Query 020834
Match_columns 321
No_of_seqs 221 out of 870
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 08:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020834.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020834hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 14.6 60 0.0044 17.8 2.4 28 157-184 5-32 (34)
2 d1q90r_ f.23.12.1 (R:) ISP sub 5.5 2.1E+02 0.015 16.3 2.4 27 157-183 10-36 (39)
3 d1p4ea1 a.60.9.1 (A:2-129) Flp 5.5 2.3E+02 0.017 19.2 3.1 37 272-308 6-45 (128)
4 d1g6ea_ b.11.1.6 (A:) Antifung 5.1 32 0.0023 22.7 -1.7 11 8-18 25-35 (87)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 4.1 1.7E+02 0.012 15.3 1.1 20 41-60 3-22 (30)
6 d1q90g_ f.23.26.1 (G:) PetG su 3.4 2.7E+02 0.02 14.6 1.6 10 168-177 6-15 (30)
7 d1ldda_ a.4.5.34 (A:) Anaphase 2.9 3.1E+02 0.023 17.7 1.9 11 298-308 8-18 (74)
8 d1z8oa1 a.104.1.1 (A:3-404) Cy 2.7 2.6E+02 0.019 22.7 1.6 34 29-63 340-375 (402)
9 d1tm9a_ a.225.1.1 (A:) Hypothe 2.4 5.1E+02 0.037 17.7 2.7 19 242-260 94-112 (137)
10 d2ij2a1 a.104.1.1 (A:3-455) Cy 2.4 2.7E+02 0.02 22.9 1.4 31 29-60 389-420 (453)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.57 E-value=60 Score=17.82 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.0
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhhc
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLIF 184 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f~ 184 (321)
++++|-...+.+-|..++..-|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 6788888999999999988766555443
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.52 E-value=2.1e+02 Score=16.32 Aligned_cols=27 Identities=4% Similarity=-0.160 Sum_probs=18.7
Q ss_pred hhhcChhHHHHHHHHHHhhhhhhhhhh
Q 020834 157 KQILQPPIIASILAMGIGAVPFLKKLI 183 (321)
Q Consensus 157 k~l~nP~iia~i~g~ii~~ip~l~~~f 183 (321)
|+++|=.+.+.+-+-..++.-|.-.+|
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhccceeEEe
Confidence 667777788888777777765554444
No 3
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.47 E-value=2.3e+02 Score=19.24 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=24.8
Q ss_pred hhcchHHHHHHHHHHhcCCh--hhHHHH-HHHHHHHHHHH
Q 020834 272 QHTMPTSVLSGAVSSLRGCG--REAAAV-LFWVHIFAVFS 308 (321)
Q Consensus 272 ~~a~P~A~~~~~la~~~g~~--~~~s~~-l~~s~l~s~vT 308 (321)
+.-+||-+.+-++.+++... +.++++ -=.+|++-++|
T Consensus 6 lcktppkvlvrqfverferpsgekiascaaeltylcwmit 45 (128)
T d1p4ea1 6 LCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMIT 45 (128)
T ss_dssp HHHSCHHHHHHHHHHTTTTTCHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCcHHHHHHHHHHhcCCCcchHHHHHHHHHhhheeEe
Confidence 44578888888888888754 444433 33677777665
No 4
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]}
Probab=5.06 E-value=32 Score=22.71 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=6.0
Q ss_pred ecCCCCchHHH
Q 020834 8 FTGNIGNVPLV 18 (321)
Q Consensus 8 ~f~N~gsLPl~ 18 (321)
.|.|.|+||++
T Consensus 25 cfanag~mpva 35 (87)
T d1g6ea_ 25 CFANAGTMPVA 35 (87)
T ss_dssp EECSSCEECCC
T ss_pred EEecCCCceEE
Confidence 35566666543
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.06 E-value=1.7e+02 Score=15.28 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhhheecee
Q 020834 41 MTAYISFGQWVGAIILYTYV 60 (321)
Q Consensus 41 g~~Y~~~~~~vg~~l~ws~g 60 (321)
..+|+.+|.-+-.++++..=
T Consensus 3 ~i~yv~ifac~i~lfffaif 22 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 57899988887777776543
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.40 E-value=2.7e+02 Score=14.63 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=5.6
Q ss_pred HHHHHHhhhh
Q 020834 168 ILAMGIGAVP 177 (321)
Q Consensus 168 i~g~ii~~ip 177 (321)
+.|++++++|
T Consensus 6 l~GivlGlip 15 (30)
T d1q90g_ 6 LCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHhhHH
Confidence 4455555555
No 7
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.86 E-value=3.1e+02 Score=17.69 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 020834 298 LFWVHIFAVFS 308 (321)
Q Consensus 298 l~~s~l~s~vT 308 (321)
.+|+|+..++|
T Consensus 8 ~~w~yI~gMLt 18 (74)
T d1ldda_ 8 RSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 68999999887
No 8
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=2.66 E-value=2.6e+02 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCCC-ChhHHHHhHHHHHHHHHHhhhhheece-eeec
Q 020834 29 NPFA-EPETCSTQMTAYISFGQWVGAIILYTY-VFHM 63 (321)
Q Consensus 29 ~p~g-~~~~~~~rg~~Y~~~~~~vg~~l~ws~-g~~l 63 (321)
.||| .+-.|.++-++|.-+..++..++ |-| .+++
T Consensus 340 lpFG~G~r~C~G~~lA~~el~~~la~ll-~~f~~~~~ 375 (402)
T d1z8oa1 340 LSFGQGIHFCMGRPLAKLEGEVALRALF-GRFPALSL 375 (402)
T ss_dssp CTTCSSTTCCTTHHHHHHHHHHHHHHHH-HHCTTCEE
T ss_pred CCCCCCccCChhHHHHHHHHHHHHHHHH-HhCCCCeE
Confidence 5898 68999999999999999998776 344 4433
No 9
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=2.43 E-value=5.1e+02 Score=17.75 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCCccC
Q 020834 242 PPAGLGIVTLADKLGFIPA 260 (321)
Q Consensus 242 P~i~~~i~~~~~~~~~l~~ 260 (321)
|++.+.+.+++..+|++..
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 6677777787888888864
No 10
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=2.40 E-value=2.7e+02 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=24.8
Q ss_pred CCCC-ChhHHHHhHHHHHHHHHHhhhhheecee
Q 020834 29 NPFA-EPETCSTQMTAYISFGQWVGAIILYTYV 60 (321)
Q Consensus 29 ~p~g-~~~~~~~rg~~Y~~~~~~vg~~l~ws~g 60 (321)
.||| .+-.|.+|.+++.-+..++..++ |.|=
T Consensus 389 ~pFG~G~r~C~G~~~A~~~~~~~la~ll-~~f~ 420 (453)
T d2ij2a1 389 KPFGNGQRACIGQQFALHEATLVLGMML-KHFD 420 (453)
T ss_dssp CTTCCGGGSCTTHHHHHHHHHHHHHHHH-HHEE
T ss_pred cCCCCCCccChhHHHHHHHHHHHHHHHH-HhCE
Confidence 5898 58899999999999999987554 4443
Done!