BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020838
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
          Length = 275

 Score = 30.8 bits (68), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 17/157 (10%)

Query: 84  VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYI 143
           V+N      R  +PH V+G    I+ + L A  ++S           EA+AA L     +
Sbjct: 111 VVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELS---------RNEALAALLRDGETL 161

Query: 144 VGLNQLSDIEIDKLPLLRWKRFAVAAA--MCILAVRAVVVQLAFYLHMQTHVYRRPAVFS 201
             L +LS  E+    LLRW  F +  +    I    A +     Y H+   +  +     
Sbjct: 162 EELMKLSPEEL----LLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 217

Query: 202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238
           +P I     MS F+    L +    L+     G R F
Sbjct: 218 EPRIDIN--MSGFNETDDLKRAESMLQQADKLGCRQF 252


>pdb|1F07|A Chain A, Structure Of Coenzyme F420 Dependent
           Tetrahydromethanopterin Reductase From Methanobacterium
           Thermoautotrophicum
 pdb|1F07|B Chain B, Structure Of Coenzyme F420 Dependent
           Tetrahydromethanopterin Reductase From Methanobacterium
           Thermoautotrophicum
 pdb|1F07|C Chain C, Structure Of Coenzyme F420 Dependent
           Tetrahydromethanopterin Reductase From Methanobacterium
           Thermoautotrophicum
 pdb|1F07|D Chain D, Structure Of Coenzyme F420 Dependent
           Tetrahydromethanopterin Reductase From Methanobacterium
           Thermoautotrophicum
          Length = 321

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 244 QKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHIS 289
            K V+ T   + E   T+ +  G T+P+  S  IT     TLD +S
Sbjct: 39  NKNVYETLALIAEGTETIKLGPGVTNPYVRSPAITASAIATLDELS 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,894,144
Number of Sequences: 62578
Number of extensions: 329949
Number of successful extensions: 677
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 2
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)