Query 020834
Match_columns 321
No_of_seqs 221 out of 870
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2.6E-61 5.5E-66 449.8 15.0 296 4-321 111-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 5.7E-34 1.2E-38 276.5 22.4 284 2-313 96-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 1.5E-25 3.4E-30 213.2 17.6 213 3-316 103-320 (321)
4 PRK09903 putative transporter 99.9 7.6E-25 1.6E-29 208.0 18.7 208 4-316 101-310 (314)
5 COG0679 Predicted permeases [G 99.9 5.7E-24 1.2E-28 201.8 16.4 209 3-318 99-309 (311)
6 TIGR00841 bass bile acid trans 98.8 1.5E-08 3.3E-13 95.3 8.8 107 204-318 13-122 (286)
7 TIGR00832 acr3 arsenical-resis 98.0 8.8E-05 1.9E-09 71.2 13.3 140 161-318 10-158 (328)
8 PF01758 SBF: Sodium Bile acid 98.0 5E-05 1.1E-09 66.9 10.6 107 205-318 4-113 (187)
9 COG0385 Predicted Na+-dependen 98.0 8.1E-05 1.8E-09 70.6 11.4 109 202-318 41-152 (319)
10 PF13593 DUF4137: SBF-like CPA 97.3 0.0014 3E-08 62.5 9.8 144 161-317 1-147 (313)
11 COG0798 ACR3 Arsenite efflux p 95.2 0.47 1E-05 45.5 13.1 137 163-319 20-167 (342)
12 PF04172 LrgB: LrgB-like famil 80.7 28 0.0006 31.5 11.2 137 157-312 17-154 (215)
13 PRK10711 hypothetical protein; 76.9 44 0.00096 30.6 11.3 137 157-312 28-165 (231)
14 COG1346 LrgB Putative effector 76.2 30 0.00065 31.6 9.9 136 158-313 31-168 (230)
15 PRK03659 glutathione-regulated 70.7 1.1E+02 0.0023 32.0 13.9 118 192-316 258-376 (601)
16 PRK03562 glutathione-regulated 69.7 1.2E+02 0.0026 31.7 14.1 118 192-316 261-379 (621)
17 TIGR00659 conserved hypothetic 64.6 1.1E+02 0.0025 27.8 11.6 135 157-311 27-163 (226)
18 PRK04288 antiholin-like protei 62.5 1.3E+02 0.0028 27.6 12.1 136 157-312 33-170 (232)
19 TIGR03082 Gneg_AbrB_dup membra 61.2 89 0.0019 26.4 9.4 28 269-296 107-136 (156)
20 COG3180 AbrB Putative ammonia 60.5 81 0.0017 30.7 9.8 81 208-295 63-146 (352)
21 PF03601 Cons_hypoth698: Conse 53.8 1.6E+02 0.0034 28.1 10.6 51 158-218 24-75 (305)
22 KOG4821 Predicted Na+-dependen 51.0 45 0.00098 30.3 5.9 83 226-314 82-165 (287)
23 PRK03562 glutathione-regulated 48.0 1.9E+02 0.0042 30.3 11.1 115 156-288 24-139 (621)
24 PF03812 KdgT: 2-keto-3-deoxyg 43.1 3.1E+02 0.0067 26.3 11.1 98 192-297 38-142 (314)
25 PLN03159 cation/H(+) antiporte 42.4 4.9E+02 0.011 28.4 14.2 125 156-288 62-193 (832)
26 KOG2718 Na+-bile acid cotransp 39.6 29 0.00062 34.1 3.2 104 207-318 121-228 (371)
27 PRK12460 2-keto-3-deoxyglucona 38.2 1.8E+02 0.0039 27.9 8.2 82 204-293 50-133 (312)
28 COG3329 Predicted permease [Ge 38.0 1.4E+02 0.003 28.8 7.3 54 157-218 213-266 (372)
29 PRK03659 glutathione-regulated 36.9 4.5E+02 0.0098 27.4 11.8 115 156-288 24-139 (601)
30 PF05145 AmoA: Putative ammoni 36.4 3.8E+02 0.0082 25.5 10.3 81 207-294 29-112 (318)
31 KOG1397 Ca2+/H+ antiporter VCX 26.9 6E+02 0.013 25.4 9.8 142 163-309 78-243 (441)
32 COG2855 Predicted membrane pro 22.5 5.8E+02 0.012 24.8 8.8 48 161-218 38-85 (334)
33 TIGR00932 2a37 transporter, mo 21.6 6.1E+02 0.013 23.0 12.1 116 156-288 11-127 (273)
34 TIGR00793 kdgT 2-keto-3-deoxyg 20.9 2.3E+02 0.0051 27.1 5.6 95 192-294 38-139 (314)
35 PRK10669 putative cation:proto 20.0 9.4E+02 0.02 24.5 12.4 142 156-315 25-171 (558)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-61 Score=449.83 Aligned_cols=296 Identities=39% Similarity=0.704 Sum_probs=240.1
Q ss_pred eEEEecCCCCchHHHHHHHhhcCCCCCCCChhHHHHhHHHHHHHHHHhhhhheeceeeecccCCCCCC-cccccCCCCcc
Q 020834 4 NIENFTGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGT-FDIDEESLPIK 82 (321)
Q Consensus 4 ~a~~~f~N~gsLPl~Li~sL~~~~~~p~g~~~~~~~rg~~Y~~~~~~vg~~l~ws~g~~ll~~~~~~~-~~~~~~~~~~~ 82 (321)
+|||+|||+||||++|++|+|+++++||||+|.|.+||++|++++|++|++++||||||++.+++.+. .+.++++- +
T Consensus 111 ia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~~p~~~~~~~~~~~~V--e 188 (408)
T KOG2722|consen 111 IACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLLPPNLELMSALKESPV--E 188 (408)
T ss_pred EEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeecCCchhhhhcCChhhh--h
Confidence 58999999999999999999999999999999999999999999999999999999999998874321 11111100 0
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcchhhHHHHHHHHHhhhhhhhcCh
Q 020834 83 NSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQP 162 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~nP 162 (321)
+.. ++.| .++ ...++|++++++++.+.++++++. ...+.+.+++.+....+..+|++++|
T Consensus 189 ~~~-------~~~~-----~~s-------~e~~~~~~~k~~ll~~~en~~~~~-~g~~~~~~~~~~~~~~~~~L~~i~~P 248 (408)
T KOG2722|consen 189 ALL-------ESVP-----QPS-------VESDEDSTCKTLLLASKENRNNQV-VGREGKVKRRSVSLSEKVILKEIFAP 248 (408)
T ss_pred hhh-------hccC-----CCC-------cccccccccccccccccccCCCce-eeccccceEEEeehhHHhhHHHhcCc
Confidence 000 0011 000 011112223333333333322211 11222222233333344558999999
Q ss_pred hHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHH
Q 020834 163 PIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVP 242 (321)
Q Consensus 163 ~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P 242 (321)
|++|+++|++++.+||||+++|++++|+++++|+++++|++++|+.++++|++|.++++++.++.+.+++++++|++++|
T Consensus 249 ptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP 328 (408)
T KOG2722|consen 249 PTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLP 328 (408)
T ss_pred hHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 020834 243 PAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLNLMF 321 (321)
Q Consensus 243 ~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~~~~~ 321 (321)
+++++++..+.++|+++.+||+|++|+++|.++|||+++.++||++|.. +|||.+++|+|+++.+.+++|+++|+|+++
T Consensus 329 ~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 329 LVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred hhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999966999999999999999999999999999999 999999999999999999999999999874
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.7e-34 Score=276.45 Aligned_cols=284 Identities=30% Similarity=0.457 Sum_probs=193.5
Q ss_pred CceEEEecCCCCchHHHHHHHhhcCCCCCCCChhHHHHhHHHHHHHHHHhhhhheeceeeecccCCCCCCcccccCCCCc
Q 020834 2 GFNIENFTGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPI 81 (321)
Q Consensus 2 ~~~a~~~f~N~gsLPl~Li~sL~~~~~~p~g~~~~~~~rg~~Y~~~~~~vg~~l~ws~g~~ll~~~~~~~~~~~~~~~~~ 81 (321)
.+..||+|+|++++|+++++++ +| ++|++|+.++.++++++.|++|+.++..++++.++.++++...
T Consensus 96 ~~~~~~~~~N~~~lglpi~~~l-------~g------~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 162 (385)
T PF03547_consen 96 VFVLAASFGNTGFLGLPILQAL-------FG------ERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSA 162 (385)
T ss_pred EEEecccCCcchhhHHHHHHHH-------hc------chhhhhehHHHHhhHHHHHHHHHHhhccccccccccccccccc
Confidence 3577899999999999999999 55 4999999999999999999999999997654422222111100
Q ss_pred cC--CCCCCCCCC---CCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcchhhHHHHHHHHHhhhh
Q 020834 82 KN--SSKDATPAP---EQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKL 156 (321)
Q Consensus 82 ~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (321)
+. +++++.++. ++.+...++....++.. +..+...++++++... ...++ +.++..+.+..+..+....+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 239 (385)
T PF03547_consen 163 ESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSP-SSTPSQSSASAPSSVS-TSPSP-SNSTGAEQKSSNSTRKKLKKSIL 239 (385)
T ss_pred ccccccccCCccccCCcccccccccccccCCcc-cccccccccccchhhc-cCCcc-cccchhhhhhhhhHHHHHHHHHH
Confidence 00 000000000 00000000000000000 0000000000000000 00000 11111222222333333333346
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHH
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFG 236 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 236 (321)
|.++||+++|+++|++++++|+.+++++. .++.++++++|++++|++|+++|++|++.+.....+++.....++.
T Consensus 240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~ 314 (385)
T PF03547_consen 240 KLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLV 314 (385)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHH
Confidence 88899999999999999999998887665 7899999999999999999999999998644555667777778999
Q ss_pred HHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 020834 237 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWI 313 (321)
Q Consensus 237 Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~ 313 (321)
|++++|++++++++++. . |+....++++++++|+|++..++|++||.+ +++|..++|||+++++|+|+|+
T Consensus 315 rlii~P~i~~~~~~~~~------l-~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 315 RLIILPLIGIGIVFLLG------L-DGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHHC------C-CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999988532 2 777888999999999999999999999999 9999999999999999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.93 E-value=1.5e-25 Score=213.17 Aligned_cols=213 Identities=22% Similarity=0.281 Sum_probs=167.6
Q ss_pred ceEEEecCCCCchHHHHHHHhhcCCCCCCCChhHHHHhH---HHHHHHHHHhhhhheeceeeecccCCCCCCcccccCCC
Q 020834 3 FNIENFTGNIGNVPLVLIAALCRDPSNPFAEPETCSTQM---TAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESL 79 (321)
Q Consensus 3 ~~a~~~f~N~gsLPl~Li~sL~~~~~~p~g~~~~~~~rg---~~Y~~~~~~vg~~l~ws~g~~ll~~~~~~~~~~~~~~~ 79 (321)
+..++.|+|++++.+++++++ || ++| ..|...+.....++.|++|+.+....+.+ .
T Consensus 103 ~~~~~~~~N~~~~GlPl~~~~-------~G------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--- 161 (321)
T TIGR00946 103 FLLVSALPNTAFIGYPLLLSL-------FG------EEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAG-----G--- 161 (321)
T ss_pred HHHHhhhccceeehHHHHHHH-------hc------ccchhhhHHHHHHHhccchhHHHHHHHHhcccccc-----c---
Confidence 456789999999999999999 77 344 77888888888899999998655322100 0
Q ss_pred CccCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcchhhHHHHHHHHHhhhhhhh
Q 020834 80 PIKNSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQI 159 (321)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l 159 (321)
+ +++ ++.++..++.+ .|.+
T Consensus 162 ---------------------------------------------------~--~~~----~~~~~~~~~~~----~~~~ 180 (321)
T TIGR00946 162 ---------------------------------------------------E--GSG----ESTRLMLIFVW----KKLI 180 (321)
T ss_pred ---------------------------------------------------c--ccc----hhHHHHHHHHH----HHHH
Confidence 0 000 01111111111 2455
Q ss_pred cChhHHHHHHHHHHhhhhhhhhhhccCCCcc-hhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHH
Q 020834 160 LQPPIIASILAMGIGAVPFLKKLIFTDDAPL-FFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRL 238 (321)
Q Consensus 160 ~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l-~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rl 238 (321)
+||+++|+++|+++..++ .++ .++.++++++|++++|++|+++|+.+... +.+.+++.++..+++|+
T Consensus 181 ~nP~iia~i~Gl~~~~~~----------i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVG----------FKMPGLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDAILALIVRF 248 (321)
T ss_pred hCCChHHHHHHHHHHHHh----------hcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHHHHHHHHHH
Confidence 799999999999999875 334 69999999999999999999999999763 22334678899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 239 VLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILY 316 (321)
Q Consensus 239 il~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~ 316 (321)
++.|++++.+... ++. |+..+.++++++|||+|.+..++|++||.| +++++.+++||++|++|+|+|+.++
T Consensus 249 il~P~i~~~~~~~------~~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 249 LVQPAVMAGISKL------IGL-RGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHHH------hCC-ChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887653 344 788899999999999999999999999999 9999999999999999999999864
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.93 E-value=7.6e-25 Score=208.00 Aligned_cols=208 Identities=16% Similarity=0.145 Sum_probs=162.1
Q ss_pred eEEEecCCCCchHHHHHHHhhcCCCCCCCChhHHHHhHHHHHHHHHHhhhhheeceeeecccCCCCCCcccccCCCCccC
Q 020834 4 NIENFTGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIKN 83 (321)
Q Consensus 4 ~a~~~f~N~gsLPl~Li~sL~~~~~~p~g~~~~~~~rg~~Y~~~~~~vg~~l~ws~g~~ll~~~~~~~~~~~~~~~~~~~ 83 (321)
..+++++|+|++.+++++++ ||+... -|+.|..++. ++|++.|++|..+++..+.+ +
T Consensus 101 ~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~~-~~~~~~~~~g~~~~~~~~~~----~-------- 157 (314)
T PRK09903 101 ALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIISI-IVNAITIPIGLYLLNPSSGA----D-------- 157 (314)
T ss_pred hhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHHH-HHHHHHHHHHHHHHcccccc----c--------
Confidence 34678899999999999999 773211 1555555544 68999999998888643100 0
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcchhhHHHHHHHHHhhhhhhhcChh
Q 020834 84 SSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQPP 163 (321)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~nP~ 163 (321)
+ + + +..++.+ .+.++||+
T Consensus 158 -----------------------------------------------~--~-~----~~~~~~l--------~~~~~nP~ 175 (314)
T PRK09903 158 -----------------------------------------------G--K-K----NSNLSAL--------ISAAKEPV 175 (314)
T ss_pred -----------------------------------------------c--c-c----chHHHHH--------HHHHhchH
Confidence 0 0 0 0001122 14467999
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCCcc-hhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHH
Q 020834 164 IIASILAMGIGAVPFLKKLIFTDDAPL-FFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVP 242 (321)
Q Consensus 164 iia~i~g~ii~~ip~l~~~f~~~~~~l-~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P 242 (321)
++|+++|+++.+.+ .++ .++.++++++|++++|++|+++|++|++. +. +. .+..+...+.|+++.|
T Consensus 176 iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~-~~-~~-~~~~~~~~~~Kli~~P 242 (314)
T PRK09903 176 VWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAH-KF-EF-SAEIAYNTFLKLILMP 242 (314)
T ss_pred HHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-cc-cHHHHHHHHHHHHHHH
Confidence 99999999998753 444 69999999999999999999999999984 22 22 3567788999999999
Q ss_pred HHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 243 PAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILY 316 (321)
Q Consensus 243 ~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~ 316 (321)
++.+.+... .+. |+....++++++|||+|.+..++|++||.| +.+++.++.||++|++|+|+|++++
T Consensus 243 ~i~~~~~~~------~~l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 243 LALLLVGMA------CHL-NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHH------cCC-CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999776553 243 778899999999999999999999999999 9999999999999999999999874
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=201.84 Aligned_cols=209 Identities=24% Similarity=0.286 Sum_probs=175.2
Q ss_pred ceEEEecCCCCchHHHHHHHhhcCCCCCCCChhHHHHhHHHHHHHHHHhhhhheeceeeecccCCCCCCcccccCCCCcc
Q 020834 3 FNIENFTGNIGNVPLVLIAALCRDPSNPFAEPETCSTQMTAYISFGQWVGAIILYTYVFHMLAPPPEGTFDIDEESLPIK 82 (321)
Q Consensus 3 ~~a~~~f~N~gsLPl~Li~sL~~~~~~p~g~~~~~~~rg~~Y~~~~~~vg~~l~ws~g~~ll~~~~~~~~~~~~~~~~~~ 82 (321)
+..+.+|+|+|++++++..++ +| ++|++|..+|..+++++.|++|+..+...+++
T Consensus 99 ~~~~~~~~N~g~lg~pi~~~~-------~G------~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------------ 153 (311)
T COG0679 99 FALASAFPNIGFLGLPVALSL-------FG------EKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------------ 153 (311)
T ss_pred HHHHHHhcccchhhHHHHHHH-------cC------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------
Confidence 556789999999999999999 88 79999999999999999999999999764311
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCcchhhHHHHHHHHHhhhhhhhcCh
Q 020834 83 NSSKDATPAPEQIPLLTEEAEPKDSNNPKRGKDATPATEQIPLLIEEAEPKDSKNPKRGKIAEVLIFIYEKLKLKQILQP 162 (321)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~nP 162 (321)
+ + ...++.. .+.+.||
T Consensus 154 ---------------------------------------------------~-~----~~~~~~~--------~~~~~nP 169 (311)
T COG0679 154 ---------------------------------------------------T-N----KSLLSVL--------KKLLTNP 169 (311)
T ss_pred ---------------------------------------------------c-h----hHHHHHH--------HHHHhCc
Confidence 0 0 0111111 2566799
Q ss_pred hHHHHHHHHHHhhhhhhhhhhccCCCcc-hhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHH
Q 020834 163 PIIASILAMGIGAVPFLKKLIFTDDAPL-FFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLV 241 (321)
Q Consensus 163 ~iia~i~g~ii~~ip~l~~~f~~~~~~l-~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~ 241 (321)
+++|.++|+++...+ ..+ .++.++++++|++++|++|+++|++|+. .+.++...+.++.....|+++.
T Consensus 170 ~i~a~i~g~~~~~~~----------i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~ 238 (311)
T COG0679 170 LIIALILGLLLNLLG----------ISLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLA 238 (311)
T ss_pred HHHHHHHHHHHHHcC----------CCCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHH
Confidence 999999999999864 333 5999999999999999999999999998 3455566777777888899999
Q ss_pred HHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 242 PPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 242 P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~~ 318 (321)
|++++.+.++ ++. ++....+++++.|||+|.+..++|++||.| +.++..++.||++|++|+|.|..++.+
T Consensus 239 Pl~~~~~~~~------~~l-~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 239 PLVALLVAKL------LGL-SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHH------cCC-ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998764 233 666679999999999999999999999999 999999999999999999999887765
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.81 E-value=1.5e-08 Score=95.27 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=90.0
Q ss_pred hhHHHHHHhhhhhcCCCCCCC-c-CchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHH
Q 020834 204 MIPCILLALGGNLVDGPGSAK-L-GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLS 281 (321)
Q Consensus 204 ~vPl~livlG~~L~~~~~~~~-~-~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~ 281 (321)
...+.|+.+|+++... +.++ . +.+.+....+.|++++|++++.+.+. ++. ||.....+++.+++|+|.+.
T Consensus 13 ~l~~~m~~~G~~l~~~-~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l-~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFE-DFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKL-PPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHccCCCcHH-HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCC-CHHHHHHHHheeeCCCchHH
Confidence 3677899999998763 2222 1 34677788889999999999888763 233 88899999999999999999
Q ss_pred HHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 282 GAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 282 ~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~~ 318 (321)
.++++++|.| +.++..+..+|++|++|+|+|+.++..
T Consensus 85 ~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 85 NVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 888999999999999999999998865
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.03 E-value=8.8e-05 Score=71.22 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=99.3
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHH------HHHHhhhhhcCCCCCCC--cCchHHHH
Q 020834 161 QPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPC------ILLALGGNLVDGPGSAK--LGFRTTAA 232 (321)
Q Consensus 161 nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl------~livlG~~L~~~~~~~~--~~~~~i~~ 232 (321)
...++++++|++++..-| ....+.... .+.....|+ .|+.+|.++... +.++ .++|.+..
T Consensus 10 ~~~~~~~i~~~~~g~~~P---------~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~-df~~~~~~pk~~~~ 77 (328)
T TIGR00832 10 LWIFLAIAAGVGLGVLFP---------SVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYS-ALGDVFKDPKGLIL 77 (328)
T ss_pred HHHHHHHHHHHHHHHhcc---------ccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHH-HHHHHHcCchHHHH
Confidence 345677777888877432 111222111 223455553 566666666442 2111 14688999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHH
Q 020834 233 IIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAG 311 (321)
Q Consensus 233 ~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi 311 (321)
..+.-++++|++++.+.+. +++. +|.+..-+++.+++|.+.....++...++| .........+++++++++|.
T Consensus 78 ~~~~qfvi~Plla~~l~~l-----~~~~-~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~ 151 (328)
T TIGR00832 78 SLFINWIIGPFLMFLLAWL-----FLRD-LFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAP 151 (328)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HcCC-CHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764 2243 777888899999999999999999999999 76666678999999999999
Q ss_pred HHHHHHH
Q 020834 312 WIILYLN 318 (321)
Q Consensus 312 ~~~l~~~ 318 (321)
++.++..
T Consensus 152 l~~ll~~ 158 (328)
T TIGR00832 152 LAWLLLG 158 (328)
T ss_pred HHHHHHh
Confidence 9887754
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.02 E-value=5e-05 Score=66.91 Aligned_cols=107 Identities=16% Similarity=0.250 Sum_probs=78.8
Q ss_pred hHHHHHHhhhhhcCCCCCCCc--CchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHH
Q 020834 205 IPCILLALGGNLVDGPGSAKL--GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSG 282 (321)
Q Consensus 205 vPl~livlG~~L~~~~~~~~~--~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~ 282 (321)
+-+.|+.+|.++... +.++. +.+.+....+..++++|++++.+.+. +++. +|.+..-+++.+++|.+....
T Consensus 4 l~~~mf~~gl~~~~~-~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~-----~~~~-~~~~~~Gl~l~~~~P~~~~s~ 76 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFE-DLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWL-----LLPL-SPALALGLLLVAACPGGPASN 76 (187)
T ss_dssp HHHHHHHHHHC--GG-GGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-H-----HTT---HHHHHHHHHHHHS-B-THHH
T ss_pred hhHHHHHhhhcccHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH-----HhcC-CHHHHHHHHHHhcCCcHHHHH
Confidence 345677777777552 22211 35677788899999999999999732 2344 888899999999999999999
Q ss_pred HHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 283 AVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 283 ~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~~ 318 (321)
.++...|+| ........++++++++++|+++.++..
T Consensus 77 ~~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 77 VFTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 999999999 888888889999999999999988764
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.96 E-value=8.1e-05 Score=70.61 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=88.6
Q ss_pred cchhHHHHHHhhhhhcCCCCCC-C-cCchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHH
Q 020834 202 EAMIPCILLALGGNLVDGPGSA-K-LGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSV 279 (321)
Q Consensus 202 ~~~vPl~livlG~~L~~~~~~~-~-~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~ 279 (321)
...+-+.|+..|..|... +.. . .+++....+.+.-++++|++++++.+. ++. ||.+..=+++..+.|.++
T Consensus 41 ~~~l~lImf~mGl~Ls~~-d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l-~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 41 PIALALIMFGMGLTLSRE-DFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPL-PPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHhcCCCCCHH-HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCC-CHHHHHhHHheeeCCCch
Confidence 445667788888888763 211 1 247899999999999999999999874 344 777777789999999999
Q ss_pred HHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 280 LSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 280 ~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~~ 318 (321)
...+++..+++| ...-.....+++++++..|+++.+++.
T Consensus 113 ~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 113 ASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 666666779999999999999998753
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.32 E-value=0.0014 Score=62.55 Aligned_cols=144 Identities=20% Similarity=0.145 Sum_probs=98.9
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCC-cCchHHHHHHHHHHh
Q 020834 161 QPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAK-LGFRTTAAIIFGRLV 239 (321)
Q Consensus 161 nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~-~~~~~i~~~~~~Rli 239 (321)
|+.+++.+++++++..-|-. +.....+. .+......+.+..++-|.+|....-.+. .++|....+...-++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~------g~~~~~~~--~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fv 72 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAP------GAAGGVIK--PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFV 72 (313)
T ss_pred CchHHHHHHHHHHHHHcCcc------cccCCccc--hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 34567777777777643211 11111221 0234444588888888988865211111 247788888999999
Q ss_pred HHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHH-HHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 240 LVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLS-GAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYL 317 (321)
Q Consensus 240 l~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~-~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~ 317 (321)
+.|++++.+...... + .++.+..=+++..|+|+.+.. ..+++..|+| ..+--....+.++.++..|+|+.+++
T Consensus 73 l~Pll~~~~~~l~~~--~---~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 73 LFPLLGFGLSRLFPA--F---LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHHHhhc--c---CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999999998775321 2 266688889999999998766 4688988888 44444466899999999999999887
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.47 Score=45.50 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHH--HhccchhHHHHHHhhhhhcCC---CCCCCc-----CchHHHH
Q 020834 163 PIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCI--ILGEAMIPCILLALGGNLVDG---PGSAKL-----GFRTTAA 232 (321)
Q Consensus 163 ~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~--~lG~~~vPl~livlG~~L~~~---~~~~~~-----~~~~i~~ 232 (321)
..+++++|+.++..-| -+.+.+. ..++.++|++..++= +++.. .+.++. +.|....
T Consensus 20 v~l~i~~Gi~lG~~~p-------------~~~~~l~~~~~~~~sipiai~L~~-MmYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 20 VFLAIAIGILLGVHFP-------------GLAQLLGKLEFGGVSIPIAIGLIL-MMYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred HHHHHHHHHHHHhccc-------------chhhhcccceeCceehhHHHHHHH-HHhHHHhcCCHHHHHHHHhcchHHHH
Confidence 5788888888875421 2444455 678888888765543 33331 121111 3678888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHH
Q 020834 233 IIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAG 311 (321)
Q Consensus 233 ~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi 311 (321)
..+.-.++-|++++.+.++ +++. -|.++.-+++....|+-..+.+-++..++| +.++..+.+.-++.++..|.
T Consensus 86 sL~~Nwii~P~lm~~la~~-----fl~~-~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~ 159 (342)
T COG0798 86 SLFVNWIIGPLLMFALAWF-----FLPD-EPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAP 159 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCC-CHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 3343 677888888888999999999999999999 77777788999999999999
Q ss_pred HHHHHHHh
Q 020834 312 WIILYLNL 319 (321)
Q Consensus 312 ~~~l~~~~ 319 (321)
+..+|+..
T Consensus 160 ~~~~~l~v 167 (342)
T COG0798 160 LGKFFLGV 167 (342)
T ss_pred HHHHHHhh
Confidence 98888764
No 12
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=80.66 E-value=28 Score=31.51 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=71.5
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHH
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFG 236 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 236 (321)
+.++||.+++.++=+.+-.+- +.|.+--.+.-+.+...--|. .+.+|.-|++..+.-+-+++.+...++.
T Consensus 17 ~~~l~P~l~a~~~ii~~L~~~---------~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~ 86 (215)
T PF04172_consen 17 SPFLNPLLIAIVLIIAFLLLT---------GIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLV 86 (215)
T ss_pred CCcccHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999888765554331 355543334445554444444 5678888887422111124444444444
Q ss_pred HHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHH
Q 020834 237 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGW 312 (321)
Q Consensus 237 Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~ 312 (321)
=-++--.....+.+ .+|. ++.+..-.+-=-..+|-|+ -+++..|.+ ...+..++.|=++..+.=|.+
T Consensus 87 g~~~~~~~~~~l~~---~lgl---~~~~~~Sl~pkSVTtpiAi---~is~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 87 GSLVSIFSAVLLAR---LLGL---SPEIILSLAPKSVTTPIAI---EISEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHHHH---HHCc---CHHHHHHHHHHHhhHHHHH---HHHHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 33333333333332 2344 2444444333444566666 456778887 666666666655544444443
No 13
>PRK10711 hypothetical protein; Provisional
Probab=76.88 E-value=44 Score=30.58 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHH
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFG 236 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 236 (321)
+.++||.+++.++-+.+-.+- +.+.+--.+.-+.+...--|. .+.++.-|++..+.-+-.++.+...+++
T Consensus 28 ~~~l~Pll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~I~~~~~v 97 (231)
T PRK10711 28 FPLLNPLLVAMVVIIPFLLLT---------GIPYEHYFKGSEVLNDLLQPA-VVALAFPLYEQLHQIRARWKSIISICFI 97 (231)
T ss_pred CCcccHHHHHHHHHHHHHHHh---------CCCHHHHHhccHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456799999987766664431 344433333444444444443 3466778887422222234555555554
Q ss_pred HHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHH
Q 020834 237 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGW 312 (321)
Q Consensus 237 Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~ 312 (321)
=-++--...+.+.+. +|+ ++.+..-.+-=-..+|-|+ .+++..|.. ...+..+..|=++-.+--|.+
T Consensus 98 G~~v~i~s~~~l~~~---lg~---~~~~~~Sl~pkSVTtPIAm---~is~~iGG~~sLta~~ViitGi~Ga~~g~~l 165 (231)
T PRK10711 98 GSVVAMVTGTAVALW---MGA---TPEIAASILPKSVTTPIAM---AVGGSIGGIPAISAVCVIFVGILGAVFGHTL 165 (231)
T ss_pred HHHHHHHHHHHHHHH---HCc---CHHHHHHHhhhhhhHHHHH---HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444332 343 2333333333344567776 456888888 666666666655554444443
No 14
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=76.21 E-value=30 Score=31.57 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred hhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHH
Q 020834 158 QILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGR 237 (321)
Q Consensus 158 ~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~R 237 (321)
.+.||.+++.++.+.+-..- +.+.+-=.+.-+.+-..--| +.+.++.=|++..+.-+-.|+.+...+++=
T Consensus 31 ~~l~PlLv~~~~li~~L~~~---------~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vG 100 (230)
T COG1346 31 PFLNPLLVATVLLIAFLLLF---------GISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVG 100 (230)
T ss_pred cccchHHHHHHHHHHHHHHc---------CCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999998887775532 33332222233333333344 556777778874222222355555444433
Q ss_pred HhHHHHHHHHHHHHHHh-cCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 020834 238 LVLVPPAGLGIVTLADK-LGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWI 313 (321)
Q Consensus 238 lil~P~i~~~i~~~~~~-~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~ 313 (321)
-+ +++....++.+ +|+ +|.+..-.+-=-..+|-|+ -+++.-|.- +..+..+..+=++-.+.-|..+
T Consensus 101 s~----~ai~s~~llak~~g~---~~~~~~Sl~PkSvTTpiAm---~vs~~iGGip~ltav~Vi~tGi~Gavlg~~ll 168 (230)
T COG1346 101 SV----VAIISGVLLAKLFGL---SPELILSLLPKSVTTPIAM---EVSESIGGIPALTAVFVILTGILGAVLGPLLL 168 (230)
T ss_pred HH----HHHHHHHHHHHHhCC---CHHHHHHhcccccccHHHH---HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33333333332 444 2333333322334456665 346666666 5555556666555555444443
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.68 E-value=1.1e+02 Score=32.01 Aligned_cols=118 Identities=9% Similarity=0.015 Sum_probs=70.6
Q ss_pred hHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHH
Q 020834 192 FFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLL 271 (321)
Q Consensus 192 ~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l 271 (321)
-+.+.++-..+...|+--+.+|+++.-. ... ..+..+...++..+++=++..+...+ .+|. +..+. ...-+.+
T Consensus 258 ~l~~~i~pf~~lll~lFFi~vGm~id~~-~l~-~~~~~il~~~~~~l~~K~~~~~~~~~---~~g~-~~~~a-l~~g~~L 330 (601)
T PRK03659 258 ELEIAIEPFKGLLLGLFFISVGMALNLG-VLY-THLLWVLISVVVLVAVKGLVLYLLAR---LYGL-RSSER-MQFAGVL 330 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHH-HHH-HhHHHHHHHHHHHHHHHHHHHHHHHH---HhCC-CHHHH-HHHHHHH
Confidence 5566677777888999999999876431 000 11233444444444444444444333 2333 11122 3333456
Q ss_pred hhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 272 QHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILY 316 (321)
Q Consensus 272 ~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~ 316 (321)
.....-+..+..++..+|.= .+....++...++|++.-|++..++
T Consensus 331 ~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 331 SQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred hccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888754 5555666777888888888776654
No 16
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=69.65 E-value=1.2e+02 Score=31.74 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=71.0
Q ss_pred hHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHH
Q 020834 192 FFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLL 271 (321)
Q Consensus 192 ~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l 271 (321)
-+.+.++-..+...|+--+.+|+++.-. .... .+..+...++..++.=++.++...+. .|+ +..+. ...-+.+
T Consensus 261 ~le~~i~pf~~lll~lFFi~vG~~id~~-~l~~-~~~~il~~~~~~~~~K~~~~~~~~~~---~g~-~~~~a-~~~gl~L 333 (621)
T PRK03562 261 ALESDIEPFKGLLLGLFFIAVGMSIDFG-TLLE-NPLRILILLLGFLAIKIAMLWLLARP---LGV-PRKQR-RWFAVLL 333 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHhHH-HHHHHHH
Confidence 5666777777888899999999877542 1110 12233344444444444444444332 333 22133 3333456
Q ss_pred hhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 272 QHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILY 316 (321)
Q Consensus 272 ~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~ 316 (321)
......+..+..++...|.= .+....+....++|.+.-|++..++
T Consensus 334 ~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 334 GQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred hccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66778888888888887754 6666666667788888888876654
No 17
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=64.65 E-value=1.1e+02 Score=27.84 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=65.8
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHH
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFG 236 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 236 (321)
+.++||.+++.++-+.+-.+- +.+.+--.+.-+.+...--| +.+.++.-|++..+.-+-.++.+...+++
T Consensus 27 ~~~lnPvl~~~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~ 96 (226)
T TIGR00659 27 RPYLNPLLLTPLVLVGILLLV---------GIPYESYMLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAV 96 (226)
T ss_pred CccccHHHHHHHHHHHHHHHh---------CCCHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456799999988766664432 34432223333333333223 23466667777411111123444444433
Q ss_pred HHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHH-HhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHH
Q 020834 237 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLL-LQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAG 311 (321)
Q Consensus 237 Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~-l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi 311 (321)
=-++--...+.+.+ .+|+ |+.....+. =-..+|-|+ -+++..|.+ ...+..++.|=++-.+.-|.
T Consensus 97 G~~~~~~s~~~la~---~lg~----~~~i~~Sl~pkSvTtpiAm---~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ 163 (226)
T TIGR00659 97 GSVIAIISGTLLAL---LLGL----GPEIIASLLPKSVTTPIAM---HVSEMIGGIPAVTAVFVILTGLLGTVFGPM 163 (226)
T ss_pred HHHHHHHHHHHHHH---HHCc----CHHHHHHhhhHHhhHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322 2344 433333322 233456665 457788888 66666666665555444443
No 18
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=62.45 E-value=1.3e+02 Score=27.65 Aligned_cols=136 Identities=13% Similarity=0.018 Sum_probs=69.5
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHH
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFG 236 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~ 236 (321)
+.++||.+++.++-+.+-.+- +.|.+--.+.-+.+-..--| +.+.++.-|++..+.-+-.++.+...+++
T Consensus 33 ~~~lnPll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~v 102 (232)
T PRK04288 33 FFLFTPLFVAMVLGIAFLKLT---------GISYEEYNIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVV 102 (232)
T ss_pred CcchhHHHHHHHHHHHHHHHh---------CCCHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455799999888777665431 34443223333333333333 23366667777421111124444444444
Q ss_pred HHhHHHHHHHHHHHHHHhcCCccCCchHHHHHH-HHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHH
Q 020834 237 RLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVL-LLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGW 312 (321)
Q Consensus 237 Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~-~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~ 312 (321)
=-++--...+.+.+. +|. |+.....+ -=-..+|-|+ .+++..|.. ...+..+..+=++-.+.-|.+
T Consensus 103 G~~~~i~s~~~la~~---lgl----~~~~~~Sl~pKSVTtPIAm---~is~~iGG~psLtA~~ViitGi~Gai~g~~l 170 (232)
T PRK04288 103 GSVCSVLIIYLVAKL---IQL----DNAVMASMLPQAATTAIAL---PVSAGIGGIKEITSFAVIFNAVIIYALGAKF 170 (232)
T ss_pred HHHHHHHHHHHHHHH---HCc----CHHHHHHHhhHhhhHHHHH---HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444344444332 343 44333333 3334556666 457888888 776777666655555544443
No 19
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=61.23 E-value=89 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHhhcchHHH-HHHHHHHhcCCh-hhHHH
Q 020834 269 LLLQHTMPTSV-LSGAVSSLRGCG-REAAA 296 (321)
Q Consensus 269 ~~l~~a~P~A~-~~~~la~~~g~~-~~~s~ 296 (321)
..+.+++|-+. .+..+|+.+|.| ...+.
T Consensus 107 ta~La~~PGGl~~m~~~A~~~gad~~~V~~ 136 (156)
T TIGR03082 107 TAFLATSPGGASEMAALAAELGADVAFVAA 136 (156)
T ss_pred HHHHHhCCchHHHHHHHHHHhCCCHHHHHH
Confidence 34577888877 556678899988 55543
No 20
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=60.47 E-value=81 Score=30.75 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHhhhhhcCCCCCCCcC-chHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHH-HHHHHH
Q 020834 208 ILLALGGNLVDGPGSAKLG-FRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSV-LSGAVS 285 (321)
Q Consensus 208 ~livlG~~L~~~~~~~~~~-~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~-~~~~la 285 (321)
+..++|.+.+.....+.+. .+..+....+=.++.=++++...++..|++.++ +.- -+..++|-+. .+..+|
T Consensus 63 ~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~---~~T----a~~gs~PGgas~m~~iA 135 (352)
T COG3180 63 GQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILP---GNT----AFLGSSPGGASAMVSIA 135 (352)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCC---cch----hhHhcCCchHHHHHHHH
Confidence 3456677776643333221 222222333333334444555555566666433 221 2345677655 677889
Q ss_pred HhcCCh-hhHH
Q 020834 286 SLRGCG-REAA 295 (321)
Q Consensus 286 ~~~g~~-~~~s 295 (321)
|.||+| +..|
T Consensus 136 ~d~gAd~~~VA 146 (352)
T COG3180 136 QDYGADLRLVA 146 (352)
T ss_pred HHhCCChhHHH
Confidence 999999 5553
No 21
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=53.84 E-value=1.6e+02 Score=28.11 Aligned_cols=51 Identities=22% Similarity=0.119 Sum_probs=39.4
Q ss_pred hhcChhHHHHHHHHHHhh-hhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcC
Q 020834 158 QILQPPIIASILAMGIGA-VPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVD 218 (321)
Q Consensus 158 ~l~nP~iia~i~g~ii~~-ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~ 218 (321)
.-.+++++|.++|++++= +. ...+.....++....-....+.+.+|.++.-
T Consensus 24 ~~l~~~~~AillG~~i~n~~~----------~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~ 75 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFF----------GLPARFKPGIKFSSKKLLRLGIVLLGFRLSF 75 (305)
T ss_pred cCccHHHHHHHHHHHHhhhcc----------CCcHHHHhHHHHHHHHHHHHHHHHHCccccH
Confidence 446789999999999972 22 1224667778888888999999999999865
No 22
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=51.01 E-value=45 Score=30.35 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHH-HHhcCChhhHHHHHHHHHHH
Q 020834 226 GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAV-SSLRGCGREAAAVLFWVHIF 304 (321)
Q Consensus 226 ~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~l-a~~~g~~~~~s~~l~~s~l~ 304 (321)
+|+.-..+...-|.+.|.+.+++..... .-|. |..+..-+.+..|||+-....++ +...|.++ ++..+-|-..
T Consensus 82 ~w~LhLFilI~~Ll~tPs~~~Lf~~~~~---~~~i-~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa--~A~~v~S~f~ 155 (287)
T KOG4821|consen 82 NWRLHLFILILSLLITPSIVYLFCCAVK---AAKI-DDWLLIGLILTACMPTTVSSNVILTTNAGGNA--SALCVCSVFI 155 (287)
T ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHh---Ccch-hHHHHhhheeeeecCCccccceeeeeccCccH--HHHHHHHHHH
Confidence 4677778888899999999998876422 1123 55566668889999998866554 44444443 4455556666
Q ss_pred HHHHHHHHHH
Q 020834 305 AVFSMAGWII 314 (321)
Q Consensus 305 s~vTlpi~~~ 314 (321)
++++.+....
T Consensus 156 g~L~~~~i~~ 165 (287)
T KOG4821|consen 156 GNLLGAFITP 165 (287)
T ss_pred HHHhhhHHHH
Confidence 6666554433
No 23
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=47.95 E-value=1.9e+02 Score=30.27 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=60.0
Q ss_pred hhhhcChhHHHHHH-HHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHH
Q 020834 156 LKQILQPPIIASIL-AMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAII 234 (321)
Q Consensus 156 ~k~l~nP~iia~i~-g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~ 234 (321)
.|.+.-|++++-++ |++++ |.. ++ . . .-.+.++.++...+.+-|+.+|..+... +..+. ++.++...
T Consensus 24 ~~rl~lp~vlgyilaGillG--P~~----lg--~-i-~~~~~i~~laelGvv~LlF~iGLEl~~~-~l~~~-~~~~~~~g 91 (621)
T PRK03562 24 AVRLGLGSVLGYLIAGCIIG--PWG----LR--L-V-TDVESILHFAEFGVVLMLFVIGLELDPQ-RLWKL-RRSIFGGG 91 (621)
T ss_pred HHHhCCChHHHHHHHHHHhC--ccc----cc--C-C-CCHHHHHHHHHHHHHHHHHHHHhCcCHH-HHHHH-HHHHHHHH
Confidence 46777788888765 55554 210 11 0 0 0134578999999999999999988642 22222 23333333
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhc
Q 020834 235 FGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLR 288 (321)
Q Consensus 235 ~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~ 288 (321)
.. .++.+.+....+.. ..|+ +-.....+....+...+|+.+-++.++.
T Consensus 92 ~~-qv~~~~~~~~~~~~--~~g~---~~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 92 AL-QMVACGGLLGLFCM--LLGL---RWQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred HH-HHHHHHHHHHHHHH--HhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 23333333222211 1232 1222333445555566777767777654
No 24
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=43.11 E-value=3.1e+02 Score=26.33 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=55.5
Q ss_pred hHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHHHHHHHHHHHHHhcCC-----ccCCchHHH
Q 020834 192 FFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGF-----IPAGDKMFK 266 (321)
Q Consensus 192 ~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~-----l~~~d~~~~ 266 (321)
.+++++-.=...-+-+-+++.|+++.- +....-.|+-...++.|+++-=++++.+.+++...|+ +. .
T Consensus 38 ~fT~al~~G~~~iig~~l~~~Ga~I~~--k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~G------l 109 (314)
T PF03812_consen 38 GFTTALFTGANPIIGVFLFCMGAQIDL--KSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLG------L 109 (314)
T ss_pred cHHHHHHcchHHHHHHHHHHhccccch--hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccc------h
Confidence 355555432233445567788888754 2222235666778899999999999988776443332 22 1
Q ss_pred HHHHHhhcchHHHHH--HHHHHhcCChhhHHHH
Q 020834 267 FVLLLQHTMPTSVLS--GAVSSLRGCGREAAAV 297 (321)
Q Consensus 267 ~V~~l~~a~P~A~~~--~~la~~~g~~~~~s~~ 297 (321)
-.+.+.+|+-..... ..++++||++++.+..
T Consensus 110 S~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~ 142 (314)
T PF03812_consen 110 SALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF 142 (314)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH
Confidence 223344444443332 3446889988444333
No 25
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=42.41 E-value=4.9e+02 Score=28.42 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=60.9
Q ss_pred hhhhcChhHHHHHHH-HHHhh-----hhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchH
Q 020834 156 LKQILQPPIIASILA-MGIGA-----VPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRT 229 (321)
Q Consensus 156 ~k~l~nP~iia~i~g-~ii~~-----ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~ 229 (321)
+|.+..|.+++-+++ +++|= ++...+.+| |. --.+.++.+++...=+-|+.+|..+.-. ..++. .+.
T Consensus 62 l~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~f----p~-~~~~~l~~la~lGlillmFliGLE~Dl~-~lr~~-~k~ 134 (832)
T PLN03159 62 LKPFRQPRVISEILGGVILGPSVLGQSEVFANTIF----PL-RSVMVLETMANLGLLYFLFLVGVEMDIS-VIRRT-GKK 134 (832)
T ss_pred HHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcC----Cc-chHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHhc-chH
Confidence 577778988887655 44431 111111111 11 1134689999999999999999987642 12222 233
Q ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhc
Q 020834 230 TAAIIFGRLVLVPPAG-LGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLR 288 (321)
Q Consensus 230 i~~~~~~Rlil~P~i~-~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~ 288 (321)
.+.+.+.-+ ++|++. +.+.+++...+..........++.+.++.+-.++..-++.++.
T Consensus 135 a~~ia~~~~-ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk 193 (832)
T PLN03159 135 ALAIAIAGM-ALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIK 193 (832)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 444444433 456544 3333322111100000122344445555444445666666543
No 26
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=39.56 E-value=29 Score=34.07 Aligned_cols=104 Identities=17% Similarity=0.087 Sum_probs=67.1
Q ss_pred HHHHHhhhhhcCCCCCCCc--CchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHH
Q 020834 207 CILLALGGNLVDGPGSAKL--GFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAV 284 (321)
Q Consensus 207 l~livlG~~L~~~~~~~~~--~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~l 284 (321)
..++.+|.++.-. ...+. +...+....+.++++.|+.++.+.... .+|. +. ....++..|.+++.....+
T Consensus 121 ~~~ls~g~~~~~~-~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~-~~--~ag~~Lvtc~~p~g~~~~~ 192 (371)
T KOG2718|consen 121 SNMLSFGIKLDMD-LFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPA-AL--AAGLLLVTCVSPGGGGNYL 192 (371)
T ss_pred HHHHHHhcCccHH-HHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCc-cc--cceeEEEEeccCCcchhhh
Confidence 3455566655431 11111 234455566669999999998865321 2343 21 1456788888888888888
Q ss_pred HHhc-CChhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020834 285 SSLR-GCGREAAAV-LFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 285 a~~~-g~~~~~s~~-l~~s~l~s~vTlpi~~~l~~~ 318 (321)
...+ +.|...+.. ...+++.+++.+|+|..++..
T Consensus 193 ~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~ 228 (371)
T KOG2718|consen 193 TSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGR 228 (371)
T ss_pred eeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 7777 455555555 557899999999999887654
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=38.16 E-value=1.8e+02 Score=27.92 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=46.5
Q ss_pred hhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHH--HH
Q 020834 204 MIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSV--LS 281 (321)
Q Consensus 204 ~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~--~~ 281 (321)
-+-+-+++.|+++.- +......++-...+..|.++-=++++.+.+++...|++.. . .+.+.+|+=-.. .-
T Consensus 50 il~~~~~~~Ga~I~~--k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gl-s-----~laiiaa~~~~Ng~ly 121 (312)
T PRK12460 50 LLGAFLLCMGAQISL--KAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGL-S-----GLAIVAAMSNSNGGLY 121 (312)
T ss_pred HHHHHHHHhcCeeec--cccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccch-H-----HHHHHHHHhcCcHHHH
Confidence 344567888988765 2222224455566788999988888888775443333322 2 223333333222 22
Q ss_pred HHHHHhcCChhh
Q 020834 282 GAVSSLRGCGRE 293 (321)
Q Consensus 282 ~~la~~~g~~~~ 293 (321)
..++++||++++
T Consensus 122 ~al~~~yG~~~d 133 (312)
T PRK12460 122 AALMGEFGDERD 133 (312)
T ss_pred HHHHHHcCCHhh
Confidence 334789998833
No 28
>COG3329 Predicted permease [General function prediction only]
Probab=38.01 E-value=1.4e+02 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=33.7
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcC
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVD 218 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~ 218 (321)
..+.||.++..+.|++++++.-.|. . +.+.+...-+=+...-+-|+.+|..-.+
T Consensus 213 Esflnpal~lllggl~iGlitGe~g------~--~vl~~F~~~lFqGvL~lflL~MGm~A~r 266 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLITGEQG------E--SVLKPFFDPLFQGVLCLFLLDMGMTAGR 266 (372)
T ss_pred HHHcCchHHHHHHHHHHhheeccCc------h--hhhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 4667999999999999998753221 1 1222222223334455667788877665
No 29
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=36.95 E-value=4.5e+02 Score=27.35 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=58.5
Q ss_pred hhhhcChhHHHHHH-HHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHH
Q 020834 156 LKQILQPPIIASIL-AMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAII 234 (321)
Q Consensus 156 ~k~l~nP~iia~i~-g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~ 234 (321)
.+++.-|++++-++ |++++ |.. ++ . .. -.+.+..+++..+.+-|+.+|..+... +..+. .+.++...
T Consensus 24 ~~rl~~p~ilg~ilaGillG--P~~----lg--~-i~-~~~~i~~laelGvv~LLF~iGLel~~~-~l~~~-~~~~~~~g 91 (601)
T PRK03659 24 AQRLGIGAVLGYLLAGIAIG--PWG----LG--F-IS-DVDEILHFSELGVVFLMFIIGLELNPS-KLWQL-RRSIFGVG 91 (601)
T ss_pred HHHhCCChHHHHHHHHHHhc--ccc----cc--C-CC-cHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHH-HHHHHHHH
Confidence 35666788888755 55543 210 11 0 00 124577899999999999999887642 11111 23333333
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhc
Q 020834 235 FGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLR 288 (321)
Q Consensus 235 ~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~ 288 (321)
.=.++.|.+....+.. ..|+ + -+....+.+..+...+|+...++.++.
T Consensus 92 -~~~v~~t~~~~~~~~~--~~g~-~--~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 92 -AAQVLLSAAVLAGLLM--LTDF-S--WQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred -HHHHHHHHHHHHHHHH--HHcc-C--HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444433322221 1233 1 122233344455566777666776654
No 30
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=36.40 E-value=3.8e+02 Score=25.54 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=40.2
Q ss_pred HHHHHhhhhhcCCCCCCCcC-chHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHH-HHHHH
Q 020834 207 CILLALGGNLVDGPGSAKLG-FRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSV-LSGAV 284 (321)
Q Consensus 207 l~livlG~~L~~~~~~~~~~-~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~-~~~~l 284 (321)
.+..++|..+........+. ..........=.++.-++.....+.+.|.+.. |. ..-+.+++|-+. .+..+
T Consensus 29 ~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~---d~----~TA~~~~~PGg~s~m~~l 101 (318)
T PF05145_consen 29 AGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL---DR----ATAFFASMPGGLSEMVAL 101 (318)
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---Ch----hHHHHHcCCccHHHHHHH
Confidence 34456666666532222111 11222223333333333444444444554332 32 245567888776 56677
Q ss_pred HHhcCCh-hhH
Q 020834 285 SSLRGCG-REA 294 (321)
Q Consensus 285 a~~~g~~-~~~ 294 (321)
|+++|.| +..
T Consensus 102 a~~~gad~~~V 112 (318)
T PF05145_consen 102 AEEYGADTRRV 112 (318)
T ss_pred HHHcCCChhhh
Confidence 9999998 544
No 31
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=26.85 E-value=6e+02 Score=25.35 Aligned_cols=142 Identities=17% Similarity=0.037 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcc----CCCcch-hHHHHHHHhccchhHHHHHHhhhhhcCCC-------------CCCC
Q 020834 163 PIIASILAMGIGAVPFLKKLIFT----DDAPLF-FFTDSCIILGEAMIPCILLALGGNLVDGP-------------GSAK 224 (321)
Q Consensus 163 ~iia~i~g~ii~~ip~l~~~f~~----~~~~l~-~i~~~l~~lG~~~vPl~livlG~~L~~~~-------------~~~~ 224 (321)
..-..-+|++.....+-|..+|. .-.||. .+..+.+.++.-+.|- +|+-|.... +.++
T Consensus 78 lf~f~pl~~~~h~~~~s~~~vF~lsll~iiPLA~~l~~ateqls~~tg~t----vGgllNAtfGnaiElii~ilALk~g~ 153 (441)
T KOG1397|consen 78 LFPFVPLAIIAHWFTWSKGWVFLLSLLGIIPLAERLGFATEQLSAYTGPT----VGGLLNATFGNAIELIIYILALKNGK 153 (441)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc----HHHHHhhhhccHHHHHHHHHHhhcCc
Confidence 33355566666555555555552 145663 6666777776666653 333332210 1222
Q ss_pred cC--chHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhH---HHHH
Q 020834 225 LG--FRTTAAIIFGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REA---AAVL 298 (321)
Q Consensus 225 ~~--~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~---s~~l 298 (321)
.+ ...+++.++.-++++|-..+..-...+|...... ..--....++..|+=.....+++-..|+.. ..+ ..++
T Consensus 154 ~riVq~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~Fn~-~~A~v~s~lLl~a~l~~l~P~~l~~~~~~~~~~~~~~~~~l 232 (441)
T KOG1397|consen 154 VRIVQGSLLGSILSNLLLVLGLSLFCGGIRRKDQRFNI-KSAGVNSALLLLAVLGILLPTVLHYTYGGEVHDCSSGGAIL 232 (441)
T ss_pred eEEEehhhHHHHHHHHHHHhhHHHhhcccccceeeccc-chhhHHHHHHHHHHHHHHHHHHHHHhcCccccccCCcccee
Confidence 22 4577888899999998777665443333332211 122233445555665666666666666644 322 2256
Q ss_pred HHHHHHHHHHH
Q 020834 299 FWVHIFAVFSM 309 (321)
Q Consensus 299 ~~s~l~s~vTl 309 (321)
-.|+-+|++-+
T Consensus 233 ~lSr~~Sivml 243 (441)
T KOG1397|consen 233 PLSRGCSIVML 243 (441)
T ss_pred eehhccHHHHH
Confidence 67777777644
No 32
>COG2855 Predicted membrane protein [Function unknown]
Probab=22.53 E-value=5.8e+02 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcC
Q 020834 161 QPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVD 218 (321)
Q Consensus 161 nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~ 218 (321)
.++++|+++|++++..+..++-+ ...++.-...-...+.+.+|.++.-
T Consensus 38 ~al~lAIllGi~l~~l~~~~~~~----------~~GI~fs~k~LLr~gIvLlG~~ltl 85 (334)
T COG2855 38 SALTLAILLGILLGILPQIPAQT----------SAGITFSSKKLLRLGIVLLGFRLTL 85 (334)
T ss_pred hHHHHHHHHHHHHhccccchhhh----------ccchhhhHHHHHHHHHHHHcceeeH
Confidence 39999999999999665433221 2223333444456677788887765
No 33
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=21.58 E-value=6.1e+02 Score=22.96 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=58.3
Q ss_pred hhhhcChhHHHHH-HHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHH
Q 020834 156 LKQILQPPIIASI-LAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAII 234 (321)
Q Consensus 156 ~k~l~nP~iia~i-~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~ 234 (321)
.|++.-|.+.+-+ .|++++ |.. ++ ..+ -.+.++.+++....+.|+..|..+... ..++ ..+......
T Consensus 11 ~~~l~lP~~v~~il~GillG--p~~----lg-~i~---~~~~~~~l~~igl~~llF~~Gl~~d~~-~l~~-~~~~~~~~~ 78 (273)
T TIGR00932 11 SRRLGIPSVLGYLLAGVLIG--PSG----LG-LIS---NVEGVNHLAEFGVILLMFLIGLELDLE-RLWK-LRKAAFGVG 78 (273)
T ss_pred HHHhCCCHHHHHHHHHHHhC--ccc----cc-CCC---ChHHHHHHHHHHHHHHHHHHHhCCCHH-HHHH-HHHHHHHHH
Confidence 3556667666654 466665 211 11 011 124688899999999999999877542 1111 133444444
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhc
Q 020834 235 FGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLR 288 (321)
Q Consensus 235 ~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~ 288 (321)
..-.+ .|.+....... ...++ + -.....+...++++=+++...++.++.
T Consensus 79 ~~~~~-~~~~~~~~~~~-~~~~~-~--~~~~~~lg~~ls~Ts~~v~~~il~~~~ 127 (273)
T TIGR00932 79 VLQVL-VPGVLLGLLLG-HLLGL-A--LGAAVVIGIILALSSTAVVVQVLKERG 127 (273)
T ss_pred HHHHH-HHHHHHHHHHH-HHHCC-C--HHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 44444 46333332111 11232 1 223344445555555566666666554
No 34
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=20.86 E-value=2.3e+02 Score=27.11 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=50.2
Q ss_pred hHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHHHHHHhHHHHHHHHHHHHHHhcC-----CccCCchHHH
Q 020834 192 FFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLG-----FIPAGDKMFK 266 (321)
Q Consensus 192 ~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~~~Rlil~P~i~~~i~~~~~~~~-----~l~~~d~~~~ 266 (321)
.+++++-.=...-+-+-++++|+++.-. ......++-...+..|.++-=++++.+.+++...| ++..
T Consensus 38 gFTtalf~G~~~il~~~l~~~Ga~I~~k--~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~Gl------ 109 (314)
T TIGR00793 38 SFTNGLITGTVPILAVWFFCMGASIDLS--ATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGL------ 109 (314)
T ss_pred chhHHHHcCcHHHHHHHHHHhCCeeeec--ccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceecc------
Confidence 3455553312223445677888887652 22222344445667899888888888877544333 2221
Q ss_pred HHHHHhhcchHHH--HHHHHHHhcCChhhH
Q 020834 267 FVLLLQHTMPTSV--LSGAVSSLRGCGREA 294 (321)
Q Consensus 267 ~V~~l~~a~P~A~--~~~~la~~~g~~~~~ 294 (321)
-.+.+.+|+=-.. .-..++++||++++.
T Consensus 110 S~LAiiaA~~nsNggLY~aL~~qyGd~~D~ 139 (314)
T TIGR00793 110 STLALVAAMDMTNGGLYASIMQQYGTKEEA 139 (314)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHcCCHhhh
Confidence 2233333433222 223447899988443
No 35
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.03 E-value=9.4e+02 Score=24.54 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred hhhhcChhHHHHHHHHHHhhhhhhhhhhccCCCcch-hHHHHHHHhccchhHHHHHHhhhhhcCCCCCCCcCchHHHHHH
Q 020834 156 LKQILQPPIIASILAMGIGAVPFLKKLIFTDDAPLF-FFTDSCIILGEAMIPCILLALGGNLVDGPGSAKLGFRTTAAII 234 (321)
Q Consensus 156 ~k~l~nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~-~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~~~~~~i~~~~ 234 (321)
.|++.-|.+++-+++-++ +++...-. .-.+.++.+++..+-+-|+..|..+.- +.-+-..+......
T Consensus 25 ~~rl~~P~ivg~IlaGil----------lGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~--~~l~~~~~~~~~~~ 92 (558)
T PRK10669 25 ANRLRISPLVGYLLAGVL----------AGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSL--KDLMAVKSIAIPGA 92 (558)
T ss_pred HHHcCCCHHHHHHHHHHh----------hCccccccccchHHHHHHHHHHHHHHHHHhHhcCCH--HHHHHHhhHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHH
Q 020834 235 FGRLVLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG----REAAAVLFWVHIFAVFSMA 310 (321)
Q Consensus 235 ~~Rlil~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~----~~~s~~l~~s~l~s~vTlp 310 (321)
..-+++.-++++.+.+ .+..+-.....+...++.+.+++..-++.++.-.+ +..-+..+++-+++++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~------~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~ 166 (558)
T PRK10669 93 IAQIAVATLLGMALSA------VLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLV 166 (558)
T ss_pred HHHHHHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 020834 311 GWIIL 315 (321)
Q Consensus 311 i~~~l 315 (321)
+...+
T Consensus 167 ~~~~l 171 (558)
T PRK10669 167 LLPAV 171 (558)
T ss_pred HHHHH
Done!