Query 020833
Match_columns 321
No_of_seqs 108 out of 1272
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.3 8.9E-07 3E-11 70.9 6.1 58 255-312 35-93 (137)
2 3b5d_A Multidrug transporter E 98.1 8.7E-06 3E-10 62.7 7.4 58 255-312 35-93 (110)
3 2i68_A Protein EMRE; transmemb 98.0 1E-05 3.5E-10 64.7 6.0 68 81-154 34-103 (137)
4 3b5d_A Multidrug transporter E 97.9 2.6E-05 8.7E-10 60.0 6.6 67 81-153 34-102 (110)
5 2hac_A T-cell surface glycopro 6.6 3.1E+02 0.011 15.5 2.0 15 116-130 16-30 (33)
6 2h3o_A MERF; membrane protein, 6.0 79 0.0027 20.8 -0.9 12 284-295 11-22 (61)
7 4dx5_A Acriflavine resistance 3.8 2E+03 0.07 22.1 7.6 51 262-312 883-933 (1057)
8 4dx5_A Acriflavine resistance 3.2 1.6E+03 0.056 22.8 6.2 16 294-309 382-397 (1057)
9 2v50_A Multidrug resistance pr 3.0 1.8E+03 0.062 22.5 6.3 61 252-312 340-400 (1052)
10 3tij_A NUPC family protein; me 2.9 2.4E+03 0.082 19.3 6.3 54 46-107 9-62 (424)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.30 E-value=8.9e-07 Score=70.94 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhcccCcchhhhh-hhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 255 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 255 ~g~~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.++++++++|.+|.+++|+.+++++.++ ..+.|+++.++|++++||++|+.+++|+++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~L 93 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML 93 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4677899999999999999999999998 899999999999999999999999999988
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.08 E-value=8.7e-06 Score=62.71 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCcchhhhh-hhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 255 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 255 ~g~~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
.++++.+.+|.++.+++|+.+.+.+.++ ..+.|+++.+.|++++||++|..+++|.++
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~l 93 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4566788999999999999999999888 799999999999999999999999999888
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.97 E-value=1e-05 Score=64.69 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=50.3
Q ss_pred HHHHHH-HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (321)
Q Consensus 81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 154 (321)
+.+++. .++++++..++++.+++.+..+ .++.|++++++++++++|+++++ +++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456665 7888999999999999999888 79999999999999999999876 48999999999988764
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.88 E-value=2.6e-05 Score=60.04 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHHH-HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (321)
Q Consensus 81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~ 153 (321)
..++++ ..++.++..++++.|.+.+..+ ..+.|++++++++++++|+++.+ |++|+.+.++|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 455555 7888899999999999999888 68999999999999999999765 5899999999998875
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.58 E-value=3.1e+02 Score=15.54 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.8
Q ss_pred HHHHHHHHhhccccc
Q 020833 116 TFVLAIIFRLEKLNW 130 (321)
Q Consensus 116 ~~ll~~l~~~Er~~~ 130 (321)
.+++-.++.+||++.
T Consensus 16 gii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 16 GVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 345556677888764
No 6
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=6.02 E-value=79 Score=20.84 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=2.8
Q ss_pred hhHHHHHHHHHH
Q 020833 284 PLAIVFSIVMDV 295 (321)
Q Consensus 284 ~l~Pv~a~i~~~ 295 (321)
...|+.++++|.
T Consensus 11 C~tPvLvil~G~ 22 (61)
T 2h3o_A 11 SFTPVLVILLGV 22 (61)
T ss_dssp -----CHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334444444433
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=3.81 E-value=2e+03 Score=22.09 Aligned_cols=51 Identities=6% Similarity=-0.213 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 262 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+-|.+.....+........++.....+.+.+.+..++|.+++...++|.++
T Consensus 883 ~i~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~ 933 (1057)
T 4dx5_A 883 VVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLT 933 (1057)
T ss_dssp HHHHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHH
Confidence 334444445555555555555555566777888889999999999988765
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=3.21 E-value=1.6e+03 Score=22.85 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=6.8
Q ss_pred HHHHhcCccchhhhHH
Q 020833 294 DVVIVGDAFCLGRILC 309 (321)
Q Consensus 294 ~~~il~E~~t~~~~iG 309 (321)
...++|.+++...++|
T Consensus 382 ~l~~~g~~ln~~sl~g 397 (1057)
T 4dx5_A 382 VLAAFGFSINTLTMFG 397 (1057)
T ss_dssp HHHHTTCCBCHHHHHH
T ss_pred HHHHhCCcHHHHHHHH
Confidence 3334444444444443
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=2.99 E-value=1.8e+03 Score=22.50 Aligned_cols=61 Identities=5% Similarity=-0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 252 VLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 252 l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
+......+..+.+.+....++......+..+.....+.+.+....++|.+++...++|.++
T Consensus 340 ~~~~~~~~~~lv~lvl~~~~~s~~~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s~~gl~~ 400 (1052)
T 2v50_A 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVL 400 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
No 10
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=2.94 E-value=2.4e+03 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhh
Q 020833 46 VYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA 107 (321)
Q Consensus 46 ~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~ 107 (321)
..|.+++.+.++.+++...++++ +.+||.....+.+ |+..-+-+-+++.+...+
T Consensus 9 ~l~sl~Gi~v~l~ia~l~S~nrk-~I~wr~V~~gl~l-------Q~~la~~vL~~~~G~~~~ 62 (424)
T 3tij_A 9 LFMSLIGMAVLLGIAVLLSSNRK-AINLRTVGGAFAI-------QFSLGAFILYVPWGQELL 62 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCGG-GCCHHHHHHHHHH-------HHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc-cCChHHHHHHHHH-------HHHHHHHHhcchHHHHHH
Done!