetratricopep 57.0 1.2E+02 0.0027 26.0 9.4 93 14-110 10-133 (142)
58 PF14561 TPR_20: Tetratricopep 56.8 27 0.00058 27.4 5.0 55 54-111 22-76 (90)
59 smart00028 TPR Tetratricopepti 55.6 13 0.00028 20.5 2.4 24 161-187 2-25 (34)
60 TIGR00756 PPR pentatricopeptid 54.8 18 0.00039 21.5 3.1 24 36-59 2-25 (35)
61 PF13428 TPR_14: Tetratricopep 54.1 16 0.00035 24.1 2.9 25 160-187 1-25 (44)
62 PF03745 DUF309: Domain of unk 53.8 12 0.00027 27.4 2.4 26 18-43 3-28 (62)
63 PF14559 TPR_19: Tetratricopep 53.8 20 0.00043 25.2 3.6 47 25-77 2-48 (68)
64 PRK10370 formate-dependent nit 53.5 1.6E+02 0.0035 26.1 13.5 27 158-187 142-168 (198)
65 PLN03077 Protein ECB2; Provisi 53.4 3.3E+02 0.0071 29.6 17.5 113 36-187 325-448 (857)
66 PLN03081 pentatricopeptide (PP 52.1 3.1E+02 0.0068 29.0 16.9 62 36-101 160-232 (697)
67 PF07579 DUF1548: Domain of Un 49.9 1.6E+02 0.0036 25.1 8.8 91 10-103 23-113 (135)
68 PF10475 DUF2450: Protein of u 49.3 58 0.0013 30.9 7.0 47 41-87 134-180 (291)
69 cd00189 TPR Tetratricopeptide 49.2 72 0.0016 21.7 6.0 63 159-239 33-95 (100)
70 PRK10803 tol-pal system protei 49.1 82 0.0018 29.6 7.9 69 15-86 143-212 (263)
71 PF09976 TPR_21: Tetratricopep 49.0 1.5E+02 0.0033 24.4 13.4 27 158-187 116-142 (145)
72 PRK15174 Vi polysaccharide exp 48.8 3.6E+02 0.0077 28.6 23.5 60 16-81 44-103 (656)
73 PF14559 TPR_19: Tetratricopep 48.6 25 0.00055 24.7 3.4 40 139-188 11-50 (68)
74 PF00515 TPR_1: Tetratricopept 48.6 30 0.00065 21.0 3.4 25 160-187 1-25 (34)
75 PF12854 PPR_1: PPR repeat 48.3 30 0.00065 21.8 3.3 23 36-58 9-31 (34)
76 PF13371 TPR_9: Tetratricopept 47.4 36 0.00078 24.2 4.1 38 139-186 15-52 (73)
77 COG1729 Uncharacterized protei 46.6 1.2E+02 0.0026 28.8 8.4 86 21-111 148-250 (262)
78 PF13429 TPR_15: Tetratricopep 46.1 1.4E+02 0.0031 27.3 9.0 27 158-187 212-238 (280)
79 PF04053 Coatomer_WDAD: Coatom 45.9 2.4E+02 0.0052 28.7 11.1 151 14-202 261-428 (443)
80 PF12569 NARP1: NMDA receptor- 45.8 2.5E+02 0.0054 29.2 11.3 131 159-303 3-171 (517)
81 PRK15359 type III secretion sy 44.8 1.8E+02 0.004 24.1 11.9 121 139-298 13-133 (144)
82 KOG2376 Signal recognition par 43.2 4.4E+02 0.0096 28.1 13.0 87 148-241 163-253 (652)
83 PF13432 TPR_16: Tetratricopep 42.8 70 0.0015 22.2 5.0 55 22-82 5-59 (65)
84 CHL00033 ycf3 photosystem I as 40.7 2.2E+02 0.0048 23.9 11.2 121 159-299 34-166 (168)
85 KOG2300 Uncharacterized conser 40.5 96 0.0021 32.3 7.1 81 142-237 346-429 (629)
86 KOG2280 Vacuolar assembly/sort 39.7 5.5E+02 0.012 28.2 16.8 149 39-242 442-602 (829)
87 KOG4340 Uncharacterized conser 39.1 4E+02 0.0086 26.4 11.4 29 24-59 7-35 (459)
88 PF13525 YfiO: Outer membrane 38.9 2.7E+02 0.0059 24.5 17.9 71 15-88 6-76 (203)
89 PRK11447 cellulose synthase su 38.9 6.3E+02 0.014 28.7 24.5 28 158-188 179-206 (1157)
90 TIGR00540 hemY_coli hemY prote 38.7 3.9E+02 0.0085 26.2 21.1 117 158-305 261-384 (409)
91 PRK12370 invasion protein regu 38.7 4.6E+02 0.01 27.0 18.3 25 158-185 439-463 (553)
92 PF13374 TPR_10: Tetratricopep 38.6 70 0.0015 19.8 4.1 28 37-64 5-32 (42)
93 TIGR02795 tol_pal_ybgF tol-pal 38.4 1.3E+02 0.0028 22.8 6.4 62 18-82 6-67 (119)
94 COG1516 FliS Flagellin-specifi 37.5 65 0.0014 27.4 4.6 59 33-106 6-64 (132)
95 PRK10370 formate-dependent nit 36.9 3E+02 0.0065 24.3 13.8 69 158-243 71-141 (198)
96 KOG2003 TPR repeat-containing 36.6 5.2E+02 0.011 27.0 13.0 191 45-301 409-602 (840)
97 cd01040 globin Globins are hem 36.1 1.4E+02 0.0029 23.9 6.4 87 213-305 5-96 (140)
98 cd00390 Urease_gamma Urease ga 36.1 79 0.0017 25.5 4.6 47 41-89 17-66 (96)
99 COG5443 FlbT Flagellar biosynt 34.9 31 0.00067 29.4 2.3 30 14-43 94-123 (148)
100 PF14003 YlbE: YlbE-like prote 34.9 49 0.0011 24.8 3.1 40 282-321 16-64 (65)
101 PF13431 TPR_17: Tetratricopep 34.1 51 0.0011 20.8 2.7 23 158-183 11-33 (34)
102 PF13838 Clathrin_H_link: Clat 33.7 64 0.0014 24.2 3.6 26 33-58 5-30 (66)
103 KOG3060 Uncharacterized conser 33.5 4.4E+02 0.0096 25.3 13.2 129 34-186 86-214 (289)
104 PF13174 TPR_6: Tetratricopept 33.5 66 0.0014 18.9 3.2 24 221-244 9-32 (33)
105 KOG2796 Uncharacterized conser 32.4 4.1E+02 0.0089 25.8 9.5 137 56-243 179-317 (366)
106 PF13371 TPR_9: Tetratricopept 32.3 1.8E+02 0.0039 20.4 6.5 36 207-243 25-60 (73)
107 PF01535 PPR: PPR repeat; Int 31.6 64 0.0014 18.6 2.8 23 36-58 2-24 (31)
108 cd05804 StaR_like StaR_like; a 31.6 4.3E+02 0.0094 24.6 13.7 67 159-239 147-213 (355)
109 COG3160 Rsd Regulator of sigma 30.6 1.8E+02 0.0038 25.3 6.1 33 251-283 51-83 (162)
110 TIGR00193 urease_gam urease, g 28.9 1.3E+02 0.0027 24.6 4.7 48 40-89 19-69 (102)
111 PF13176 TPR_7: Tetratricopept 28.7 75 0.0016 20.0 2.9 22 163-187 2-23 (36)
112 PRK13242 ureA urease subunit g 28.7 1.3E+02 0.0028 24.4 4.7 48 40-89 19-69 (100)
113 PRK13241 ureA urease subunit g 28.3 1.3E+02 0.0027 24.5 4.6 48 40-89 19-69 (100)
114 PF10366 Vps39_1: Vacuolar sor 27.9 55 0.0012 26.5 2.6 31 32-62 37-67 (108)
115 PF11817 Foie-gras_1: Foie gra 27.4 2.6E+02 0.0055 25.7 7.3 49 40-88 184-232 (247)
116 PF10475 DUF2450: Protein of u 27.2 69 0.0015 30.4 3.6 44 29-86 116-159 (291)
117 KOG1925 Rac1 GTPase effector F 26.9 4.5E+02 0.0097 27.6 9.3 45 221-265 479-527 (817)
118 PF14223 UBN2: gag-polypeptide 26.7 3.2E+02 0.007 21.6 8.0 73 33-107 3-78 (119)
119 PRK15379 pathogenicity island 26.7 3.9E+02 0.0086 25.7 8.3 85 136-233 142-228 (317)
120 PF14561 TPR_20: Tetratricopep 26.6 2.1E+02 0.0046 22.2 5.7 64 35-103 23-89 (90)
121 PLN03088 SGT1, suppressor of 26.4 6.1E+02 0.013 24.6 10.1 56 167-240 9-64 (356)
122 KOG0548 Molecular co-chaperone 26.3 4.7E+02 0.01 27.4 9.4 110 164-302 362-471 (539)
123 PF13041 PPR_2: PPR repeat fam 25.5 1.1E+02 0.0023 20.4 3.4 18 84-101 29-46 (50)
124 COG3118 Thioredoxin domain-con 25.1 2.1E+02 0.0046 27.7 6.4 54 55-111 237-290 (304)
125 PF13424 TPR_12: Tetratricopep 24.6 2.7E+02 0.0058 19.9 6.7 54 35-88 6-60 (78)
126 PRK15359 type III secretion sy 24.6 4.1E+02 0.0088 22.0 10.1 40 139-188 78-117 (144)
127 PF10791 F1F0-ATPsyn_F: Mitoch 24.5 1.7E+02 0.0038 23.5 4.7 55 91-171 27-84 (95)
128 PF13525 YfiO: Outer membrane 24.5 4.9E+02 0.011 22.9 11.6 58 219-283 49-123 (203)
129 PF08625 Utp13: Utp13 specific 24.0 1.8E+02 0.004 24.7 5.3 13 139-151 64-76 (141)
130 PF12862 Apc5: Anaphase-promot 23.9 3.4E+02 0.0073 20.8 9.7 67 21-88 5-75 (94)
131 PF13812 PPR_3: Pentatricopept 23.9 1.3E+02 0.0029 17.6 3.4 23 36-58 3-25 (34)
132 TIGR01641 phageSPP1_gp7 phage 23.6 2.2E+02 0.0048 22.4 5.4 42 13-55 14-55 (108)
133 PRK09782 bacteriophage N4 rece 23.4 1.1E+03 0.024 26.6 20.3 83 18-108 346-428 (987)
134 COG5010 TadD Flp pilus assembl 22.4 5.2E+02 0.011 24.5 8.3 29 158-189 98-126 (257)
135 PF14227 UBN2_2: gag-polypepti 21.8 4.1E+02 0.0089 21.0 6.8 69 33-109 4-78 (119)
136 PRK11189 lipoprotein NlpI; Pro 21.4 5.4E+02 0.012 24.1 8.5 28 158-188 96-123 (296)
137 TIGR02878 spore_ypjB sporulati 21.4 1.2E+02 0.0025 28.4 3.7 27 42-68 13-39 (233)
138 PF11934 DUF3452: Domain of un 21.3 69 0.0015 27.0 2.1 34 251-284 94-127 (136)
139 PRK14720 transcript cleavage f 21.2 1.2E+03 0.026 26.2 21.5 42 255-297 243-284 (906)
140 PF02847 MA3: MA3 domain; Int 21.1 4E+02 0.0088 20.7 7.9 90 178-270 17-112 (113)
141 PRK12370 invasion protein regu 20.9 9.2E+02 0.02 24.8 17.1 91 139-240 324-434 (553)
142 PF03540 TFIID_30kDa: Transcri 20.6 2E+02 0.0044 20.4 4.0 22 83-104 11-32 (51)
143 PF10938 YfdX: YfdX protein; 20.6 2.8E+02 0.0061 23.9 5.8 28 13-40 74-101 (155)
144 PF07575 Nucleopor_Nup85: Nup8 20.5 1.7E+02 0.0036 30.5 5.1 68 25-99 416-483 (566)
145 PRK10866 outer membrane biogen 20.4 6.7E+02 0.014 23.0 10.6 70 156-244 28-101 (243)
146 smart00667 LisH Lissencephaly 20.3 1.7E+02 0.0037 17.3 3.3 21 215-235 6-26 (34)
No 1
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-76 Score=544.80 Aligned_cols=280 Identities=32% Similarity=0.526 Sum_probs=264.8
Q ss_pred ChhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCC
Q 020832 12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY 91 (321)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~ 91 (321)
.+++|++.|++++|+-|+||||||||||+++||+++|+|++|++|+++||+.|++.+|.+||+||+++++|||+++.+..
T Consensus 4 ~~~~R~e~kl~a~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad 83 (312)
T KOG3024|consen 4 FTLQRVEGKLRASIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVAD 83 (312)
T ss_pred hHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 020832 92 DNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLY 171 (321)
Q Consensus 92 ~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~ 171 (321)
+..++.|+.+++..+++++|+| ++||++||+||++.|++|+|||+||.++|.++|
T Consensus 84 ~~~~~anl~~ll~e~~~~eper-------------------------~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~ 138 (312)
T KOG3024|consen 84 SLLKVANLAELLGEADPSEPER-------------------------KTFVRRAIKWSKEFGEGKYGHPELHALLADKLW 138 (312)
T ss_pred hHHHHHHHHHHHhhcCCCccHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 8889999999999999999877 999999999999998899999999999999999
Q ss_pred hcCCCCChHHHhhHhhcCCChHHHHH-HHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHH----------
Q 020832 172 SESPELDMARVSFHFVRGNNPEKFAS-TIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK---------- 240 (321)
Q Consensus 172 ~e~~~~~~~~A~~Hfl~~~~~~~~a~-~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~---------- 240 (321)
+++ ++++|++||++|+|++.||. +++.|+.++..+|.|.|++|+||||||+.|..+|...+.+|++
T Consensus 139 ~e~---~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~ 215 (312)
T KOG3024|consen 139 TED---NVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMD 215 (312)
T ss_pred hcc---cHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccch
Confidence 999 99999999999999999999 6677999999999999999999999999999999999999998
Q ss_pred --Hhhhh--ccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHHHhcCCCCCC--CchHhH
Q 020832 241 --QVENK--QLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFFGVKRRN--PMQGIF 314 (321)
Q Consensus 241 --~~~~~--~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~~yFgi~~~~--~l~~m~ 314 (321)
.+.+. .+.|..+|+|||+|+|+.||++++.+.|..||.+|+++|+||+.|++||++||++||||+|++ +++|||
T Consensus 216 e~~~~~~~k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFgi~~~~~~slgglf 295 (312)
T KOG3024|consen 216 EIKHKAGTKNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFGIRPKQPLSLGGLF 295 (312)
T ss_pred hhcccccccCCCccccchHHHHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcCCCCCccccHhhHH
Confidence 33321 335568999999999999999999999999999999999999999999999999999999864 367999
Q ss_pred HHhhh
Q 020832 315 GDIFK 319 (321)
Q Consensus 315 ~~lf~ 319 (321)
|+||+
T Consensus 296 gdlfs 300 (312)
T KOG3024|consen 296 GDLFS 300 (312)
T ss_pred HHHhc
Confidence 99985
No 2
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=100.00 E-value=5.1e-73 Score=529.33 Aligned_cols=246 Identities=39% Similarity=0.667 Sum_probs=200.3
Q ss_pred hhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHH
Q 020832 45 VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHEL 124 (321)
Q Consensus 45 ~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~ 124 (321)
|+++||+||+||||+||..|+++||++||+||++++||||+++++++|+++++||++|++.+|+++|+|
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r----------- 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER----------- 69 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH-----------
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH-----------
Confidence 689999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHH--HHHHH
Q 020832 125 TEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFAS--TIVNF 202 (321)
Q Consensus 125 ~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~--~L~ew 202 (321)
++|+++||+|| +.|++|+|||+||+++|++||+|+ +|.+|++|||+|+|++.++. ++++|
T Consensus 70 --------------~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~---~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 70 --------------KKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEG---NYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp --------------HHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT----HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhc---cHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 99999999999 788899999999999999999999 99999999999999998887 88899
Q ss_pred hhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh----hhhc----cCCCCChhhhHHHHHHHHhccCChhHHH
Q 020832 203 MGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQV----ENKQ----LQLQPSDLIQFVFYVLQTLERDALPLFN 274 (321)
Q Consensus 203 ~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~----~~~~----~~~~~~PlLnF~~lLl~t~e~~~~~~F~ 274 (321)
..+|+++|.|+|++|+||||||++|+++|+++++.|++++ |+.. .+|+++|+|||+|||++|||+++.++|+
T Consensus 132 ~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~ 211 (260)
T PF04190_consen 132 STKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFK 211 (260)
T ss_dssp HHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHH
T ss_pred HHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHH
Confidence 9999999999999999999999999999999999999994 3222 2456899999999999999999999999
Q ss_pred HHHHHhHHhhhcchhHHHHHHHHHHHhcCCCCC----CCchHhHHHhhh
Q 020832 275 MLRANYKASIEREPAFNEMLDDIAEKFFGVKRR----NPMQGIFGDIFK 319 (321)
Q Consensus 275 ~L~~~Y~~~l~rd~~~~~~L~~Ig~~yFgi~~~----~~l~~m~~~lf~ 319 (321)
.||++|+++|+|||+|.++||+||++||||+|+ |+|+||||+|||
T Consensus 212 ~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~~~~~~~~l~~mm~~lfg 260 (260)
T PF04190_consen 212 KLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQPPQQQNGMLGDMMSGLFG 260 (260)
T ss_dssp HHHHHTHH---HHHHTHHHHHHHHHHHH---S-----------------
T ss_pred HHHHHhCccccccHHHHHHHHHHHHHHCCCCCCCCCCchHHHHHHhhcC
Confidence 999999999999999999999999999999863 257778887775
No 3
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=1.3e-05 Score=75.58 Aligned_cols=230 Identities=15% Similarity=0.099 Sum_probs=141.1
Q ss_pred cCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCCh-hHHHHHHHHHHh
Q 020832 27 EGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN-ENLDRVRKIYEL 105 (321)
Q Consensus 27 ~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~-~~~~rl~~l~~~ 105 (321)
.|+|-+|-..|....--+.+.+...+|-..+.+.+..+-+. ++..+.+....-+++|.+.|-+-.. ....++.++++.
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555544443333 5555555555555666555533332 233445555432
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhH
Q 020832 106 FPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFH 185 (321)
Q Consensus 106 ~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (321)
-. .. ..++ ..+..+|+.|-...+ .+....+....+|.++.+.+ +|.+|...
T Consensus 127 ~~-~d-------------~e~A-----------i~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~---~y~~A~~~ 177 (282)
T PF14938_consen 127 QL-GD-------------YEKA-----------IEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG---RYEEAIEI 177 (282)
T ss_dssp TT----------------HHHH-----------HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred Hc-CC-------------HHHH-----------HHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence 10 00 1122 667777888776555 33445577788999999999 99998866
Q ss_pred hhcCCChHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHH
Q 020832 186 FVRGNNPEKFASTIVNFMGKC-YPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQT 264 (321)
Q Consensus 186 fl~~~~~~~~a~~L~ew~~~~-~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t 264 (321)
|-- +........ ......=+..++||.+|+.++.-.|...++.|... .+.|.++.--.|+.-|+.+
T Consensus 178 ~e~---------~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~----~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 178 YEE---------VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ----DPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHH---------HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT----STTSTTSHHHHHHHHHHHH
T ss_pred HHH---------HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCCCcHHHHHHHHHHHH
Confidence 531 111110100 11122237788999999999999999999998874 3456678889999999999
Q ss_pred hccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHH
Q 020832 265 LERDALPLFNMLRANYKASIEREPAFNEMLDDIAE 299 (321)
Q Consensus 265 ~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~ 299 (321)
|+.++.+.|+..+..|...-+=||--...|-+|.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~ 279 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKK 279 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 99999999999999999988888777778888765
No 4
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00036 Score=64.62 Aligned_cols=221 Identities=14% Similarity=0.183 Sum_probs=145.0
Q ss_pred hhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHH
Q 020832 47 AQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTE 126 (321)
Q Consensus 47 ~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e 126 (321)
.+||+||.||+.+++..+==.++|+.|+|--+-.-+..-+.+-+= +.-.-.++-.+.+....|. |
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skh--Daat~YveA~~cykk~~~~-------------e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKH--DAATTYVEAANCYKKVDPE-------------E 91 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHHHHhhccChH-------------H
Confidence 347777777777777776666677777766555556555555222 2233444455555544432 2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhc-CCCCChHHHhhHhhcCCC-----hH-------
Q 020832 127 ALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SPELDMARVSFHFVRGNN-----PE------- 193 (321)
Q Consensus 127 ~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~~~~~~~A~~Hfl~~~~-----~~------- 193 (321)
+ ...+.+||.--...|....+. .-|.-||++|=.+ . ++.+|..|+=.+.+ .+
T Consensus 92 A-----------v~cL~~aieIyt~~Grf~~aA-k~~~~iaEiyEsdl~---d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 92 A-----------VNCLEKAIEIYTDMGRFTMAA-KHHIEIAEIYESDLQ---DFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred H-----------HHHHHHHHHHHHhhhHHHHHH-hhhhhHHHHHhhhHH---HHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 2 667777777666666433333 5688899998777 5 77778877764322 11
Q ss_pred -----HHHHHHHHHhh------c------cCC---ChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCCh
Q 020832 194 -----KFASTIVNFMG------K------CYP---GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSD 253 (321)
Q Consensus 194 -----~~a~~L~ew~~------~------~~~---~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~P 253 (321)
.++..+-++.+ + +++ --.--+..++-|.+||..+.-.|+..++.|.+ ..|.|.++.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~----~dP~F~dsR 232 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE----LDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh----cCCcccccH
Confidence 12222222221 0 000 01122788999999999999999999988887 445677888
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHHHh
Q 020832 254 LIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKF 301 (321)
Q Consensus 254 lLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~~y 301 (321)
-.+|+.=|+.+++.++...|+.-+..|...-+-|.=.-..|-+|+...
T Consensus 233 Eckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~si 280 (288)
T KOG1586|consen 233 ECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSI 280 (288)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887766644456788887643
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.65 E-value=1.6 Score=41.04 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhc-CCCCChHHHhhHhhcCCChHHHHHHHHHHhh-ccCCChhHHHHH
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SPELDMARVSFHFVRGNNPEKFASTIVNFMG-KCYPGEDDLAVA 216 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~-~~~~~e~dlfi~ 216 (321)
...+++|+.--.+.|. +.+-...+..+|++|-+. + ++.+|..|+-.+ .+++. .+.+....-.+.
T Consensus 94 i~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A----------~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 94 IECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLG---DYEKAIEYYQKA----------AELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHH----------HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHH----------HHHHHHCCChhhHHHHHH
Confidence 4555666655444442 233447899999999998 8 999998776532 33333 222233333555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhh-hHHHHHHHHhccCChhHHHHHHHHhH
Q 020832 217 RAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLI-QFVFYVLQTLERDALPLFNMLRANYK 281 (321)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlL-nF~~lLl~t~e~~~~~~F~~L~~~Y~ 281 (321)
+..--+..+++...|..+|+......... +...+..= .|+.-+|..+-.++....+...+.|.
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666788899999999987766532211 11111111 23444555555566555555555554
No 6
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=3.3 Score=40.78 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=132.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHH----HHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCC
Q 020832 16 ENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEAL----DLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY 91 (321)
Q Consensus 16 r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi----~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~ 91 (321)
-+..+.+..++...+=+|.+.|+.+.+.--...+-++.+ +.+.+-...|.+.|+...-.||...+=..+..-
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---- 81 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV---- 81 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh----
Confidence 347888888899888899999999888532233334444 445555667789999988888866665555433
Q ss_pred ChhHHHH-HHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 020832 92 DNENLDR-VRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYL 170 (321)
Q Consensus 92 ~~~~~~r-l~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~ 170 (321)
+..-..+ +..|+..|+..+.. . ++ ...+.+.||.|..... .++=.-.|.-.+...|
T Consensus 82 ~KakaaKlvR~Lvd~~~~~~~~--~---~~-----------------~i~l~~~cIeWA~~ek-RtFLRq~Learli~Ly 138 (411)
T KOG1463|consen 82 SKAKAAKLVRSLVDMFLKIDDG--T---GD-----------------QIELCTECIEWAKREK-RTFLRQSLEARLIRLY 138 (411)
T ss_pred hhHHHHHHHHHHHHHHccCCCC--c---ch-----------------HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 3333333 34777777755421 1 11 1788899999998643 2233446777788888
Q ss_pred HhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCC---ChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhcc
Q 020832 171 YSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP---GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQL 247 (321)
Q Consensus 171 ~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~---~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~ 247 (321)
+.-+ .|.+|. ...++++-|.-+-..+ -|..+.=+.+ |-.++|+.-|+..+..-....+++..
T Consensus 139 ~d~~---~YteAl---------aL~~~L~rElKKlDDK~lLvev~llESK~---y~~l~Nl~KakasLTsART~AnaiYc 203 (411)
T KOG1463|consen 139 NDTK---RYTEAL---------ALINDLLRELKKLDDKILLVEVHLLESKA---YHALRNLPKAKASLTSARTTANAIYC 203 (411)
T ss_pred HhhH---HHHHHH---------HHHHHHHHHHHhcccccceeeehhhhhHH---HHHHhcchhHHHHHHHHHHhhccccc
Confidence 8889 898886 2334455555332211 2333333332 45678888888887665444444433
Q ss_pred CCCCChhhhHHHHHHHHhccCChhHHHHHHHHhH
Q 020832 248 QLQPSDLIQFVFYVLQTLERDALPLFNMLRANYK 281 (321)
Q Consensus 248 ~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~ 281 (321)
||.-+.-|-...=++.+-+++=...|.-..+.|.
T Consensus 204 pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred CHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 3322222333333444444443445555555554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.43 E-value=11 Score=39.18 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
+++.....+|..+.+.+ ++.+|...|-
T Consensus 361 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 387 (899)
T TIGR02917 361 DDPAALSLLGEAYLALG---DFEKAAEYLA 387 (899)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 46677777777777777 7777766664
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=92.51 E-value=12 Score=39.70 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~ 237 (321)
.+|..|..+|.+|.+.| ++.+|..+|-.. + ...|.....+..++ ..+...|+...|...|+.
T Consensus 316 ~~~~a~~~La~~l~~~G---~~~eA~~~l~~a---------l-----~~~P~~~~~~~~~a-~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 316 DLPYVRAMYARALRQVG---QYTAASDEFVQL---------A-----REKGVTSKWNRYAA-AALLQAGKTSEAESVFEH 377 (656)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHH---------H-----HhCccchHHHHHHH-HHHHHCCCHHHHHHHHHH
Confidence 36777888888888888 888887776210 0 01122222222222 234556777777777666
Q ss_pred HHHHhh
Q 020832 238 VKKQVE 243 (321)
Q Consensus 238 f~~~~~ 243 (321)
..+..|
T Consensus 378 al~~~P 383 (656)
T PRK15174 378 YIQARA 383 (656)
T ss_pred HHHhCh
Confidence 665544
No 9
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.51 E-value=1.1 Score=44.54 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
.+.++.+=+|-+.+++ +|.|+..+|..+++++ .+.+|+.||=.
T Consensus 311 ~~l~k~~e~~l~~h~~----~p~L~~tLG~L~~k~~---~w~kA~~~lea 353 (400)
T COG3071 311 EPLIKAAEKWLKQHPE----DPLLLSTLGRLALKNK---LWGKASEALEA 353 (400)
T ss_pred hHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 6677778888888775 7799999999999999 99999998863
No 10
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.12 E-value=3.9 Score=40.06 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCCChHHHhhHhh--cCCChH---HHHHHHHHHhhc-cCCChhHHHHHHHHHH
Q 020832 163 HVMLAEYLYSESPELDMARVSFHFV--RGNNPE---KFASTIVNFMGK-CYPGEDDLAVARAILM 221 (321)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl--~~~~~~---~~a~~L~ew~~~-~~~~e~dlfi~RaVL~ 221 (321)
.-.+|.+....| +|..|..++= .-.||+ +..++|.+++.+ |.+.|.-.|+.|++=.
T Consensus 217 si~lG~v~~~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 217 SIILGRVELAKG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hhhhhHHHHhcc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 456788888899 9999999884 567776 666778887754 5667777788877643
No 11
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=91.17 E-value=7.7 Score=43.00 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=117.7
Q ss_pred ChhHHHHHHHHHHHHHhhhhCHHH-HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCC
Q 020832 29 NFYGAQQMYKSISARYVAAQRYSE-ALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFP 107 (321)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~~k~~e-Ai~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p 107 (321)
-+=.-|||+|.++--... ++|+| ||+.|++...-|..-+..+.+-+++.-+..-|....-+-..-.++.+...++..|
T Consensus 40 P~~~R~rmi~~i~~~~k~-~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~FF~vI~~~p 118 (1697)
T KOG3687|consen 40 PLNNRIRMIGQICEVAKT-KKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRALFFKVIKDYP 118 (1697)
T ss_pred cHHHHHHHHHHHHhhHhh-hcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCc
Confidence 445568999999887766 67777 9999999999999888888877776666554433321111111223333333222
Q ss_pred CCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHH--HHHhcCCCCChHHHhhH
Q 020832 108 QIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAE--YLYSESPELDMARVSFH 185 (321)
Q Consensus 108 ~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~--~~~~e~~~~~~~~A~~H 185 (321)
.. .+||+.+-. .+-.+| +|
T Consensus 119 ~~--------------------------------------------------edL~~rLe~L~~LTDnG---------~~ 139 (1697)
T KOG3687|consen 119 SN--------------------------------------------------EDLHERLEVLKALTDNG---------RH 139 (1697)
T ss_pred ch--------------------------------------------------HHHHHHHHHHHHHhhCC---------cc
Confidence 11 345554422 112222 11
Q ss_pred hhcCCChHHHHHHHHHHhhcc---------------CCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhcc--C
Q 020832 186 FVRGNNPEKFASTIVNFMGKC---------------YPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQL--Q 248 (321)
Q Consensus 186 fl~~~~~~~~a~~L~ew~~~~---------------~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~--~ 248 (321)
. +.-.+.+++++..|+..+ +....|-+|+|.+.|..|.--.++|+..=-.....+.-... -
T Consensus 140 I--t~~Ee~iG~f~l~W~~~~l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~~c~lc~~t~~~i~~~~l~~l~~v~~y~~ 217 (1697)
T KOG3687|consen 140 I--TYLEEELGDFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIARLMVQMICLLCVRTASSVDIEVLQVLDAVVCYNC 217 (1697)
T ss_pred c--cchHHHHHHHHHHHHHhhcccHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccccchhhhhhhhhheeeee
Confidence 1 111235566666665433 12345668999999988877666665442222222221111 2
Q ss_pred CCCChhhhHHHHHHHHhccCC--hhHHHHHHHHhHHhhhc------------------chhHHHHHHHHHHHhcCCC
Q 020832 249 LQPSDLIQFVFYVLQTLERDA--LPLFNMLRANYKASIER------------------EPAFNEMLDDIAEKFFGVK 305 (321)
Q Consensus 249 ~~~~PlLnF~~lLl~t~e~~~--~~~F~~L~~~Y~~~l~r------------------d~~~~~~L~~Ig~~yFgi~ 305 (321)
+|..|+.+|+--|-+|+.... .+-|+..+.--.+.|.. .|-+...+=.+|...||-.
T Consensus 218 ~P~e~lpQ~I~tlcrt~nv~~~C~~~~k~m~nllgthlg~~~~~~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~ 294 (1697)
T KOG3687|consen 218 LPAESLPQFIVTLCRTINVKELCEPCWKLMRNLLGTHLGHSAIYNMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAH 294 (1697)
T ss_pred cccchHHHHHHHHhcccchhhcCchHHHHHHhhhhcccchHHHHHHHhhhhhhhhhccchhhcchhhhcchhhcccc
Confidence 467788888777766664433 24555555444443322 2444445555666666654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.08 E-value=27 Score=39.51 Aligned_cols=128 Identities=12% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcC--CChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG--NNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIM 235 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~--~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~ 235 (321)
.+++.|..+|.+|.+.+ ++.+|+.+|-.. .+|+.. -...|..........+.+.++ -.++..++...|...+
T Consensus 301 ~~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~--~~~~~~~ll~~~~~~~~~~~g-~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 301 KDSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSS--NRDKWESLLKVNRYWLLIQQG-DAALKANNLAQAERLY 374 (1157)
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcc--chhHHHHHHHhhhHHHHHHHH-HHHHHCCCHHHHHHHH
Confidence 57899999999999999 999999888532 222200 001121100000111111111 2345678888888887
Q ss_pred HHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHHHhc
Q 020832 236 DEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFF 302 (321)
Q Consensus 236 ~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~~yF 302 (321)
....+..|. ....+++...++ ...+ -+..-.+.|+..++.+|.....+..++.+|-
T Consensus 375 ~~Al~~~P~-----~~~a~~~Lg~~~---~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 375 QQARQVDNT-----DSYAVLGLGDVA---MARK---DYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHhCCC-----CHHHHHHHHHHH---HHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 776654221 111222222221 1122 2333456677777766666666666666553
No 13
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.06 E-value=13 Score=34.45 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Q 020832 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (321)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~ 87 (321)
..+..-.+-...+++|+|-+|-..++.+..+|... ..+....+.-+....+.+++..|....--+++.+..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 35556677788899999999999999999999866 3454556667778888889888888877777776655
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.03 E-value=22 Score=37.04 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.++..+..+|..|.+.+ ++.+|..+|-
T Consensus 633 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 659 (899)
T TIGR02917 633 DSALALLLLADAYAVMK---NYAKAITSLK 659 (899)
T ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 36677888888888888 8888887774
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.61 E-value=29 Score=36.19 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccC-CCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhh
Q 020832 207 YPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQ-LQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIE 285 (321)
Q Consensus 207 ~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~-~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~ 285 (321)
.|...+.+...+.+ ++..|+...|...|+.....-+..... ....|++|-...+. + ...-|..-.+.|+..+.
T Consensus 463 ~P~~~~~~~~lg~~-~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~---~--~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 463 FPEAPDVYNYYGEL-LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF---Q--WKQDFIEAENLCEKALI 536 (615)
T ss_pred CCCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH---H--HhhhHHHHHHHHHHHHh
Confidence 34445555544443 466899999999888776543321110 01122222221111 1 11244445566666676
Q ss_pred cchhHHHHHHHHHHHhcCCC
Q 020832 286 REPAFNEMLDDIAEKFFGVK 305 (321)
Q Consensus 286 rd~~~~~~L~~Ig~~yFgi~ 305 (321)
-||.....+..+|+.|+...
T Consensus 537 l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred cCCCcHHHHHHHHHHHHHcc
Confidence 77777777788888887543
No 16
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.82 E-value=17 Score=35.80 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
.+-+..+-+|-++++ .||++|..+|..+...+ ++.+|+.||=.
T Consensus 311 ~~al~~~e~~lk~~P----~~~~l~l~lgrl~~~~~---~~~~A~~~le~ 353 (398)
T PRK10747 311 EQLEKVLRQQIKQHG----DTPLLWSTLGQLLMKHG---EWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 444666677887765 49999999999999999 99999999853
No 17
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=86.19 E-value=25 Score=34.79 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 141 FLKAAIKWSIEFGAPKTGSP--ELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 141 fl~~ai~WS~~~g~~~~Gdp--~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.++.+=+|-+..+ +|| .++..+|.++++.+ ++.+|+.||=
T Consensus 318 ~~~~~e~~lk~~p----~~~~~~ll~sLg~l~~~~~---~~~~A~~~le 359 (409)
T TIGR00540 318 LEKLIEKQAKNVD----DKPKCCINRALGQLLMKHG---EFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHhCC----CChhHHHHHHHHHHHHHcc---cHHHHHHHHH
Confidence 3444455666543 578 99999999999999 9999999997
No 18
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.09 E-value=2.6 Score=30.15 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLG-NMKDANYIMDE 237 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~-n~~~A~~~~~~ 237 (321)
+++.+...|..++..+ ++.+|..+|-.+- . -.|...+.+..|++. |...+ +...|...++.
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai-------------~-~~p~~~~~~~~~g~~-~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAI-------------E-LDPNNAEAYYNLGLA-YMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHH-------------H-HSTTHHHHHHHHHHH-HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-------------H-cCCCCHHHHHHHHHH-HHHhCccHHHHHHHHHH
Confidence 5788999999999999 9999987664321 1 136777788888887 56777 68888887776
Q ss_pred HHH
Q 020832 238 VKK 240 (321)
Q Consensus 238 f~~ 240 (321)
..+
T Consensus 64 al~ 66 (69)
T PF13414_consen 64 ALK 66 (69)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 19
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.60 E-value=1.3 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 160 PELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
|+.+..+|.++++.+ ++.+|..||-.
T Consensus 1 a~~~~~lg~~~~~~~---~~~~A~~~~~~ 26 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG---NYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 578999999999999 99999999853
No 20
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.55 E-value=53 Score=34.78 Aligned_cols=166 Identities=11% Similarity=0.029 Sum_probs=100.3
Q ss_pred HHHHHHHHhhhhCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHh
Q 020832 37 YKSISARYVAAQRYSEALDLLHA-----------GACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYEL 105 (321)
Q Consensus 37 ~RTl~~Ry~~~~k~~eAi~lL~~-----------ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~ 105 (321)
|-++..-|.+.|++++|.+++-. -...+.++|++..|.++-. -..+.++.+|..+..-++..+..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~----~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY----EMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHh
Confidence 46778889999999999988753 2334557777766665533 34567788888777776666653
Q ss_pred CCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhH
Q 020832 106 FPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFH 185 (321)
Q Consensus 106 ~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (321)
... +.++ .++...+++ .|- ..|......+...|.+.| ++.+|+.-
T Consensus 338 ~g~---------------~~~a-----------~~i~~~m~~----~g~--~~d~~~~~~Li~~y~k~G---~~~~A~~v 382 (697)
T PLN03081 338 LAL---------------LEHA-----------KQAHAGLIR----TGF--PLDIVANTALVDLYSKWG---RMEDARNV 382 (697)
T ss_pred ccc---------------hHHH-----------HHHHHHHHH----hCC--CCCeeehHHHHHHHHHCC---CHHHHHHH
Confidence 221 1111 334444443 221 236677888999999999 99988887
Q ss_pred hhcCCChH--HHHHHHHHHhhccCC--------------ChhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHH
Q 020832 186 FVRGNNPE--KFASTIVNFMGKCYP--------------GEDDLAVARAILMYLS-LGNMKDANYIMDEVKKQ 241 (321)
Q Consensus 186 fl~~~~~~--~~a~~L~ew~~~~~~--------------~e~dlfi~RaVL~~L~-l~n~~~A~~~~~~f~~~ 241 (321)
|---..++ .+..|+.-+...|.. -.+|...--+||.-++ .|.++.|..+|+...+.
T Consensus 383 f~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 75433222 444444333322221 1233344445555444 47888888888877653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=84.83 E-value=62 Score=34.94 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~ 237 (321)
++++++..+|.++...+ ++.+|+..+= .. ..-.|...++.+.++. .++.+++...|..+++.
T Consensus 391 ~n~~l~~~lA~l~~~~g---~~~~A~~~l~---------~a-----l~l~Pd~~~l~~~~a~-~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 391 GNQGLRIDYASVLQARG---WPRAAENELK---------KA-----EVLEPRNINLEVEQAW-TALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHH---------HH-----HhhCCCChHHHHHHHH-HHHHhCCHHHHHHHHHH
Confidence 56889999998888888 7777663221 11 1223666777788877 78999999999999999
Q ss_pred HHHHhh
Q 020832 238 VKKQVE 243 (321)
Q Consensus 238 f~~~~~ 243 (321)
..+..|
T Consensus 453 ll~~~P 458 (765)
T PRK10049 453 VVAREP 458 (765)
T ss_pred HHHhCC
Confidence 887554
No 22
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=39 Score=32.90 Aligned_cols=181 Identities=16% Similarity=0.121 Sum_probs=110.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHhhh--hCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhH
Q 020832 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAA--QRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNEN 95 (321)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~--~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~ 95 (321)
++--...+++.++=+|.|.|+.+...=+.. +--+|--.-+.+-...+...|.+.+-.|+....-+..+.... ...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk---~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK---PKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---hhH
Confidence 444567788999999999999888773221 122332333444556788899999999987776666655432 233
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 020832 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESP 175 (321)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~ 175 (321)
..-|.++|+.||.... ++ +| ..+..+++|+|..... .++=.-+|.-.+...+++.+
T Consensus 84 ~KiirtLiekf~~~~d--sl---~d-----------------qi~v~~~~iewA~rEk-r~fLr~~Le~Kli~l~y~~~- 139 (421)
T COG5159 84 TKIIRTLIEKFPYSSD--SL---ED-----------------QIKVLTALIEWADREK-RKFLRLELECKLIYLLYKTG- 139 (421)
T ss_pred HHHHHHHHHhcCCCCc--cH---HH-----------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-
Confidence 3456688999997753 33 11 1778889999997543 23334456667777888888
Q ss_pred CCChHHHhhHhhcCCChHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832 176 ELDMARVSFHFVRGNNPEKFASTIVNFMGKC-YPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 176 ~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~-~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~ 237 (321)
.|.+|. .....++.|.-+-. .+.-.++.+...- -|=.++|+.-++..+..
T Consensus 140 --~Ysdal---------alIn~ll~ElKk~DDK~~Li~vhllESK-vyh~irnv~KskaSLTa 190 (421)
T COG5159 140 --KYSDAL---------ALINPLLHELKKYDDKINLITVHLLESK-VYHEIRNVSKSKASLTA 190 (421)
T ss_pred --cHHHHH---------HHHHHHHHHHHhhcCccceeehhhhhHH-HHHHHHhhhhhhhHHHH
Confidence 887765 23344555654322 2232232222211 13456677666665544
No 23
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.38 E-value=36 Score=31.88 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=52.0
Q ss_pred hccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHH-HHH
Q 020832 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVR-KIY 103 (321)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~-~l~ 103 (321)
+..++|=||..++-.-+..+.+.+++..|.||..--...+-+.+-. ...+-..-+++++.... .++.++.+++ ..+
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~-~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai 77 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDP-VDEESIARLIELISLFP--PEEPERKKFIKAAI 77 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS---TT-TTHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCC--CCcchHHHHHHHHH
Confidence 3567899999999999999999999999999998777777776543 33334467777777663 3333344433 444
Q ss_pred HhC
Q 020832 104 ELF 106 (321)
Q Consensus 104 ~~~ 106 (321)
+.-
T Consensus 78 ~WS 80 (260)
T PF04190_consen 78 KWS 80 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=83.64 E-value=42 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
++..+..+|..|.+.+ ++.+|..+|-
T Consensus 213 ~~~~~~~la~~~~~~g---~~~~A~~~~~ 238 (389)
T PRK11788 213 CVRASILLGDLALAQG---DYAAAIEALE 238 (389)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 4556677777777777 7777766554
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=81.68 E-value=96 Score=35.16 Aligned_cols=79 Identities=5% Similarity=-0.078 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhc----C--CChHHHHHHHHHHhhccCC--------------ChhHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVR----G--NNPEKFASTIVNFMGKCYP--------------GEDDLAVARA 218 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~----~--~~~~~~a~~L~ew~~~~~~--------------~e~dlfi~Ra 218 (321)
+......+...|.+.+ ++.+|..-|-. + .|...+..++.-+.+.|.. -.+|.+.-..
T Consensus 683 d~~tynsLI~ay~k~G---~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 683 GTVSYSSLMGACSNAK---NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5677888888888888 88888766541 2 2222444443333222211 1223334444
Q ss_pred HHHHHh-cCChhHHHHHHHHHHH
Q 020832 219 ILMYLS-LGNMKDANYIMDEVKK 240 (321)
Q Consensus 219 VL~~L~-l~n~~~A~~~~~~f~~ 240 (321)
++.-++ .++++.|..++....+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444 5788888888776554
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.99 E-value=31 Score=37.88 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHH--Hhh-----------
Q 020832 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVN--FMG----------- 204 (321)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~e--w~~----------- 204 (321)
...|++....|+-.. --++||+..+.-+.+.| ...+|..|-+...||+..++.|-. |.-
T Consensus 330 FaeFL~~r~~~~~~~-----~~~~lH~~Aa~w~~~~g---~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~ 401 (894)
T COG2909 330 FAEFLRQRLQRELAA-----RLKELHRAAAEWFAEHG---LPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLA 401 (894)
T ss_pred HHHHHHhhhccccCC-----chhHHHHHHHHHHHhCC---ChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHH
Confidence 478888888886422 24689999999999999 999999999999999987776654 311
Q ss_pred --ccCC-----ChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHH-HHHhccCChhHHHHH
Q 020832 205 --KCYP-----GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYV-LQTLERDALPLFNML 276 (321)
Q Consensus 205 --~~~~-----~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lL-l~t~e~~~~~~F~~L 276 (321)
+.-| +.+-+.+..+.+. .+...+..|+.++..+...++.+..+....++..|.-+- +.++.++++..+..+
T Consensus 402 ~~~~lP~~~l~~~P~Lvll~aW~~-~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 402 WLKALPAELLASTPRLVLLQAWLL-ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred HHHhCCHHHHhhCchHHHHHHHHH-HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1112 1223333333332 445788899999988887776544333345555554432 355566776666666
Q ss_pred HHHhH
Q 020832 277 RANYK 281 (321)
Q Consensus 277 ~~~Y~ 281 (321)
++.--
T Consensus 481 ar~al 485 (894)
T COG2909 481 ARLAL 485 (894)
T ss_pred HHHHH
Confidence 55433
No 27
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.17 E-value=17 Score=36.86 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCc------------chHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQL------------TCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~------------~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~ 103 (321)
.||.++.-|.++|++.||.-+.-..-..|-..-|. .++-+=+ ..+-+.+....+..+.-+..+-
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA----Kkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA----KKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH----HHHHHhhhccCCccHHHHHHHH
Confidence 46789999999999999988777666555433221 1111111 1222334555554444444444
Q ss_pred HhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHh
Q 020832 104 ELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVS 183 (321)
Q Consensus 104 ~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~ 183 (321)
+++..+.+.. |+ .+++.++++ -+-|.-||..+|.++.... ++.+|.
T Consensus 446 EL~~~Eg~~~------D~-----------------i~LLe~~L~--------~~~D~~LH~~Lgd~~~A~N---e~Q~am 491 (564)
T KOG1174|consen 446 ELCQVEGPTK------DI-----------------IKLLEKHLI--------IFPDVNLHNHLGDIMRAQN---EPQKAM 491 (564)
T ss_pred HHHHhhCccc------hH-----------------HHHHHHHHh--------hccccHHHHHHHHHHHHhh---hHHHHH
Confidence 4444333321 21 677777765 2457789999999999999 999999
Q ss_pred hHhh--cCCChH
Q 020832 184 FHFV--RGNNPE 193 (321)
Q Consensus 184 ~Hfl--~~~~~~ 193 (321)
.||- +.-||+
T Consensus 492 ~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 492 EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhcCcc
Confidence 9986 567766
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=78.82 E-value=70 Score=31.50 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHhhHhh------------------cCCChHHHHHHHHHHhhccCCChhHHHHHHH
Q 020832 157 TGSPELHVMLAEYLYSESPELDMARVSFHFV------------------RGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (321)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl------------------~~~~~~~~a~~L~ew~~~~~~~e~dlfi~Ra 218 (321)
..+|++|..+|..+...| +..+|+..+. ..++++.--+.+-+|.++. |.+.++.++.+
T Consensus 260 ~~~~~~~~~~A~~l~~~g---~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lg 335 (398)
T PRK10747 260 RHQVALQVAMAEHLIECD---DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLG 335 (398)
T ss_pred hCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 368999999999999888 7766655543 2233333344555565443 56666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 020832 219 ILMYLSLGNMKDANYIMDEVKKQ 241 (321)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~ 241 (321)
-+. +..++...|+..|..-.+.
T Consensus 336 rl~-~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 336 QLL-MKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHH-HHCCCHHHHHHHHHHHHhc
Confidence 654 5568888999988776653
No 29
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=78.70 E-value=2.9 Score=35.58 Aligned_cols=32 Identities=16% Similarity=0.460 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 020832 12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (321)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (321)
|.+-..+..+.+.|.+|+||+|...+|.++-+
T Consensus 91 p~~~~~l~~i~~~V~~g~~y~ALk~lR~L~~~ 122 (132)
T PRK00794 91 PDILAGLKAIDELVEAGRYYEALKALRGLYPI 122 (132)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHhhHH
Confidence 34556788889999999999999999999865
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=78.42 E-value=63 Score=30.77 Aligned_cols=27 Identities=15% Similarity=-0.112 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.+...+..+|..+.+.+ ++.+|...+-
T Consensus 139 ~~~~~~~~la~~~~~~g---~~~~A~~~~~ 165 (389)
T PRK11788 139 FAEGALQQLLEIYQQEK---DWQKAIDVAE 165 (389)
T ss_pred chHHHHHHHHHHHHHhc---hHHHHHHHHH
Confidence 35678889999999999 8888876654
No 31
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=64 Score=30.79 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHhc--cCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHH-------------------HHHH-HCCCcc
Q 020832 14 AQENIDKLEKIVN--EGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGA-------------------CLQL-KNNQLT 71 (321)
Q Consensus 14 ~~r~l~rl~~~i~--~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga-------------------~~ll-~~~Q~~ 71 (321)
++.-.+++..-.. .-|||-|--+|=--+.=|..+++|+.|.+-|.+.+ -.|+ +-..+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333444433333 66999999999988888999999999888776555 2333 335577
Q ss_pred hHHHHHHHHHHHHhhCCCCCCh-hHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhh
Q 020832 72 CGAELAVSFVEALVKGKVAYDN-ENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSI 150 (321)
Q Consensus 72 s~~DL~~~lvev~~~~~~~~~~-~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~ 150 (321)
.++||..--++.|.+.|.|=+. ..++|-..+++...|. ++ ..|-.++..--.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd----------------~A-----------lqlYqralavve 141 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPD----------------DA-----------LQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHH----------------HH-----------HHHHHHHHHHHh
Confidence 7888877777888888877664 3557777776643322 11 444444443221
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhcc--CCChhHHHHHHHHHHHHhcCCh
Q 020832 151 EFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKC--YPGEDDLAVARAILMYLSLGNM 228 (321)
Q Consensus 151 ~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~--~~~e~dlfi~RaVL~~L~l~n~ 228 (321)
. ++.-.=.-+|-..+++.|.+-. .|.+|-.-|+ =..-|..++ +++---.|++ +||-||...+.
T Consensus 142 ~-~dr~~ma~el~gk~sr~lVrl~---kf~Eaa~a~l----------Ke~~~~~~~~~y~~~~k~~va-~ilv~L~~~Dy 206 (308)
T KOG1585|consen 142 E-DDRDQMAFELYGKCSRVLVRLE---KFTEAATAFL----------KEGVAADKCDAYNSQCKAYVA-AILVYLYAHDY 206 (308)
T ss_pred c-cchHHHHHHHHHHhhhHhhhhH---HhhHHHHHHH----------HhhhHHHHHhhcccHHHHHHH-HHHHHhhHHHH
Confidence 1 1111111234445555555555 5544443222 223455443 3444444554 67888999999
Q ss_pred hHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHH
Q 020832 229 KDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRA 278 (321)
Q Consensus 229 ~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~ 278 (321)
..|.+++....+ . +.|....--+-+.-||.+-+.++.+.++..+.
T Consensus 207 v~aekc~r~~~q-i----p~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 207 VQAEKCYRDCSQ-I----PAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhcchhc-C----ccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 999998876543 2 23334445788888999999998887777654
No 32
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.11 E-value=60 Score=30.37 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHh--hcCCChHHHHHHHHHHh-hccCCChhHHHHHHHHHHHHhc-CC---hhHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHF--VRGNNPEKFASTIVNFM-GKCYPGEDDLAVARAILMYLSL-GN---MKDA 231 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hf--l~~~~~~~~a~~L~ew~-~~~~~~e~dlfi~RaVL~~L~l-~n---~~~A 231 (321)
+-.|.+++..+-+.|. ++..+..|+ +...++..-+..+..+. ....+++.+ ++..+|+-.+.+ .+ ....
T Consensus 141 ~~~L~~mi~~~~~~e~---~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~ 216 (278)
T PF08631_consen 141 EEILMRMIRSVDHSES---NFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSS 216 (278)
T ss_pred HHHHHHHHHhcccccc---hHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccch
Confidence 3466777777666666 776666665 33444443344444443 455566655 666666555443 22 1222
Q ss_pred --HHHHHHHHHHhhhhccCCCCChhhhHHHHHH
Q 020832 232 --NYIMDEVKKQVENKQLQLQPSDLIQFVFYVL 262 (321)
Q Consensus 232 --~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl 262 (321)
.+.+..|++.+......+.+.+-.+-++-||
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL 249 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLL 249 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 2233445544443333344455556655543
No 33
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=77.55 E-value=3.2 Score=34.99 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 020832 11 LPPAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (321)
Q Consensus 11 ~~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (321)
.|.....+..+...|.+|+||+|...+|.++-+
T Consensus 88 ~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~~~ 120 (126)
T PF07378_consen 88 DPDAREGLDEANELVEAGRYYKALKALRKLIPY 120 (126)
T ss_pred CHHHHHHHHHHHHHHHCCcHHHHHHHHHHhHHH
Confidence 345667888899999999999999999999864
No 34
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=77.26 E-value=2.9 Score=35.51 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 020832 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (321)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (321)
.+...+..+.+.|.+|+||+|...+|.++-+
T Consensus 89 ~~~~~l~~~~~~v~~g~~Y~ALK~~R~Li~~ 119 (131)
T PRK12791 89 SAWPIIEAINNHILNGDLYKALKELRKLIAR 119 (131)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhHHH
Confidence 3556778888999999999999999999875
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=76.36 E-value=1.7 Score=32.74 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
++++.|.++|.++++-+ ++.+|..||-
T Consensus 56 ~~~~~~~l~a~~~~~l~---~y~eAi~~l~ 82 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLG---KYEEAIKALE 82 (84)
T ss_dssp CHHHHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CHHHHHHHHh
Confidence 46799999999999999 9999999873
No 36
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.11 E-value=3.7 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHhhHh
Q 020832 160 PELHVMLAEYLYSESPELDMARVSFHF 186 (321)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (321)
|..|..+|..++..| ++.+|+.|+
T Consensus 1 ~~a~~~la~~~~~~G---~~~eA~~~l 24 (26)
T PF07721_consen 1 PRARLALARALLAQG---DPDEAERLL 24 (26)
T ss_pred CHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 567889999999999 999999875
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=75.29 E-value=21 Score=32.85 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcc
Q 020832 208 PGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIERE 287 (321)
Q Consensus 208 ~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd 287 (321)
+.+..+|+.+|.+. .-.|+.+.|..++...++..|.. .....+.+|+ .++.+.......+.+.|......|
T Consensus 143 ~~~~~~~~~~a~~~-~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~---li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 143 PDSARFWLALAEIY-EQLGDPDKALRDYRKALELDPDD-----PDARNALAWL---LIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp -T-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH---HHHCCChHHHHHHHHHHHHHCcCH
Confidence 35566677777654 57899999999888877754421 1122333443 466776666777777887777677
Q ss_pred hhHHHHHHHHHHHhcCCC
Q 020832 288 PAFNEMLDDIAEKFFGVK 305 (321)
Q Consensus 288 ~~~~~~L~~Ig~~yFgi~ 305 (321)
|.+. +.+|..|+.+.
T Consensus 214 ~~~~---~~la~~~~~lg 228 (280)
T PF13429_consen 214 PDLW---DALAAAYLQLG 228 (280)
T ss_dssp CCHC---HHHHHHHHHHT
T ss_pred HHHH---HHHHHHhcccc
Confidence 6654 44566666553
No 38
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.35 E-value=64 Score=35.32 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHH------HHHHhhhhCHHHHHHHH
Q 020832 14 AQENIDKLEKIVNEGNFYGAQQMYKSI------SARYVAAQRYSEALDLL 57 (321)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl------~~Ry~~~~k~~eAi~lL 57 (321)
+.-.+.+-+..=+.|.|=||.|+|-|+ +.-|-+-|.+++-|.|.
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence 455677778888899999999999886 34555666677766654
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=71.33 E-value=74 Score=28.18 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHh
Q 020832 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALV 85 (321)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~ 85 (321)
..+..+.+-...+..|+|=+|.+.++.+...+.... ...+..+.-+..+.+.|++..|.+...-+++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP---YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 456667777788899999999999998877665432 2334455667788888888888888777666544
No 40
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.17 E-value=26 Score=32.92 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 020832 160 PELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239 (321)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~ 239 (321)
|..|.++|..|+..+ ++.+|..+ |..++-.|-. . +...| .+.+....|..+++...|...|+..+
T Consensus 180 ~~A~y~LG~~y~~~g---~~~~A~~~---------f~~vv~~yP~-s-~~~~d-Al~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 180 PNANYWLGQLNYNKG---KKDDAAYY---------FASVVKNYPK-S-PKAAD-AMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHH---------HHHHHHHCCC-C-cchhH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999999 99999866 3344433311 1 11222 33333444567899999999999998
Q ss_pred HHhhh
Q 020832 240 KQVEN 244 (321)
Q Consensus 240 ~~~~~ 244 (321)
+..|+
T Consensus 245 ~~yP~ 249 (263)
T PRK10803 245 KKYPG 249 (263)
T ss_pred HHCcC
Confidence 87654
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=70.41 E-value=1.4e+02 Score=31.03 Aligned_cols=256 Identities=18% Similarity=0.204 Sum_probs=146.8
Q ss_pred ChhHHHHHHH-HHHhccCChhHHHHHHHHHHHH----------------------HhhhhCHHHHHHHHHHHHHHHHHC-
Q 020832 12 PPAQENIDKL-EKIVNEGNFYGAQQMYKSISAR----------------------YVAAQRYSEALDLLHAGACLQLKN- 67 (321)
Q Consensus 12 ~~~~r~l~rl-~~~i~~G~~YEAhQ~~RTl~~R----------------------y~~~~k~~eAi~lL~~ga~~ll~~- 67 (321)
|.+-+|+..| ......|+|=+|+|.++.-..+ |+.++||.+|+.++...-.++-+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3445555555 4456778888888887766655 577899999999877766665522
Q ss_pred CCc--chHH---HHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhh--hhhhhhhhH
Q 020832 68 NQL--TCGA---ELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAA--KLRVEGCSS 140 (321)
Q Consensus 68 ~Q~--~s~~---DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~--~~~~~~~~~ 140 (321)
|.. ..|+ ||+.++ +...+.+...+..+|.++|++..+...+++ =...+.|-...- ++..+..++
T Consensus 276 G~~h~~va~~l~nLa~ly---~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~------v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLY---YKQGKFAEAEEYCERALEIYEKLLGASHPE------VAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred CCCCHHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHhhccChHH------HHHHHHHHHHHHHHhcchhHHHH
Confidence 222 1222 333333 455555666677788888888744332221 111112221111 344444567
Q ss_pred HHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHH
Q 020832 141 FLKAAIKWSIEFGAPKT-GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAI 219 (321)
Q Consensus 141 fl~~ai~WS~~~g~~~~-Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaV 219 (321)
+..++++=-.+..+... -=+..---+|..|.+.| .|.+|+.-+- ....+.-+- ......+.+.++-+.-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k------~ai~~~~~~-~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG---KYKEAEELYK------KAIQILREL-LGKKDYGVGKPLNQLA 416 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc---chhHHHHHHH------HHHHHHHhc-ccCcChhhhHHHHHHH
Confidence 77777665543311111 12345567888888888 8888884332 112222111 1112345677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHH---
Q 020832 220 LMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDD--- 296 (321)
Q Consensus 220 L~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~--- 296 (321)
.-|.-.++...|-.+|.........-. |++|-+.+ .+++|+..|... .++....++.++
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g---~~~~~~~~--------------~~~nL~~~Y~~~-g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCG---PDHPDVTY--------------TYLNLAALYRAQ-GNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhC---CCCCchHH--------------HHHHHHHHHHHc-ccHHHHHHHHHHHHH
Confidence 888888999999999998887652222 24554444 677888888765 333344444444
Q ss_pred HHHHhcCC
Q 020832 297 IAEKFFGV 304 (321)
Q Consensus 297 Ig~~yFgi 304 (321)
+-+.-+|-
T Consensus 479 ~~~~~~~~ 486 (508)
T KOG1840|consen 479 AREQRLGT 486 (508)
T ss_pred HHHHcCCC
Confidence 44444544
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=69.92 E-value=33 Score=23.58 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
++..+..+|..+...+ ++..|..++..
T Consensus 67 ~~~~~~~~~~~~~~~~---~~~~a~~~~~~ 93 (100)
T cd00189 67 NAKAYYNLGLAYYKLG---KYEEALEAYEK 93 (100)
T ss_pred chhHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 4578889999999888 88888887754
No 43
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.58 E-value=61 Score=35.26 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=85.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-HHHhhCCCCCCh-hH
Q 020832 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFV-EALVKGKVAYDN-EN 95 (321)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lv-ev~~~~~~~~~~-~~ 95 (321)
.+.++=.++-+.||||.-+.+-..-+--+-.=-..+.-+ ..-|+..|++.+|+-++-.|. +...+=...+-. ..
T Consensus 360 ~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~y----I~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 360 EDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTY----IDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred chhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHH----HHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 455666778888999988765433222111000111111 113355566666665554443 111111000000 11
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCC------------C-CCCHHH
Q 020832 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAP------------K-TGSPEL 162 (321)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~------------~-~Gdp~L 162 (321)
.+.+..|.. ++|..|+| |.+. -.|-+..+-.- .-.+.|.+..-.|+...=.. + .-...|
T Consensus 436 ~~~l~~Ia~-~lPt~~~r-L~p~-----vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L 507 (846)
T KOG2066|consen 436 LDQLTDIAP-YLPTGPPR-LKPL-----VYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTAL 507 (846)
T ss_pred ccccchhhc-cCCCCCcc-cCch-----HHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhH
Confidence 233444444 44444444 1111 12222222111 11277777778886542100 0 123367
Q ss_pred HHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHh
Q 020832 163 HVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFM 203 (321)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~ 203 (321)
-..+|..|..++ +|..|.+|++.+.+.+.|--....|.
T Consensus 508 ~e~La~LYl~d~---~Y~~Al~~ylklk~~~vf~lI~k~nL 545 (846)
T KOG2066|consen 508 LEVLAHLYLYDN---KYEKALPIYLKLQDKDVFDLIKKHNL 545 (846)
T ss_pred HHHHHHHHHHcc---ChHHHHHHHHhccChHHHHHHHHHhh
Confidence 888999999999 99999999999999875433333453
No 44
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=59 Score=30.84 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCC-ChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP-GEDDLAVARAILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~-~e~dlfi~RaVL~~L~l~n~~~A~~~~~~ 237 (321)
-|.=|.++|++++.-+ +|..|...| +.+.-+| -+++. .| -+..-.....-++|...|..+|+.
T Consensus 177 ~~nA~yWLGe~~y~qg---~y~~Aa~~f---------~~~~k~~-P~s~KApd---allKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 177 TPNAYYWLGESLYAQG---DYEDAAYIF---------ARVVKDY-PKSPKAPD---ALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred cchhHHHHHHHHHhcc---cchHHHHHH---------HHHHHhC-CCCCCChH---HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4567999999999999 999888554 4444444 22222 23 244555666788999999999999
Q ss_pred HHHHhhhh
Q 020832 238 VKKQVENK 245 (321)
Q Consensus 238 f~~~~~~~ 245 (321)
..++.|..
T Consensus 241 v~k~YP~t 248 (262)
T COG1729 241 VIKRYPGT 248 (262)
T ss_pred HHHHCCCC
Confidence 98877643
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=66.91 E-value=1.7e+02 Score=30.52 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHC-CCcc-h----HHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 020832 30 FYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKN-NQLT-C----GAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (321)
Q Consensus 30 ~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~-~Q~~-s----~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~ 103 (321)
.=|.+-.+--++..+...++|++|+.++..+..++.+. ||.. + -++|+.++ +......-.++.....+++.
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~---~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY---LKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHHH
Confidence 33445566677888888999999999999777777633 4433 2 23343333 12222222234445555555
Q ss_pred HhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHh
Q 020832 104 ELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVS 183 (321)
Q Consensus 104 ~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~ 183 (321)
+........- -..-.+.+-++..--|...+. .++...|+.|.+..|..--|--..-.-+|..|-.-| +|++|+
T Consensus 398 ~~~~~~~~~~---~~~~l~~la~~~~~~k~~~~a-~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g---~~e~a~ 470 (508)
T KOG1840|consen 398 RELLGKKDYG---VGKPLNQLAEAYEELKKYEEA-EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG---NYEAAE 470 (508)
T ss_pred HhcccCcChh---hhHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc---cHHHHH
Confidence 4332211000 011222233332111222222 778899999996667442233345667888888889 998887
Q ss_pred hHhhcCCChHHHHHHHHHHhhc
Q 020832 184 FHFVRGNNPEKFASTIVNFMGK 205 (321)
Q Consensus 184 ~Hfl~~~~~~~~a~~L~ew~~~ 205 (321)
++.+-+..|-++
T Consensus 471 ----------~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 471 ----------ELEEKVLNAREQ 482 (508)
T ss_pred ----------HHHHHHHHHHHH
Confidence 777888888654
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=65.93 E-value=99 Score=32.19 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcC--CChH------HHHHHHHH---H------hh---ccCCChhHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG--NNPE------KFASTIVN---F------MG---KCYPGEDDLAVAR 217 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~--~~~~------~~a~~L~e---w------~~---~~~~~e~dlfi~R 217 (321)
.....|..+|.+++..| ++.+|..+|-.. -+|. .++.++.+ + +. +-.|...+++..|
T Consensus 329 ~~a~a~~~lg~~~~~~g---~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKG---KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45578999999999999 999998888632 2322 22222221 0 11 2346667888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHH
Q 020832 218 AILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDI 297 (321)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~I 297 (321)
+.+ +...|+...|...|+...+..|. ...+++|.... -.+.+ -|..-...|...++.+|........+
T Consensus 406 g~~-~~~~g~~~~A~~~~~kal~l~P~-----~~~~~~~la~~---~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~l 473 (615)
T TIGR00990 406 AQL-HFIKGEFAQAGKDYQKSIDLDPD-----FIFSHIQLGVT---QYKEG---SIASSMATFRRCKKNFPEAPDVYNYY 473 (615)
T ss_pred HHH-HHHcCCHHHHHHHHHHHHHcCcc-----CHHHHHHHHHH---HHHCC---CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 886 46689999999988776653221 01122222111 11122 23334455555555555555556666
Q ss_pred HHHhcCC
Q 020832 298 AEKFFGV 304 (321)
Q Consensus 298 g~~yFgi 304 (321)
|..|...
T Consensus 474 g~~~~~~ 480 (615)
T TIGR00990 474 GELLLDQ 480 (615)
T ss_pred HHHHHHc
Confidence 6666643
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=65.68 E-value=2.2e+02 Score=31.45 Aligned_cols=27 Identities=11% Similarity=-0.109 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHhhHh
Q 020832 157 TGSPELHVMLAEYLYSESPELDMARVSFHF 186 (321)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (321)
.........+|..|...+ ++.+|...|
T Consensus 99 n~~~~~llalA~ly~~~g---dyd~Aiely 125 (822)
T PRK14574 99 NISSRGLASAARAYRNEK---RWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 455555566677888888 777766443
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=62.88 E-value=61 Score=25.83 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~ 237 (321)
.+|..+..+|..+.+.+ ++.+|...|-. ..+..|...+.+..++. .|...++...|...++.
T Consensus 49 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~--------------~~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 49 YNSRYWLGLAACCQMLK---EYEEAIDAYAL--------------AAALDPDDPRPYFHAAE-CLLALGEPESALKALDL 110 (135)
T ss_pred CcHHHHHHHHHHHHHHH---HHHHHHHHHHH--------------HHhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 47899999999999988 88777754421 11223556677777777 45678999999998877
Q ss_pred HHHHh
Q 020832 238 VKKQV 242 (321)
Q Consensus 238 f~~~~ 242 (321)
..+..
T Consensus 111 al~~~ 115 (135)
T TIGR02552 111 AIEIC 115 (135)
T ss_pred HHHhc
Confidence 66644
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=62.36 E-value=78 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.039 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
+++.|..+|.+|+..+ ++.+|..+|-
T Consensus 84 ~~~~~~~la~~~~~~g---~~~~A~~~~~ 109 (135)
T TIGR02552 84 DPRPYFHAAECLLALG---EPESALKALD 109 (135)
T ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 6889999999999999 9999988775
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=61.93 E-value=2.5e+02 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.057 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
++|++|..+|.++...| ++.+|+.+|-.
T Consensus 675 ~~~~a~~nLA~al~~lG---d~~eA~~~l~~ 702 (987)
T PRK09782 675 DDPALIRQLAYVNQRLD---DMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 57778888888888778 77777776653
No 51
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=60.62 E-value=14 Score=22.40 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 161 ELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
+.|..+|.+|...+ ++.+|..+|-.
T Consensus 2 ~~~~~lg~~y~~~~---~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG---DYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 57889999999999 99999998854
No 52
>PLN03077 Protein ECB2; Provisional
Probab=60.45 E-value=2.5e+02 Score=30.46 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLHAG-----------ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE 104 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~~g-----------a~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~ 104 (321)
.+-++..-|.+.+++++|..++-.- ...+.++|+...|.++-..| ...++.+|..+..-++..+.
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M----~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM----RELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCChhHHHHHHHHHH
Confidence 3567777788888888888876421 23345677777666654433 45667777777776666554
Q ss_pred hCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhh
Q 020832 105 LFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSF 184 (321)
Q Consensus 105 ~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~ 184 (321)
.....+ ++ .++...+++ .|- ..|+.....+...|.+.| ++.+|+.
T Consensus 300 ~~g~~~---------------~a-----------~~l~~~~~~----~g~--~~d~~~~n~Li~~y~k~g---~~~~A~~ 344 (857)
T PLN03077 300 LLGDER---------------LG-----------REMHGYVVK----TGF--AVDVSVCNSLIQMYLSLG---SWGEAEK 344 (857)
T ss_pred hcCChH---------------HH-----------HHHHHHHHH----hCC--ccchHHHHHHHHHHHhcC---CHHHHHH
Confidence 322110 00 333333332 221 346777777888888888 7777777
Q ss_pred Hhhc
Q 020832 185 HFVR 188 (321)
Q Consensus 185 Hfl~ 188 (321)
-|=.
T Consensus 345 vf~~ 348 (857)
T PLN03077 345 VFSR 348 (857)
T ss_pred HHhh
Confidence 6643
No 53
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=59.16 E-value=1.1e+02 Score=29.85 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Q 020832 17 NIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (321)
Q Consensus 17 ~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lve 82 (321)
.+.+-...+.+|+|-+|.+.|+-.....-. ..++++.-|..+++.|++..|...+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456677778888888877766654322 124455666677777777777666555544
No 54
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.04 E-value=18 Score=37.75 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=64.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHH-HhhhhCHHHHHHHHHHHHHHHHHCCCcchH-HHHHHHHHHHHh----hCC----
Q 020832 19 DKLEKIVNEGNFYGAQQMYKSISAR-YVAAQRYSEALDLLHAGACLQLKNNQLTCG-AELAVSFVEALV----KGK---- 88 (321)
Q Consensus 19 ~rl~~~i~~G~~YEAhQ~~RTl~~R-y~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~-~DL~~~lvev~~----~~~---- 88 (321)
+.+-..|=+||.+.+.+..+++..= .+. ....|||+.+...- ...+...+ ..+.-+++-.|- ..+
T Consensus 302 e~~~~~i~~~d~~~vL~~~~~~~~~~w~a----ahladLl~~~g~L~-~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~ 376 (566)
T PF07575_consen 302 EQILLAIFEGDIESVLKEISSLFDDWWFA----AHLADLLEHKGLLE-DSEQEDFGGSSLREYLLLEYASSLMSHHSLWQ 376 (566)
T ss_dssp HHHHHHHHTS--GGGHHHHHHH--HHHHH----HHHHHHHHHTTSS---SS-----TS-HHHHHHHHHHHHHHT-TTTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHccchhHH----HHHHHHHHhcCccc-cccccccccccHHHHHHHHHHHHHhcCcchHH
Confidence 3444567789999999999877222 222 23444443322111 11111111 222222221111 110
Q ss_pred ------CCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHH
Q 020832 89 ------VAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPEL 162 (321)
Q Consensus 89 ------~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~L 162 (321)
.-|.++...+|..++..+|-... ++ ..+.+.-|-+|.-.. =..++
T Consensus 377 vai~yL~~c~~~g~~~i~~lL~~~p~~t~-------~~-----------------~~k~l~iC~~~~L~~-----~a~~I 427 (566)
T PF07575_consen 377 VAIGYLSSCPDEGRERIEELLPRVPLDTN-------DD-----------------AEKLLEICAELGLED-----VAREI 427 (566)
T ss_dssp HHHHHHHS-SSS-HHHHHHHGGG----SH-------HH-----------------HHHHHHHHHHHT-HH-----HHHHH
T ss_pred HHHHHHHHCChhhHHHHHHHHhhCCCCch-------HH-----------------HHHHHHHHHHCCCHH-----HHHHH
Confidence 12444557888888887774431 11 145555555544322 13489
Q ss_pred HHHHHHHHHhcCCCCChHHHhhHhhcCCChH---HHHHHHH
Q 020832 163 HVMLAEYLYSESPELDMARVSFHFVRGNNPE---KFASTIV 200 (321)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~---~~a~~L~ 200 (321)
++.+|..++++| +|..|..+|+.+.|.. ..++.++
T Consensus 428 ~~~~~~~~~~~~---~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 428 CKILGQRLLKEG---RYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHH----------------
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999 9999999999999976 4445444
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.99 E-value=61 Score=22.55 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 020832 165 MLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (321)
Q Consensus 165 ~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (321)
..|..+++.| ++.+|+.+| +...+..|...+.....+.+-+ ..|+...|...|+..++.-|
T Consensus 2 ~~a~~~~~~g---~~~~A~~~~--------------~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQG---DYDEAIAAF--------------EQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCT---HHHHHHHHH--------------HHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcC---CHHHHHHHH--------------HHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 3577788888 887777544 2223334666666677776654 88999999999988876543
No 56
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=57.98 E-value=82 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.+..+..+|.++.+.+ ++.+|..++-
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~~A~~~~~ 100 (119)
T TIGR02795 75 APDALLKLGMSLQELG---DKEKAKATLQ 100 (119)
T ss_pred ccHHHHHHHHHHHHhC---ChHHHHHHHH
Confidence 4678999999999999 8888887763
No 57
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=56.97 E-value=1.2e+02 Score=26.04 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHH-----------------hhhhCHHHHHHHHHHHHHHHHHCCCcchHHHH
Q 020832 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARY-----------------VAAQRYSEALDLLHAGACLQLKNNQLTCGAEL 76 (321)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry-----------------~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL 76 (321)
-+..-+.=++.+++|+|=+|-..+..|-+|| .++++|++|+..+. .|++.+=..--+|-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~----rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYD----RFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHH----HHHHhCCCCCCccH
Confidence 4455566788899999999999999998888 44566666666555 34433322233455
Q ss_pred HHHHHH--HHhhC--------CCCCCh----hHHHHHHHHHHhCCCCC
Q 020832 77 AVSFVE--ALVKG--------KVAYDN----ENLDRVRKIYELFPQIP 110 (321)
Q Consensus 77 ~~~lve--v~~~~--------~~~~~~----~~~~rl~~l~~~~p~~~ 110 (321)
+.|+.- -+... +...|. ..+.-+.+++..+|.+.
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 555553 22221 233332 34456677777777553
No 58
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.79 E-value=27 Score=27.36 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCC
Q 020832 54 LDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPV 111 (321)
Q Consensus 54 i~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~ 111 (321)
.+..|.-|..++..|++..|.|..+.+ +.....-=++.....++++|+.+++.+|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~---v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLEL---VRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH---HCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 466777788888888888888775444 4443333356777899999999887764
No 59
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.58 E-value=13 Score=20.51 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 161 ELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
..|..+|.+++..+ ++..|..+|-
T Consensus 2 ~~~~~~a~~~~~~~---~~~~a~~~~~ 25 (34)
T smart00028 2 EALYNLGNAYLKLG---DYDEALEYYE 25 (34)
T ss_pred hHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 46788899999999 9999988774
No 60
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.76 E-value=18 Score=21.48 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLHA 59 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~~ 59 (321)
.|.++..-|.+.+++++|.+++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHH
Confidence 367888888888899888888763
No 61
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.12 E-value=16 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 160 PELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
|+.+..+|..|+..| ++.+|+..|=
T Consensus 1 p~~~~~la~~~~~~G---~~~~A~~~~~ 25 (44)
T PF13428_consen 1 PAAWLALARAYRRLG---QPDEAERLLR 25 (44)
T ss_pred CHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 678899999999999 9999987664
No 62
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=53.82 E-value=12 Score=27.39 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHH
Q 020832 18 IDKLEKIVNEGNFYGAQQMYKSISAR 43 (321)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (321)
+.......++|+|||||..+=-+-.+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~ 28 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKA 28 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHH
Confidence 34455678999999999988777653
No 63
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=53.78 E-value=20 Score=25.23 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=30.8
Q ss_pred hccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Q 020832 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELA 77 (321)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~ 77 (321)
+++|+|=+|.+.|+.+..+... -.++.+.-+..+++.|++..|.++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5677777888888777776543 3445556666777777777766553
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.46 E-value=1.6e+02 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.+++.|..+|..+.+.| ++.+|..|+-
T Consensus 142 ~~~~al~~LA~~~~~~g---~~~~Ai~~~~ 168 (198)
T PRK10370 142 NEVTALMLLASDAFMQA---DYAQAIELWQ 168 (198)
T ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 47889999999999999 9999997775
No 65
>PLN03077 Protein ECB2; Provisional
Probab=53.36 E-value=3.3e+02 Score=29.59 Aligned_cols=113 Identities=14% Similarity=0.056 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLHAG-----------ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE 104 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~~g-----------a~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~ 104 (321)
.|-++..=|.+.+++++|..++..- ...+.++|++..|.++-. -..+.++.+|..++.-++..+.
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~----~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA----LMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH----HHHHhCCCCCceeHHHHHHHHh
Confidence 4566777788888999988876531 223445666655544433 3345566677666665555443
Q ss_pred hCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhh
Q 020832 105 LFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSF 184 (321)
Q Consensus 105 ~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~ 184 (321)
.... ..++ .++...+++ .|- ..+......+-..|.+.| ++.+|+.
T Consensus 401 ~~g~---------------~~~a-----------~~l~~~~~~----~g~--~~~~~~~n~Li~~y~k~g---~~~~A~~ 445 (857)
T PLN03077 401 CLGD---------------LDVG-----------VKLHELAER----KGL--ISYVVVANALIEMYSKCK---CIDKALE 445 (857)
T ss_pred ccch---------------HHHH-----------HHHHHHHHH----hCC--CcchHHHHHHHHHHHHcC---CHHHHHH
Confidence 2110 0111 334444433 221 235556666777777777 7777765
Q ss_pred Hhh
Q 020832 185 HFV 187 (321)
Q Consensus 185 Hfl 187 (321)
=|-
T Consensus 446 vf~ 448 (857)
T PLN03077 446 VFH 448 (857)
T ss_pred HHH
Confidence 543
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=52.11 E-value=3.1e+02 Score=28.97 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLHA-----------GACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRK 101 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~~-----------ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~ 101 (321)
.|-++..-|.+.+++++|.+++.+ -...+.+.|++..|.++-..|+ +.++.++.....-++.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~----~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW----EDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH----HhCCCCChhhHHHHHH
Confidence 344566667777888888777532 2334556777766666644443 3455555544444433
No 67
>PF07579 DUF1548: Domain of Unknown Function (DUF1548); InterPro: IPR013044 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR011436 from INTERPRO.
Probab=49.87 E-value=1.6e+02 Score=25.09 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCC
Q 020832 10 ALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (321)
Q Consensus 10 ~~~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~ 89 (321)
+...+.++|+.+.-+.-++.+=-=|-.|.-+++|+.. .|....+=|-+.+......+..+-=.-+..++++.++..++
T Consensus 23 ~~d~l~~~L~~lTl~~Ts~~~~~~~~~Y~~l~~~F~~--~Y~~S~~~LI~~i~~q~~~sspe~~~~i~~yll~~l~~l~l 100 (135)
T PF07579_consen 23 NTDHLNRNLDGLTLRQTSRLYPQQHEKYDRLFNQFLN--AYRNSGSNLINYILNQILTSSPEQKAAIRNYLLDDLNALNL 100 (135)
T ss_pred cHHHHHhhhhhhhhhhccchhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3456788888888888888877778888888888865 46665555555555555555555666678888988888888
Q ss_pred CCChhHHHHHHHHH
Q 020832 90 AYDNENLDRVRKIY 103 (321)
Q Consensus 90 ~~~~~~~~rl~~l~ 103 (321)
|-+ +..+-+.++|
T Consensus 101 Pe~-~~~~v~~~~F 113 (135)
T PF07579_consen 101 PET-AHSDVMSELF 113 (135)
T ss_pred ChH-HHHHHHHHHH
Confidence 888 7777777776
No 68
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.26 E-value=58 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Q 020832 41 SARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (321)
Q Consensus 41 ~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~ 87 (321)
....+..++|..|++++.+--..+-+.+++.|..+|..-+-+.+..-
T Consensus 134 l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i 180 (291)
T PF10475_consen 134 LQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELI 180 (291)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHH
Confidence 34456788888888888888887778899999999998887777544
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=49.21 E-value=72 Score=21.72 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f 238 (321)
++..+..+|.+++..+ ++.+|..+|-.+-+ .. |..... .......++..++...|...+...
T Consensus 33 ~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~-------------~~-~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 33 NADAYYNLAAAYYKLG---KYEEALEDYEKALE-------------LD-PDNAKA-YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred cHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh-------------CC-CcchhH-HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4588999999999998 88888876543211 11 111122 223334456667777777766554
Q ss_pred H
Q 020832 239 K 239 (321)
Q Consensus 239 ~ 239 (321)
.
T Consensus 95 ~ 95 (100)
T cd00189 95 L 95 (100)
T ss_pred H
Confidence 4
No 70
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.15 E-value=82 Score=29.60 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=44.1
Q ss_pred HHHHHHHHHH-hccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhh
Q 020832 15 QENIDKLEKI-VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVK 86 (321)
Q Consensus 15 ~r~l~rl~~~-i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~ 86 (321)
.......... ++.|+|.+|...++.+..+|-...... +..|--+..++..|++..|......+++.|..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP---NANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3344444444 567999999999999999997653223 23455556666667776666665555554443
No 71
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.00 E-value=1.5e+02 Score=24.41 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
-.|..+.+.|.+|...| ++.+|+.+|-
T Consensus 116 ~~~~~~~~~Gdi~~~~g---~~~~A~~~y~ 142 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQG---DYDEARAAYQ 142 (145)
T ss_pred hHHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 46789999999999999 9999998763
No 72
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=48.77 E-value=3.6e+02 Score=28.64 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH
Q 020832 16 ENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFV 81 (321)
Q Consensus 16 r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lv 81 (321)
-++.=+.+...+|++=+|..+++.+....... .+.++.-+..++..|++..|.+...-++
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~------~~~l~~l~~~~l~~g~~~~A~~~l~~~l 103 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG------RDLLRRWVISPLASSQPDAVLQVVNKLL 103 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc------hhHHHHHhhhHhhcCCHHHHHHHHHHHH
Confidence 34444567777888888888877776554332 2223333344455666666555544333
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=48.63 E-value=25 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
..+++.++.=. -++++....+|.+|.+.| ++.+|+..|-.
T Consensus 11 ~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g---~~~~A~~~l~~ 50 (68)
T PF14559_consen 11 IELLEKALQRN-------PDNPEARLLLAQCYLKQG---QYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT----HHHHHHHHHC
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45555554322 248999999999999999 99999988864
No 74
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=48.61 E-value=30 Score=21.01 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 160 PELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
|+.+..+|.+|..-+ ++.+|..+|-
T Consensus 1 a~~~~~~g~~~~~~~---~~~~A~~~~~ 25 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG---DYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CchHHHHHHH
Confidence 467888999999999 9999998874
No 75
>PF12854 PPR_1: PPR repeat
Probab=48.27 E-value=30 Score=21.81 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLH 58 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~ 58 (321)
+|-|++.=|-+.|+.++|++++-
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 68899999999999999999875
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=47.36 E-value=36 Score=24.23 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHh
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF 186 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (321)
.+.+++++++.. .+|.++...|.++++.| ++.+|...|
T Consensus 15 ~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g---~~~~A~~~l 52 (73)
T PF13371_consen 15 LEVLERALELDP-------DDPELWLQRARCLFQLG---RYEEALEDL 52 (73)
T ss_pred HHHHHHHHHhCc-------ccchhhHHHHHHHHHhc---cHHHHHHHH
Confidence 677888888753 38899999999999999 999888554
No 77
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.63 E-value=1.2e+02 Score=28.78 Aligned_cols=86 Identities=12% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHhccCChhHHHHHHHHHHHHH-----------------hhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHH
Q 020832 21 LEKIVNEGNFYGAQQMYKSISARY-----------------VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEA 83 (321)
Q Consensus 21 l~~~i~~G~~YEAhQ~~RTl~~Ry-----------------~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev 83 (321)
--..+.+|+|=+|-|-++..+.+| .++|+|++|..+.-.+++ ++.+..-+.|-.+-+-.+
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKlg~~ 224 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHHHHH
Confidence 345789999999999999999999 456788888877776666 556666666766666665
Q ss_pred HhhCCCCCChhHHHHHHHHHHhCCCCCC
Q 020832 84 LVKGKVAYDNENLDRVRKIYELFPQIPV 111 (321)
Q Consensus 84 ~~~~~~~~~~~~~~rl~~l~~~~p~~~~ 111 (321)
+...+ =+++...-+-++++.+|.++.
T Consensus 225 ~~~l~--~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 225 LGRLG--NTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHhc--CHHHHHHHHHHHHHHCCCCHH
Confidence 54443 134566778899999997653
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=46.14 E-value=1.4e+02 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
.||.++..+|..|..-| ++.+|..+|-
T Consensus 212 ~~~~~~~~la~~~~~lg---~~~~Al~~~~ 238 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLG---RYEEALEYLE 238 (280)
T ss_dssp TSCCHCHHHHHHHHHHT----HHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccc---cccccccccc
Confidence 47788888899998888 8888887775
No 79
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.88 E-value=2.4e+02 Score=28.67 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhccCChhH------HHHHH-------HHHHHHHhhhhCHHH-HHHHHHHHHHHH---HHCCCcchHHHH
Q 020832 14 AQENIDKLEKIVNEGNFYG------AQQMY-------KSISARYVAAQRYSE-ALDLLHAGACLQ---LKNNQLTCGAEL 76 (321)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YE------AhQ~~-------RTl~~Ry~~~~k~~e-Ai~lL~~ga~~l---l~~~Q~~s~~DL 76 (321)
+.-+.=+++..+-.|+|-+ +.++. +....||..++.|.| |+.+..+--..| ++-|....|.++
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHH
Confidence 4445667889999999999 46766 777788877766555 777766544333 233443333322
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCC
Q 020832 77 AVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPK 156 (321)
Q Consensus 77 ~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~ 156 (321)
+...-+++.-.+|.++-=.- .+.+-.+|+.. .+..|=...+-.+.
T Consensus 341 ----------a~~~~~~~~W~~Lg~~AL~~------------g~~~lAe~c~~-------k~~d~~~L~lLy~~------ 385 (443)
T PF04053_consen 341 ----------AKELDDPEKWKQLGDEALRQ------------GNIELAEECYQ-------KAKDFSGLLLLYSS------ 385 (443)
T ss_dssp ----------CCCCSTHHHHHHHHHHHHHT------------TBHHHHHHHHH-------HCT-HHHHHHHHHH------
T ss_pred ----------HHhcCcHHHHHHHHHHHHHc------------CCHHHHHHHHH-------hhcCccccHHHHHH------
Confidence 21111233334444332110 00000111111 11223233333332
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHH
Q 020832 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNF 202 (321)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew 202 (321)
.||.+-=..+|..--+.+ ++..|-..+++.+|.+.+.+.|.+-
T Consensus 386 ~g~~~~L~kl~~~a~~~~---~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERG---DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 577776677777777778 8888888888888888888888754
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=45.80 E-value=2.5e+02 Score=29.25 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhh----------------------cCCChHHHHHHHHHHhhccCCChhHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFV----------------------RGNNPEKFASTIVNFMGKCYPGEDDLAVA 216 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl----------------------~~~~~~~~a~~L~ew~~~~~~~e~dlfi~ 216 (321)
+.++...-+.++.+.| ++.+|..|+- +|...+ |.-.+.=.-+-+|...+.|-.
T Consensus 3 ~SE~lLY~~~il~e~g---~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~e--A~~~y~~Li~rNPdn~~Yy~~ 77 (517)
T PF12569_consen 3 HSELLLYKNSILEEAG---DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEE--AEKIYRELIDRNPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHHHHCC---CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHCCCcHHHHHH
Q ss_pred HHHHH----HHhcCChhHHHHHHHHHHHHhhhhccC--CCCChhhhHHH----------HHHHHhccCChhHHHHHHHHh
Q 020832 217 RAILM----YLSLGNMKDANYIMDEVKKQVENKQLQ--LQPSDLIQFVF----------YVLQTLERDALPLFNMLRANY 280 (321)
Q Consensus 217 RaVL~----~L~l~n~~~A~~~~~~f~~~~~~~~~~--~~~~PlLnF~~----------lLl~t~e~~~~~~F~~L~~~Y 280 (321)
-.... -+.-.++..-..+++.+.+..|....+ .| |+|+. +|...+.++-+++|..|+.-|
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~----L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly 153 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP----LDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY 153 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh----cccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q ss_pred HHhhhcchhHHHHHHHHHHHhcC
Q 020832 281 KASIEREPAFNEMLDDIAEKFFG 303 (321)
Q Consensus 281 ~~~l~rd~~~~~~L~~Ig~~yFg 303 (321)
. ||.=...+..|...|..
T Consensus 154 ~-----d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 154 K-----DPEKAAIIESLVEEYVN 171 (517)
T ss_pred c-----ChhHHHHHHHHHHHHHH
No 81
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=44.76 E-value=1.8e+02 Score=24.15 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHH
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~Ra 218 (321)
...+++|+.+. |+-+...|..+...| ++.+|..+|-. .-...|...+.+..++
T Consensus 13 ~~~~~~al~~~----------p~~~~~~g~~~~~~g---~~~~A~~~~~~--------------al~~~P~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSVD----------PETVYASGYASWQEG---DYSRAVIDFSW--------------LVMAQPWSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHcC----------HHHHHHHHHHHHHcC---CHHHHHHHHHH--------------HHHcCCCcHHHHHHHH
Confidence 45566676543 444666799999999 99988766543 2233455666677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHH
Q 020832 219 ILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIA 298 (321)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig 298 (321)
.+. ...|+...|...|+.-.+.-| . ...++.|... .+.... -+..-.+.|...++.+|....+.+-.|
T Consensus 66 ~~~-~~~g~~~~A~~~y~~Al~l~p----~-~~~a~~~lg~-~l~~~g-----~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 66 GTW-MMLKEYTTAINFYGHALMLDA----S-HPEPVYQTGV-CLKMMG-----EPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHH-HHHhhHHHHHHHHHHHHhcCC----C-CcHHHHHHHH-HHHHcC-----CHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 654 457888888888776664221 1 1123233322 222222 233355667777776666555554443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.18 E-value=4.4e+02 Score=28.12 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=51.8
Q ss_pred HhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHH-h-hccCCChhHHHHHHHHHHH--H
Q 020832 148 WSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNF-M-GKCYPGEDDLAVARAILMY--L 223 (321)
Q Consensus 148 WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew-~-~~~~~~e~dlfi~RaVL~~--L 223 (321)
|-..+...+-++-++-.--|-.+.+.+ +|.+|+.-+.-+.+ .|-+-|.+= . +++ .|.++-..|.-|-| .
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~g---ky~qA~elL~kA~~--~~~e~l~~~d~~eEe--ie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENG---KYNQAIELLEKALR--ICREKLEDEDTNEEE--IEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH--HHHHhhcccccchhh--HHHHHHHHHHHHHHHHH
Confidence 555566666788899999999999999 99999876654411 000111100 0 112 23344444444444 4
Q ss_pred hcCChhHHHHHHHHHHHH
Q 020832 224 SLGNMKDANYIMDEVKKQ 241 (321)
Q Consensus 224 ~l~n~~~A~~~~~~f~~~ 241 (321)
..|....|...+..+.+.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HhcchHHHHHHHHHHHHh
Confidence 468888888877766654
No 83
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=42.84 E-value=70 Score=22.22 Aligned_cols=55 Identities=5% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Q 020832 22 EKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (321)
Q Consensus 22 ~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lve 82 (321)
...++.|+|=+|...|+.+..+. .+..+..+.-+..+.+.|++..|.......++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788888888887777665 33566666667777778887777765444443
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=40.72 E-value=2.2e+02 Score=23.92 Aligned_cols=121 Identities=14% Similarity=0.030 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f 238 (321)
....+..+|..+...+ ++.+|..+|-.+-... ..+.+........-+.|...++...|...+...
T Consensus 34 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~------------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 34 EAFTYYRDGMSAQSEG---EYAEALQNYYEAMRLE------------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcc------------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888899999889 9999888766432110 001111111222234556679999999987776
Q ss_pred HHHhhhhccCCCCChhhhHHHHHHHHh----ccCC----hhHHHHHHHHhHHhhhcch----hHHHHHHHHHH
Q 020832 239 KKQVENKQLQLQPSDLIQFVFYVLQTL----ERDA----LPLFNMLRANYKASIEREP----AFNEMLDDIAE 299 (321)
Q Consensus 239 ~~~~~~~~~~~~~~PlLnF~~lLl~t~----e~~~----~~~F~~L~~~Y~~~l~rd~----~~~~~L~~Ig~ 299 (321)
.+..+. ....+.|...+....- +.+. ...|..-...|+..+..|| ....++..||+
T Consensus 99 l~~~~~-----~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 99 LERNPF-----LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHhCcC-----cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 653221 1122333333332121 2333 2356666678888888886 55566666664
No 85
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.46 E-value=96 Score=32.31 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCC---CCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHH
Q 020832 142 LKAAIKWSIEFGAPK---TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (321)
Q Consensus 142 l~~ai~WS~~~g~~~---~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~Ra 218 (321)
|..+..|+..+..+. +-.|.+|-++|.+...-+ -|+.|+.||+-+..--.--++ .-+.-+-.
T Consensus 346 i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~---~~enAe~hf~~a~k~t~~~dl------------~a~~nlnl 410 (629)
T KOG2300|consen 346 IVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN---CYENAEFHFIEATKLTESIDL------------QAFCNLNL 410 (629)
T ss_pred HHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc---hHHHHHHHHHHHHHhhhHHHH------------HHHHHHhH
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 020832 219 ILMYLSLGNMKDANYIMDE 237 (321)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~ 237 (321)
.+-||-.++-.+=.++++.
T Consensus 411 Ai~YL~~~~~ed~y~~ld~ 429 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDL 429 (629)
T ss_pred HHHHHHhccHHHHHHHHHh
No 86
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=5.5e+02 Score=28.22 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=91.2
Q ss_pred HHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHh--CCCCCCCCCCC
Q 020832 39 SISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYEL--FPQIPVPHNLE 116 (321)
Q Consensus 39 Tl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~--~p~~~~~r~l~ 116 (321)
.+..|++..+.|..||.+.. +-+.....|+=.-......+-+...+.|++.+++|.+=++. +|...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~------~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS------ 509 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAK------LLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS------ 509 (829)
T ss_pred hhhHHHHhcchhHHHHHHHH------HhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee------
Confidence 35799999999999998764 22333333422233444555566677788888888877775 32111
Q ss_pred CCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHH----------HHHhcCCCCChHHHhhHh
Q 020832 117 DDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAE----------YLYSESPELDMARVSFHF 186 (321)
Q Consensus 117 ~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~----------~~~~e~~~~~~~~A~~Hf 186 (321)
+...-++| +--|-++|-..|.+ .+++-+ ++..|..--
T Consensus 510 ---------------------y~~iA~~A---------y~~GR~~LA~kLle~E~~~~~qV~lLL~m~---~~~~AL~ka 556 (829)
T KOG2280|consen 510 ---------------------YAAIARRA---------YQEGRFELARKLLELEPRSGEQVPLLLKMK---DSSLALKKA 556 (829)
T ss_pred ---------------------HHHHHHHH---------HhcCcHHHHHHHHhcCCCccchhHHHhccc---hHHHHHHHH
Confidence 12222222 22467776655544 244455 777788888
Q ss_pred hcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 020832 187 VRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQV 242 (321)
Q Consensus 187 l~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~ 242 (321)
+-+.|++....+|..-..+ .+|+-|- ..+.+..+|..+|..|+++-
T Consensus 557 ies~d~~Li~~Vllhlk~~---------~~~s~l~-~~l~~~p~a~~lY~~~~r~~ 602 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNK---------LNRSSLF-MTLRNQPLALSLYRQFMRHQ 602 (829)
T ss_pred HhcCCchhHHHHHHHHHHH---------HHHHHHH-HHHHhchhhhHHHHHHHHhh
Confidence 8888888666666664333 2233222 45677889999999999743
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.07 E-value=4e+02 Score=26.39 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=22.6
Q ss_pred HhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHH
Q 020832 24 IVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHA 59 (321)
Q Consensus 24 ~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ 59 (321)
.|.||+| -++..|+++-++|++||++|.+
T Consensus 7 ~i~EGef-------taviy~lI~d~ry~DaI~~l~s 35 (459)
T KOG4340|consen 7 QIPEGEF-------TAVVYRLIRDARYADAIQLLGS 35 (459)
T ss_pred cCCCCch-------HHHHHHHHHHhhHHHHHHHHHH
Confidence 3567765 3567788999999999999974
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=38.89 E-value=2.7e+02 Score=24.50 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCC
Q 020832 15 QENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (321)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~ 88 (321)
+..-..-...++.|+|-+|-+.+..+..||..+.--.+| .+.-+....+.|++..+.....-+++.+..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A---~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQA---QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHH---HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 344556678899999999999999999999876554444 34445567777777777777777776666553
No 89
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=38.85 E-value=6.3e+02 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
+++++|..+|.+++..+ ++.+|..+|-.
T Consensus 179 ~~~~~~~~LA~ll~~~g---~~~eAl~~l~~ 206 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSG---RRDEGFAVLEQ 206 (1157)
T ss_pred CCHHHHHHHHHHHHccC---CHHHHHHHHHH
Confidence 58899999999999999 99999988863
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=38.70 E-value=3.9e+02 Score=26.23 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhH-HHHHHHHHHHHhcCChhHHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDD-LAVARAILMYLSLGNMKDANYIMD 236 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~d-lfi~RaVL~~L~l~n~~~A~~~~~ 236 (321)
.+|+++..+|..+...| ++..|...+ -+..++.+..+.. +...+.+.. +..++...+.+.++
T Consensus 261 ~~~~l~~~~a~~l~~~g---~~~~A~~~l-------------~~~l~~~pd~~~~~~~~l~~~~~-l~~~~~~~~~~~~e 323 (409)
T TIGR00540 261 HNIALKIALAEHLIDCD---DHDSAQEII-------------FDGLKKLGDDRAISLPLCLPIPR-LKPEDNEKLEKLIE 323 (409)
T ss_pred CCHHHHHHHHHHHHHCC---ChHHHHHHH-------------HHHHhhCCCcccchhHHHHHhhh-cCCCChHHHHHHHH
Confidence 58999999999999999 877777433 2222222222211 112222221 22355555655555
Q ss_pred HHHHHhhhhccCCCCCh----hhhHHHHHHHHhccCChhHHHHHHHHhH--HhhhcchhHHHHHHHHHHHhcCCC
Q 020832 237 EVKKQVENKQLQLQPSD----LIQFVFYVLQTLERDALPLFNMLRANYK--ASIEREPAFNEMLDDIAEKFFGVK 305 (321)
Q Consensus 237 ~f~~~~~~~~~~~~~~P----lLnF~~lLl~t~e~~~~~~F~~L~~~Y~--~~l~rd~~~~~~L~~Ig~~yFgi~ 305 (321)
...+..| ..| +....|+++. . ..|..-++.++ ..++.+|.-..+. ..|+.+.-..
T Consensus 324 ~~lk~~p-------~~~~~~ll~sLg~l~~~---~---~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g 384 (409)
T TIGR00540 324 KQAKNVD-------DKPKCCINRALGQLLMK---H---GEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAG 384 (409)
T ss_pred HHHHhCC-------CChhHHHHHHHHHHHHH---c---ccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcC
Confidence 5554332 233 2344444432 1 23444555566 4555555554444 6677666544
No 91
>PRK12370 invasion protein regulator; Provisional
Probab=38.68 E-value=4.6e+02 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFH 185 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (321)
++|..|..+|.+|...| ++.+|+.+
T Consensus 439 ~~~~~~~~la~~l~~~G---~~~eA~~~ 463 (553)
T PRK12370 439 DNPILLSMQVMFLSLKG---KHELARKL 463 (553)
T ss_pred cCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 45556666666665556 66666554
No 92
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=38.61 E-value=70 Score=19.76 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhCHHHHHHHHHHHHHHH
Q 020832 37 YKSISARYVAAQRYSEALDLLHAGACLQ 64 (321)
Q Consensus 37 ~RTl~~Ry~~~~k~~eAi~lL~~ga~~l 64 (321)
+-.+..-|..+++|++|.+++.+.....
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4456667777778888887777665443
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=38.37 E-value=1.3e+02 Score=22.84 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Q 020832 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (321)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lve 82 (321)
...-....+.|+|-+|...+..+..++... ....+..+.-+..+.+.|++..+.++...++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344456677888888888888877654321 11234455566677777777776666555444
No 94
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=37.45 E-value=65 Score=27.44 Aligned_cols=59 Identities=25% Similarity=0.270 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhC
Q 020832 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELF 106 (321)
Q Consensus 33 AhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~ 106 (321)
|.|.|+.. -+......+-+.+||+|+..+++.- ...++..+++--.+.+.|..+||..+
T Consensus 6 ~~~aY~qn---~V~taSP~~Li~MLyeg~l~~l~~A------------~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 6 AYQAYQQN---QVNTASPHKLILMLYEGALKFLKRA------------KEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHH------------HHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 55666666 6777889999999999999988641 22345555665556777777777643
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=36.86 E-value=3e+02 Score=24.34 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCC--hhHHHHHH
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGN--MKDANYIM 235 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n--~~~A~~~~ 235 (321)
.|++.+..+|.+|...+ ++..|..+|- .. -+-.|...+++..-|..-|...++ ...|..++
T Consensus 71 ~~~~~w~~Lg~~~~~~g---~~~~A~~a~~---------~A-----l~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 71 QNSEQWALLGEYYLWRN---DYDNALLAYR---------QA-----LQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHH---------HH-----HHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 58899999999999999 9999886662 11 122356777788878766666666 48888888
Q ss_pred HHHHHHhh
Q 020832 236 DEVKKQVE 243 (321)
Q Consensus 236 ~~f~~~~~ 243 (321)
+...+..+
T Consensus 134 ~~al~~dP 141 (198)
T PRK10370 134 DKALALDA 141 (198)
T ss_pred HHHHHhCC
Confidence 88776543
No 96
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.61 E-value=5.2e+02 Score=27.01 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhhhCHHH-HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHH
Q 020832 45 VAAQRYSE-ALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHE 123 (321)
Q Consensus 45 ~~~~k~~e-Ai~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~ 123 (321)
+++.+|.+ |+||=..-|..|+++|.+.-++++ +.|+++..-++-......|..|.=+-.
T Consensus 409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei----lkv~~~kdnk~~saaa~nl~~l~flqg---------------- 468 (840)
T KOG2003|consen 409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEI----LKVFEKKDNKTASAAANNLCALRFLQG---------------- 468 (840)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH----HHHHHhccchhhHHHhhhhHHHHHHhc----------------
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc-CCChHHHHHHHHHH
Q 020832 124 LTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR-GNNPEKFASTIVNF 202 (321)
Q Consensus 124 ~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~-~~~~~~~a~~L~ew 202 (321)
.+=+..|-.+.--.-..-+=+|.-..-=|+.-+..| ++.+|...+-- -++...|.+.|+..
T Consensus 469 ---------------gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng---d~dka~~~ykeal~ndasc~ealfni 530 (840)
T KOG2003|consen 469 ---------------GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG---DLDKAAEFYKEALNNDASCTEALFNI 530 (840)
T ss_pred ---------------ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC---cHHHHHHHHHHHHcCchHHHHHHHHh
Q ss_pred hhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHH-HHhccCChhHHHHHHHHhH
Q 020832 203 MGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVL-QTLERDALPLFNMLRANYK 281 (321)
Q Consensus 203 ~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl-~t~e~~~~~~F~~L~~~Y~ 281 (321)
-|-+=.++|+..|-.+|-.....+ +|=++.|+ ++--....+--..-.+.|-
T Consensus 531 ----------------glt~e~~~~ldeald~f~klh~il------------~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 531 ----------------GLTAEALGNLDEALDCFLKLHAIL------------LNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred ----------------cccHHHhcCHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHhhCHHHHHHHHH
Q ss_pred HhhhcchhHHHHHHHHHHHh
Q 020832 282 ASIEREPAFNEMLDDIAEKF 301 (321)
Q Consensus 282 ~~l~rd~~~~~~L~~Ig~~y 301 (321)
..-.--|.=...|.++|.+|
T Consensus 583 q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HhcccCCCCHHHHHHHHHHh
No 97
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=36.08 E-value=1.4e+02 Score=23.90 Aligned_cols=87 Identities=8% Similarity=-0.051 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHhcc-----CChhHHHHHHHHhHHhhhcc
Q 020832 213 LAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTLER-----DALPLFNMLRANYKASIERE 287 (321)
Q Consensus 213 lfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~e~-----~~~~~F~~L~~~Y~~~l~rd 287 (321)
.-+.|....-+.......+..+|..+.+..|.....|+ ..++... .+.. .....|.......-..++..
T Consensus 5 ~~~l~~sw~~~~~~~~~~g~~~f~~lf~~~P~~~~~F~---~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~v~~l~~~ 78 (140)
T cd01040 5 KKLVKASWAKLKADREEIGLEFYERLFKAHPETRALFS---RFGGLSA---ALKGSPKFKAHGKRVLNALDEAIKNLDDL 78 (140)
T ss_pred HHHHHHHHHHHHccHHhHHHHHHHHHHHHChhHHHHhH---HhCCchH---hHccCHHHHHHHHHHHHHHHHHHHhccCh
Confidence 34555555655555666777777777776665433222 1111111 0000 00122222223333344455
Q ss_pred hhHHHHHHHHHHHhcCCC
Q 020832 288 PAFNEMLDDIAEKFFGVK 305 (321)
Q Consensus 288 ~~~~~~L~~Ig~~yFgi~ 305 (321)
+.+...+.++|..+-...
T Consensus 79 ~~l~~~l~~lg~~H~~~~ 96 (140)
T cd01040 79 EALKALLAKLGRKHAKRG 96 (140)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 566777777777766544
No 98
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=36.05 E-value=79 Score=25.45 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHhhhh---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCC
Q 020832 41 SARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (321)
Q Consensus 41 ~~Ry~~~~---k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~ 89 (321)
+.|-..+| +|.||+.|+..-.....+.|. +.+||...--.++....+
T Consensus 17 A~~R~~rGlkLN~pEAvAlIs~~v~E~aRdG~--svaelm~~g~~~L~~d~V 66 (96)
T cd00390 17 ARKRLARGLKLNYPEAVALIADEILEGARDGK--SVAELMSLGKTVLTRDDV 66 (96)
T ss_pred HHHHHHcCcccCcHHHHHHHHHHHHHHhhcCC--CHHHHHHHHhhhCCHHhc
Confidence 33444444 899999999999999988887 888888777777766544
No 99
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=34.87 E-value=31 Score=29.39 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 020832 14 AQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (321)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (321)
+-.-+.++...+-+|.+|||.-.+|.+|-+
T Consensus 94 il~~lk~Id~lV~~~~~feALkaiR~lyp~ 123 (148)
T COG5443 94 ILAALKRIDGLVMAGRAFEALKAIRGLYPI 123 (148)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhchh
Confidence 344567788899999999999999998865
No 100
>PF14003 YlbE: YlbE-like protein
Probab=34.85 E-value=49 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=30.7
Q ss_pred HhhhcchhHHHHHHHHHHHhcCCCC-------CCC--chHhHHHhhhcC
Q 020832 282 ASIEREPAFNEMLDDIAEKFFGVKR-------RNP--MQGIFGDIFKMM 321 (321)
Q Consensus 282 ~~l~rd~~~~~~L~~Ig~~yFgi~~-------~~~--l~~m~~~lf~m~ 321 (321)
..|.|+|.-.+.++.-+..||+..- +|+ +..||-.||++|
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~~~m 64 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMFQAM 64 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3578999999999999999999863 243 567777777654
No 101
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=34.14 E-value=51 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHh
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVS 183 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~ 183 (321)
.+++.+..+|..|...| ++.+|+
T Consensus 11 ~n~~a~~nla~~~~~~g---~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQG---DYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCc---CHHhhc
Confidence 48899999999999999 999886
No 102
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=33.65 E-value=64 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhCHHHHHHHHH
Q 020832 33 AQQMYKSISARYVAAQRYSEALDLLH 58 (321)
Q Consensus 33 AhQ~~RTl~~Ry~~~~k~~eAi~lL~ 58 (321)
|..+|..-+++++.+++|.||..+.-
T Consensus 5 ad~l~~~~F~~l~~~g~y~eAA~~AA 30 (66)
T PF13838_consen 5 ADDLYVQQFNELFSQGQYEEAAKVAA 30 (66)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567777777777777777766654
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.52 E-value=4.4e+02 Score=25.30 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCC
Q 020832 34 QQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPH 113 (321)
Q Consensus 34 hQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r 113 (321)
+-+-|--+.|+=+.++|++|++.+- .+++-+..+-++ =.-=|-++...|-.. +.+.-|++.+..|+.+.
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~----~lL~ddpt~~v~--~KRKlAilka~GK~l--~aIk~ln~YL~~F~~D~--- 154 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYE----SLLEDDPTDTVI--RKRKLAILKAQGKNL--EAIKELNEYLDKFMNDQ--- 154 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHH----HHhccCcchhHH--HHHHHHHHHHcCCcH--HHHHHHHHHHHHhcCcH---
Q ss_pred CCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHh
Q 020832 114 NLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF 186 (321)
Q Consensus 114 ~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (321)
+-|..++|--.. ...|-++|.=.-.=.-..|+ .|..|..+|.+++..|+..++..|+.|+
T Consensus 155 -----EAW~eLaeiY~~-------~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 155 -----EAWHELAEIYLS-------EGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred -----HHHHHHHHHHHh-------HhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 104
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=33.47 E-value=66 Score=18.88 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhh
Q 020832 221 MYLSLGNMKDANYIMDEVKKQVEN 244 (321)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~~ 244 (321)
.|.-.|+...|...|+.+++.+|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344589999999999999998764
No 105
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.40 E-value=4.1e+02 Score=25.82 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhh
Q 020832 56 LLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRV 135 (321)
Q Consensus 56 lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~ 135 (321)
+.|.-+..++-+|+++-..|+..-+++ ..-|.++.-+..|..+-=-+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~L~s~Lgr~~MQ~GD~-------------------------- 228 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQLLSGLGRISMQIGDI-------------------------- 228 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHHHHHHHHHHHHhcccH--------------------------
Confidence 456677788899999999888777666 22344444445554443222211
Q ss_pred hhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHh--hcCCChHHHHHHHHHHhhccCCChhHH
Q 020832 136 EGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF--VRGNNPEKFASTIVNFMGKCYPGEDDL 213 (321)
Q Consensus 136 ~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf--l~~~~~~~~a~~L~ew~~~~~~~e~dl 213 (321)
+++++...+.-|=..+..+ --|.--.|..-+.+|.-.+ ++..|.+-+ +.-.|++ . ..
T Consensus 229 k~a~~yf~~vek~~~kL~~-~q~~~~V~~n~a~i~lg~n---n~a~a~r~~~~i~~~D~~----------------~-~~ 287 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDG-LQGKIMVLMNSAFLHLGQN---NFAEAHRFFTEILRMDPR----------------N-AV 287 (366)
T ss_pred HHHHHHHHHHHHHHhhhhc-cchhHHHHhhhhhheeccc---chHHHHHHHhhccccCCC----------------c-hh
Confidence 1124444443332332221 2455667777777777777 776666555 4444433 1 13
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 020832 214 AVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (321)
Q Consensus 214 fi~RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (321)
++---.|..|.+|++.+|.+.+.....+.|
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 455556788999999999998887776554
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=32.30 E-value=1.8e+02 Score=20.42 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 020832 207 YPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (321)
Q Consensus 207 ~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (321)
.|....++..+|.+ +...|+...|...++.+.+.-|
T Consensus 25 ~p~~~~~~~~~a~~-~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 25 DPDDPELWLQRARC-LFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CcccchhhHHHHHH-HHHhccHHHHHHHHHHHHHHCC
Confidence 45666666667655 4778999999999999887544
No 107
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=31.61 E-value=64 Score=18.62 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLH 58 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~ 58 (321)
+|.++.+=|.+.+++++|.+++.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFD 24 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHH
Confidence 36677888888888888888775
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=31.58 E-value=4.3e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 020832 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (321)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f 238 (321)
++..|..+|.+|+..+ ++.+|..++-..-+. |- .........++..+. .++..|+...|...++..
T Consensus 147 ~~~~~~~la~i~~~~g---~~~eA~~~l~~~l~~---------~~-~~~~~~~~~~~~la~-~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 147 DAWAVHAVAHVLEMQG---RFKEGIAFMESWRDT---------WD-CSSMLRGHNWWHLAL-FYLERGDYEAALAIYDTH 212 (355)
T ss_pred CcHHHHHHHHHHHHcC---CHHHHHHHHHhhhhc---------cC-CCcchhHHHHHHHHH-HHHHCCCHHHHHHHHHHH
Confidence 5788999999999999 999988776432210 10 000011122333333 367788888888887775
Q ss_pred H
Q 020832 239 K 239 (321)
Q Consensus 239 ~ 239 (321)
.
T Consensus 213 ~ 213 (355)
T cd05804 213 I 213 (355)
T ss_pred h
Confidence 3
No 109
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=30.60 E-value=1.8e+02 Score=25.30 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=28.4
Q ss_pred CChhhhHHHHHHHHhccCChhHHHHHHHHhHHh
Q 020832 251 PSDLIQFVFYVLQTLERDALPLFNMLRANYKAS 283 (321)
Q Consensus 251 ~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~ 283 (321)
..-|.||++.|+--+-.+....|..+..+-...
T Consensus 51 akaL~~FCq~LvDYlSaGHF~iYe~i~~k~~~~ 83 (162)
T COG3160 51 AKALDDFCQSLVDYLSAGHFSIYERILHKLEGN 83 (162)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 467899999999999999999999888777654
No 110
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=28.87 E-value=1.3e+02 Score=24.56 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=36.5
Q ss_pred HHHHHhhhh---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCC
Q 020832 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (321)
Q Consensus 40 l~~Ry~~~~---k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~ 89 (321)
++.|...+| +|.||+.++..-.....+.| .+.+||...=-.++....+
T Consensus 19 lA~rR~~rGlkLN~pEAvAlIs~~v~E~aRdG--~svaelm~~g~~~L~~~dV 69 (102)
T TIGR00193 19 LAKKRKARGVKLNYPEAVAYISAHIMEGARDG--KKVAELMQYGRTLLTPDDV 69 (102)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhCCHHhc
Confidence 445555555 89999999999988888888 5888887766667766543
No 111
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=28.73 E-value=75 Score=19.96 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCCChHHHhhHhh
Q 020832 163 HVMLAEYLYSESPELDMARVSFHFV 187 (321)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl 187 (321)
+..+|.+|.+.| ++.+|..++-
T Consensus 2 l~~Lg~~~~~~g---~~~~Ai~~y~ 23 (36)
T PF13176_consen 2 LNNLGRIYRQQG---DYEKAIEYYE 23 (36)
T ss_dssp HHHHHHHHHHCT----HHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHH
Confidence 356899999999 9999987764
No 112
>PRK13242 ureA urease subunit gamma; Provisional
Probab=28.65 E-value=1.3e+02 Score=24.45 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHhhhh---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCC
Q 020832 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (321)
Q Consensus 40 l~~Ry~~~~---k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~ 89 (321)
++.|-..+| +|.||+.|+.+-.....+.| -+.+||...=-.++....+
T Consensus 19 lA~~R~~rGlkLN~pEAvAlIs~~i~E~aRdG--~svaelm~~g~~vL~~~dV 69 (100)
T PRK13242 19 VALKRKNKGLKLNHPEAVAVLSAYVLDGAREG--KTVEEVMDGARSVLKADDV 69 (100)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhCCHHhc
Confidence 344555555 89999999999998888888 5888887766666766543
No 113
>PRK13241 ureA urease subunit gamma; Provisional
Probab=28.30 E-value=1.3e+02 Score=24.49 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=36.0
Q ss_pred HHHHHhhhh---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCC
Q 020832 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (321)
Q Consensus 40 l~~Ry~~~~---k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~ 89 (321)
++.|-..+| +|.||+.++.+-.....+.| -+-+||...--.++....+
T Consensus 19 lA~~R~~rGlkLN~pEAvAlI~~~v~E~aRdG--~svaelm~~g~~~L~~ddV 69 (100)
T PRK13241 19 LAERRKARGLKLNYPEAVALISDALLEGARDG--KTVAELMSYGRTVLTRDDV 69 (100)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhCC--CCHHHHHHHhhhhCCHHhc
Confidence 344444555 89999999999998888888 5888887777677766543
No 114
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.89 E-value=55 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhCHHHHHHHHHHHHH
Q 020832 32 GAQQMYKSISARYVAAQRYSEALDLLHAGAC 62 (321)
Q Consensus 32 EAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~ 62 (321)
+.|++|+.++-=|-.+|.|.+|++++.+-+.
T Consensus 37 ~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 37 KEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677788888888899999999999986554
No 115
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.41 E-value=2.6e+02 Score=25.73 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=34.1
Q ss_pred HHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCC
Q 020832 40 ISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (321)
Q Consensus 40 l~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~ 88 (321)
++.=|.+.|+|++|++++...+..+-+.|=+.-.+++...+.+++...+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3344566777777777777776666667777777777777777776654
No 116
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.21 E-value=69 Score=30.36 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhh
Q 020832 29 NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVK 86 (321)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~ 86 (321)
+-.+..+.++++..--. -...|++.|+|..|.||+.-.-++++.
T Consensus 116 ~ll~~L~~i~~v~~~~~--------------~l~~ll~~~dy~~Al~li~~~~~~l~~ 159 (291)
T PF10475_consen 116 KLLEKLEQIKTVQQTQS--------------RLQELLEEGDYPGALDLIEECQQLLEE 159 (291)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 35667777777754322 233566888888888888888887754
No 117
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=26.91 E-value=4.5e+02 Score=27.64 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHhcCChh---HHHHHHHHHHHHhhhhccCCCCChhh-hHHHHHHHHh
Q 020832 221 MYLSLGNMK---DANYIMDEVKKQVENKQLQLQPSDLI-QFVFYVLQTL 265 (321)
Q Consensus 221 ~~L~l~n~~---~A~~~~~~f~~~~~~~~~~~~~~PlL-nF~~lLl~t~ 265 (321)
.+|++||.- +++.++-.|.++.+.-...+..+.|+ |.+.+.+.+.
T Consensus 479 tLLAIGNfLnGT~~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE~F 527 (817)
T KOG1925|consen 479 TLLAIGNFLNGTQSKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVETF 527 (817)
T ss_pred HHHHHhccccCccccceehHhhhhchhhcchHHHHHHHHHHHHHHHHhC
Confidence 346677764 66677777877776544443334443 3444444443
No 118
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=26.70 E-value=3.2e+02 Score=21.61 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHH---HHHHHHhhCCCCCChhHHHHHHHHHHhCC
Q 020832 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAV---SFVEALVKGKVAYDNENLDRVRKIYELFP 107 (321)
Q Consensus 33 AhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~---~lvev~~~~~~~~~~~~~~rl~~l~~~~p 107 (321)
|+++..++..+|....+.-++.-........-++.+...+-.|-.. .+++-+...|.++++. ..+..++..+|
T Consensus 3 A~e~W~~L~~~y~~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~--~~v~~iL~~Lp 78 (119)
T PF14223_consen 3 AKEAWDALKKRYEGQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDE--DLVSKILRSLP 78 (119)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccch--hHHHHHHhcCC
Confidence 7889999999998888766677666666666667666555555333 3344555667777763 44556777777
No 119
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=26.69 E-value=3.9e+02 Score=25.65 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=58.6
Q ss_pred hhhhHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcC-CCCChHHHhhHhhc-CCChHHHHHHHHHHhhccCCChhHH
Q 020832 136 EGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSES-PELDMARVSFHFVR-GNNPEKFASTIVNFMGKCYPGEDDL 213 (321)
Q Consensus 136 ~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~-~~~~~~~A~~Hfl~-~~~~~~~a~~L~ew~~~~~~~e~dl 213 (321)
++..-|++-|++.-.+ -.-+|+|-+-+|..+-++- ..+++.+|.+-+++ |++|+ .-++||...-...|.+
T Consensus 142 ~e~elflkic~~~g~~----i~~~pellq~~~~~lr~~v~~~~~ik~~vy~~mr~~e~~~---~~~vew~~~lte~e~~- 213 (317)
T PRK15379 142 EERQLFLQICEVIGAK----MTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPD---HPLVEWQDSLTEDEKS- 213 (317)
T ss_pred hHHHHHHHHHHHhccc----cccCHHHHHHHHHHHHHHhccccHHHHHHHHhhCCccCCC---cceeeecCcCCHHHHH-
Confidence 3457898888876543 3469999999999998872 23477889999998 56676 3568996655445554
Q ss_pred HHHHHHHHHHhcCChhHHHH
Q 020832 214 AVARAILMYLSLGNMKDANY 233 (321)
Q Consensus 214 fi~RaVL~~L~l~n~~~A~~ 233 (321)
-|-.|..|++.--..
T Consensus 214 -----~l~cl~~g~f~~~tq 228 (317)
T PRK15379 214 -----MLACINAGNFEPTTQ 228 (317)
T ss_pred -----HHHHhhcCCCcchhh
Confidence 244566677764433
No 120
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.64 E-value=2.1e+02 Score=22.21 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCC---cchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 020832 35 QMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQ---LTCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (321)
Q Consensus 35 Q~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q---~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~ 103 (321)
+.---++-.++..++|++|++.|. .+++... -+.+=..++-+.+++... .|+..+...||..++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll----~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLL----ELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH----HHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH----HHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHh
Confidence 333456778999999999999998 5555532 234444444444544443 355566677776653
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.37 E-value=6.1e+02 Score=24.63 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 020832 167 AEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK 240 (321)
Q Consensus 167 a~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~ 240 (321)
|..++..+ +|..|..+|- +. -+..|...+.+..|+.. |+.+++...|...++.-+.
T Consensus 9 a~~a~~~~---~~~~Ai~~~~---------~A-----l~~~P~~~~a~~~~a~~-~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 9 AKEAFVDD---DFALAVDLYT---------QA-----IDLDPNNAELYADRAQA-NIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHcC---CHHHHHHHHH---------HH-----HHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 55566666 7776665542 11 12234555667777664 4667888888887766554
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.27 E-value=4.7e+02 Score=27.39 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 020832 164 VMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (321)
Q Consensus 164 ~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (321)
+.=|+-+++.+ +|..|..|+-- ++. -.|.+.-+|--|| +.|+-++++..|-.--....+..|
T Consensus 362 r~kGne~Fk~g---dy~~Av~~Yte---------AIk-----r~P~Da~lYsNRA-ac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 362 REKGNEAFKKG---DYPEAVKHYTE---------AIK-----RDPEDARLYSNRA-ACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHHHHhcc---CHHHHHHHHHH---------HHh-----cCCchhHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcCc
Confidence 33477778888 88888877632 211 2266666666665 678888888766665433333211
Q ss_pred hhccCCCCChhhhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHHHHHhc
Q 020832 244 NKQLQLQPSDLIQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDIAEKFF 302 (321)
Q Consensus 244 ~~~~~~~~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~Ig~~yF 302 (321)
. ++-.++=..+--....-|..--+.|+.-++.||+-.++++.|++-+=
T Consensus 424 ----~-------~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 424 ----N-------FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred ----h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1 11111111111122345666668888889999999999988887665
No 123
>PF13041 PPR_2: PPR repeat family
Probab=25.46 E-value=1.1e+02 Score=20.41 Aligned_cols=18 Identities=11% Similarity=0.098 Sum_probs=10.5
Q ss_pred HhhCCCCCChhHHHHHHH
Q 020832 84 LVKGKVAYDNENLDRVRK 101 (321)
Q Consensus 84 ~~~~~~~~~~~~~~rl~~ 101 (321)
..+.++++|..+..-+++
T Consensus 29 M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 29 MKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHcCCCCCHHHHHHHHH
Confidence 345666677666555543
No 124
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.09 E-value=2.1e+02 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCC
Q 020832 55 DLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPV 111 (321)
Q Consensus 55 ~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~ 111 (321)
++-+.-|..+...|+...|.|+.. ..+.+..---|++.+.+|+++|+++.+.+|
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 445566778888899988887754 445565555577888999999999998875
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=24.56 E-value=2.7e+02 Score=19.89 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcch-HHHHHHHHHHHHhhCC
Q 020832 35 QMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTC-GAELAVSFVEALVKGK 88 (321)
Q Consensus 35 Q~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s-~~DL~~~lvev~~~~~ 88 (321)
..|..+..-|...++|++|++.+.+.....-..|...- -+.....+-.++...+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g 60 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 45667777788888999999988888877445554321 2333334445665554
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=24.55 E-value=4.1e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
..+.++|++= --++|+.|..+|.++...| ++.+|..+|-.
T Consensus 78 ~~~y~~Al~l-------~p~~~~a~~~lg~~l~~~g---~~~eAi~~~~~ 117 (144)
T PRK15359 78 INFYGHALML-------DASHPEPVYQTGVCLKMMG---EPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHhc-------CCCCcHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 5666666641 1368999999999999999 99999988754
No 127
>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.
Probab=24.48 E-value=1.7e+02 Score=23.47 Aligned_cols=55 Identities=24% Similarity=0.464 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCCCCCCchhHHHHHHHhhhhhhhhhhhHHHHHHHHHhh-h-c-CCCCCCCHHHHHHHH
Q 020832 91 YDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSI-E-F-GAPKTGSPELHVMLA 167 (321)
Q Consensus 91 ~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~e~~~~~~~~~~~~~~fl~~ai~WS~-~-~-g~~~~Gdp~LH~~la 167 (321)
.|...+.++++.++.+|....+. . .. ..+ +.|-+ + + |++..|.|-+|..+|
T Consensus 27 ~~A~rm~~vV~FY~kLPkGpAp~-~--k~-------------------~g~----~grYkakYFdGkNaSgkPllHli~~ 80 (95)
T PF10791_consen 27 PNAARMARVVSFYKKLPKGPAPA-P--KP-------------------TGL----LGRYKAKYFDGKNASGKPLLHLIGG 80 (95)
T ss_pred cchHHHHHHHHHHHhCCCCCCCC-C--CC-------------------Cch----HHHHHHHHcCCCCCccccHHHHHHH
Confidence 45578899999999999775432 0 00 111 23322 2 2 777899999999999
Q ss_pred HHHH
Q 020832 168 EYLY 171 (321)
Q Consensus 168 ~~~~ 171 (321)
....
T Consensus 81 l~~i 84 (95)
T PF10791_consen 81 LFLI 84 (95)
T ss_pred HHHH
Confidence 8876
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.47 E-value=4.9e+02 Score=22.87 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=33.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhhhccCCCCChhhhHHHHHHHHh-----------ccCC------hhHHHHHHHHhH
Q 020832 219 ILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVLQTL-----------ERDA------LPLFNMLRANYK 281 (321)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PlLnF~~lLl~t~-----------e~~~------~~~F~~L~~~Y~ 281 (321)
+--+...++...|...++.|.+.+|.. |.+-.+.+++--| +++. ...|+.|.++|.
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi~~yP~~-------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFIKLYPNS-------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH-TT--------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC-------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 334567899999999999999988743 3333333332222 4433 467777877776
Q ss_pred Hh
Q 020832 282 AS 283 (321)
Q Consensus 282 ~~ 283 (321)
.+
T Consensus 122 ~S 123 (203)
T PF13525_consen 122 NS 123 (203)
T ss_dssp TS
T ss_pred Cc
Confidence 54
No 129
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=23.98 E-value=1.8e+02 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=11.2
Q ss_pred hHHHHHHHHHhhh
Q 020832 139 SSFLKAAIKWSIE 151 (321)
Q Consensus 139 ~~fl~~ai~WS~~ 151 (321)
.++++.+..|...
T Consensus 64 ~~LL~~ir~WNTN 76 (141)
T PF08625_consen 64 EKLLRFIRDWNTN 76 (141)
T ss_pred HHHHHHHHHhhcc
Confidence 8899999999874
No 130
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.94 E-value=3.4e+02 Score=20.84 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=45.8
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHhhhhCHH----HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCC
Q 020832 21 LEKIVNEGNFYGAQQMYKSISARYVAAQRYS----EALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (321)
Q Consensus 21 l~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~----eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~ 88 (321)
.-..+..|||++|..-++-.+=+...+..-. -+..+| .-|......|++..|.+....-|.+-.+.+
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all-~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALL-NLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4467888999999877777776665554322 233333 355566677888888888877777777765
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.90 E-value=1.3e+02 Score=17.64 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhCHHHHHHHHH
Q 020832 36 MYKSISARYVAAQRYSEALDLLH 58 (321)
Q Consensus 36 ~~RTl~~Ry~~~~k~~eAi~lL~ 58 (321)
.|.++..=+.+.++++.|.+++.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~ 25 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFD 25 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 46666777777777777766665
No 132
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=23.60 E-value=2.2e+02 Score=22.40 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHH
Q 020832 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALD 55 (321)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~ 55 (321)
+.+++..+|++.++ ...|.|..++||-.+|-....+++...+
T Consensus 14 ~~~~iak~i~~~~~-~~~~~A~~iarTe~~~a~~~~~~~~~~~ 55 (108)
T TIGR01641 14 GPNELAKRLRKELG-VQKHYAQRLARTETARIYNQTKLERYKK 55 (108)
T ss_pred CHHHHHHHHHHHHC-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888884 5699999999999999999888766543
No 133
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=23.36 E-value=1.1e+03 Score=26.64 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=47.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHH
Q 020832 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLD 97 (321)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~ 97 (321)
..|.......+.+=||.++.|-+|.++. .-.+-|.+.+-.+++.|+...+.+|.....+. ....-.+..-+.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~ 417 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEP------ANLTRLDQLTWQLMQNGQSREAADLLLQRYPF--QGDARLSQTLMA 417 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC--CcccccCHHHHH
Confidence 4555555666677777777666544421 12334555666777778877777775444333 222223444556
Q ss_pred HHHHHHHhCCC
Q 020832 98 RVRKIYELFPQ 108 (321)
Q Consensus 98 rl~~l~~~~p~ 108 (321)
||+.++..-|.
T Consensus 418 ~l~~~~~~~~~ 428 (987)
T PRK09782 418 RLASLLESHPY 428 (987)
T ss_pred HHHHHHHhCCc
Confidence 78777776553
No 134
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=22.43 E-value=5.2e+02 Score=24.50 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhcC
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (321)
-|+++|+..|+..+..| +|..|..||=..
T Consensus 98 ~d~~ll~~~gk~~~~~g---~~~~A~~~~rkA 126 (257)
T COG5010 98 KDRELLAAQGKNQIRNG---NFGEAVSVLRKA 126 (257)
T ss_pred ccHHHHHHHHHHHHHhc---chHHHHHHHHHH
Confidence 37889999999999999 999999888643
No 135
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=21.76 E-value=4.1e+02 Score=21.01 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHH------HHHHHHHHhhCCCCCChhHHHHHHHHHHhC
Q 020832 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAEL------AVSFVEALVKGKVAYDNENLDRVRKIYELF 106 (321)
Q Consensus 33 AhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL------~~~lvev~~~~~~~~~~~~~~rl~~l~~~~ 106 (321)
|.++..++-..|.+..... .+-++. .|... ++..+.++ ..-++.-++..+++++++ ..+.-|+..+
T Consensus 4 a~~~W~~L~~~y~~~~~~~-~~~l~~----kl~~~-k~~~~~~v~~hi~~~~~l~~~L~~~g~~i~d~--~~~~~lL~sL 75 (119)
T PF14227_consen 4 AKEMWDKLKKKYEKKSFAN-KIYLLR----KLYSL-KMDEGGSVRDHINEFRSLVNQLKSLGVPIDDE--DKVIILLSSL 75 (119)
T ss_pred HHHHHHHHHHHHcCCCHHH-HHHHHH----HHHHh-HhccchhHHHHHHHHHHHHHhhccccccchHH--HHHHHHHHcC
Confidence 6677777777776653222 222222 22222 22233333 233445566677888876 4466778877
Q ss_pred CCC
Q 020832 107 PQI 109 (321)
Q Consensus 107 p~~ 109 (321)
|+.
T Consensus 76 P~s 78 (119)
T PF14227_consen 76 PPS 78 (119)
T ss_pred CHh
Confidence 743
No 136
>PRK11189 lipoprotein NlpI; Provisional
Probab=21.41 E-value=5.4e+02 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCChHHHhhHhhc
Q 020832 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (321)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (321)
.+|+.|..+|.++...+ ++..|...|-.
T Consensus 96 ~~~~a~~~lg~~~~~~g---~~~~A~~~~~~ 123 (296)
T PRK11189 96 DMADAYNYLGIYLTQAG---NFDAAYEAFDS 123 (296)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 47899999999999999 99998877653
No 137
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=21.36 E-value=1.2e+02 Score=28.38 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.8
Q ss_pred HHHhhhhCHHHHHHHHHHHHHHHHHCC
Q 020832 42 ARYVAAQRYSEALDLLHAGACLQLKNN 68 (321)
Q Consensus 42 ~Ry~~~~k~~eAi~lL~~ga~~ll~~~ 68 (321)
..++++++|+||.++|..-+..|+..+
T Consensus 13 LQl~K~~~yeeAkqvL~yFs~~F~~~~ 39 (233)
T TIGR02878 13 LQLTKQARYEEAKQVLEYFSKQFVSAG 39 (233)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 457789999999999999999998664
No 138
>PF11934 DUF3452: Domain of unknown function (DUF3452); InterPro: IPR024599 This domain is found in proteins of the retinoblastoma protein family. It is found in association with Pfam:PF01858 and Pfam:PF01857. This domain is typically between 124 to 150 amino acids in length and has a single completely conserved residue W that may be functionally important.; PDB: 2QDJ_A 4ELJ_A.
Probab=21.30 E-value=69 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=27.0
Q ss_pred CChhhhHHHHHHHHhccCChhHHHHHHHHhHHhh
Q 020832 251 PSDLIQFVFYVLQTLERDALPLFNMLRANYKASI 284 (321)
Q Consensus 251 ~~PlLnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l 284 (321)
..-+.+|.|+|.+++....++.+.+|...|+-.+
T Consensus 94 ~~~l~~f~W~LFL~~K~~~~~~~~DLV~s~~LLl 127 (136)
T PF11934_consen 94 YSDLFRFGWLLFLAAKGKFPSIFDDLVTSYHLLL 127 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccHHHHHHHHH
Confidence 3568999999999999888889999999998765
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=21.24 E-value=1.2e+03 Score=26.24 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHhHHhhhcchhHHHHHHHH
Q 020832 255 IQFVFYVLQTLERDALPLFNMLRANYKASIEREPAFNEMLDDI 297 (321)
Q Consensus 255 LnF~~lLl~t~e~~~~~~F~~L~~~Y~~~l~rd~~~~~~L~~I 297 (321)
+.++..+ +-.+.++...+..|.+.|+..-...|.+.++|...
T Consensus 243 i~iLK~i-L~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 243 IYILKKI-LEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred HHHHHHH-HhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence 5555533 33455566666667777776655567777766554
No 140
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.12 E-value=4e+02 Score=20.72 Aligned_cols=90 Identities=9% Similarity=0.091 Sum_probs=47.2
Q ss_pred ChHHHhhHhhcCCChH---HHHHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh---hhccCCCC
Q 020832 178 DMARVSFHFVRGNNPE---KFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE---NKQLQLQP 251 (321)
Q Consensus 178 ~~~~A~~Hfl~~~~~~---~~a~~L~ew~~~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~~~~---~~~~~~~~ 251 (321)
++.+|...+.--.-|. .++..+++..-+..+.+.+ ..=.++..|+..++-....+...|...+. +...-.|.
T Consensus 17 d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~--~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~ 94 (113)
T PF02847_consen 17 DVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYRE--YYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPK 94 (113)
T ss_dssp -HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHH--HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchH
Confidence 6666666665422223 4444444443333223444 33357777887777766666666655443 32222233
Q ss_pred ChhhhHHHHHHHHhccCCh
Q 020832 252 SDLIQFVFYVLQTLERDAL 270 (321)
Q Consensus 252 ~PlLnF~~lLl~t~e~~~~ 270 (321)
.| -|+..|+-.++..+.+
T Consensus 95 ~~-~~la~~~~~~i~~~~l 112 (113)
T PF02847_consen 95 AP-EYLAKFLARLIADGIL 112 (113)
T ss_dssp HH-HHHHHHHHHHHHTTSS
T ss_pred HH-HHHHHHHHHHHHcCCc
Confidence 33 6777777777776654
No 141
>PRK12370 invasion protein regulator; Provisional
Probab=20.86 E-value=9.2e+02 Score=24.78 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhc--CCC---hHH---HHHHHH---------H
Q 020832 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR--GNN---PEK---FASTIV---------N 201 (321)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~--~~~---~~~---~a~~L~---------e 201 (321)
....++|++.. -.+++.|..+|.+++..+ ++.+|..+|-. .-+ +.. ++..+. +
T Consensus 324 ~~~~~~Al~ld-------P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 324 KEHAIKATELD-------HNNPQALGLLGLINTIHS---EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45556666542 248899999999999999 89888888743 222 221 121111 1
Q ss_pred Hhh---ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 020832 202 FMG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK 240 (321)
Q Consensus 202 w~~---~~~~~e~dlfi~RaVL~~L~l~n~~~A~~~~~~f~~ 240 (321)
|+. +-.|........++.. ++..++...|...+....+
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~-~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWI-TYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHH-HHhccCHHHHHHHHHHHHH
Confidence 111 1234433333444443 4446788888887766554
No 142
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=20.64 E-value=2e+02 Score=20.42 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHhhCCCCCChhHHHHHHHHHH
Q 020832 83 ALVKGKVAYDNENLDRVRKIYE 104 (321)
Q Consensus 83 v~~~~~~~~~~~~~~rl~~l~~ 104 (321)
.++++|+.+++..+-||+.|..
T Consensus 11 yL~~~G~~~~D~rv~RLvSLaa 32 (51)
T PF03540_consen 11 YLERSGFQTSDPRVKRLVSLAA 32 (51)
T ss_pred HHHHCCCCCCCHhHHHHHHHHH
Confidence 4788999999988888888864
No 143
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=20.62 E-value=2.8e+02 Score=23.88 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhccCChhHHHHHHHHH
Q 020832 13 PAQENIDKLEKIVNEGNFYGAQQMYKSI 40 (321)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl 40 (321)
..++.+...++.++.|+.=+|.|.++.+
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~ 101 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLA 101 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4555666667777777777777777643
No 144
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.50 E-value=1.7e+02 Score=30.55 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=25.3
Q ss_pred hccCChhHHHHHHHHHHHHHhhhhCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHhhCCCCCChhHHHHH
Q 020832 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRV 99 (321)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~~k~~eAi~lL~~ga~~ll~~~Q~~s~~DL~~~lvev~~~~~~~~~~~~~~rl 99 (321)
-+-|=--+|...+|+...|..++|+|-+|+.-.. +.|.......++..+++.+...+.+.+++.++.|
T Consensus 416 ~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~-------ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i 483 (566)
T PF07575_consen 416 AELGLEDVAREICKILGQRLLKEGRYGEALSWFI-------RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNI 483 (566)
T ss_dssp HHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHh
Confidence 3445555788889999999999888888877554 6677777777777777666666666655444433
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=20.44 E-value=6.7e+02 Score=22.97 Aligned_cols=70 Identities=10% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCChHHHhhHhhcCCChHHHHHHHHHHhhccCCChhHHHHHHHH----HHHHhcCChhHH
Q 020832 156 KTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAI----LMYLSLGNMKDA 231 (321)
Q Consensus 156 ~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~~~~~~a~~L~ew~~~~~~~e~dlfi~RaV----L~~L~l~n~~~A 231 (321)
+..+++-+..-|..+++.| +|.+|..+|- +++ ..+|... ++.++- .-|.-.++...|
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g---~y~~Ai~~f~---------~l~-----~~yP~s~--~a~~a~l~la~ayy~~~~y~~A 88 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDG---NWKQAITQLE---------ALD-----NRYPFGP--YSQQVQLDLIYAYYKNADLPLA 88 (243)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHH---------HHH-----HhCCCCh--HHHHHHHHHHHHHHhcCCHHHH
Confidence 3457777778888888888 8888875542 121 1222211 222222 334557899999
Q ss_pred HHHHHHHHHHhhh
Q 020832 232 NYIMDEVKKQVEN 244 (321)
Q Consensus 232 ~~~~~~f~~~~~~ 244 (321)
...++.|++.+|.
T Consensus 89 ~~~~e~fi~~~P~ 101 (243)
T PRK10866 89 QAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHhCcC
Confidence 9999999997764
No 146
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=20.25 E-value=1.7e+02 Score=17.29 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 020832 215 VARAILMYLSLGNMKDANYIM 235 (321)
Q Consensus 215 i~RaVL~~L~l~n~~~A~~~~ 235 (321)
+.|.|++||.-.....+...|
T Consensus 6 l~~lI~~yL~~~g~~~ta~~l 26 (34)
T smart00667 6 LNRLILEYLLRNGYEETAETL 26 (34)
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 678999999977666555433
Done!