Query 020834
Match_columns 321
No_of_seqs 221 out of 870
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:52:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.8 7.3E-08 2.5E-12 91.2 13.0 136 161-317 18-156 (332)
2 2zy9_A Mg2+ transporter MGTE; 9.0 1.1E+03 0.038 22.0 9.3 48 271-318 421-468 (473)
3 2bzw_B BCL2-antagonist of cell 5.5 1.6E+02 0.0056 16.5 0.4 14 283-296 6-20 (27)
4 1g6e_A Antifungal protein; all 5.1 68 0.0023 22.7 -1.7 11 8-18 25-35 (87)
5 4ev6_A Magnesium transport pro 4.6 1.1E+03 0.038 20.8 5.8 18 232-249 281-298 (339)
6 1ifp_A PF3 inovirus, major coa 4.5 6.3E+02 0.022 15.4 2.5 25 191-215 13-37 (44)
7 1g92_A Poneratoxin, PAC-TX; ne 3.6 3.5E+02 0.012 14.8 0.8 12 14-25 1-12 (26)
8 1nov_D Nodamura virus coat pro 3.6 9.3E+02 0.032 15.1 3.3 10 143-152 3-12 (44)
9 2z2q_B Coat protein gamma; wil 3.2 1E+03 0.035 14.9 3.0 11 142-152 2-12 (44)
10 1q90_G Cytochrome B6F complex 3.2 5.9E+02 0.02 15.5 1.6 11 162-172 4-14 (37)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.75 E-value=7.3e-08 Score=91.16 Aligned_cols=136 Identities=9% Similarity=0.024 Sum_probs=105.7
Q ss_pred ChhHHHHHHHHHHhhhhhhhhhhccCCCcchhHHHHHHHhccchhHHHHHHhhhhhcCCCCCCC--cCchHHHHHHHHHH
Q 020834 161 QPPIIASILAMGIGAVPFLKKLIFTDDAPLFFFTDSCIILGEAMIPCILLALGGNLVDGPGSAK--LGFRTTAAIIFGRL 238 (321)
Q Consensus 161 nP~iia~i~g~ii~~ip~l~~~f~~~~~~l~~i~~~l~~lG~~~vPl~livlG~~L~~~~~~~~--~~~~~i~~~~~~Rl 238 (321)
++..+.++++++++..-|- ...++ +..-..++.+.|+.+|.++... +.++ .++|......+.++
T Consensus 18 ~~~~l~i~~~~~lg~~~P~---------~~~~~----~~~i~~~l~~~mf~~G~~l~~~-~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 18 KTFSLWAALFAAAAFFAPD---------TFKWA----GPYIPWLLGIIMFGMGLTLKPS-DFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp HTHHHHHHHHHHHHHHCGG---------GTGGG----GGGHHHHHHHHHHHHHHHCCGG-GGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcch---------hhhhh----HHHHHHHHHHHHHHHHhCCCHH-HHHHHHhCcHHHHHHHHHHH
Confidence 5677778888887765321 11121 2223357889999999999763 2221 14566778899999
Q ss_pred hHHHHHHHHHHHHHHhcCCccCCchHHHHHHHHhhcchHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 239 VLVPPAGLGIVTLADKLGFIPAGDKMFKFVLLLQHTMPTSVLSGAVSSLRGCG-REAAAVLFWVHIFAVFSMAGWIILYL 317 (321)
Q Consensus 239 il~P~i~~~i~~~~~~~~~l~~~d~~~~~V~~l~~a~P~A~~~~~la~~~g~~-~~~s~~l~~s~l~s~vTlpi~~~l~~ 317 (321)
+++|++++.+.+. ++. ||.+...+++..++|++....++++++|.| +.+......+++++++++|+|+.++.
T Consensus 84 vi~Pll~~~l~~~------~~l-~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 84 AIMPATAWCLSKL------LNL-PAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHH------TTC-CHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hCC-ChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998764 243 888999999999999999999999999999 88888899999999999999998875
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.05 E-value=1.1e+03 Score=22.00 Aligned_cols=48 Identities=4% Similarity=-0.094 Sum_probs=31.8
Q ss_pred HhhcchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020834 271 LQHTMPTSVLSGAVSSLRGCGREAAAVLFWVHIFAVFSMAGWIILYLN 318 (321)
Q Consensus 271 l~~a~P~A~~~~~la~~~g~~~~~s~~l~~s~l~s~vTlpi~~~l~~~ 318 (321)
+..|.=.+..+..+.+++|.|-..++.-++||+.=++.+-++..+..+
T Consensus 421 ~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~~ 468 (473)
T 2zy9_A 421 VFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVARL 468 (473)
T ss_dssp HHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 444555666677888999999555555566788777776665554443
No 3
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=5.53 E-value=1.6e+02 Score=16.54 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=10.0
Q ss_pred HHHHhcCCh-hhHHH
Q 020834 283 AVSSLRGCG-REAAA 296 (321)
Q Consensus 283 ~la~~~g~~-~~~s~ 296 (321)
..|++||.. +.||-
T Consensus 6 ~~A~rYGReLRRMSD 20 (27)
T 2bzw_B 6 WAAQRYGRELRRMSD 20 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhH
Confidence 568889877 66653
No 4
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} SCOP: b.11.1.6 PDB: 1gh5_A
Probab=5.06 E-value=68 Score=22.71 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=6.0
Q ss_pred ecCCCCchHHH
Q 020834 8 FTGNIGNVPLV 18 (321)
Q Consensus 8 ~f~N~gsLPl~ 18 (321)
.|.|.|+||++
T Consensus 25 cfanag~mpva 35 (87)
T 1g6e_A 25 CFANAGTMPVA 35 (87)
T ss_dssp EECSSCEECCC
T ss_pred EEecCCCceEE
Confidence 35566666543
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=4.65 E-value=1.1e+03 Score=20.77 Aligned_cols=18 Identities=6% Similarity=0.091 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 020834 232 AIIFGRLVLVPPAGLGIV 249 (321)
Q Consensus 232 ~~~~~Rlil~P~i~~~i~ 249 (321)
..+++=.+++|+-.+.-+
T Consensus 281 ~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444554444333
No 6
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=4.45 E-value=6.3e+02 Score=15.36 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.0
Q ss_pred hhHHHHHHHhccchhHHHHHHhhhh
Q 020834 191 FFFTDSCIILGEAMIPCILLALGGN 215 (321)
Q Consensus 191 ~~i~~~l~~lG~~~vPl~livlG~~ 215 (321)
..+..-+..+|++.+-++-+++|..
T Consensus 13 tavqadittiggaiivlaavvlgir 37 (44)
T 1ifp_A 13 TAVQADITTIGGAIIVLAAVVLGIR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeeeecchhHHHHHHHHHhH
Confidence 3456667888888888888888864
No 7
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=3.63 E-value=3.5e+02 Score=14.76 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=6.8
Q ss_pred chHHHHHHHhhc
Q 020834 14 NVPLVLIAALCR 25 (321)
Q Consensus 14 sLPl~Li~sL~~ 25 (321)
+||+.+..||-.
T Consensus 1 flpllilgsllm 12 (26)
T 1g92_A 1 FLPLLILGSLLM 12 (26)
T ss_dssp CHHHHHHHTCSS
T ss_pred CchHHHHHHHhc
Confidence 356666666543
No 8
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=3.59 E-value=9.3e+02 Score=15.14 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=5.3
Q ss_pred hHHHHHHHHH
Q 020834 143 IAEVLIFIYE 152 (321)
Q Consensus 143 ~~~~~~~~~~ 152 (321)
+|++++.+++
T Consensus 3 mWErVk~ilk 12 (44)
T 1nov_D 3 FWERVRSILK 12 (44)
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 9
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=3.21 E-value=1e+03 Score=14.93 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=5.8
Q ss_pred hhHHHHHHHHH
Q 020834 142 KIAEVLIFIYE 152 (321)
Q Consensus 142 ~~~~~~~~~~~ 152 (321)
++|++++++++
T Consensus 2 ~~WErVk~ilk 12 (44)
T 2z2q_B 2 SMWERVKSIIK 12 (44)
T ss_pred cHHHHHHHHHH
Confidence 34556555543
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=3.17 E-value=5.9e+02 Score=15.50 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 020834 162 PPIIASILAMG 172 (321)
Q Consensus 162 P~iia~i~g~i 172 (321)
|.+-++++|++
T Consensus 4 ~lL~GIVlGli 14 (37)
T 1q90_G 4 PLLCGIVLGLV 14 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhHHHhhH
Confidence 44444444443
Done!