Query 020833
Match_columns 321
No_of_seqs 108 out of 1272
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 08:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 17.3 62 0.0045 15.8 2.8 19 182-200 2-20 (27)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 14.2 1.6E+02 0.012 19.2 6.2 35 285-321 69-103 (103)
3 d1iwga8 f.35.1.1 (A:513-566,A: 8.1 3.9E+02 0.028 19.8 12.2 43 270-312 77-119 (222)
4 d1zs4a1 a.35.1.9 (A:4-81) Regu 5.9 1E+02 0.0074 19.4 1.2 26 1-26 30-59 (78)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 3.3 3.3E+02 0.024 13.3 3.7 15 45-59 4-18 (30)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 2.6 1.1E+03 0.078 17.8 20.4 15 40-54 115-129 (447)
7 d1ppjd2 f.23.11.1 (D:196-241) 2.2 4.9E+02 0.036 14.3 2.0 19 47-65 11-29 (46)
8 d2p7tc1 f.14.1.1 (C:86-119) Po 2.1 5.1E+02 0.037 12.9 1.6 9 118-126 25-33 (34)
9 d1q90a3 f.23.23.1 (A:248-292) 1.7 7.4E+02 0.054 13.5 4.4 29 181-209 4-32 (45)
10 d1oywa1 a.4.5.43 (A:407-516) D 1.7 7.2E+02 0.053 15.8 2.5 29 290-318 12-40 (110)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.33 E-value=62 Score=15.82 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 020833 182 ILGGFFLAAEAFMNSAWFI 200 (321)
Q Consensus 182 ~~G~~l~l~aa~~~a~~~v 200 (321)
.+|.+..-++.++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3577788888889988763
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.21 E-value=1.6e+02 Score=19.15 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhcCccchhhhHHHhhhcccccccC
Q 020833 285 LAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRRKDH 321 (321)
Q Consensus 285 l~Pv~a~i~~~~il~E~~t~~~~iG~~l~~~~~~~~~ 321 (321)
+.-++.++.|..++.-. ...+......+.|+||.|
T Consensus 69 ~~~~~~~~~Gi~~~~~~--~~~i~~~~~~~~~~rr~h 103 (103)
T d1r3jc_ 69 CVAVVVMVAGITSFGLV--TAALATWFVGREQERRGH 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Confidence 33444555555554221 223334444667777777
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.14 E-value=3.9e+02 Score=19.77 Aligned_cols=43 Identities=7% Similarity=-0.159 Sum_probs=27.8
Q ss_pred HhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833 270 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV 312 (321)
Q Consensus 270 ~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l 312 (321)
..+............-.-+.+.+.+..+.|.+++....+|.++
T Consensus 77 ~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~ 119 (222)
T d1iwga8 77 LYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLT 119 (222)
T ss_dssp TTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccc
Confidence 3344443333333333335667788889999999998888777
No 4
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=5.89 E-value=1e+02 Score=19.42 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCchhhhhhhHH----HHHHHHHHHHHHH
Q 020833 1 MGVDMGSMRAALP----SVGMVIVLLAQVS 26 (321)
Q Consensus 1 ~~~~~~~~~~~~~----~l~l~~~~~~wg~ 26 (321)
||+|-++.+|||. -..|.++.+=||.
T Consensus 30 mGv~esqiSRwK~~f~~q~smlLAvLE~GV 59 (78)
T d1zs4a1 30 VGVDKSQISRWKRDWIPKFSMLLAVLEWGV 59 (78)
T ss_dssp HTSCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 6888888888773 4455555555553
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.34 E-value=3.3e+02 Score=13.26 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020833 45 IVYSDALSSLFFLFC 59 (321)
Q Consensus 45 ~~~R~~~a~l~l~~~ 59 (321)
..|-+.+|+++-+.+
T Consensus 4 i~yv~ifac~i~lff 18 (30)
T d2axtt1 4 ITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHH
Confidence 455666777764443
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.61 E-value=1.1e+03 Score=17.81 Aligned_cols=15 Identities=13% Similarity=-0.071 Sum_probs=9.2
Q ss_pred ChHHHHHHHHHHHHH
Q 020833 40 NKYVIIVYSDALSSL 54 (321)
Q Consensus 40 ~p~~~~~~R~~~a~l 54 (321)
+...+...|++.+..
T Consensus 115 ~~~~~~~~~~~~g~~ 129 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWF 129 (447)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 345677777766543
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.24 E-value=4.9e+02 Score=14.34 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 020833 47 YSDALSSLFFLFCSFLFHR 65 (321)
Q Consensus 47 ~R~~~a~l~l~~~~~~~~~ 65 (321)
++..+...++..+.++.+|
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555454444
No 8
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=2.07 E-value=5.1e+02 Score=12.85 Aligned_cols=9 Identities=11% Similarity=0.036 Sum_probs=3.9
Q ss_pred HHHHHHhhc
Q 020833 118 VLAIIFRLE 126 (321)
Q Consensus 118 ll~~l~~~E 126 (321)
+.-|+..+|
T Consensus 25 ~atwfvgre 33 (34)
T d2p7tc1 25 LATWFVGRE 33 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhccc
Confidence 334444444
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.75 E-value=7.4e+02 Score=13.49 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020833 181 WILGGFFLAAEAFMNSAWFILQALILRKF 209 (321)
Q Consensus 181 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~ 209 (321)
...|.+..+.+.+.--+..++-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777666666676666555554
No 10
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=1.66 E-value=7.2e+02 Score=15.78 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCccchhhhHHHhhhccccc
Q 020833 290 SIVMDVVIVGDAFCLGRILCSDVGKVQRR 318 (321)
Q Consensus 290 a~i~~~~il~E~~t~~~~iG~~l~~~~~~ 318 (321)
-++-.+.-.+|+++...++-...|+.+.|
T Consensus 12 ~iLs~V~~~~~rfg~~~ivdiL~Gs~~~k 40 (110)
T d1oywa1 12 IALSTIGRVNQRFGMGYVVEVIRGANNQR 40 (110)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHhcCccCcceehhhHhcCccHH
Confidence 44555667799999999999999888764
Done!