Query 020833
Match_columns 321
No_of_seqs 108 out of 1272
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1E-38 2.2E-43 299.7 32.5 302 9-312 10-318 (358)
2 PRK11272 putative DMT superfam 100.0 8.4E-33 1.8E-37 254.3 30.5 267 11-312 7-275 (292)
3 PRK11453 O-acetylserine/cystei 100.0 4.4E-32 9.5E-37 250.3 29.8 266 13-312 5-277 (299)
4 PRK11689 aromatic amino acid e 100.0 3.6E-32 7.8E-37 250.4 26.3 271 10-312 2-277 (295)
5 PRK15430 putative chlorampheni 100.0 1.8E-31 3.9E-36 245.9 27.4 269 7-313 3-276 (296)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 9.7E-31 2.1E-35 236.1 28.1 253 24-313 1-255 (260)
7 PRK10532 threonine and homoser 100.0 2.8E-30 6.1E-35 237.6 29.1 263 9-312 9-271 (293)
8 TIGR00688 rarD rarD protein. T 100.0 1.2E-27 2.5E-32 216.0 25.8 248 12-297 2-255 (256)
9 TIGR00817 tpt Tpt phosphate/ph 100.0 5.1E-27 1.1E-31 216.8 26.7 259 25-312 15-283 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.9 1.6E-25 3.5E-30 204.8 23.7 268 14-313 3-274 (281)
11 PTZ00343 triose or hexose phos 99.9 7.2E-24 1.6E-28 199.5 28.1 272 11-312 48-338 (350)
12 COG0697 RhaT Permeases of the 99.9 3E-22 6.6E-27 182.3 29.6 270 9-312 4-277 (292)
13 PF06027 DUF914: Eukaryotic pr 99.9 1.5E-19 3.3E-24 167.2 28.2 269 23-312 24-295 (334)
14 COG2962 RarD Predicted permeas 99.9 1.7E-19 3.6E-24 160.0 26.4 266 10-312 5-273 (293)
15 TIGR00776 RhaT RhaT L-rhamnose 99.9 3.3E-19 7.1E-24 163.8 24.6 268 13-312 2-278 (290)
16 COG5006 rhtA Threonine/homoser 99.8 5.5E-19 1.2E-23 153.0 23.4 260 13-312 13-272 (292)
17 KOG4510 Permease of the drug/m 99.8 2.4E-20 5.3E-25 162.4 2.8 280 9-312 35-315 (346)
18 PF08449 UAA: UAA transporter 99.7 1.7E-13 3.6E-18 126.8 27.6 251 41-312 32-287 (303)
19 KOG2765 Predicted membrane pro 99.6 1.7E-14 3.8E-19 131.6 14.6 207 87-312 170-380 (416)
20 PF00892 EamA: EamA-like trans 99.5 1.4E-13 3E-18 109.5 9.2 124 22-153 1-125 (126)
21 COG2510 Predicted membrane pro 99.4 1.2E-12 2.6E-17 102.5 10.2 135 12-153 3-138 (140)
22 PF00892 EamA: EamA-like trans 99.3 5.2E-12 1.1E-16 100.4 8.9 116 193-312 1-116 (126)
23 PF04142 Nuc_sug_transp: Nucle 99.3 8.2E-10 1.8E-14 98.8 22.0 227 72-312 13-243 (244)
24 COG2510 Predicted membrane pro 99.3 5E-11 1.1E-15 93.4 11.9 126 185-313 5-130 (140)
25 KOG1441 Glucose-6-phosphate/ph 99.3 7.6E-11 1.7E-15 108.3 13.3 256 25-312 30-297 (316)
26 TIGR00950 2A78 Carboxylate/Ami 99.2 7.2E-10 1.6E-14 99.8 15.2 132 9-149 125-259 (260)
27 PF13536 EmrE: Multidrug resis 99.1 2.7E-10 5.8E-15 89.9 7.4 101 46-153 2-105 (113)
28 KOG2234 Predicted UDP-galactos 99.1 3.4E-07 7.5E-12 84.1 28.1 280 12-312 15-312 (345)
29 KOG1444 Nucleotide-sugar trans 99.1 9.1E-08 2E-12 86.7 23.2 273 9-312 9-290 (314)
30 KOG2766 Predicted membrane pro 98.9 2.1E-09 4.5E-14 94.0 5.4 263 17-312 24-289 (336)
31 KOG1580 UDP-galactose transpor 98.9 5.2E-08 1.1E-12 84.3 13.7 213 79-312 88-303 (337)
32 PRK11272 putative DMT superfam 98.8 9.7E-08 2.1E-12 87.9 14.6 136 10-153 148-284 (292)
33 KOG1443 Predicted integral mem 98.8 1.5E-06 3.2E-11 78.2 20.6 281 4-315 7-308 (349)
34 PRK15430 putative chlorampheni 98.8 1.1E-07 2.4E-12 87.7 13.5 128 181-312 6-135 (296)
35 TIGR03340 phn_DUF6 phosphonate 98.8 1.4E-07 3E-12 86.3 14.0 123 185-312 3-125 (281)
36 PRK10532 threonine and homoser 98.8 2.3E-07 4.9E-12 85.4 15.0 134 10-153 146-280 (293)
37 PF03151 TPT: Triose-phosphate 98.7 2.7E-07 5.9E-12 76.2 13.6 128 184-312 1-143 (153)
38 TIGR00688 rarD rarD protein. T 98.7 2.1E-07 4.7E-12 83.8 12.9 127 183-312 2-132 (256)
39 KOG1581 UDP-galactose transpor 98.7 2.6E-06 5.5E-11 76.7 19.0 248 40-312 50-303 (327)
40 PRK11689 aromatic amino acid e 98.7 5.2E-07 1.1E-11 83.1 14.1 132 11-153 155-286 (295)
41 PLN00411 nodulin MtN21 family 98.6 1.1E-06 2.4E-11 83.1 15.3 135 12-154 189-328 (358)
42 TIGR00817 tpt Tpt phosphate/ph 98.5 7.2E-07 1.6E-11 82.4 10.1 138 10-153 143-292 (302)
43 PF03151 TPT: Triose-phosphate 98.5 5.6E-06 1.2E-10 68.3 13.7 133 13-151 1-150 (153)
44 PRK11453 O-acetylserine/cystei 98.5 6.5E-06 1.4E-10 76.0 15.6 138 10-153 141-286 (299)
45 KOG3912 Predicted integral mem 98.4 1.7E-05 3.6E-10 70.7 16.8 212 82-312 92-324 (372)
46 PF06800 Sugar_transport: Suga 98.4 0.00013 2.8E-09 65.8 20.6 210 74-308 43-253 (269)
47 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.9E-05 4E-10 63.7 12.1 108 184-312 3-112 (129)
48 TIGR00776 RhaT RhaT L-rhamnose 98.3 1.4E-05 3E-10 73.5 12.6 134 10-153 150-287 (290)
49 PTZ00343 triose or hexose phos 98.2 4E-05 8.7E-10 72.4 15.4 138 10-153 192-347 (350)
50 PRK15051 4-amino-4-deoxy-L-ara 98.2 7.8E-06 1.7E-10 64.2 8.8 67 81-153 41-108 (111)
51 COG0697 RhaT Permeases of the 98.2 6.4E-05 1.4E-09 68.0 14.9 133 10-153 152-286 (292)
52 TIGR00803 nst UDP-galactose tr 98.2 2.1E-05 4.5E-10 69.4 11.2 194 106-312 8-214 (222)
53 COG5070 VRG4 Nucleotide-sugar 98.2 2.3E-05 5E-10 67.7 10.7 245 42-312 38-286 (309)
54 PF13536 EmrE: Multidrug resis 98.1 1.8E-05 3.9E-10 62.2 8.3 63 249-312 34-96 (113)
55 PRK13499 rhamnose-proton sympo 98.1 0.0035 7.6E-08 58.7 24.1 287 9-312 4-331 (345)
56 KOG1442 GDP-fucose transporter 98.0 2.6E-05 5.6E-10 69.3 7.9 247 40-311 60-316 (347)
57 PRK15051 4-amino-4-deoxy-L-ara 98.0 6E-05 1.3E-09 59.1 9.3 58 256-313 43-100 (111)
58 PF05653 Mg_trans_NIPA: Magnes 98.0 7.6E-05 1.7E-09 68.9 11.3 118 10-155 5-123 (300)
59 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00046 1E-08 55.6 11.5 117 12-153 2-121 (129)
60 KOG4314 Predicted carbohydrate 97.8 0.00032 6.9E-09 59.6 10.5 97 87-208 64-160 (290)
61 PF06800 Sugar_transport: Suga 97.6 0.00099 2.1E-08 60.1 11.6 132 9-149 135-266 (269)
62 PF06027 DUF914: Eukaryotic pr 97.3 0.0026 5.7E-08 59.4 11.6 140 8-154 164-305 (334)
63 COG2962 RarD Predicted permeas 97.2 0.0053 1.1E-07 55.5 11.1 128 182-312 6-134 (293)
64 KOG2922 Uncharacterized conser 97.2 0.0054 1.2E-07 56.1 11.2 260 9-312 18-292 (335)
65 COG5006 rhtA Threonine/homoser 97.1 0.0088 1.9E-07 53.0 11.5 131 9-148 145-276 (292)
66 KOG1583 UDP-N-acetylglucosamin 97.1 0.02 4.4E-07 51.3 13.5 228 69-312 60-304 (330)
67 PF04657 DUF606: Protein of un 97.0 0.017 3.7E-07 47.1 11.9 124 185-312 3-131 (138)
68 PF08449 UAA: UAA transporter 96.9 0.02 4.2E-07 53.0 13.1 135 13-153 155-296 (303)
69 KOG1582 UDP-galactose transpor 96.7 0.057 1.2E-06 48.5 13.6 275 6-312 36-322 (367)
70 PRK13499 rhamnose-proton sympo 96.4 0.089 1.9E-06 49.4 13.6 145 8-153 170-340 (345)
71 PF00893 Multi_Drug_Res: Small 96.4 0.011 2.4E-07 44.7 6.1 57 257-313 36-93 (93)
72 PF10639 UPF0546: Uncharacteri 96.1 0.017 3.6E-07 45.3 5.9 109 18-151 2-111 (113)
73 PF05653 Mg_trans_NIPA: Magnes 96.0 0.039 8.5E-07 51.0 8.9 109 180-312 4-112 (300)
74 KOG1441 Glucose-6-phosphate/ph 95.6 0.03 6.6E-07 51.9 6.5 137 10-153 161-306 (316)
75 PRK10452 multidrug efflux syst 95.6 0.04 8.6E-07 43.7 6.1 61 87-153 41-102 (120)
76 PRK10650 multidrug efflux syst 95.5 0.23 5.1E-06 38.6 10.1 60 87-152 46-106 (109)
77 PRK09541 emrE multidrug efflux 95.4 0.063 1.4E-06 41.9 6.7 65 83-153 36-102 (110)
78 COG2076 EmrE Membrane transpor 95.4 0.046 1E-06 42.1 5.7 61 87-153 41-102 (106)
79 PRK09541 emrE multidrug efflux 95.3 0.093 2E-06 41.0 7.4 56 257-312 37-93 (110)
80 PRK10452 multidrug efflux syst 95.1 0.09 1.9E-06 41.7 6.9 57 256-312 36-93 (120)
81 PF04657 DUF606: Protein of un 95.1 0.65 1.4E-05 37.8 12.0 107 40-151 29-138 (138)
82 PRK11431 multidrug efflux syst 95.1 0.094 2E-06 40.6 6.6 60 87-152 40-100 (105)
83 KOG4510 Permease of the drug/m 95.1 0.026 5.6E-07 50.5 3.9 123 182-312 37-159 (346)
84 COG3238 Uncharacterized protei 95.0 0.66 1.4E-05 38.2 11.7 128 182-312 4-136 (150)
85 PF00893 Multi_Drug_Res: Small 94.8 0.1 2.2E-06 39.4 6.2 52 87-144 40-92 (93)
86 PRK10650 multidrug efflux syst 94.7 0.6 1.3E-05 36.3 10.3 55 258-312 43-98 (109)
87 PRK11431 multidrug efflux syst 94.1 0.25 5.5E-06 38.2 6.9 56 257-312 36-92 (105)
88 COG2076 EmrE Membrane transpor 93.9 0.25 5.4E-06 38.2 6.5 54 259-312 39-93 (106)
89 COG4975 GlcU Putative glucose 93.0 0.017 3.6E-07 51.1 -1.4 268 13-312 3-271 (288)
90 TIGR00803 nst UDP-galactose tr 92.3 1 2.3E-05 39.3 9.1 63 83-151 159-221 (222)
91 KOG2765 Predicted membrane pro 91.6 1.6 3.5E-05 41.1 9.6 138 9-153 244-389 (416)
92 COG3238 Uncharacterized protei 91.4 6.2 0.00013 32.5 11.9 118 30-151 24-143 (150)
93 KOG1444 Nucleotide-sugar trans 90.9 2 4.4E-05 39.6 9.5 138 10-153 155-299 (314)
94 KOG2922 Uncharacterized conser 88.9 0.41 8.8E-06 44.1 3.3 112 177-312 15-126 (335)
95 PF04142 Nuc_sug_transp: Nucle 86.2 2.9 6.3E-05 37.4 7.2 52 261-312 28-79 (244)
96 COG4975 GlcU Putative glucose 85.9 0.45 9.8E-06 42.3 1.8 115 184-308 3-118 (288)
97 KOG1580 UDP-galactose transpor 85.1 1.3 2.9E-05 39.1 4.3 71 76-152 241-311 (337)
98 PF07857 DUF1632: CEO family ( 82.4 23 0.00049 32.0 11.1 135 13-157 1-137 (254)
99 KOG4314 Predicted carbohydrate 81.6 2.1 4.6E-05 36.8 4.0 50 263-312 66-115 (290)
100 PF10639 UPF0546: Uncharacteri 80.9 6.9 0.00015 30.6 6.4 102 190-313 3-105 (113)
101 KOG1581 UDP-galactose transpor 80.8 22 0.00048 32.8 10.4 136 9-151 169-310 (327)
102 KOG1443 Predicted integral mem 79.1 39 0.00085 31.3 11.4 136 11-152 163-313 (349)
103 COG5070 VRG4 Nucleotide-sugar 75.9 15 0.00033 32.4 7.5 135 13-153 156-295 (309)
104 PF04306 DUF456: Protein of un 68.3 33 0.00071 27.9 7.6 69 249-320 33-102 (140)
105 KOG3912 Predicted integral mem 63.4 82 0.0018 29.0 9.6 137 10-152 174-332 (372)
106 COG4657 RnfA Predicted NADH:ub 62.7 31 0.00068 28.8 6.3 90 120-230 83-184 (193)
107 KOG1582 UDP-galactose transpor 53.3 34 0.00074 31.2 5.5 112 38-155 217-333 (367)
108 KOG2234 Predicted UDP-galactos 53.3 2E+02 0.0044 27.1 12.6 50 263-312 105-154 (345)
109 PF06570 DUF1129: Protein of u 45.3 2E+02 0.0043 24.8 11.6 13 21-33 94-106 (206)
110 KOG4831 Unnamed protein [Funct 40.1 44 0.00096 25.8 3.6 110 15-151 6-122 (125)
111 PF06379 RhaT: L-rhamnose-prot 37.1 2.6E+02 0.0057 26.3 8.9 142 177-321 1-160 (344)
112 PF07698 7TM-7TMR_HD: 7TM rece 36.6 2.6E+02 0.0056 23.5 18.7 33 201-234 120-152 (194)
113 KOG2766 Predicted membrane pro 35.0 47 0.001 30.1 3.5 135 8-152 162-297 (336)
114 PRK15462 dipeptide/tripeptide 33.9 3.1E+02 0.0067 27.2 9.5 48 105-152 310-360 (493)
115 KOG1442 GDP-fucose transporter 31.7 1.1E+02 0.0025 28.0 5.4 140 9-154 182-327 (347)
116 COG1742 Uncharacterized conser 28.4 1E+02 0.0023 23.7 3.9 22 133-154 83-104 (109)
117 COG3086 RseC Positive regulato 22.4 97 0.0021 25.4 3.0 29 95-123 67-95 (150)
118 COG3104 PTR2 Dipeptide/tripept 22.2 6.8E+02 0.015 25.0 9.3 49 105-154 326-378 (498)
119 PF11139 DUF2910: Protein of u 22.1 5.1E+02 0.011 22.2 10.0 44 110-153 160-210 (214)
120 PF04342 DUF486: Protein of un 20.9 96 0.0021 23.9 2.5 22 291-312 77-98 (108)
121 COG2246 Predicted membrane pro 20.6 2.7E+02 0.0059 22.4 5.4 58 72-133 9-69 (139)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1e-38 Score=299.70 Aligned_cols=302 Identities=36% Similarity=0.608 Sum_probs=241.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC 87 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~ 87 (321)
++.++++.|+.+.+.+++..++.|.+++.|++|..+.++|+.+|++++.++.+.++|++ +++.+++++.+..+.|++++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999998876544322 34456788888999999986
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 167 (321)
.++.++++|++|++++.++++.+++|+++.+++++++.|+++.++|.++.|++|+++|++|+.++...+++.... .+|+
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~ 168 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSP 168 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cccc
Confidence 677799999999999999999999999999999999777777777777788999999999999877544432100 0000
Q ss_pred C--CC---CcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc
Q 020833 168 G--SP---RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDW 241 (321)
Q Consensus 168 ~--~~---~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~-~~~~ 241 (321)
+ +. .........+...|+++.++|+++||+|++++|+..+++++....++|++.++++...+.++..++. ...|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW 248 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccc
Confidence 0 00 0000111234467999999999999999999999988887666778899888888877777765532 2233
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 242 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
....+.....++|.+++ +.++|.+|++++++.||++++.+.+++|++++++|++++||++++.+++|+++
T Consensus 249 ~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~L 318 (358)
T PLN00411 249 IIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL 318 (358)
T ss_pred eeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 22222234567888875 67899999999999999999999999999999999999999999999999998
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=8.4e-33 Score=254.28 Aligned_cols=267 Identities=12% Similarity=0.079 Sum_probs=217.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 020833 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS 89 (321)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~ 89 (321)
..-...++...++||++++++|.+.+ ++||.+++++|+.+++++++++... ++++ ..+++++.+....|.++ ..+
T Consensus 7 ~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 7 LPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL--RGHP-LPTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH--hCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 33456677888999999999999876 6999999999999999998887543 2222 23466777788888887 677
Q ss_pred HHHHHHhh-cccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833 90 QIFSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 168 (321)
Q Consensus 90 ~~~~~~al-~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~ 168 (321)
+.+++++. ++++++.++++.++.|+++++++.+ +|||++++ +++|++++++|+.++... .+
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~~--------- 144 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--GN--------- 144 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--cc---------
Confidence 88899999 9999999999999999999999986 69998765 589999999999876411 00
Q ss_pred CCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhH
Q 020833 169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248 (321)
Q Consensus 169 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~ 248 (321)
. .+...|+++.++++++||.|++..|+..++ ++...+.+++.+++..+.+.....+.+... ..+...
T Consensus 145 --------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 211 (292)
T PRK11272 145 --------L-SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSG 211 (292)
T ss_pred --------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHH
Confidence 0 122469999999999999999998886544 244567788888888877766544322111 112346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
|..++|.++++++++|.+|++++++.++++++.+.+++|+++++++++++||++|+.+++|+++
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~l 275 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGV 275 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999887
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=250.33 Aligned_cols=266 Identities=18% Similarity=0.167 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI 91 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~ 91 (321)
+.+..+.++++||.+++++|.+++ ++||.++.++|+.++++.+.++. .++ +.+++ .....|++. ..++.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~---~~~---~~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV---ARP---KVPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh---cCC---CCchH---HHHHHHHHHHHHHHH
Confidence 346688899999999999999986 49999999999999887666543 121 11222 234456655 45566
Q ss_pred HHHHhhcc-cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCC
Q 020833 92 FSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (321)
Q Consensus 92 ~~~~al~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 170 (321)
+++.+++| .++++++++.++.|+++.+++++++|||++.+ +++|++++++|+.++.. + +.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~--~-~~---------- 135 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE--D-SL---------- 135 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc--c-cC----------
Confidence 77889998 58899999999999999999999999998765 58999999999988762 1 10
Q ss_pred CcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhccCC---CCccccc
Q 020833 171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGL 245 (321)
Q Consensus 171 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~~~~ 245 (321)
........|+++.++++++||+|++++|+..++.++ ......++...+.+.....+...+++. .++...+
T Consensus 136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (299)
T PRK11453 136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID 210 (299)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence 011122479999999999999999999998765432 234456666666555544444443321 1111122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 246 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 246 ~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
...|..++|+|+++|+++|.+|++++++.++++++.+.+++|+++.++|++++||+++..+++|+++
T Consensus 211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~l 277 (299)
T PRK11453 211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVL 277 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999999887
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=3.6e-32 Score=250.44 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~ 88 (321)
|.++++.++.+.++||++++.+|.++++ +||..+.++|+.++++++.++. ++++.++.+ + +....+.++ ..
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~---~-~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFP---K-RYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccccccccc---H-HHHHHHhHHHHH
Confidence 5677889999999999999999999865 9999999999999999888652 122111111 2 233444444 67
Q ss_pred HHHHHHHhhcc----cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCC
Q 020833 89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (321)
Q Consensus 89 ~~~~~~~al~~----~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 164 (321)
++.+++.|++| .++++++++.++.|+++.+++++++|||++++ |++|++++++|+.++... +++...
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-- 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-- 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence 77777777754 57788899999999999999999999998765 589999999999887621 110000
Q ss_pred CCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 020833 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244 (321)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~ 244 (321)
.+...+..+...|+++.++|+++||+|+++.|+..++. ++.+.. ...+.+.+.+.....+.... +.
T Consensus 145 -------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~--~~- 210 (295)
T PRK11689 145 -------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAM--VF- 210 (295)
T ss_pred -------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccc--cC-
Confidence 00000111224699999999999999999999987765 455432 22333333333333222111 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 245 ~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+...|..++|.++ +++++|.+|++++|+.++++++.+.+++|++++++|++++||+++..+++|+++
T Consensus 211 ~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~l 277 (295)
T PRK11689 211 SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAM 277 (295)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1245778888885 789999999999999999999999999999999999999999999999999998
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=1.8e-31 Score=245.87 Aligned_cols=269 Identities=12% Similarity=0.027 Sum_probs=200.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCCHHHHHHHHHHH
Q 020833 7 SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP---QLTFSILCSFFLLS 83 (321)
Q Consensus 7 ~~~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~g 83 (321)
+.++.|+++.++++.++||.+++++|.. + ++||.++.++|+.++.+++.++...+++++.. ..+++++.. ...+
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVS 79 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHH
Confidence 4477899999999999999999999985 4 59999999999999998887765443211110 112333333 3355
Q ss_pred HHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcC
Q 020833 84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (321)
Q Consensus 84 ~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~ 162 (321)
.++ ..++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|++++... +
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~---~--- 147 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWT---F--- 147 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHH---c---
Confidence 555 888999999999999999999999999999999999999998765 589999999999887521 0
Q ss_pred CCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 020833 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDW 241 (321)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 241 (321)
+.. ..+.++++++||.|+++.|+..++. .+....+.|++.++.....+. .+.+...+
T Consensus 148 ---------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 205 (296)
T PRK15430 148 ---------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHM 205 (296)
T ss_pred ---------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccc
Confidence 001 1467889999999999988865321 123444556665554432221 11111111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 242 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 242 ~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
+..+...+..+.+.|+ .+.++|.+|++++++.+++++|.+.|++|+++.++|++++||+++..+++|+++.
T Consensus 206 ~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI 276 (296)
T PRK15430 206 GQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI 276 (296)
T ss_pred cCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1111122333444555 6889999999999999999999999999999999999999999999999999883
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=9.7e-31 Score=236.06 Aligned_cols=253 Identities=17% Similarity=0.195 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccch
Q 020833 24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP 102 (321)
Q Consensus 24 wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~~a 102 (321)
||.+++.+|.+++++.||.+..++|+..+.+++.++... | .+++++.+....|.++ ..++.++++|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998888776432 2 1344566677788777 8999999999999999
Q ss_pred hhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhh
Q 020833 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (321)
Q Consensus 103 ~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (321)
++++++.++.|+++++++.+++|||++++ +++|+.++++|+.++.. ++ + ..+..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~-~------------------~~~~~ 127 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG-N------------------LSINP 127 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-c------------------ccccH
Confidence 99999999999999999999999998765 58999999999988752 11 0 11236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833 183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 261 (321)
Q Consensus 183 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~ 261 (321)
.|+.+.++++++|+.+.+..|+..++.+ ++...+.+++.++.++..+.....+++. .+ +...|..+++.+++++.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA 203 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence 7999999999999999999999887653 2345556788888888877766543322 11 23457788999999999
Q ss_pred HHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 262 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++.
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li 255 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALI 255 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999873
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=2.8e-30 Score=237.62 Aligned_cols=263 Identities=11% Similarity=0.064 Sum_probs=209.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 88 (321)
++.+++..++++.+.|+.++.++|.+.++ .||.++.++|+.++++++.++.. ++++ +.++|+++.....|++...
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~~~ 83 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSLGG 83 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999875 99999999999999998887642 1221 2356677777788887777
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 168 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~ 168 (321)
.+.+++++++++|++.++++.++.|+++.+++ +||.. +..++.++++|+.++.. .+.+
T Consensus 84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~--------- 141 (293)
T PRK10532 84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD--------- 141 (293)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC---------
Confidence 78899999999999999999999999998775 24321 24567888999988652 1111
Q ss_pred CCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhH
Q 020833 169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248 (321)
Q Consensus 169 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~ 248 (321)
. +.....|+++.++++++||+|++..|+..++. ++... .++.+++++++.+.....++ ...++ ...
T Consensus 142 -------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~ 207 (293)
T PRK10532 142 -------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAG-EALWH---WSI 207 (293)
T ss_pred -------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccC-cccCC---HHH
Confidence 0 11125699999999999999999999988776 45554 56667777777766654332 11111 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
|..++|+|+++|+++|.+|+++++|.+++++|.+.++||+++.++|++++||+++..+++|+++
T Consensus 208 ~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~l 271 (293)
T PRK10532 208 LPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGA 271 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6667899999999999999999999999999999999999999999999999999999999987
No 8
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.96 E-value=1.2e-27 Score=216.04 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC----C-CCCCHH-HHHHHHHHHHH
Q 020833 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE----R-PQLTFS-ILCSFFLLSVF 85 (321)
Q Consensus 12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~-~~~~~~-~~~~~~~~g~~ 85 (321)
|+++.+++++++||.+++++|. .+ ++||.++.++|++++.+++.++...++|++ + ++.+++ .+......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5788999999999999999998 44 499999999999999988877654432211 1 111122 23345667777
Q ss_pred HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCC
Q 020833 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (321)
Q Consensus 86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 165 (321)
...++.++++|++++++++++++.+++|+++++++++++|||++++ +++|++++++|+.++... .
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~---~------ 144 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL---K------ 144 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH---c------
Confidence 7889999999999999999999999999999999999999999765 589999999999887521 0
Q ss_pred CCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 020833 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL 245 (321)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~ 245 (321)
.+.. .+.++++++||.|.+..|+..++ + ........ +.......+..+. .+.+.....++
T Consensus 145 -----------~~~~-----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 204 (256)
T TIGR00688 145 -----------GSLP-----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLLQ-TDFATVQQTNP 204 (256)
T ss_pred -----------CCch-----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHHH-hccCcccccCc
Confidence 0011 35788999999999998886543 2 22222111 1111111111111 11111001112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHH
Q 020833 246 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 297 (321)
Q Consensus 246 ~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~i 297 (321)
..+|..+++.|++ +.++|.+|++++|+.++++++++.|++|+++.+++++.
T Consensus 205 ~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 205 FPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2367888888985 88999999999999999999999999999999999874
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=5.1e-27 Score=216.84 Aligned_cols=259 Identities=14% Similarity=0.132 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 020833 25 VSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL 104 (321)
Q Consensus 25 g~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~ 104 (321)
-.....-|.++++-.+|..+.++|+.++.+.+.+... .+.+++++.+++++++....|+++..++.+.++|++|++++.
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~ 93 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF 93 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3344678999875467999999999998876655421 122223456788999999999999888899999999999999
Q ss_pred HhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHH
Q 020833 105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184 (321)
Q Consensus 105 a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 184 (321)
++++.++.|+++++++++++|||++.+ +++|++++++|+.+.. . .+ .+ ....|
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~--~~-----------------~~-~~~~G 146 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D--TE-----------------LS-FNWAG 146 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C--Cc-----------------cc-ccHHH
Confidence 999999999999999999999998765 5899999999997643 1 11 11 12569
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHhccCCC---Ccccc-chhHHHHHHHHHHH
Q 020833 185 GFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPS---DWKLG-LDIGLVAVLYSAVI 258 (321)
Q Consensus 185 ~~l~l~aa~~~a~~~vl~~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~---~~~~~-~~~~~~~l~~~g~~ 258 (321)
+++.++|+++||+|+++.|+..+ ++ |+.+.+.|++..+.+.+.+.+...|+.+. ++... .......+.+..++
T Consensus 147 ~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (302)
T TIGR00817 147 FLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV 225 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence 99999999999999999999887 55 67889999999999999998876653210 01000 00000011111222
Q ss_pred HHHHHH----HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 259 GTGFRV----GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 259 ~t~~~~----~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+..++ .++++++++.+|++.+.+.+++|++++++|++++||++|..+++|+++
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~l 283 (302)
T TIGR00817 226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGI 283 (302)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHH
Confidence 332233 355579999999999999999999999999999999999999999988
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=1.6e-25 Score=204.80 Aligned_cols=268 Identities=13% Similarity=0.051 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFGCSSQIF 92 (321)
Q Consensus 14 ~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (321)
.+..+.++++|+......|...++ .++ ..+++...+.+++.++...+. ++.++..+++.+......++.+..++.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999964443 344 458888777777777654321 2222222333343444445555888999
Q ss_pred HHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCc
Q 020833 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR 172 (321)
Q Consensus 93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 172 (321)
+++|+++.+++.++.+.++.|+++.+++++++|||++.+ +++|+.+++.|+.++.. ++.
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~---~~~------------ 138 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL---SRF------------ 138 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc---ccc------------
Confidence 999999999999999999999999999999999998765 58999999999988752 110
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHH
Q 020833 173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL 249 (321)
Q Consensus 173 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 249 (321)
.. ....|+.+.++++++|++|++..|+..++.++ ....+.+++..++..........+... +. .....+
T Consensus 139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~ 210 (281)
T TIGR03340 139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQI 210 (281)
T ss_pred ----cc-cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHH
Confidence 01 12357788999999999999988776444321 112233333333222222222112111 11 112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 250 VAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 250 ~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
..+++.+.+++.++|.+|++++++.++++++.+.+++|+++.++|++++||+++..+++|+++.
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~li 274 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCII 274 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 6678889999999999999999999999999999999999999999999999999999999873
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.93 E-value=7.2e-24 Score=199.50 Aligned_cols=272 Identities=15% Similarity=0.150 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHHH
Q 020833 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFGC 87 (321)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~g~ 87 (321)
.+.....+....+-.......|.+++. +| |..+..+|++++.++...+... +.+++++. .+++++..+..|+++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344444444445556667889999875 99 9999999999998765544322 22222333 2446788889999995
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 167 (321)
..+...+.|+++++++.+.++.++.|++++++++++++||++++ +++++++++.|+.+... .+
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~-------- 188 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KE-------- 188 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---cc--------
Confidence 45666779999999999999999999999999999999998765 58999999999988652 11
Q ss_pred CCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHhccCC--C
Q 020833 168 GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--S 239 (321)
Q Consensus 168 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~------~~~~~~~~~~l~~~i~~~~~~l~~~~~~--~ 239 (321)
.+. ...|++++++|+++||+|+++.|+..++.+ ++.....++..++.++++|+....|... .
T Consensus 189 ---------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~ 258 (350)
T PTZ00343 189 ---------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVP 258 (350)
T ss_pred ---------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 112 357999999999999999999999876532 3445556678899999998887665321 1
Q ss_pred Cccc---c-chhHHHHHHHHHHHHHHHHHHHHHH----HhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHh
Q 020833 240 DWKL---G-LDIGLVAVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSD 311 (321)
Q Consensus 240 ~~~~---~-~~~~~~~l~~~g~~~t~~~~~l~~~----~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~ 311 (321)
.+.. . ....+..+++. ++.+++.|.+|+. ++++.+|.+.+...+++|++++++|++++||++|..+++|++
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~ 337 (350)
T PTZ00343 259 VWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMA 337 (350)
T ss_pred HHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHH
Confidence 1100 0 01122344554 5567999999985 999999999999999999999999999999999999999998
Q ss_pred h
Q 020833 312 V 312 (321)
Q Consensus 312 l 312 (321)
+
T Consensus 338 l 338 (350)
T PTZ00343 338 V 338 (350)
T ss_pred H
Confidence 7
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=3e-22 Score=182.32 Aligned_cols=270 Identities=17% Similarity=0.243 Sum_probs=200.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~ 87 (321)
+........++....|+.+....|...+...++....+.|+..+.++..+.... ++..+.+.+ +++....+.+.++ .
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPAL-RPWLLLLLLALLGLA 81 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccccc-cchHHHHHHHHHHHH
Confidence 345567777888899999999999986544677777788999988884444221 111111111 1233445555555 8
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHH-HHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~-l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 166 (321)
.++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.++.++++|+.++... +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~---~~------ 146 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLG---GG------ 146 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecC---CC------
Confidence 8999999999999999999999999999999997 6679998765 589999999999887621 10
Q ss_pred CCCCCcccCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHhccCCCCcccc
Q 020833 167 SGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLG 244 (321)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~l~~~~~~~~~~~~ 244 (321)
.+.. ...|+.+.++++++||++.+..|+.. +. ++..... +++... ............. . ..
T Consensus 147 ----------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~ 209 (292)
T COG0697 147 ----------GGGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLA--LLLLLLFFLSGFG--A-PI 209 (292)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHH--HHHHHHHHhcccc--c-cC
Confidence 0111 46899999999999999999999877 43 3444444 444412 2222122111111 1 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 245 ~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
....+..+.+.|++++.++|.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l 277 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL 277 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23457788999999999999999999999999999999999999999999999999999999999876
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.87 E-value=1.5e-19 Score=167.19 Aligned_cols=269 Identities=16% Similarity=0.179 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020833 23 AQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS 100 (321)
Q Consensus 23 ~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~ 100 (321)
+-.++...+....+.+.+ |..-.++-+..-.++..+...+++++ +..+..++++.++++++++....+++...|++||
T Consensus 24 ~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT 103 (334)
T PF06027_consen 24 CITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYT 103 (334)
T ss_pred HHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455555554454544 43333444344344444443332221 2222234567778889999988889999999999
Q ss_pred chhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcch
Q 020833 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180 (321)
Q Consensus 101 ~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (321)
+.+.+.++..+.-+++++++++++|||.++. |++|+++++.|+.++...+ .... .+...+.+
T Consensus 104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD--~~~~----------~~~~~~~~ 165 (334)
T PF06027_consen 104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSD--VLSG----------SDSSSGSN 165 (334)
T ss_pred cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeec--cccc----------ccCCCCCc
Confidence 9999999999999999999999999998764 6899999999998876431 1110 01123345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CCccccchhHHHHHHHHHHHH
Q 020833 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAVLYSAVIG 259 (321)
Q Consensus 181 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~g~~~ 259 (321)
...||+++++||+.||+++++.++..|+. +......+..++|.+++.+.....|... ...++.+ ..+..++ ...++
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~~~v-~~~~~ 242 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIGLLV-GYALC 242 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHHHHH-HHHHH
Confidence 58999999999999999999999999987 4667778888899998888877776532 2222222 1222222 22225
Q ss_pred HHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 260 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 260 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
...-|.+....++..+|+...+-.....+++++++++++||++++..++|.++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~l 295 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFAL 295 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHH
Confidence 56667788889999999999998889999999999999999999999999887
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=159.97 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=207.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER---PQLTFSILCSFFLLSVFG 86 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~g 86 (321)
..++++..+.+.++||......|.. + +.|+.++..+|..-+..++..+....++.+. ...+.|.+....+.+.+-
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4688999999999999999999985 5 4999999999999999988876555433221 122344556666677777
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 166 (321)
..++..|.||.+.-..-++|.=.+..|++.++++.+++|||+++ .|++++.++.+||.......|
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g--------- 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG--------- 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC---------
Confidence 89999999999999999999999999999999999999999864 579999999999988763211
Q ss_pred CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccch
Q 020833 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD 246 (321)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~ 246 (321)
+.++ ..+.=|++|+.|..+-| ..+- |+.+-....++.-...++...+..++++.......+
T Consensus 148 -----------~lpw-----val~la~sf~~Ygl~RK-~~~v--~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~ 208 (293)
T COG2962 148 -----------SLPW-----VALALALSFGLYGLLRK-KLKV--DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN 208 (293)
T ss_pred -----------CCcH-----HHHHHHHHHHHHHHHHH-hcCC--chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence 2222 45677889999997633 2332 455666677776666666666655544320111223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 247 IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 247 ~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
..+..++..|. .|+++..++..+.|+++-+..+..+|++|..-.+++++++||+++..+.+.-++
T Consensus 209 ~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~ 273 (293)
T COG2962 209 SLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAF 273 (293)
T ss_pred hHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45666777787 689999999999999999999999999999999999999999999999988776
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.85 E-value=3.3e-19 Score=163.80 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (321)
+++..++++++||++++..|.. . +.++.++. |..++.+++..+....+ +.+ +..++.+..-++.|++-...+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHHHHhhhhh
Confidence 3677889999999999999985 3 68888886 88888887776554432 211 11233333334444444667799
Q ss_pred HHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCC
Q 020833 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (321)
Q Consensus 93 ~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 171 (321)
++.+.++++.+.+..+.+ +.|++..+.+.+++|||.+.+++ ..-++|+++.++|+.++...++.+.
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------- 142 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------- 142 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence 999999999999999988 88889999999999999876531 2238899999999888652211000
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHhccCCCCccccchhH
Q 020833 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNTILSTAFALIVVSEPSDWKLGLDIG 248 (321)
Q Consensus 172 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l---~~~i~~~~~~l~~~~~~~~~~~~~~~~ 248 (321)
++....+...|+.+.++|+++|+.|.+..|.. ++ ||.+.++++.. +++++..... .+.. +++ ....
T Consensus 143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~ 211 (290)
T TIGR00776 143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAI 211 (290)
T ss_pred --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHH
Confidence 00000234679999999999999999998865 34 56766544443 3333222211 1111 121 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhh----HHHhh
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI----LCSDV 312 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~-~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~----iG~~l 312 (321)
+..++ .|++ +.+++.+|..+.+ +.++++.+.+.+.+|+.+.+++++++||+.+..++ +|+++
T Consensus 212 ~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~l 278 (290)
T TIGR00776 212 LLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIIL 278 (290)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHH
Confidence 44445 8887 7999999999999 99999999999999999999999999999999999 99887
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.85 E-value=5.5e-19 Score=152.98 Aligned_cols=260 Identities=13% Similarity=0.094 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (321)
|++++..+...--....++|...+. ..|.-.+.+|..++.++++.+. |..+.+.+++++......|+.-..-|.+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~ 87 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL 87 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence 6777777776555567788887765 9999999999999999998763 2223456777888888888876566789
Q ss_pred HHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCc
Q 020833 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR 172 (321)
Q Consensus 93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 172 (321)
+|.+++.+|.+.+..+-++-|+..+.++. .|. ...+-+.+++.|+.++.-. +.
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~--------~d~vwvaLAvlGi~lL~p~-~~-------------- 140 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RRL--------RDFVWVALAVLGIWLLLPL-GQ-------------- 140 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHhc----cch--------hhHHHHHHHHHHHHhheec-cC--------------
Confidence 99999999999999999999988776542 221 2356678888998887511 11
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHH
Q 020833 173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV 252 (321)
Q Consensus 173 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l 252 (321)
+.+.....|..+.+.++.+|+.|.+..+|..+.. +..+-+...+.+++++..|+...... +.-++ +.....-
T Consensus 141 ---~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~---p~ll~la 212 (292)
T COG5006 141 ---SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG-PALFS---PSLLPLA 212 (292)
T ss_pred ---CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc-hhhcC---hHHHHHH
Confidence 1122336899999999999999999998887654 34455688999999988888764322 11111 1223445
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+-.+++++.+.|.+=..++++.++.+.+..+.+||.++.+.|++++||++|..|++|++.
T Consensus 213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ 272 (292)
T COG5006 213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAA 272 (292)
T ss_pred HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999887
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.79 E-value=2.4e-20 Score=162.37 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=201.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 88 (321)
+..++.+.+.++ ..+.+..+++|..+ +.+|.+....|+..--++-.+...+.+..-..+...| +.++++|+.|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~t 109 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFT 109 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhh
Confidence 344555655566 55555555555544 3799999999966655555554333221111111222 346789999977
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG 168 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~ 168 (321)
.....||+++|.+.++|+++.++.|++|+++++.++|||.+. .+.+|..+.+.|+++++ ++|.+ ++
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFl-FG----- 175 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFL-FG----- 175 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcc-cC-----
Confidence 788999999999999999999999999999999999999864 46899999999999987 34433 11
Q ss_pred CCCcc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchh
Q 020833 169 SPRRL-LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247 (321)
Q Consensus 169 ~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~ 247 (321)
+++.+ ++++-.....|...++.+++.-|.-.++.|++.|+. |....+.|..+++.+..++.....+ .-+++.. ..
T Consensus 176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig--~~~lP~c-gk 251 (346)
T KOG4510|consen 176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG--AVQLPHC-GK 251 (346)
T ss_pred CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc--ceecCcc-cc
Confidence 11111 112212235678888999988888888889888886 4444556777777777766554332 1123222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 248 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 248 ~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+|..++.+|++ +.+++.+.+.++++-.|..++...+.+.++|.++.++++||.||+..++|++.
T Consensus 252 dr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~ 315 (346)
T KOG4510|consen 252 DRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM 315 (346)
T ss_pred ceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence 46666778884 57889999999998888899999999999999999999999999999999877
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.65 E-value=1.7e-13 Score=126.79 Aligned_cols=251 Identities=15% Similarity=0.163 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHH
Q 020833 41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120 (321)
Q Consensus 41 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~ 120 (321)
|..+++..+....++-.+.....++++ .+++.+..+...+++......+-+.+++|+|...-.++-.+-|+.+++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~ 108 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILG 108 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence 888999998888876665544322122 22333455677888888888999999999999988888899999999999
Q ss_pred HHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHH
Q 020833 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI 200 (321)
Q Consensus 121 ~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v 200 (321)
.+++++|.+.+ |+.++++-.+|+.+....+..+.+ +......+...|+++.+++.++.+...+
T Consensus 109 ~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~ 171 (303)
T PF08449_consen 109 VLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTGV 171 (303)
T ss_pred HHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHHH
Confidence 99998887654 689999999999887643221100 0011112223499999999999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHH--hccCCCCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 020833 201 LQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWKL--GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG 275 (321)
Q Consensus 201 l~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~--~~~~~~~~~~--~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~ 275 (321)
.+++..++++ ++...+++..+++.+...+.... .++....++. ..+..+..++..++ ++.++.....+..++.|
T Consensus 172 ~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~ 250 (303)
T PF08449_consen 172 YQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFS 250 (303)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 9999987765 56788899999998888877776 3221111111 11223444444454 55677777778899999
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 276 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 276 a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
|...+.+..+.-+++++++++++|+++++.+++|.++
T Consensus 251 al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~l 287 (303)
T PF08449_consen 251 ALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVL 287 (303)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHH
Confidence 9999999999999999999999999999999999988
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.60 E-value=1.7e-14 Score=131.57 Aligned_cols=207 Identities=22% Similarity=0.255 Sum_probs=161.5
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 166 (321)
+..++.+..|+.+++.+...++..+.-+||..++.++..||+++. |.+++.+++.|++++...+..
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~-------- 235 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK-------- 235 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc--------
Confidence 778888999999999999999999999999999999999999865 689999999999888643211
Q ss_pred CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcc
Q 020833 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVS-EPSDWK 242 (321)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~l~~~~-~~~~~~ 242 (321)
|+++........|+++++++|+.||+|+++.|+...+.+ |......+..++..+++.|...+.+. ....++
T Consensus 236 -----~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~ 310 (416)
T KOG2765|consen 236 -----QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE 310 (416)
T ss_pred -----ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 111222334479999999999999999999998776542 32233344555666666655544322 112333
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 243 ~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+.......++..++++|+++=++|.++.-..++..+.+=+.++.+.+++.+.++=|.++++..++|.+.
T Consensus 311 lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~ 380 (416)
T KOG2765|consen 311 LPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIP 380 (416)
T ss_pred CCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4333334556778899999999999999999999999999999999999999999999999999999876
No 20
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.49 E-value=1.4e-13 Score=109.52 Aligned_cols=124 Identities=18% Similarity=0.334 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 020833 22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (321)
Q Consensus 22 ~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~ 100 (321)
++||...++.|...++ .||....++|+..+++ ++++....++++....+.+++......+.++ ...+.++++|++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999998765 9999999999999997 5555444444333455667777788888886 89999999999999
Q ss_pred chhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 101 ~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
++++++.+.++.|+++.++++++++||++++ +++|+++.+.|+.++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765 5899999999987753
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.43 E-value=1.2e-12 Score=102.45 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHHHHH
Q 020833 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQ 90 (321)
Q Consensus 12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~~~~ 90 (321)
...++.+++++.||...++.|..+| ++||..-+..|-.....++..+....++.+.+ ..+.|.|.+.++-|+.+..++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 3567889999999999999999986 59999999999999998888877665443322 245677888888998889999
Q ss_pred HHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+||.|++...++..+=+-.+.|++++++++++++||++.++ |+|+.+-.+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999998874 799999999987764
No 22
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.34 E-value=5.2e-12 Score=100.39 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020833 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS 272 (321)
Q Consensus 193 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~ 272 (321)
++||.+.+..|+..++. |+...+.+++..+++ ..+.....+... ....+...+...++.+.+++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 46899999999999986 588999999999987 666666554322 11112345677788899889999999999999
Q ss_pred ccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 273 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 273 ~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+.++++++.+.+++|+++.+++++++||+++..+++|+++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l 116 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIIL 116 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.30 E-value=8.2e-10 Score=98.82 Aligned_cols=227 Identities=15% Similarity=0.189 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 72 ~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
++|+..+..+-+++..+.+.+.+.++++.+++.=.++.++-.++|++++.+++|+|++.+ ||+++.+-++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456677777888899889999999999999999999999999999999999999998765 58999999999988
Q ss_pred hhhcCCCCCcCCCCCCCCCC-c-ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q 020833 152 VTFYKGPPLIGELSHSGSPR-R-LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILST 228 (321)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~ 228 (321)
+-..+... . +++++ . +.+....+...|.++.++++++-++..++.+|..|+.+ +.+.-+....+.|.++.+
T Consensus 87 v~~~~~~~--~----~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~ 160 (244)
T PF04142_consen 87 VQLSSSQS--S----DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL 160 (244)
T ss_pred eecCCccc--c----ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 64321110 0 00000 0 00112334578999999999999999999999988864 334455556666666665
Q ss_pred HHHHHhccCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhh
Q 020833 229 AFALIVVSEP-SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI 307 (321)
Q Consensus 229 ~~~l~~~~~~-~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~ 307 (321)
+.....+.+. .+-. ....+-...+.-++.+.++=.+....+|+.|...=+.-..+..+.+.+.+++++|.++|...+
T Consensus 161 ~~~~~~~~~~~~~~g--~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~ 238 (244)
T PF04142_consen 161 LALLLSDGSAISESG--FFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFL 238 (244)
T ss_pred HHHhcccccccccCC--chhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Confidence 5544332211 1100 001111112222333444434455677888888777788889999999999999999999999
Q ss_pred HHHhh
Q 020833 308 LCSDV 312 (321)
Q Consensus 308 iG~~l 312 (321)
+|+++
T Consensus 239 lg~~~ 243 (244)
T PF04142_consen 239 LGAAL 243 (244)
T ss_pred hheec
Confidence 99764
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.29 E-value=5e-11 Score=93.39 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 264 (321)
Q Consensus 185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~ 264 (321)
..+++++|+++++..+..|--.++. ||..-+....++..+.+.......+..... .......|..++..|+ .++.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGl-a~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGL-AGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHH-HHHHHH
Confidence 5688999999999999988777876 576777888888877777776665432111 1123456888888896 889999
Q ss_pred HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 265 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 265 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
.+|++++|+-+++++.++.-+.|+++++++++++||++|..+++|+.++
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI 130 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLI 130 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985
No 25
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.26 E-value=7.6e-11 Score=108.25 Aligned_cols=256 Identities=15% Similarity=0.138 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 020833 25 VSNMEVIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSP 102 (321)
Q Consensus 25 g~~~~~~K~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a 102 (321)
.......|..++ +---|..+...+...+.+.+........++..+..+...+...+.+|++.++..++-..++.+.+.
T Consensus 30 v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V 109 (316)
T KOG1441|consen 30 VGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV 109 (316)
T ss_pred eeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence 334455677776 323477788888777777666543332222111123345667788899988889999999999999
Q ss_pred hhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhh
Q 020833 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (321)
Q Consensus 103 ~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (321)
+..-.+-+++|.++.+++.++.+|+.+++. ++.++.-..|+.+-.. .| .+ ...
T Consensus 110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~---~e-----------------~~-fn~ 162 (316)
T KOG1441|consen 110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV---TE-----------------LS-FNL 162 (316)
T ss_pred hHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee---cc-----------------cc-ccH
Confidence 999999999999999999999999998765 4667777777766431 11 11 237
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhh-hHHHHHHHHHHHHHHHHH-HHHHHhccCCC------CccccchhHHHHH
Q 020833 183 LGGFFLAAEAFMNSAWFILQALILR--KFA-AVLIIMFYLFFFNTILST-AFALIVVSEPS------DWKLGLDIGLVAV 252 (321)
Q Consensus 183 ~G~~l~l~aa~~~a~~~vl~~~~~~--~~~-~~~~~~~~~~l~~~i~~~-~~~l~~~~~~~------~~~~~~~~~~~~l 252 (321)
.|.+.++.+.+..+..+++.++..+ +.. |++....++.-++.+.++ |.....|+... .|+. ....+
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~ 238 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLIL 238 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHH
Confidence 8999999999999999999999884 222 678888888888888888 66555444221 2221 22223
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
++.. ++...-....++.+.+.+|.+-++.+.+--++.+..|+++++|++|+.+..|..+
T Consensus 239 ~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~i 297 (316)
T KOG1441|consen 239 LLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAI 297 (316)
T ss_pred HHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHH
Confidence 3333 2223333445778899999999999999999999999999999999999999988
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.18 E-value=7.2e-10 Score=99.80 Aligned_cols=132 Identities=12% Similarity=0.111 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 86 (321)
.+.++....+++++.|+......|...+ +.+| .....+|+.++.+++.+.....+++ ...+.+++......++++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 4567899999999999999999999865 3664 4555578999999888876543322 223556666677788887
Q ss_pred -HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchh
Q 020833 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (321)
Q Consensus 87 -~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv 149 (321)
...+.++++++++.+++.++.+.++.|++++++++++++||++.+ +++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999998765 589999988885
No 27
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.10 E-value=2.7e-10 Score=89.93 Aligned_cols=101 Identities=22% Similarity=0.349 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHH
Q 020833 46 VYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122 (321)
Q Consensus 46 ~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l 122 (321)
.+|+..+.+++..+...++|.+. +..+.|++...+..|+++ ..++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999988887665332211 122334455666778888 589999999999999 58889999999999999999
Q ss_pred HhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 123 ~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
++|||++.+ ++.+++++++|++++.
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIA 105 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHh
Confidence 999999765 5899999999999886
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.08 E-value=3.4e-07 Score=84.11 Aligned_cols=280 Identities=13% Similarity=0.122 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhh---cCC-CCC------CHHHHHH
Q 020833 12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHR---SER-PQL------TFSILCS 78 (321)
Q Consensus 12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~---~~~-~~~------~~~~~~~ 78 (321)
.-++.++....-++...+..|.+-..+ ..|...++.-=.+-.++.....+...| ++. ..+ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 556778888889999999999975444 556666655544444443333332211 111 111 2233444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (321)
Q Consensus 79 ~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 158 (321)
..+-+++.++.+-+.+.++.+.+++.-.+..++--+-|+++..+++++|++++ ||.++++-++|+.++-...++
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 55566777788889999999999999999999999999999999999998765 589999999999887421111
Q ss_pred CCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020833 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE 237 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~ 237 (321)
. - ++..+....+...|....+.+++.-++-.++.+|..|+.. +.+.-+.-...+|.+..+...+..+..
T Consensus 169 ~---~-------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~ 238 (345)
T KOG2234|consen 169 P---T-------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGE 238 (345)
T ss_pred C---C-------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 0 0 0111222345589999999999999999999999998754 233334334445655555544444332
Q ss_pred CCCcc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 238 PSDWK----LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 238 ~~~~~----~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
...|. .-+...|..++..+ ++=.+-..-+|+.|-..=+....+..+++.+.++.++|-++|+...+|..+
T Consensus 239 ~i~~~gff~G~s~~vw~vVl~~a-----~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~l 312 (345)
T KOG2234|consen 239 AINEYGFFYGYSSIVWLVVLLNA-----VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALL 312 (345)
T ss_pred ccccCCccccccHHHHHHHHHHh-----ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 21121 11112243333333 333344455677776665666677889999999999999999999999887
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=9.1e-08 Score=86.69 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=193.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYV-IIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~-~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 86 (321)
+..++....+.-.+.-..+.+.-|.++.. +.|... +..++.+..++.+...-.. +=-+.++.+++..+.++...++-
T Consensus 9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 9 KQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH
Confidence 34455666666666777778888988766 333322 3347777766665544221 11123457788888888888888
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 166 (321)
....+.-..+++|.+...-.++-...|+++++....+++.|.+++ -+.++...++|...... ++.
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~d~------ 152 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---TDL------ 152 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---ccc------
Confidence 777778889999999999999999999999998888877555444 46788888788755431 111
Q ss_pred CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCC------C
Q 020833 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP------S 239 (321)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~------~ 239 (321)
.. ...|..+.+...++-+.+.+..|+..+..+ +...+++|..+.....+.+...++++.. +
T Consensus 153 -----------sf-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~ 220 (314)
T KOG1444|consen 153 -----------SF-NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFD 220 (314)
T ss_pred -----------ee-cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcc
Confidence 11 134889999999999999999888665532 3355678888999888888887775411 1
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 240 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 240 ~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+|. ....+..+...|+++-++.|. -.++.+..++++.+.+....-....+-+.+..|++.++..++|..+
T Consensus 221 ~~~--~~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~ 290 (314)
T KOG1444|consen 221 NWS--DSSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLV 290 (314)
T ss_pred ccc--chhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHH
Confidence 121 122366777778766655554 4578888899888888876777788888888899999999999888
No 30
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.89 E-value=2.1e-09 Score=93.96 Aligned_cols=263 Identities=17% Similarity=0.185 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020833 17 MVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFV 95 (321)
Q Consensus 17 l~~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~ 95 (321)
.+++..+=+.++.-+-++ +.+++ |..-.|+-..+-+++-.+...+ +|+ ..+.+ |..++++++...-.+++...
T Consensus 24 QiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~f-R~~-~~~~~---~~hYilla~~DVEaNy~vV~ 97 (336)
T KOG2766|consen 24 QILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLF-RRK-YIKAK---WRHYILLAFVDVEANYFVVK 97 (336)
T ss_pred HHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHh-hhH-HHHHH---HHHhhheeEEeecccEEEee
Confidence 344444445555555554 34443 5556666666666676776654 332 11222 44478888888555667888
Q ss_pred hhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccC
Q 020833 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL 175 (321)
Q Consensus 96 al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~ 175 (321)
|.||++.+...++-.-.-..+.+++|+++|.|-.+ .|+.|+++|+.|++++++.+ .. .+ +.
T Consensus 98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sD---V~-----ag-----d~ 158 (336)
T KOG2766|consen 98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSD---VH-----AG-----DR 158 (336)
T ss_pred ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEee---ec-----cc-----cc
Confidence 99999999888886644445567899998888644 46899999999999987531 11 10 12
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccccchhHHHHHHH
Q 020833 176 SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLY 254 (321)
Q Consensus 176 ~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 254 (321)
.++.+-..|+.+.+++|-+||+.++....+.|+. |....+....++|+++..+- +.++.. .. +..+++.. ..|
T Consensus 159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~--tl~w~~~i--~~y 232 (336)
T KOG2766|consen 159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVS--TLHWDSAI--FLY 232 (336)
T ss_pred cCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhcccee--eEeehHHH--HHH
Confidence 3345557899999999999999999999888987 56777788888999988877 444432 22 12222222 223
Q ss_pred HH-HHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 255 SA-VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 255 ~g-~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
++ ..+...-|.+.-..+|..+++...+-....-.++.++ ..+|-+.+|.-.+..+.
T Consensus 233 l~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~ 289 (336)
T KOG2766|consen 233 LRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFAT 289 (336)
T ss_pred HHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHH
Confidence 33 2233334555566678888888887777888888888 77777899888777665
No 31
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=5.2e-08 Score=84.35 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (321)
Q Consensus 79 ~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 158 (321)
+..++.-.-..++.-+.|++|.|=-...+=-+.-|+=+++++.++.+++-.|+ +...++...+|+.+.. .++.
T Consensus 88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~ 160 (337)
T KOG1580|consen 88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKEN 160 (337)
T ss_pred HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccc
Confidence 34444444566778888999998766555566778888889999887777654 5889999999998876 4432
Q ss_pred CCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020833 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE 237 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~ 237 (321)
... ...+.++..|+++.++|--.=......+.+..+.+. ....++++..+.+++.+..-.++++..
T Consensus 161 Kv~-------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGEl 227 (337)
T KOG1580|consen 161 KVG-------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGEL 227 (337)
T ss_pred ccC-------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhH
Confidence 211 112344578999999999888888889998877753 234567777777777766655555321
Q ss_pred --CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 238 --PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 238 --~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
...+...-+..|.-+..+++ ++++++.+........||-+-|.+....-.|+++.++++++++++.+|++|.++
T Consensus 228 weF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvl 303 (337)
T KOG1580|consen 228 WEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVL 303 (337)
T ss_pred HHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 00011000122444555666 789999999999999999999999999999999999999999999999999988
No 32
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.83 E-value=9.7e-08 Score=87.86 Aligned_cols=136 Identities=15% Similarity=0.028 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~ 88 (321)
+..+.+..+.+++.|+......|.. .. -++.....+++.++++++.++............+.+.+......++++ ..
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999985 33 345667788999998888776543222111112456677777788887 78
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+.+|++++++.++++++.+.++.|++++++++++++|+++.. +++|..+.+.|+.++.
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998764 6899999999997764
No 33
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.80 E-value=1.5e-06 Score=78.23 Aligned_cols=281 Identities=19% Similarity=0.208 Sum_probs=167.3
Q ss_pred chhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCHHH-HH
Q 020833 4 DMGSMRAALPSVGMVIVLL--AQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQLTFSI-LC 77 (321)
Q Consensus 4 ~~~~~~~~~~~l~l~~~~~--~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~---~~~~~~~~-~~ 77 (321)
|.++..+....+++++.-- --|..+...+.-.+-+. |...+.+..+.=.++-...-..++++. +-..+|++ ++
T Consensus 7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~f-PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr 85 (349)
T KOG1443|consen 7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHF-PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLR 85 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCC-chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHH
Confidence 5555555555555554322 23556666666433333 555555554443333222222222221 12355665 44
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhh--chhhhhhhc
Q 020833 78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASI--GGAFVVTFY 155 (321)
Q Consensus 78 ~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~--~Gv~ll~~~ 155 (321)
+...+|+..+..-.+-+++++|++.+.=+..-.+.++|+.+++.++.-||+++. +...+.+ +|+.+.+ .
T Consensus 86 ~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~--------L~l~v~lI~~Glflft-~ 156 (349)
T KOG1443|consen 86 RLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA--------LVLIVLLIAVGLFLFT-Y 156 (349)
T ss_pred HhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHhhheeEEE-e
Confidence 566778877777778889999999988777778999999999999999998763 3444444 4444433 2
Q ss_pred CCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHH
Q 020833 156 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFA 231 (321)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~ 231 (321)
|. .+. ...|..+.+.|+++-++-=...++..++.+ +|.+......-...+.+++..
T Consensus 157 Ks-------------------Tqf-~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~ 216 (349)
T KOG1443|consen 157 KS-------------------TQF-NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLS 216 (349)
T ss_pred cc-------------------cce-eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHH
Confidence 22 112 245666666665554444444444444432 556555554444555566666
Q ss_pred HHhccCC-C----Cccc-cchhHHHHHHHHHHHHHHHHHHHH---HHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCcc
Q 020833 232 LIVVSEP-S----DWKL-GLDIGLVAVLYSAVIGTGFRVGLC---TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302 (321)
Q Consensus 232 l~~~~~~-~----~~~~-~~~~~~~~l~~~g~~~t~~~~~l~---~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~ 302 (321)
+.+|+.. . .|.. .....+..+.++++ ++..++.+- .....+.+..+.|...-.--+-..++|..+.+|++
T Consensus 217 l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~l 295 (349)
T KOG1443|consen 217 LLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQL 295 (349)
T ss_pred HHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcch
Confidence 6676632 1 1211 11112333444444 445555442 33457778888888888888999999999999999
Q ss_pred chhhhHHHhhhcc
Q 020833 303 CLGRILCSDVGKV 315 (321)
Q Consensus 303 t~~~~iG~~l~~~ 315 (321)
+...++|..+..+
T Consensus 296 s~lN~~Gl~i~~a 308 (349)
T KOG1443|consen 296 SLLNWLGLAICLA 308 (349)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999988444
No 34
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.78 E-value=1.1e-07 Score=87.69 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--cccchhHHHHHHHHHHH
Q 020833 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDW--KLGLDIGLVAVLYSAVI 258 (321)
Q Consensus 181 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~g~~ 258 (321)
...|.++.+++++.|+...+..|.. .+. +|..+.++++.++.+.+.+......+.. +. .......+. ....+.+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQWS-YLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHcCHHHHH-HHHHHHH
Confidence 3679999999999999999998754 555 5889999999999887766554332111 00 000112222 2335566
Q ss_pred HHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 259 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 259 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+....+.++++++++.++..++...++.|++..++++++++|+++..+++|.++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l 135 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVIL 135 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 777889999999999999999999999999999999999999999999999887
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.78 E-value=1.4e-07 Score=86.28 Aligned_cols=123 Identities=10% Similarity=0.101 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 264 (321)
Q Consensus 185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~ 264 (321)
..+.+.++++||...+..|+..++. ++. ..+....+.++..++...... ...|+......|. ....+..+....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PDF--LWWALLAHSVLLTPYGLWYLA-QVGWSRLPATFWL-LLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hHH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCcchhhHH-HHHHHHHHHHHHH
Confidence 3577999999999999999877763 333 355556666666665543211 1123322222233 3334444777888
Q ss_pred HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 265 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 265 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.++++++++.++..++++.+..|+++.+++++++||+++..+++|.++
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~ 125 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILI 125 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887
No 36
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.76 E-value=2.3e-07 Score=85.45 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~ 88 (321)
...+.+..+.+++.|+...+..|...+ +.+|...... ..++++++.++...... ....+...+...+..|+++ .+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999754 5788776544 45566666666543221 1123344454456788887 78
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+.++++++++.+++.++.+.++.|+++.++++++++|+++.. +++|..+.+.|+....
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998764 6899999999987765
No 37
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.75 E-value=2.7e-07 Score=76.25 Aligned_cols=128 Identities=15% Similarity=0.148 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcc--cc------chhH
Q 020833 184 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWK--LG------LDIG 248 (321)
Q Consensus 184 G~~l~l~aa~~~a~~~vl~~~~~~~------~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~--~~------~~~~ 248 (321)
|.++.+.|.++.|++.++.|+..++ ..++..+..+....+.+.+.+.+++.|... .... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5678999999999999999998766 237888889999999999999988876532 1110 10 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+..++..|+ ..........+.+++.+|...+....+-.+...+.|++++||++|..+++|.++
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l 143 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVL 143 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Confidence 444444555 334555566788999999999999999999999999999999999999999987
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.71 E-value=2.1e-07 Score=83.79 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC---CCcccc-chhHHHHHHHHHHH
Q 020833 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI 258 (321)
Q Consensus 183 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~~~-~~~~~~~l~~~g~~ 258 (321)
.|..+.++++++|+...+..|. ..+. +|.++.++.++++.+.+.+......+.. ..++.. ....+......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3788999999999999999887 4455 6899999999999887766554432100 011111 11123334455553
Q ss_pred HHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 259 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 259 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
....+.++++++++.++..++.+.++.|++..+++++++||+++..+++|.++
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~ 132 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVII 132 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999876
No 39
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.6e-06 Score=76.69 Aligned_cols=248 Identities=14% Similarity=0.156 Sum_probs=164.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhh--hhhHHHHH
Q 020833 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML--NLIPAFTF 117 (321)
Q Consensus 40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~--~~~Pv~~~ 117 (321)
+|..+.+..-+.+.+.=... +..+++. ....+.|..+...++.......+-+.|++|++=-.-.+-- -+.|+ +
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~--l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--m 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAM--LKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV--M 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHH--Hhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH--H
Confidence 35667777766665544332 2223322 2233345566777888888888999999998533222221 36675 5
Q ss_pred HHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHH
Q 020833 118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA 197 (321)
Q Consensus 118 ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 197 (321)
++..++.+.|.+.+ +.+...+--.|+.+....+..+ +. +.....+...|..++...-.+=++
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-----------~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-----------SKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-----------cccCCCCchHhHHHHHHHHHHHhh
Confidence 66778877777654 4566666668887665432111 00 012223457899998888888888
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC--CCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020833 198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE--PSDW-KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR 273 (321)
Q Consensus 198 ~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~--~~~~-~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~ 273 (321)
.+..|+++.+++. ++..++++..+++++......+..+.. +-++ +..+ +.+.-++..+. ++.+++.+.++-+++
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp-~~~~Di~l~s~-~gavGQ~FI~~TI~~ 264 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHP-DVAFDILLYST-CGAVGQLFIFYTIER 264 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcCh-hHHHHHHHHHH-hhhhhhheehhhHhh
Confidence 8889999888754 667888888888887766553222211 1111 1122 22344555566 567888888899999
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 274 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 274 ~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.|+-.-..++...=.+++.++.+.+|.+++..|++|..+
T Consensus 265 FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~i 303 (327)
T KOG1581|consen 265 FGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLI 303 (327)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeee
Confidence 999999999999999999999999999999999998776
No 40
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.66 E-value=5.2e-07 Score=83.13 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 020833 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (321)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 90 (321)
..+.++.+.++++|+...+..|... .+.+|..... ..+.+.+.+..... .......+.+.+......++...+.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLS-PQPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHh-cCccccCCHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999964 4577765432 33334443332222 21111244556666666665447789
Q ss_pred HHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+|++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999998764 6899999999987754
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.63 E-value=1.1e-06 Score=83.11 Aligned_cols=135 Identities=10% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHH
Q 020833 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFG 86 (321)
Q Consensus 12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~g 86 (321)
.+...++.+++.|+...+..|...+. .+| ....++...++.+.+.+......+... ...+.. ....+..++..
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t 266 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHH
Confidence 36678889999999999999987654 655 466777777776665544443222111 111112 11222334434
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
.+.+.+|++++++.+++.++...++.|++++++++++++|+++.. +++|.++.+.|+.+...
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999999999765 58999999999988764
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.50 E-value=7.2e-07 Score=82.37 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CHHHHHH-
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS- 78 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~~~~~~~- 78 (321)
+..+.+..+++++.|+...+..|...+. +.||..+..+-...+.+++.|+............ .......
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4568899999999999999999997541 5899999999999999988888654321110000 0001111
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 79 ~~~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+..+... ...+.+++.+++++++..+++.....|++++++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence 11222222 334467778999999999999999999999999999999999875 5899999999997765
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.46 E-value=5.6e-06 Score=68.29 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----C-------CHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ----L-------TFSI 75 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~----~-------~~~~ 75 (321)
+++..+.+.+..+...+..|..++. +.+|.++..+-...+.+++.+......+.+..+ . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 3567888899999999999998777 689999999999999999998877654332100 0 1133
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 76 ~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
+...+..|++++..+.+.+..++++++...+++...-.+.+.++++++++|+++.+ +++|+.++++|.++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 44455567777888999999999999999999999999999999999999998765 58999999999865
No 44
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.46 E-value=6.5e-06 Score=75.98 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCHHHHHHHHHH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLL 82 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 82 (321)
+..+.+..+.+++.|+...+..|...+.+-+ .....++-...+.+.+........+.. ....+.+.+...+..
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 3468899999999999999999986433212 223334444444333332222221111 112345667777778
Q ss_pred HHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 83 g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
|+++ ...+.++++++++.++++++.+..+.|++..++++++++|+++.. +++|..+.++|+.+..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 8888 788899999999999999999999999999999999999998764 5899999999987654
No 45
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.45 E-value=1.7e-05 Score=70.73 Aligned_cols=212 Identities=14% Similarity=0.102 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCc
Q 020833 82 LSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI 161 (321)
Q Consensus 82 ~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~ 161 (321)
-+++......+.+.|+.+++++.=.-+-...-+|+.+++.-+++.+++.+ ||+|+....+|++++... ++.
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~---d~~ 162 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL---DVH 162 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee---ecc
Confidence 45666666778889999999987777777888999999999988888655 589999999998887532 111
Q ss_pred CCCCCCCCCCcccCCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 020833 162 GELSHSGSPRRLLLSP--QLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS-- 236 (321)
Q Consensus 162 ~~~~~~~~~~~~~~~~--~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~-- 236 (321)
.. ..+. -.+...|+++.+.+=+.-|...++-+|..+++. +|.....|+.++|.+.+..++.....
T Consensus 163 ~~----------~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~ 232 (372)
T KOG3912|consen 163 LV----------TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIP 232 (372)
T ss_pred cc----------cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhee
Confidence 00 0111 134478999999999999999999888777754 78899999999997766665543311
Q ss_pred ---CCCCccccchhHHHH---------HHHHHHHHHHHHHHHHHH----HhcccCcchhhhhhhhHHHHHHHHHHHHhcC
Q 020833 237 ---EPSDWKLGLDIGLVA---------VLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD 300 (321)
Q Consensus 237 ---~~~~~~~~~~~~~~~---------l~~~g~~~t~~~~~l~~~----~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E 300 (321)
+.+.-+-....+|.- .++..+.+..++..+++. -.|..++++=.+...+...+-=+++.....|
T Consensus 233 ~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E 312 (372)
T KOG3912|consen 233 SGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE 312 (372)
T ss_pred cCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 111000000111221 234445455555555433 3577888888899999888888889999999
Q ss_pred ccchhhhHHHhh
Q 020833 301 AFCLGRILCSDV 312 (321)
Q Consensus 301 ~~t~~~~iG~~l 312 (321)
.++..|+.|.++
T Consensus 313 ~f~llqilGFli 324 (372)
T KOG3912|consen 313 YFHLLQILGFLI 324 (372)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.36 E-value=0.00013 Score=65.79 Aligned_cols=210 Identities=12% Similarity=0.046 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 74 ~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
+.+...++.|++=.+.+...+.+.++.+.+++.=+.. +.-+.+.+.+.++++|--+.+++. .-..++++-++|+.+-
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHh
Confidence 6666667777777888999999999999888665553 455667888999999987665431 2344667777887664
Q ss_pred hhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 020833 153 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL 232 (321)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l 232 (321)
.. ++++. . ..+...+...|....+++.+.|-.|.+..|. .+. |++...+-|.+--.+...++..
T Consensus 121 s~-~~~~~-----------~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 121 SY-QDKKS-----------D-KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred cc-ccccc-----------c-ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhh
Confidence 32 11110 0 0112334567999999999999999998654 222 4666555444322222233333
Q ss_pred HhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhH
Q 020833 233 IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308 (321)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~i 308 (321)
+.+... ++ ...|..+ ..|+ .=.++-.++..+.++.|.+..=.++-+.++.+.+.|.++++|+=+..++.
T Consensus 185 ~~~~~~--~~---k~~~~ni-l~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~ 253 (269)
T PF06800_consen 185 FSKKPF--FE---KKSWKNI-LTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI 253 (269)
T ss_pred cccccc--cc---cchHHhh-HHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH
Confidence 222111 11 1123322 2233 23456667888999999999999999999999999999999987766554
No 47
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.28 E-value=1.9e-05 Score=63.69 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHH
Q 020833 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 263 (321)
Q Consensus 184 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~ 263 (321)
|.++.+.+.++-+...++-|+-.++.++ ...... . . ...... . + ....++.|+++.+.+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~-~--~-----------p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF-G--L-----------ALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH-h--c-----------cHHHHHHHHHHHHHH
Confidence 5678888888889999888877766542 111111 0 0 000000 0 0 012467889999999
Q ss_pred HHHHHHHhcccCcchhhhhhhhHHHHHHHHHHH--HhcCccchhhhHHHhh
Q 020833 264 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGRILCSDV 312 (321)
Q Consensus 264 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~--il~E~~t~~~~iG~~l 312 (321)
+.+|.+++++.+.+.+.++....++...+.++. ++||++|+.+++|.++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~l 112 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVAC 112 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999989888885 8999999999999988
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.26 E-value=1.4e-05 Score=73.55 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 86 (321)
..|+.+..+++.+.++......|.. +.||....+.... +++.++.+.. ++. ++. +.+.....++.|++-
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~-~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPL-KKYAILLNILPGLMW 221 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---hcc-cch-HHHHHHHHHHHHHHH
Confidence 4789999999999999999999974 3788888555544 3333333221 111 222 222333444577776
Q ss_pred HHHHHHHHHhhc-ccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 87 ~~~~~~~~~al~-~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
...+.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.+.++. +.-++|.++-+.|+.++.
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 777889999999 99999999999999999999999999999987752 112378888888887654
No 49
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.24 E-value=4e-05 Score=72.39 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-----------CCCC
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-----------PQLT 72 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~ 72 (321)
+..+.+..+++.+.|+...+.+|..++. +.++.....+-..+++++++|+.......+. ....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 4669999999999999999999997653 2567667666678888888887653211100 0001
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 73 FSILCSFFL-LSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 73 ~~~~~~~~~-~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
+......+. .++..+..+.+.|++++++++..+++..++-|++++++++++++|+++.. +++|..+.+.|+.+
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 111111112 22233555555667999999999999999999999999999999998765 58999999999876
Q ss_pred hh
Q 020833 152 VT 153 (321)
Q Consensus 152 l~ 153 (321)
..
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 43
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.23 E-value=7.8e-06 Score=64.17 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
..++++ ..++.++..+++..|.+.+-.+.++.|+++.++++++++||++.+ |++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 344455 778899999999999999999999999999999999999999876 5899999999998764
No 51
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.17 E-value=6.4e-05 Score=68.04 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~ 87 (321)
...+.+..+.+.+.|+...+..|... +.++..... +.+........+... .... .....+++......|+++ .
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999864 466766666 444422222222211 1111 234566777788888888 5
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
..+.++++++++.+++..+.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999998765 5899988888887754
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.17 E-value=2.1e-05 Score=69.37 Aligned_cols=194 Identities=10% Similarity=-0.019 Sum_probs=109.1
Q ss_pred hhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcC-----------CCCCcCCCCCCCCCCccc
Q 020833 106 TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRLL 174 (321)
Q Consensus 106 ~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~-----------~~~~~~~~~~~~~~~~~~ 174 (321)
....+..|+++++..+...+||.+ + .|++++.+...|++.-...+ +..... .+++.+.
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~-~-----~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~-----~~~~~~~ 76 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVT-Q-----LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQ-----MVQSSAK 76 (222)
T ss_pred HHHHhcchHHHHHhcccccceeee-h-----HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeee-----cCCCCcc
Confidence 344456677777777777777765 2 35777777777765321100 000000 0000000
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhccCC-CCccccchhHHHHH
Q 020833 175 LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVL-IIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAV 252 (321)
Q Consensus 175 ~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~l 252 (321)
.....+...|....+.++++-+...+.+++..|+.+... .-+....+++.+.........+.+. .++.... .+...
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI--GYPTA 154 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc--CCchH
Confidence 011124567888888888888888888888766542111 1111111222221111111111111 1111000 00011
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+.-++....+..+..+.+|+.+++..+....++++++.+++++++||+++..+++|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~l 214 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAIL 214 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 111223556677778889999999999999999999999999999999999999999987
No 53
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.16 E-value=2.3e-05 Score=67.66 Aligned_cols=245 Identities=14% Similarity=0.145 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHH
Q 020833 42 YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI 121 (321)
Q Consensus 42 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~ 121 (321)
+.+.+.+.+....-++.+-+.+--+- +.++.+.++...++-..-.+.--.+++|.+...=++.-++.-+.++....
T Consensus 38 flll~vQSlvcvv~l~iLk~l~~~~f----R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEv 113 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLRLVEF----RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEV 113 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhe----ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHH
Confidence 55677777766655555422211111 12223334444444423233445688999988888888888777777777
Q ss_pred HHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 020833 122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFIL 201 (321)
Q Consensus 122 l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl 201 (321)
.+++.|++. ......++-+.--+.-. + ++. |.........+.|-+++..-+++-|.+.+.
T Consensus 114 l~Fgg~vts------l~l~SFilMvlSS~va~-w-~D~------------q~~~~~~~~lN~GY~Wm~~NclssaafVL~ 173 (309)
T COG5070 114 LFFGGRVTS------LELLSFILMVLSSVVAT-W-GDQ------------QASAFKAQILNPGYLWMFTNCLSSAAFVLI 173 (309)
T ss_pred HHhcCccch------hhHHHHHHHHHHHHHhc-c-chh------------hHHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence 777777653 23333333333221111 1 110 001111123356888888999999998887
Q ss_pred HHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 020833 202 QALILRK--FAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKL-GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL 277 (321)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~l~~~i~~~~~~l~~~~-~~~~~~~-~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~ 277 (321)
-|+..|- ..| ..-++|..+.+..++..+.+++|+ ++.+... -+.....+++..|+ +++.--++-.|+.+-.+.+
T Consensus 174 mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSST 251 (309)
T COG5070 174 MRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSST 251 (309)
T ss_pred HHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhh
Confidence 6664432 222 345689999999999998888875 2221111 11234567777787 5555556778999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 278 YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 278 ~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+-|++.-+.-.-..+-|.+++||+.+-..+....+
T Consensus 252 tySMvGALNKlp~alaGlvffdap~nf~si~sill 286 (309)
T COG5070 252 TYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL 286 (309)
T ss_pred HHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999888777666
No 54
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.09 E-value=1.8e-05 Score=62.22 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+...+..|+++...++.++.++.++.++ .++....+.|+++.++++++++|+++..+++|..+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l 96 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILL 96 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4445566776767889999999999995 88899999999999999999999999999999877
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.06 E-value=0.0035 Score=58.73 Aligned_cols=287 Identities=11% Similarity=0.018 Sum_probs=156.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-HHHHhhhcC---CCCCCHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLF-CSFLFHRSE---RPQLTFSILCSFFLLSV 84 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~ 84 (321)
+...+++..+++.++||+.+.-.|..-+.+.+.++.+.- .++.++... .....-|.- ....+.+.+...++.|+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~g--i~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGG--IFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 356689999999999999999999843223334433111 122221110 011101110 01234455556666677
Q ss_pred HHHHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccc---cccccccchhhhhHHHhhchhhhhhhc---CC
Q 020833 85 FGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFY---KG 157 (321)
Q Consensus 85 ~g~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~---~~ 157 (321)
+=...++.++.++++...+.+.-+. .+.-+...++..++++|=- +.++. ..-.+|+++.++|+.+...- ++
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g--~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG--RMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH--HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 6678889999999999998877665 4777778888888877533 33321 22467899999999886531 11
Q ss_pred CCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHH---HHHHHH
Q 020833 158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF-------ILQALILRKFAAVLIIMFYLFF---FNTILS 227 (321)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------vl~~~~~~~~~~~~~~~~~~~l---~~~i~~ 227 (321)
.+. .+++..+.+...|+..++++.+.+++|+ ...+...+...++.....-+.. .|.++.
T Consensus 160 ~~~-----------~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 160 RKM-----------GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred ccc-----------ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 100 0000233566899999999999999999 5443321111133333333332 444433
Q ss_pred HH-HHHH---hccCCCCc-cccc-----hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh----hhhhhHHHHHHHH
Q 020833 228 TA-FALI---VVSEPSDW-KLGL-----DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS----MFKPLAIVFSIVM 293 (321)
Q Consensus 228 ~~-~~l~---~~~~~~~~-~~~~-----~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s----~~~~l~Pv~a~i~ 293 (321)
-. ++.. ..+..+.. +... ..+...-+..|+ .=.+++.+|..+-++.+..... +.+.+..+++.++
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 32 2221 11111101 1111 111111122222 3345566777777777554332 2235566999999
Q ss_pred HHHHhcCccc------hhhhHHHhh
Q 020833 294 DVVIVGDAFC------LGRILCSDV 312 (321)
Q Consensus 294 ~~~il~E~~t------~~~~iG~~l 312 (321)
|. +++|.=+ ...++|.++
T Consensus 308 Gi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 308 GL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred hh-hhhhccCCCccchhHHHHHHHH
Confidence 99 5999755 444555554
No 56
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2.6e-05 Score=69.34 Aligned_cols=247 Identities=14% Similarity=0.041 Sum_probs=139.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhc----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhH
Q 020833 40 NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 113 (321)
Q Consensus 40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~P 113 (321)
.|.....++.+....+-..+-....+. ..++ ++.+.-+....+.+.-..-..+-.++++|.+.+.=-+=-.+.-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 367788888877766544443322221 1122 2333333333333322111112344556655443222234666
Q ss_pred HHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHH
Q 020833 114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF 193 (321)
Q Consensus 114 v~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 193 (321)
+|+.++.++++|+|-+.. .++-+|++++.+.-|.+ || +..+.-...|.+++..|.+
T Consensus 140 vFtVlLtyvllkqkTs~~-----------~~~~C~lIi~GF~lGvd------------qE-~~~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFF-----------ALGCCLLIILGFGLGVD------------QE-GSTGTLSWIGVIFGVLASL 195 (347)
T ss_pred hHHHHhHHhhcccccccc-----------cceeehhheehheeccc------------cc-cccCccchhhhHHHHHHHH
Confidence 899999999998885542 12223443433322222 11 1222334789999999999
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--cc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020833 194 MNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LG-LDIGLVAVLYSAVIGTGFRVGLCTW 269 (321)
Q Consensus 194 ~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~--~~-~~~~~~~l~~~g~~~t~~~~~l~~~ 269 (321)
+-|+..+..|+...... ..+..+.|..+.+.++.+|...+.++-...++ .. ...-|..+...|+++-.++|.- .+
T Consensus 196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~ 274 (347)
T KOG1442|consen 196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GW 274 (347)
T ss_pred HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eE
Confidence 99999999887665543 33677889999999988888776544222222 22 1234666777777665555542 23
Q ss_pred HhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHh
Q 020833 270 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSD 311 (321)
Q Consensus 270 ~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~ 311 (321)
-+|-.+|.+-.....--...=.++++..++|.-+..-+-|-+
T Consensus 275 QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~ 316 (347)
T KOG1442|consen 275 QIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNI 316 (347)
T ss_pred EEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeE
Confidence 345555554444444444455677889999988766554433
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.98 E-value=6e-05 Score=59.13 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 256 AVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 256 g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
++++.+.++.++.+++++.+...+.+..++.|+++.++|++++||++|..+++|.+++
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~li 100 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFI 100 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999874
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.97 E-value=7.6e-05 Score=68.88 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~ 88 (321)
...+....+.++++-+.....-|.+... .+. .-.| ++..++...|+..+ ..|++. ..
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~~~~~~~l~~~~W--~~G~~~~~~ 62 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AGSGGRSYLRRPLW--WIGLLLMVL 62 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------ccchhhHHHhhHHH--HHHHHHHhc
Confidence 4456666777777777777777775332 110 0000 00001111222222 233333 45
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhc
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 155 (321)
...+-+.|+.+.|++..+=+....-++.++++..+++||++++ ++.|..+++.|..+++..
T Consensus 63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 5677789999999999888888888999999999999999765 579999999999887643
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.79 E-value=0.00046 Score=55.59 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHH
Q 020833 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ 90 (321)
Q Consensus 12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~ 90 (321)
++++..+.+.++=+...++-|.+.+. .++....... ...+. . . .+ ...++..|+.. ..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~~--~~~~~----~-~--~~---------p~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWDF--IAALL----A-F--GL---------ALRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhHH--HHHHH----H-H--hc---------cHHHHHHHHHHHHHHH
Confidence 36777888888888899999998754 4433322111 10100 0 0 00 11246677777 8889
Q ss_pred HHHHHhhcccchhhHhhhhhhhHHHHHHHHHH--HhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l--~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+|.++++..+.+.+.-+.+..+..+.+.++. +++|+++.+ |++|+.+.++|+.++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999998888888888774 799999875 5899999999998865
No 60
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.76 E-value=0.00032 Score=59.64 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 166 (321)
...++.|..|++..++++++.+..+...|+.+++++++++|+..- |+++.++++-|++++...+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence 456789999999999999999999999999999999999998754 5899999999998876321
Q ss_pred CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020833 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 208 (321)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~ 208 (321)
..-.+-+.|+.++..||+.-|+|-++-|+...+
T Consensus 128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 011233789999999999999999999887655
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.58 E-value=0.00099 Score=60.11 Aligned_cols=132 Identities=10% Similarity=0.012 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 88 (321)
+..|+.+.++++.+.+.....+.|.. ++||....+=...-..+--..+..+.+++. .+++.++ -++.|++-..
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~---~~k~~~~-nil~G~~w~i 207 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKPF---FEKKSWK-NILTGLIWGI 207 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcccccc---cccchHH-hhHHHHHHHH
Confidence 56789999999999999988888873 478877766554433333223322221111 1222333 3566777667
Q ss_pred HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchh
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv 149 (321)
.+.+++.+.+....+.+-.+.++.+++..+-+.+++||+=+.|++ ...++|+++-++|.
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGA 266 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhh
Confidence 788999999999999999999999999999999999999665542 23345555555554
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.34 E-value=0.0026 Score=59.45 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=101.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHH
Q 020833 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTF--SILCSFFLLSVF 85 (321)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 85 (321)
.++.++.+.++.+++++|.+.+.-|..+. +.|+.++...=-+++.++..+......++...+.+| +.....+.-++.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 46788999999999999999999999875 488888877777777777776665555543322322 222222222222
Q ss_pred HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
.+..+.+.-..+++++|+...+-.-+..++..++..++++|++++. .++|.++.++|.++...
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 2555556667788898887777677888999999999999998753 57899999999888753
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.16 E-value=0.0053 Score=55.47 Aligned_cols=128 Identities=10% Similarity=0.069 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-ccchhHHHHHHHHHHHHH
Q 020833 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT 260 (321)
Q Consensus 182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~g~~~t 260 (321)
..|+++.+.|-+.|..--.+.|. .++.+ +..+..+..+.+.......-....+...-++ ...+..+......++ --
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence 45899999999999987776654 55553 5677777777776655554443322111111 122334555555555 34
Q ss_pred HHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 261 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 261 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.....+|.|+..+-....+|+=-++.|.+.+++|.++++|+++..|++..++
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~l 134 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGL 134 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999998776
No 64
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0054 Score=56.10 Aligned_cols=260 Identities=15% Similarity=0.103 Sum_probs=140.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~ 87 (321)
++.++.+..+.+.++.|.++.+-|.++-. ..... . +.++.+....+++.+ -.|++- .
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~~-------~--ra~~gg~~yl~~~~W--w~G~ltm~ 75 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGASG-------L--RAGEGGYGYLKEPLW--WAGMLTMI 75 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhhc-------c--cccCCCcchhhhHHH--HHHHHHHH
Confidence 45566777777788888888888876432 11100 0 111111122233222 234333 4
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 167 (321)
+....-|-|..+.|++..+-+.++.-+..++++..+++||++++. .+|..+|++|-.+++.. +|..+..
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~h-aP~e~~i---- 144 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIH-APKEQEI---- 144 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEe-cCccccc----
Confidence 455566677888898888888899999999999999999998765 68999999999998743 3321100
Q ss_pred CCCCccc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--------HHH--HHhcc
Q 020833 168 GSPRRLL-LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILST--------AFA--LIVVS 236 (321)
Q Consensus 168 ~~~~~~~-~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~--------~~~--l~~~~ 236 (321)
.+.++.. --.+..+..-..+.++... ++.=...+++. ...+..|..+++.+.++ -.+ +...+
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil~~~------il~~~~~p~~g-~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g 217 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIILIVL------ILIFFYAPRYG-QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG 217 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHH------HHheeeccccc-ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence 0000000 0011111111111111111 11111123322 12233444444433211 111 11121
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhh-HHHHHHHHHHHHhcC--ccchhhhHHHhh
Q 020833 237 EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGD--AFCLGRILCSDV 312 (321)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l-~Pv~a~i~~~~il~E--~~t~~~~iG~~l 312 (321)
.. +... +..|..++.... +........+++++..+++.++++.|. -..++++-|.+.++| ..+..++.+-++
T Consensus 218 ~~-ql~~--~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~ 292 (335)
T KOG2922|consen 218 NN-QLFY--PLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELC 292 (335)
T ss_pred Cc-cccc--HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 11 2111 234554444443 555666667999999999999998887 677888889999998 444555554443
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0088 Score=53.00 Aligned_cols=131 Identities=13% Similarity=0.027 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C 87 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~ 87 (321)
.+..+..+.+.+..+|+..-+..|.+-+ ..+-..-+..-+..++++.+|+-.-. ....-.+.+-...-...|+++ .
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~--ag~~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ--AGPALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh--cchhhcChHHHHHHHHHHHHhcc
Confidence 3566777788889999999999998744 36667788888999999999985421 111112344445556678888 8
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhch
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~G 148 (321)
+.+.+...+++..|...=+++.++.|.+.++.++++++|+++..+ |+++..-+++
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaA 276 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAA 276 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765 5555544443
No 66
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.02 Score=51.35 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhc
Q 020833 69 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 147 (321)
Q Consensus 69 ~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~ 147 (321)
++.+.|++ .+...++ +..+.+-.+++++ ++--.=.++-.-.++.++++++++.+.|-+.+ |+.++++--+
T Consensus 60 ~kiplk~Y--~i~V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDY--AITVAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhh--heehhee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 45555553 2223333 3445566777766 34333344445667888999999988887655 5888988889
Q ss_pred hhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 020833 148 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTIL 226 (321)
Q Consensus 148 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~ 226 (321)
|+++-...+.++... -.++.+.+ +.......|..|+.+...|-+.-|.-.+.+++.-||+. |+-..++|.-......
T Consensus 131 GiiIcTl~s~~d~~~-~~~~l~~~-~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~ 208 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS-KLSGLDSG-SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL 208 (330)
T ss_pred hheeEEeecCcchhh-hhcccccC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence 987765544443321 00000000 00112234578998888888888888888887767665 5556677777665433
Q ss_pred HHHHH--------HHhccC---CCCccccchhHHHHHHHHHHHHHHHH-HHHH---HHHhcccCcchhhhhhhhHHHHHH
Q 020833 227 STAFA--------LIVVSE---PSDWKLGLDIGLVAVLYSAVIGTGFR-VGLC---TWCLSRTGPLYVSMFKPLAIVFSI 291 (321)
Q Consensus 227 ~~~~~--------l~~~~~---~~~~~~~~~~~~~~l~~~g~~~t~~~-~~l~---~~~l~~~~a~~~s~~~~l~Pv~a~ 291 (321)
.+... ....++ .+......+..|..++ ..++. |.|- +..-.+.++-+++++..+.-.++.
T Consensus 209 Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSL 283 (330)
T KOG1583|consen 209 FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSL 283 (330)
T ss_pred HHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHH
Confidence 32211 000000 0011111233454433 33333 4432 223356677789999999999999
Q ss_pred HHHHHHhcCccchhhhHHHhh
Q 020833 292 VMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 292 i~~~~il~E~~t~~~~iG~~l 312 (321)
+++.+.+++++|+..++|.++
T Consensus 284 l~SiiyF~Npft~~h~lGa~l 304 (330)
T KOG1583|consen 284 LFSIIYFENPFTPWHWLGAAL 304 (330)
T ss_pred hheeeEecCCCCHHHHHHHHH
Confidence 999999999999999999988
No 67
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.01 E-value=0.017 Score=47.09 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 264 (321)
Q Consensus 185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~ 264 (321)
.++.+++...-++...++.++.++..+|+.-+++.+..|.+.+.++..+.++. +++......|. .|+|=+.++..-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHHH
Confidence 46778889999999999999999876688888999999999888887776542 11111111122 122333455666
Q ss_pred HHHHHHhcccCcchhhhhhhh-HHHHHHHHHHH----HhcCccchhhhHHHhh
Q 020833 265 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGRILCSDV 312 (321)
Q Consensus 265 ~l~~~~l~~~~a~~~s~~~~l-~Pv~a~i~~~~----il~E~~t~~~~iG~~l 312 (321)
.+..+..++.|++........ |-+.+.+++.+ .-++++|+..++|.++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l 131 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLAL 131 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHH
Confidence 677888999999876655544 88888899987 5567899999999876
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.93 E-value=0.02 Score=52.96 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHH--hhhcCC----CCCCHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFL--FHRSER----PQLTFSILCSFFLLSVF 85 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~g~~ 85 (321)
+++.++++.+.-|.....-+...+. +.++.+..++--.++.++..+.... ...... ...+.+.+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 8899999999999999999887744 6899999999999988887766554 111110 01112234445556666
Q ss_pred HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
+...+.+.+.-.+..++...+++..+--+.+.+++.++++++++.. +|.|+++.+.|..+-.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 7777778888889999999999999999999999999999998765 5899999999987754
No 69
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.057 Score=48.46 Aligned_cols=275 Identities=9% Similarity=0.094 Sum_probs=155.1
Q ss_pred hhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 020833 6 GSMRAALPSVGMVIVLL-AQVSNMEVIKAAMS-KGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFL 81 (321)
Q Consensus 6 ~~~~~~~~~l~l~~~~~-~wg~~~~~~K~~~~-~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (321)
+-.+||..++....+.+ .+=.+...-.+... .++.| +.+++.+++.=.-+-+.-+.. .+.+++..++|. +..
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~-~~~k~r~iP~rt---Y~~ 111 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL-IQTKRRVIPWRT---YVI 111 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe-ecccceecchhH---hhh
Confidence 33456666665555544 22333333333221 24665 345555555433332221111 122333455654 233
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHhhhhh---hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833 82 LSVFGCSSQIFSFVGIQYSSPTLSTAMLN---LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (321)
Q Consensus 82 ~g~~g~~~~~~~~~al~~~~a~~a~~l~~---~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 158 (321)
++.+-...+-+-.-++.|.+=- +.++.- +.|+. +.+.++-+.|- ...+.++..+-.+|++..... +
T Consensus 112 la~~t~gtmGLsn~SlgYLNYP-tQviFKccKliPVm--iggifIqGkRY------~v~d~~aA~lm~lGli~FTLA--D 180 (367)
T KOG1582|consen 112 LAFLTVGTMGLSNGSLGYLNYP-TQVIFKCCKLIPVM--IGGIFIQGKRY------GVHDYIAAMLMSLGLIWFTLA--D 180 (367)
T ss_pred hHhhhhhccccCcCccccccCc-HHHHHHhhhhhhhh--heeeeeccccc------cHHHHHHHHHHHHHHHhhhhc--c
Confidence 3332222222333334443211 234432 45543 33555544443 345667777777898776532 1
Q ss_pred CCcCCCCCCCCCCcccCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020833 159 PLIGELSHSGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS 236 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~ 236 (321)
+ ..+++ ...|....-.|-++=|+-..+|.+..|.++ +...+.++...+|.+.+......++.
T Consensus 181 s----------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge 244 (367)
T KOG1582|consen 181 S----------------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE 244 (367)
T ss_pred c----------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc
Confidence 1 11222 257887777777777887788888887765 44567788888898888887777655
Q ss_pred CCCCccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 237 EPSDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 237 ~~~~~~~---~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
-.+.|+. .+.......++.+. .+.++...-.-.++..|+..++.+....--.+++++.+++..++|.+..-|+.+
T Consensus 245 ~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gll 322 (367)
T KOG1582|consen 245 LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLL 322 (367)
T ss_pred chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHH
Confidence 4445543 22233444444443 445555555556778899999999999999999999999999999887776665
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.42 E-value=0.089 Score=49.42 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=87.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHh-hh-cCC-----C
Q 020833 8 MRAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLF-HR-SER-----P 69 (321)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~-------~~~K~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~-~~-~~~-----~ 69 (321)
.+..|+.+.++++.+.++... +..+.+.+.+.+|.....-.+. ++.++.- .++.+. +| ++. .
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 356889999999988888877 6676665567887765555544 4444322 222321 12 111 1
Q ss_pred CCC----HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhh---hh-hhhHHHHHHHHHHHhhccccccccccchhhhh
Q 020833 70 QLT----FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLG 141 (321)
Q Consensus 70 ~~~----~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~---l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g 141 (321)
+.+ +++....++.|++=+..+.++.+|....+...+.+ +. ++.-++..+-+. ++||+=+-.+|..+.-++|
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 111 22222234444444677778888888775555544 54 344355554455 6899977545556667889
Q ss_pred HHHhhchhhhhh
Q 020833 142 TFASIGGAFVVT 153 (321)
Q Consensus 142 ~~l~~~Gv~ll~ 153 (321)
+++-++|..++.
T Consensus 329 ~vliI~g~~lig 340 (345)
T PRK13499 329 CVVIILAANIVG 340 (345)
T ss_pred HHHHHHHHHHHh
Confidence 988888887765
No 71
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.38 E-value=0.011 Score=44.69 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcccCcchh-hhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 257 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 257 ~~~t~~~~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
+.+-++++.++.+++|+.+...+ +...-+..+...+.|++++||++|+.+++|..++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33567888999999999998876 4455688999999999999999999999998763
No 72
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.12 E-value=0.017 Score=45.26 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020833 18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGI 97 (321)
Q Consensus 18 ~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al 97 (321)
+++.++||.+.++.|.+.+. .++..-.. |..--... -.+++.+.+... +.-...+.|++.+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~----------------Ll~n~~y~ipf~-lNq~GSv~f~~~L 62 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF----------------LLLNPKYIIPFL-LNQSGSVLFFLLL 62 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH----------------HHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence 45788999999999998654 55433321 31111111 011222332222 2234457888999
Q ss_pred cccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 98 QYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 98 ~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
...+.+.+.-+. ++.=++|++.++++++|..+++ .++|+.+.++|+.+
T Consensus 63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 999999888886 4677888888877765554433 48999999999865
No 73
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.99 E-value=0.039 Score=50.98 Aligned_cols=109 Identities=13% Similarity=0.040 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHH
Q 020833 180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIG 259 (321)
Q Consensus 180 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 259 (321)
++..|..+++.++++.+...+++|+-.+|.++ .-.--. ... .+...+..|. .|...
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~--~~~~~~----------------~~~--~~~l~~~~W~----~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR--GSLRAG----------------SGG--RSYLRRPLWW----IGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc----------------chh--hHHHhhHHHH----HHHHH
Confidence 46789999999999999999999887666432 000000 000 0000001122 23333
Q ss_pred HHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 260 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 260 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+++..+...++...+++.++++..+.-++..+++..++||+++...++|+++
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l 112 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCAL 112 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHH
Confidence 44555666677788899999999999999999999999999999999999987
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.63 E-value=0.03 Score=51.88 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhhcCC---C--CCCHHHHHHHH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAM---SKGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSFF 80 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~~ 80 (321)
++.+.+....+.+..+...+++|..+ ++..+++.+..+-.-++..+++ |+......... . ..+.+.+ ...
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence 57889999999999999999999987 3359999999999889998888 87655332221 0 1122222 222
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 81 ~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
...++.+..+...|+.+.++||-.=++...+==.++...++++++|+++.. +.+|..++++|+.+-.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 334555777888899999998876565554333444556788888888665 5899999999998754
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.57 E-value=0.04 Score=43.73 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
..+++++..++++.|.+.|=.+. ...-+.+.+.+.++++|+++++ |++|+.+-++|++.+-
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 67888999999999999887665 4777888889999999999875 5899999999997764
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.50 E-value=0.23 Score=38.64 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
..++.+...++++.|.+.+=.+.. .--+.+.+.+.++++|++++. |++|+.+-+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 677888899999999998765543 666777888999999999875 589999999998764
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.40 E-value=0.063 Score=41.93 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=52.4
Q ss_pred HHHH-HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 83 SVFG-CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 83 g~~g-~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.+.+ .+++.++..++++.|.+.|=.+. ..--+.+.+.++++++|++++. |++|+.+-++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444 67788889999999999876664 3666777889999999999875 5899999999998874
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.046 Score=42.14 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
..++.+...++++.|.+.|=.+. ..--+-+.+.++++++|+++.. |++|+.+-++|++.+-
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 67788999999999999876554 4667788889999999999865 5899999999987753
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.32 E-value=0.093 Score=40.99 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcccCcchh-hhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 257 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 257 ~~~t~~~~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+.+-..++.++..++|+.+...+ +...-+.-+...+.|++++||++|+.+++|.++
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~l 93 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML 93 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44557788888999999887643 333556788889999999999999999999988
No 80
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.14 E-value=0.09 Score=41.71 Aligned_cols=57 Identities=9% Similarity=0.220 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcccCcchhh-hhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 256 AVIGTGFRVGLCTWCLSRTGPLYVS-MFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 256 g~~~t~~~~~l~~~~l~~~~a~~~s-~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+.+-++++.++.+++|+++...+= ...-+.-+...+.|++++||++|+.+++|.++
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~l 93 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTT 93 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445678899999999999877543 33457888899999999999999999999988
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.10 E-value=0.65 Score=37.79 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHH-HHH
Q 020833 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF-TFV 118 (321)
Q Consensus 40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~-~~l 118 (321)
+|..-.+.-+..+.+.+..+..+.+++.....+ +..++...-|++|.....+..+..+..+++.+..+.-+.-+. ..+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999888776664443222111 112234457888877778888999999999888776554433 333
Q ss_pred HHHH--HhhccccccccccchhhhhHHHhhchhhh
Q 020833 119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 119 l~~l--~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
+..+ +..|| ++.+..|.+|+.+.++|+.+
T Consensus 108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 4443 22222 23455679999999999753
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.07 E-value=0.094 Score=40.59 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
..++.+...++++.|.+.+=.+.. .--+-+.+.+.++++|++++. |++|+.+-++|++.+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 677888899999999998766654 667778889999999999875 589999999998775
No 83
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.06 E-value=0.026 Score=50.51 Aligned_cols=123 Identities=12% Similarity=0.146 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 261 (321)
Q Consensus 182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~ 261 (321)
.+|..+.-++ ..+....+..++..+.. |....-...++-..+..+..+... ++ -|..+....|+ +.=|+.+ .
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~-~~-v~gp~g~R~~L--iLRg~mG-~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYM-QP-VIGPEGKRKWL--ILRGFMG-F 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEe-ee-eecCCCcEEEE--Eeehhhh-h
Confidence 4677777777 66666677777776653 333332333222222222211111 11 11111111222 2223322 3
Q ss_pred HHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 262 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+..+.+|++++++-+.++++.++.|+++++++|.+++|+.|....+|..+
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~i 159 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLI 159 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 445666788999999999999999999999999999999999999998876
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.66 Score=38.18 Aligned_cols=128 Identities=15% Similarity=0.097 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833 182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 261 (321)
Q Consensus 182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~ 261 (321)
....+..+++..+-....-.+.++.+...+|..-..+.+.+|++.+..+.++.+..+ ++.......|.. ..-|+ ..+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~-~~GG~-lGa 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWA-WIGGL-LGA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHH-HHccc-hhh
Confidence 345678888899999999999998888777888888999999999998888754322 122111111221 11233 222
Q ss_pred HHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhc----CccchhhhHHHhh
Q 020833 262 FRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVG----DAFCLGRILCSDV 312 (321)
Q Consensus 262 ~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~----E~~t~~~~iG~~l 312 (321)
+--..-.....++|++ ++.....-|-+.+.+++.+=+. .+++...++|.++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L 136 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILL 136 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHH
Confidence 2223345667888776 4555566688888888887666 6888988888877
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.83 E-value=0.1 Score=39.38 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHH
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 144 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l 144 (321)
..++.++..++++.|.+.+=.+ ..+..+.+.+.+.++++|+++.++ +.|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 6778899999999999998444 458888999999999999998764 566653
No 86
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=94.71 E-value=0.6 Score=36.35 Aligned_cols=55 Identities=4% Similarity=-0.008 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcccCcch-hhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 258 IGTGFRVGLCTWCLSRTGPLY-VSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 258 ~~t~~~~~l~~~~l~~~~a~~-~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+-.++|.+...++|+++... -+...-+.-+...+.|++++||++|+.+++|.++
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~l 98 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVL 98 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 355788999999999998763 3556667888899999999999999999999887
No 87
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.05 E-value=0.25 Score=38.20 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 257 VIGTGFRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 257 ~~~t~~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+.+-..+|.+...++|+++.. --+...-+..+...+.|++++||++|+.+++|..+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~l 92 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLAL 92 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 335578889999999998866 34566667889999999999999999999999887
No 88
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.89 E-value=0.25 Score=38.16 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 259 GTGFRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 259 ~t~~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+-..+|.+..+++|+++.. --+...-+..+...+.|++++||++|..+++|..+
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~L 93 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLAL 93 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 4568889999999998765 34667778889999999999999999999999887
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.01 E-value=0.017 Score=51.07 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (321)
.++..++=++.||+...++..- . =+|.+-..- ..++++++....+++.+ |-.+.+.+..-++.|++=...+..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--G-G~p~qQ~lG-tT~GALifaiiv~~~~~---p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--G-GKPYQQTLG-TTLGALIFAIIVFLFVS---PELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--C-CChhHhhhh-ccHHHHHHHHHHheeec---CccchhhHHHHHHhhhHhhhhhhh
Confidence 4566777789999988877652 2 344332222 23444444443333322 234455554444555554677888
Q ss_pred HHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCC
Q 020833 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (321)
Q Consensus 93 ~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 171 (321)
.+.|.++.+.+++.=+.. +.-+-+-+++.+.++|=-+..+. ..-.+++++-++|+.+=. .+.+ +++
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~-----~nk----- 142 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDR-----NNK----- 142 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eecc-----ccc-----
Confidence 899999999998776654 55566666777788876443321 011223444455554321 1111 000
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHH
Q 020833 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251 (321)
Q Consensus 172 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 251 (321)
++++..+.-.|....+.|.+.|-.|.++.+... . |.++...-| .+|.+......-....+. ..+ ...|..
T Consensus 143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPq-AiGMv~~ali~~~~~~~~-~~~---K~t~~n 212 (288)
T COG4975 143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQ-AIGMVIGALILGFFKMEK-RFN---KYTWLN 212 (288)
T ss_pred --cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHH-HHHHHHHHHHHhhccccc-chH---HHHHHH
Confidence 122334457899999999999999999866543 2 233332222 233322222221222111 000 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 252 VLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 252 l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+ .-|+ .=.++-..+..+.++.|..+.=.++-+..+.+.+=|.++++|+=|..++.....
T Consensus 213 i-i~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 213 I-IPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred H-hhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 2 2233 224455666777788887766556666778899999999999988777654433
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.27 E-value=1 Score=39.32 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
.+.+.....+..+.++|.++..-+....+.++++.+++.++++|+++.. +++|..+.+.|+.+
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 3444556678889999999999999999999999999999999998764 58999998888643
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.57 E-value=1.6 Score=41.12 Aligned_cols=138 Identities=12% Similarity=0.149 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHR---SERPQLTFSILCSFFLL 82 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~ 82 (321)
+...+.+..+++++.+|...++.|.-.+++ .|-..+-.+=-++..++++|...+..+ .+..-.+..+...++..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 346788999999999999999999854432 455555555556666677754443222 11111122334456677
Q ss_pred HHHH-HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 83 g~~g-~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
++++ .++=++|.+|.-.+++..+++=+. +.|+- ++...++.+. .++...++|...-++|-+++.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA-~~aD~l~k~~------~~S~~~iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLA-MFADVLIKGK------HPSALYIIGSIPIFVGFVIVN 389 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHH-HHHHHHHcCC------CCCHHHHHHHHHHHHHHhhee
Confidence 8888 899999999999999988887776 66753 4445555333 356678999988888877764
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.40 E-value=6.2 Score=32.52 Aligned_cols=118 Identities=8% Similarity=-0.002 Sum_probs=66.9
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhh
Q 020833 30 VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML 109 (321)
Q Consensus 30 ~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~ 109 (321)
=++++... =+|..-.+.-+..+...+..+.....++.......+...+...-|++|..+-..-........++....+.
T Consensus 24 N~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~ 102 (150)
T COG3238 24 NGRLARYL-GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALV 102 (150)
T ss_pred HHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHH
Confidence 34444322 36888899999998888887766532222122112223344456777755555555666666666555444
Q ss_pred hhh-HHHHHHHHHH-HhhccccccccccchhhhhHHHhhchhhh
Q 020833 110 NLI-PAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 110 ~~~-Pv~~~ll~~l-~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
-.. -+...++..+ +++++ ++.++..+++|+++.++|+.+
T Consensus 103 i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~ 143 (150)
T COG3238 103 IAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILL 143 (150)
T ss_pred HHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHH
Confidence 333 3333333333 22332 234567789999999999544
No 93
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=2 Score=39.56 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhcC-----CC-CCCHHHHHHHHHH
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RP-QLTFSILCSFFLL 82 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 82 (321)
+.++|.++....+.-....+-.|...+. +.+-+.+++|--+++.+.+....++.+... .+ ..+...+....+-
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 3447888888888888888888887655 467788999999999888877765543211 01 1112223445555
Q ss_pred HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
++++++-.++-+++.+..|+..-++.....-.-+.+...+++++++++- ..+|+.++++|-++-.
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 6777777789999999999988777775555556666666777777653 4899999999987754
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.41 Score=44.10 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=80.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHH
Q 020833 177 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSA 256 (321)
Q Consensus 177 ~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 256 (321)
...++..|.++.+.+.+......++.||..+|.. . .. . ..++ .....--.+.| |.|
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~--------------~-ra~~-gg~~yl~~~~W----w~G 70 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SG--------------L-RAGE-GGYGYLKEPLW----WAG 70 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hc--------------c-cccC-CCcchhhhHHH----HHH
Confidence 3455678999999999999999988877766642 1 00 0 1111 11111101112 346
Q ss_pred HHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 257 VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 257 ~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.+...++-...+-+....+++.++++..+.-+...+++..+++|++++...+|+++
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l 126 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVL 126 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeE
Confidence 66666777777777777899999999999999999999999999999999999988
No 95
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=86.21 E-value=2.9 Score=37.39 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 261 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 261 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.++-.+.+.++++++|+...+......+++.+++++++|.+++..|+++..+
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~l 79 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFL 79 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence 4555677889999999999999999999999999999999999999999887
No 96
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=85.90 E-value=0.45 Score=42.25 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHH
Q 020833 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 263 (321)
Q Consensus 184 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~ 263 (321)
+.+++|+=++.|...-....|... +|..-+.-.. +|+++..+..+++ .+|. .+ ...++.-+..|. .=.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~-~~p~-~T---~~~~iv~~isG~-~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLF-VSPE-LT---LTIFIVGFISGA-FWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHhee-ecCc-cc---hhhHHHHHHhhh-Hhhhh
Confidence 456788888888876655444332 2333332222 3333333332222 2221 11 112332233344 23467
Q ss_pred HHHHHHHhcccCcchhhhhhh-hHHHHHHHHHHHHhcCccchhhhH
Q 020833 264 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGRIL 308 (321)
Q Consensus 264 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~i~~~~il~E~~t~~~~i 308 (321)
+..+..+++..|.+++.+++. .|-+-+.++|++.++|-.++.+++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I 118 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII 118 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH
Confidence 888999999999999998876 588999999999999988877654
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.15 E-value=1.3 Score=39.07 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 76 ~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
+..+.+.++.+...+.+.|.-+.+-++-..+++..+--.|+++.+.++++..++.| ||+|..+.+.|...=
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 34455677777788999999999999998999999999999999999999998765 589999999887553
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=82.35 E-value=23 Score=31.96 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 92 (321)
++++.+++.+.+|++++-.|.- +. -|++.+-++-.. +..+...+... -+. .++. ....++-|.+=...+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~-~i~~~g~~v~~-~~~-~p~f----~p~amlgG~lW~~gN~~ 71 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCS-GIFLVGLVVNL-ILG-FPPF----YPWAMLGGALWATGNIL 71 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHH-HHHHHHHHHHH-hcC-CCcc----eeHHHhhhhhhhcCcee
Confidence 4678889999999999999984 44 577554444322 22222222222 121 2221 12233444544556667
Q ss_pred HHHhhcccchhhHhhhhhhhHHHHHHH-HHH-HhhccccccccccchhhhhHHHhhchhhhhhhcCC
Q 020833 93 SFVGIQYSSPTLSTAMLNLIPAFTFVL-AII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 157 (321)
Q Consensus 93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll-~~l-~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 157 (321)
..-.++....+.+-.+.++.-+.+--. +.+ +++++.+..+ ......+|++++++|..+..+-|.
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecC
Confidence 778889999999988888655444333 222 3444433322 245668899999999888765443
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=81.56 E-value=2.1 Score=36.80 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 263 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 263 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+-++|..++++++|+.++.+....--|..+++++.+||++....++..++
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaail 115 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAIL 115 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45788999999999999999999999999999999999999988887766
No 100
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=80.87 E-value=6.9 Score=30.64 Aligned_cols=102 Identities=10% Similarity=-0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 020833 190 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW 269 (321)
Q Consensus 190 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~ 269 (321)
+-++.|++.+-+.|+..+..++...- . +..-... . ++. +|.. +. .+.....+-..|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~-~----Ll~-----n~~y-----~i-----pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIK-F----LLL-----NPKY-----II-----PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHH-H----HHH-----hHHH-----HH-----HHHHHHHHHHHHHH
Confidence 34678888888888887765422221 1 2111111 1 111 1111 11 23344455677888
Q ss_pred HhcccCcchhhhhh-hhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833 270 CLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGRILCSDVG 313 (321)
Q Consensus 270 ~l~~~~a~~~s~~~-~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~ 313 (321)
.+++.+-+.+.++. .+.=+++.+.|+++.+|..+...++|..+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li 105 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALI 105 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHH
Confidence 89999999888884 889999999999999999899999998873
No 101
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=80.80 E-value=22 Score=32.79 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-----QLTFSILCSFFLL 82 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 82 (321)
+...++..+....+.=|.....-+.... ..+++..+.++--++.++.-.... +-....++ +.+.+-++.+++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHH
Confidence 4455666666666555555544444333 358888888877666665444332 21111111 2334445667788
Q ss_pred HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
.++|++.+.+.|+-++.-.+-.=+.+..+=-++.++++.+.++.++++. ||+|+.+-+-|+.+
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL 310 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence 8888888988888888776666666677777888999999999998776 46888888777655
No 102
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=79.06 E-value=39 Score=31.30 Aligned_cols=136 Identities=17% Similarity=0.076 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhhcCCC--------CCC---HHH
Q 020833 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKG----INKYVIIVYSDALSSLFFLFCSFLFHRSERP--------QLT---FSI 75 (321)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--------~~~---~~~ 75 (321)
..++.....+...-|.-+.+++..++.+ =+|+...+.=.-...+.++|....+.+.... ..+ ++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 4467777777888888888888877753 2466666665555666666654443322110 111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 76 ~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
...+.+.|.+.+.--.+.|.=+..++.-..++....-=+.+.+++..+.+|+++..+ |.|..++..|+..-
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN------~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLN------WLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhH------HHHHHHHHHHHHHh
Confidence 223333344333333344444555665555555555567788889999999998554 79999999998664
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=75.94 E-value=15 Score=32.41 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHH
Q 020833 13 PSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGC 87 (321)
Q Consensus 13 ~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~g~ 87 (321)
+|+++....+--+..-...|.-.+- +..-++-.+|.-+++..+++.+.+++...... -.+...+...++.|+...
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 4555555444444434444443221 35567899999999999999887765432111 122233445666777764
Q ss_pred HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
.-.++--|.++-++++.=+-..++.-.-.++.+.++++|+.+.. ++..+++|+...++..
T Consensus 236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 44567788999999888888887776667788888999998653 4788888887765654
No 104
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=68.25 E-value=33 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcC-ccchhhhHHHhhhccccccc
Q 020833 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD-AFCLGRILCSDVGKVQRRKD 320 (321)
Q Consensus 249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E-~~t~~~~iG~~l~~~~~~~~ 320 (321)
+..+..+.+.+.+.-|..-.+..||.|+++.+.... ..+.+.|.++..- -+-..-++|..+....|+||
T Consensus 33 l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~p~G~iiG~~~Ga~l~El~~~~~ 102 (140)
T PF04306_consen 33 LAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGA---IIGGIVGFFVLPPLGLIIGPFLGAFLGELLRGKD 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 444555666677888899999999999998887754 3466666666552 12234555666666666666
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=63.44 E-value=82 Score=28.97 Aligned_cols=137 Identities=14% Similarity=0.136 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHHH----HHHHHh-hhcC--CCCCCHHHHHHHH-
Q 020833 10 AALPSVGMVIVLLAQVSNMEVIKAAM-SKGINKYVIIVYSDALSSLFFL----FCSFLF-HRSE--RPQLTFSILCSFF- 80 (321)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~~~~K~~~-~~~~~p~~~~~~R~~~a~l~l~----~~~~~~-~~~~--~~~~~~~~~~~~~- 80 (321)
...+.++.+++.++=+...+.=..-+ .++++|.+.+.+.-+++..++. +..++. +++- .++.++.|+...+
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 35578888999999998888764433 3369999999999887754433 222221 1111 1344455554322
Q ss_pred --------HHHHHH-HHHHHHHHH-h---hcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhc
Q 020833 81 --------LLSVFG-CSSQIFSFV-G---IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 147 (321)
Q Consensus 81 --------~~g~~g-~~~~~~~~~-a---l~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~ 147 (321)
...+.+ ..+..+++. | -++.|++.=.++=..=-.++-+++...+.|++.. .|+.|.++-+.
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~l------lqilGFliLi~ 327 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHL------LQILGFLILIM 327 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHH------HHHHHHHHHHH
Confidence 223333 222222222 2 3566777766665555555566777788899875 46899999999
Q ss_pred hhhhh
Q 020833 148 GAFVV 152 (321)
Q Consensus 148 Gv~ll 152 (321)
|+.+.
T Consensus 328 Gi~lY 332 (372)
T KOG3912|consen 328 GIILY 332 (372)
T ss_pred HHHHH
Confidence 98664
No 106
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=62.68 E-value=31 Score=28.75 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHhhccccccccccchhhhhHHH-------hhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHH
Q 020833 120 AIIFRLEKLNWENKSSQAKSLGTFA-------SIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192 (321)
Q Consensus 120 ~~l~~~Er~~~~~~~~~~~~~g~~l-------~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa 192 (321)
+..-+-|-+-+|..|+.++.+|+.+ +..|+.++... ++.++.-.....+.++
T Consensus 83 v~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~---------------------~~~~f~qsv~~gf~a~ 141 (193)
T COG4657 83 VVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIN---------------------EGHNFLQSVVYGFGAA 141 (193)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhh---------------------hhhhHHHHHHHHhhhH
Confidence 3344566666666677777787764 55677776422 1223344566677888
Q ss_pred HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHH
Q 020833 193 FMNSAWFILQALILRKF-----AAVLIIMFYLFFFNTILSTAF 230 (321)
Q Consensus 193 ~~~a~~~vl~~~~~~~~-----~~~~~~~~~~~l~~~i~~~~~ 230 (321)
+.|++-.++-....+|. |.|..-..+.++.+++++..+
T Consensus 142 lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaF 184 (193)
T COG4657 142 LGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAF 184 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHH
Confidence 88888877765555543 233333445555555554443
No 107
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=53.28 E-value=34 Score=31.17 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhc--CC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhh
Q 020833 38 GINKYVIIVYSDALSSLFFLFCSFLFHRS--ER---PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLI 112 (321)
Q Consensus 38 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~ 112 (321)
+-+..+++++...++..+++..+...+.- .+ ...++|...+.++.++.+++...+..-=++.-.+..++.+...=
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 35567788888888888777655543321 11 13456667777777777755554444444555666655555555
Q ss_pred HHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhc
Q 020833 113 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (321)
Q Consensus 113 Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 155 (321)
--.|.+++++++.++++.+. -|-| .+...|+.+=+.+
T Consensus 297 KavTi~lSfllFsKPfT~qy-----~~~g-llv~lgI~Ln~ys 333 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQY-----VWSG-LLVVLGIYLNMYS 333 (367)
T ss_pred hHHHHHHHHHHHcCchHHHH-----hhhh-HHHHHHHHhhccc
Confidence 67889999999988887653 2444 4555888765443
No 108
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=53.25 E-value=2e+02 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 263 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 263 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
...+++.++.+.+|++..+...+-...+.++.+++++++++..|+...++
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~l 154 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVL 154 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33477889999999999999999999999999999999999999877665
No 109
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.30 E-value=2e+02 Score=24.75 Aligned_cols=13 Identities=8% Similarity=-0.491 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 020833 21 LLAQVSNMEVIKA 33 (321)
Q Consensus 21 ~~~wg~~~~~~K~ 33 (321)
+++.|....+++.
T Consensus 94 ~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 94 SLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHhhc
Confidence 4455666666663
No 110
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=40.12 E-value=44 Score=25.81 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833 15 VGMVIVLLAQVSNMEVIKAAMSKGINKY------VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS 88 (321)
Q Consensus 15 l~l~~~~~~wg~~~~~~K~~~~~~~~p~------~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~ 88 (321)
..++.+.++||...++.|.+-. +.+.. ...+.|-.. . .-++|++ .+... +.-.
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~--------------t--l~l~w~Y---~iPFl-lNqc 64 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMK--------------T--LFLNWEY---LIPFL-LNQC 64 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHH--------------H--HHHhHHH---HHHHH-HHHh
Confidence 4578889999999999998643 33321 111111110 0 1122332 22222 2223
Q ss_pred HHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833 89 SQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (321)
Q Consensus 89 ~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l 151 (321)
...+|+.-++.++-+.+.=..+ +.-.++++.+..+ +|+...++ .++|..+..+|+.+
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWL 122 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhh
Confidence 3457778888888777665554 4556777777766 67765553 36788777777654
No 111
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=37.10 E-value=2.6e+02 Score=26.34 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--CCCccccchhHHHHHHH
Q 020833 177 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE--PSDWKLGLDIGLVAVLY 254 (321)
Q Consensus 177 ~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~ 254 (321)
.+.+...|+++-.+++++-+.+.+=.|| .|+. +=...=..+.+++.++.-.+......+ .+-+...+...+.....
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kk-vk~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l 78 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKK-VKGW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFL 78 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhh-cCCc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHH-------hcCccchhhhHHHhh--------hccccc
Q 020833 255 SAVIGTGFRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVI-------VGDAFCLGRILCSDV--------GKVQRR 318 (321)
Q Consensus 255 ~g~~~t~~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~i-------l~E~~t~~~~iG~~l--------~~~~~~ 318 (321)
.|+ -=.++-..|-.++|++|.+ -.+...-+.-+++.++--++ ++++-....++|.++ +++-.+
T Consensus 79 ~G~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 79 FGV-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHH-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Q ss_pred ccC
Q 020833 319 KDH 321 (321)
Q Consensus 319 ~~~ 321 (321)
||+
T Consensus 158 Ke~ 160 (344)
T PF06379_consen 158 KEK 160 (344)
T ss_pred hhh
No 112
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=36.57 E-value=2.6e+02 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 020833 201 LQALILRKFAAVLIIMFYLFFFNTILSTAFALIV 234 (321)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~ 234 (321)
..|+..+|. |-...-.+..+...+......+..
T Consensus 120 ~~~~~~~R~-~~i~ag~~v~l~~~~~~l~~~l~~ 152 (194)
T PF07698_consen 120 SVRRIRSRS-DIIKAGLLVGLVNALMILALGLIQ 152 (194)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345656664 344434455555555555554443
No 113
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=35.03 E-value=47 Score=30.06 Aligned_cols=135 Identities=9% Similarity=0.054 Sum_probs=76.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-
Q 020833 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG- 86 (321)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g- 86 (321)
.|..++...++.++.+++.+.+.=..... ..|-.++...--++++++-.+- .++.|++...++|..-....++..+.
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~M 239 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTM 239 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHH
Confidence 35677888899999999999988888654 4888888888888888777666 44455544444543111111222222
Q ss_pred HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
++.+.+.-.=++..+++.-.+-.-+.-.|..++ ..++-++.|- -.++......|.++-
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 222222222334445443222223444454444 3345555543 355666666776554
No 114
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=33.94 E-value=3.1e+02 Score=27.24 Aligned_cols=48 Identities=2% Similarity=-0.090 Sum_probs=26.1
Q ss_pred HhhhhhhhHHHHHHHHHHH--hhccccc-cccccchhhhhHHHhhchhhhh
Q 020833 105 STAMLNLIPAFTFVLAIIF--RLEKLNW-ENKSSQAKSLGTFASIGGAFVV 152 (321)
Q Consensus 105 a~~l~~~~Pv~~~ll~~l~--~~Er~~~-~~~~~~~~~~g~~l~~~Gv~ll 152 (321)
++..++.+|+++++++.++ .-.|+.. ++.|+.-...++.+.++|+..+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~ 360 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFC 360 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6777889999888776532 2122211 1223334445555555555543
No 115
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=1.1e+02 Score=27.97 Aligned_cols=140 Identities=18% Similarity=0.098 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhc--CC--CCC-CHHHHHHHHHH
Q 020833 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGI-NKYVIIVYSDALSSLFFLFCSFLFHRS--ER--PQL-TFSILCSFFLL 82 (321)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~--~~~-~~~~~~~~~~~ 82 (321)
-.+.+.+.-+.+.+.=+.+.+-.|..+..-- .-+.+.+|--..+.++++|...+-+.- .+ ++. .++-|....+-
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 4677888888888888999999996543311 235688888899999998887653321 11 233 34445556667
Q ss_pred HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833 83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
|++|+.-.+...+=++.+|+-.=-+-...=..--.+++..+.+|..+.. .|-+..+-+.|...-..
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHH
Confidence 7887443334444455554432111111111223456677778886543 36678888888776654
No 116
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=28.43 E-value=1e+02 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.4
Q ss_pred cccchhhhhHHHhhchhhhhhh
Q 020833 133 KSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 133 ~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
+|.++++.|..+|++|+.++.+
T Consensus 83 ~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 83 RPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred CCcHHHhhhHHHHHhceeeeEe
Confidence 3567899999999999888763
No 117
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.40 E-value=97 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.6
Q ss_pred HhhcccchhhHhhhhhhhHHHHHHHHHHH
Q 020833 95 VGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123 (321)
Q Consensus 95 ~al~~~~a~~a~~l~~~~Pv~~~ll~~l~ 123 (321)
.|+..-+.-.++.+.|+.|+++.+++.++
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778889999999999998887655
No 118
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=22.21 E-value=6.8e+02 Score=24.99 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=28.8
Q ss_pred HhhhhhhhHHHHHHHHH----HHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833 105 STAMLNLIPAFTFVLAI----IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 105 a~~l~~~~Pv~~~ll~~----l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
.+..++..|+++++++. ++.+.-- .++.|+-....|+.+.++|...+..
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~-~~~~ps~~~KFalGl~l~g~~fl~l 378 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGR-GNKQPSTPIKFALGLILAGLGFLIL 378 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhc-CCCCCCcchHHHHHHHHHHHHHHHH
Confidence 56677899998888764 3332111 1233444456777777777666543
No 119
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=22.10 E-value=5.1e+02 Score=22.22 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHhhcccccc-----ccc--cchhhhhHHHhhchhhhhh
Q 020833 110 NLIPAFTFVLAIIFRLEKLNWE-----NKS--SQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 110 ~~~Pv~~~ll~~l~~~Er~~~~-----~~~--~~~~~~g~~l~~~Gv~ll~ 153 (321)
...|....++.+...+||.... +|. ...+..+.++.++|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 4667877888888877776321 122 2234778888889987764
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=20.92 E-value=96 Score=23.95 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=18.9
Q ss_pred HHHHHHHhcCccchhhhHHHhh
Q 020833 291 IVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 291 ~i~~~~il~E~~t~~~~iG~~l 312 (321)
..++++.+||++++..+.|.++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~ 98 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLC 98 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHH
Confidence 4567889999999999999876
No 121
>COG2246 Predicted membrane protein [Function unknown]
Probab=20.60 E-value=2.7e+02 Score=22.41 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhhHhhhhhhhHHHHHHHHHHHhhcccccccc
Q 020833 72 TFSILCSFFLLSVFGCSSQIFSFVGIQY---SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENK 133 (321)
Q Consensus 72 ~~~~~~~~~~~g~~g~~~~~~~~~al~~---~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~ 133 (321)
..++..+....|.++++-+...++-+.+ .+...|.++.+..- ++..++.+++.+.+.+
T Consensus 9 ~~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~~----ii~sf~~N~~wTF~~~ 69 (139)
T COG2246 9 TLSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEAA----IIFSFVLNRRWTFRDR 69 (139)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH----HHHHHHHHceeeEeec
Confidence 3456777888899984444444444433 44555555444333 3333445777777765
Done!