Query 020836
Match_columns 320
No_of_seqs 149 out of 1590
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 08:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020836.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020836hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 75.8 0.69 5.1E-05 29.2 2.1 22 166-187 20-41 (56)
2 d1wfka_ g.50.1.1 (A:) Zinc fin 67.1 1.4 0.00011 30.5 2.4 26 164-189 8-35 (88)
3 d1joca1 g.50.1.1 (A:1348-1411) 60.8 2.1 0.00016 27.6 2.1 24 166-189 9-34 (64)
4 d1vfya_ g.50.1.1 (A:) vps27p p 60.2 1.6 0.00012 28.5 1.5 24 167-190 7-32 (67)
5 d1dvpa2 g.50.1.1 (A:149-220) H 54.1 2.9 0.00021 27.6 2.0 25 166-190 14-40 (72)
6 d2dmda2 g.37.1.1 (A:8-33) Zinc 52.7 1.8 0.00013 22.3 0.4 14 180-193 2-15 (26)
7 d1y02a2 g.50.1.1 (A:20-70) Rif 42.9 3.3 0.00024 25.5 0.7 22 168-189 3-26 (51)
8 d2cr8a1 g.41.11.1 (A:8-48) MDM 40.3 6.3 0.00046 22.9 1.6 21 166-186 5-25 (41)
9 d2c6aa1 g.41.11.1 (A:290-335) 40.2 10 0.00074 22.5 2.6 21 166-186 14-34 (46)
10 d2dkta2 g.93.1.1 (A:82-137) RI 37.4 1.9 0.00014 27.2 -1.2 12 178-189 33-44 (56)
11 d1njqa_ g.37.1.3 (A:) SUPERMAN 36.4 6.2 0.00045 22.6 1.1 13 176-188 2-14 (37)
12 d2adra2 g.37.1.1 (A:131-161) A 31.2 4.7 0.00035 21.8 -0.0 14 180-193 2-15 (31)
13 d2pg3a1 c.26.2.1 (A:1-230) Que 28.1 4.5 0.00033 32.2 -0.7 18 174-191 189-206 (230)
14 d1q5wa_ g.41.11.1 (A:) Npl4 {R 27.2 17 0.0012 19.4 1.8 21 166-186 7-27 (31)
15 d1olza3 g.16.2.1 (A:481-536) S 22.8 3.6 0.00026 25.8 -1.8 23 183-205 6-31 (56)
16 d1zbdb_ g.50.1.1 (B:) Effector 20.4 18 0.0013 26.0 1.5 24 166-189 49-75 (124)
17 d1lpva_ g.62.1.1 (A:) DM domai 20.3 19 0.0014 22.0 1.3 26 175-200 6-33 (52)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=75.84 E-value=0.69 Score=29.17 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=20.3
Q ss_pred eecccCCcccCCCCccCcCCCc
Q 020836 166 LTCSYCNVEQPPRAKHCHDCDR 187 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~r 187 (320)
+.|.+|...-|+|+..|+.|+.
T Consensus 20 ~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 20 KVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp EEETTTCCEECTTCSSCTTTCC
T ss_pred HHHhhccccCCccccccccCCC
Confidence 7899999999999999998775
No 2
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.08 E-value=1.4 Score=30.53 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=20.0
Q ss_pred cceecccCCcc--cCCCCccCcCCCccc
Q 020836 164 RSLTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 164 ~~~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
....|..|+.. -..|-|||+.||+.+
T Consensus 8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred ccCcCcccCchhccccccccccccChhh
Confidence 33679999874 466889999999854
No 3
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.78 E-value=2.1 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=18.1
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020836 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
.-|..|+.. --.|-|||+.||+.+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 458888763 446789999999865
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.16 E-value=1.6 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=17.9
Q ss_pred ecccCCcc--cCCCCccCcCCCcccC
Q 020836 167 TCSYCNVE--QPPRAKHCHDCDRCVL 190 (320)
Q Consensus 167 ~C~~C~~~--kP~Rs~HC~~C~rCV~ 190 (320)
-|..|+.. .-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 38888763 4568899999998553
No 5
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=54.15 E-value=2.9 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.794 Sum_probs=19.2
Q ss_pred eecccCCcc--cCCCCccCcCCCcccC
Q 020836 166 LTCSYCNVE--QPPRAKHCHDCDRCVL 190 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV~ 190 (320)
..|..|+.. --.|-|||+.||+.+=
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 458888874 4568999999998653
No 6
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.72 E-value=1.8 Score=22.30 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=11.7
Q ss_pred ccCcCCCcccCCCc
Q 020836 180 KHCHDCDRCVLQFD 193 (320)
Q Consensus 180 ~HC~~C~rCV~r~D 193 (320)
|-|..|++|..|-|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 67999999998866
No 7
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.89 E-value=3.3 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.848 Sum_probs=13.5
Q ss_pred cccCCcc--cCCCCccCcCCCccc
Q 020836 168 CSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 168 C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
|..|+.. .-.|-|||+.||+-+
T Consensus 3 C~~C~~~F~~~~rkhhCr~CG~~f 26 (51)
T d1y02a2 3 CKSCGAHFANTARKQTCLDCKKNF 26 (51)
T ss_dssp CTTTCCCCSSGGGCEECTTTCCEE
T ss_pred ccccCCcccCCccCcccccCCccc
Confidence 4445442 334679999988843
No 8
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.33 E-value=6.3 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=17.4
Q ss_pred eecccCCcccCCCCccCcCCC
Q 020836 166 LTCSYCNVEQPPRAKHCHDCD 186 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (320)
..|.+|+..-|+--.||..|=
T Consensus 5 WkC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 5 WQCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecCcccccCCcchhHHHHHH
Confidence 569999999999888888663
No 9
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.21 E-value=10 Score=22.55 Aligned_cols=21 Identities=38% Similarity=0.963 Sum_probs=18.3
Q ss_pred eecccCCcccCCCCccCcCCC
Q 020836 166 LTCSYCNVEQPPRAKHCHDCD 186 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (320)
..|.+|+..-||--.||..|=
T Consensus 14 WkC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred ccCccccccCCcchhHhHHHH
Confidence 679999999999999998763
No 10
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.44 E-value=1.9 Score=27.25 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=5.9
Q ss_pred CCccCcCCCccc
Q 020836 178 RAKHCHDCDRCV 189 (320)
Q Consensus 178 Rs~HC~~C~rCV 189 (320)
.-.||..|+.|+
T Consensus 33 ~ffHC~~C~~C~ 44 (56)
T d2dkta2 33 DFFHCLKCNLCL 44 (56)
T ss_dssp GEEEETTTTEEE
T ss_pred cccccCcccccc
Confidence 344555555554
No 11
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.38 E-value=6.2 Score=22.55 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=11.0
Q ss_pred CCCCccCcCCCcc
Q 020836 176 PPRAKHCHDCDRC 188 (320)
Q Consensus 176 P~Rs~HC~~C~rC 188 (320)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7888999999874
No 12
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=31.17 E-value=4.7 Score=21.82 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=11.7
Q ss_pred ccCcCCCcccCCCc
Q 020836 180 KHCHDCDRCVLQFD 193 (320)
Q Consensus 180 ~HC~~C~rCV~r~D 193 (320)
..|..|+||..|-|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 36999999998877
No 13
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=28.12 E-value=4.5 Score=32.17 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.8
Q ss_pred ccCCCCccCcCCCcccCC
Q 020836 174 EQPPRAKHCHDCDRCVLQ 191 (320)
Q Consensus 174 ~kP~Rs~HC~~C~rCV~r 191 (320)
++|.+.+||-.|..|++|
T Consensus 189 y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 189 YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp TTSCCTTTTSCSHHHHHH
T ss_pred CCCCCCCCCCCCHhHHHH
Confidence 568888999999999987
No 14
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.24 E-value=17 Score=19.42 Aligned_cols=21 Identities=29% Similarity=0.841 Sum_probs=18.3
Q ss_pred eecccCCcccCCCCccCcCCC
Q 020836 166 LTCSYCNVEQPPRAKHCHDCD 186 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (320)
.-|..|--.-.+.+-||..|.
T Consensus 7 WsC~HCTf~N~pgtd~CeMC~ 27 (31)
T d1q5wa_ 7 WACQHCTFMNQPGTGHCEMCS 27 (31)
T ss_dssp EECSSSCCEECTTCSBCTTTC
T ss_pred eEeeeeeeecCCCCCcchhhc
Confidence 569999999999999998875
No 15
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.77 E-value=3.6 Score=25.80 Aligned_cols=23 Identities=48% Similarity=1.105 Sum_probs=18.4
Q ss_pred cCCCcccCCCcccCcC---CCccccc
Q 020836 183 HDCDRCVLQFDHHCVW---LGTCVGL 205 (320)
Q Consensus 183 ~~C~rCV~r~DHHCpW---v~nCIG~ 205 (320)
+.|+.||.-.|-||.| .+.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 4688899999999999 4678754
No 16
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.42 E-value=18 Score=26.02 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=17.9
Q ss_pred eecccCCcc-cC--CCCccCcCCCccc
Q 020836 166 LTCSYCNVE-QP--PRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~-kP--~Rs~HC~~C~rCV 189 (320)
.-|..|+.. .. .|.|||+.|++-|
T Consensus 49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~ 75 (124)
T d1zbdb_ 49 NRCILCGEQLGMLGSASVVCEDCKKNV 75 (124)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred CcCcccCCcccCCCCCCCcCccCCccc
Confidence 459999774 33 5778999998855
No 17
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.31 E-value=19 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=18.5
Q ss_pred cCCCCccCcCCCcccCCCcc--cCcCCC
Q 020836 175 QPPRAKHCHDCDRCVLQFDH--HCVWLG 200 (320)
Q Consensus 175 kP~Rs~HC~~C~rCV~r~DH--HCpWv~ 200 (320)
+|+++..|+.=|.-+..-+| +|+|-+
T Consensus 6 ~~p~CaRCrNHG~~~~lKgHKr~C~~~~ 33 (52)
T d1lpva_ 6 TPPNCARCRNHGLKITLKGHKRYCKFRY 33 (52)
T ss_dssp CCSSCHHHHTTTCCCTTTTCGGGCTTTT
T ss_pred CCCCCcccccCCceeecCCcccccCCCC
Confidence 46677777777776666666 899864
Done!