Query 020838
Match_columns 320
No_of_seqs 211 out of 464
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.6E-57 3.5E-62 429.7 20.9 214 106-319 2-279 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.2E-52 4.8E-57 400.2 24.7 241 77-318 2-304 (308)
3 PRK12895 ubiA prenyltransferas 99.9 9.4E-25 2E-29 208.0 21.9 205 88-301 3-254 (286)
4 PRK13106 ubiA prenyltransferas 99.9 2.4E-24 5.2E-29 206.3 21.5 209 84-301 11-272 (300)
5 COG0382 UbiA 4-hydroxybenzoate 99.9 9.9E-24 2.2E-28 199.6 22.2 205 86-300 11-262 (289)
6 PRK13595 ubiA prenyltransferas 99.9 3.9E-24 8.5E-29 204.2 18.0 177 84-264 8-231 (292)
7 PRK12888 ubiA prenyltransferas 99.9 2.4E-23 5.1E-28 197.8 23.0 208 88-301 2-255 (284)
8 TIGR01475 ubiA_other putative 99.9 2.7E-23 5.8E-28 196.0 22.7 204 88-301 2-254 (282)
9 PRK12874 ubiA prenyltransferas 99.9 5.1E-23 1.1E-27 196.1 24.5 214 82-301 2-263 (291)
10 PLN02809 4-hydroxybenzoate non 99.9 5.5E-23 1.2E-27 195.9 22.1 209 86-301 4-261 (289)
11 PRK12870 ubiA 4-hydroxybenzoat 99.9 8E-23 1.7E-27 194.5 22.1 205 86-301 7-263 (290)
12 PRK12876 ubiA prenyltransferas 99.9 1.3E-22 2.8E-27 194.5 22.8 214 82-300 2-270 (300)
13 PRK12884 ubiA prenyltransferas 99.9 3.4E-22 7.5E-27 187.4 23.5 217 86-311 2-264 (279)
14 PRK12847 ubiA 4-hydroxybenzoat 99.9 6.7E-22 1.4E-26 187.0 23.2 207 84-301 3-260 (285)
15 PRK09573 (S)-2,3-di-O-geranylg 99.9 6.5E-22 1.4E-26 186.3 22.4 196 88-292 3-241 (279)
16 TIGR01476 chlor_syn_BchG bacte 99.9 1.4E-22 3.1E-27 191.0 17.8 178 89-268 1-227 (283)
17 PRK13105 ubiA prenyltransferas 99.9 4.2E-22 9.2E-27 189.5 20.6 172 89-267 2-225 (282)
18 PRK12886 ubiA prenyltransferas 99.9 1.5E-21 3.2E-26 186.0 23.5 209 84-300 4-257 (291)
19 PRK12882 ubiA prenyltransferas 99.9 1.1E-21 2.4E-26 184.3 21.8 170 88-264 4-219 (276)
20 PRK12392 bacteriochlorophyll c 99.9 1.1E-21 2.4E-26 190.3 20.9 208 84-296 8-271 (331)
21 PRK12878 ubiA 4-hydroxybenzoat 99.9 6.3E-21 1.4E-25 183.6 25.8 223 83-312 25-302 (314)
22 PLN00012 chlorophyll synthetas 99.9 2.6E-21 5.6E-26 190.6 21.4 178 84-263 81-313 (375)
23 PRK12848 ubiA 4-hydroxybenzoat 99.9 4.8E-21 1E-25 181.2 22.4 204 87-301 4-257 (282)
24 PRK07566 bacteriochlorophyll/c 99.9 2.6E-21 5.7E-26 185.9 20.0 177 86-264 25-251 (314)
25 TIGR02056 ChlG chlorophyll syn 99.9 8.3E-21 1.8E-25 181.8 22.2 180 84-265 12-246 (306)
26 PRK12873 ubiA prenyltransferas 99.9 1.5E-20 3.3E-25 179.9 22.7 214 87-309 6-274 (294)
27 TIGR01474 ubiA_proteo 4-hydrox 99.9 3.5E-20 7.6E-25 175.4 23.0 215 90-312 6-270 (281)
28 PRK12883 ubiA prenyltransferas 99.9 3E-20 6.5E-25 174.7 22.0 163 88-255 3-207 (277)
29 PRK06080 1,4-dihydroxy-2-napht 99.9 3.6E-20 7.7E-25 175.2 21.6 178 88-269 3-235 (293)
30 PRK12875 ubiA prenyltransferas 99.9 1.6E-20 3.5E-25 178.6 18.9 179 84-267 4-230 (282)
31 PRK12872 ubiA prenyltransferas 99.9 3E-20 6.5E-25 174.4 18.4 205 86-300 2-256 (285)
32 PRK04375 protoheme IX farnesyl 99.8 1.7E-19 3.7E-24 171.8 21.1 208 85-300 7-263 (296)
33 TIGR01473 cyoE_ctaB protoheme 99.8 2.7E-19 5.8E-24 168.7 21.2 203 90-299 2-253 (280)
34 PRK12869 ubiA protoheme IX far 99.8 2.9E-19 6.4E-24 168.9 20.0 215 88-311 2-269 (279)
35 PRK12871 ubiA prenyltransferas 99.8 7E-19 1.5E-23 168.4 22.4 207 87-301 4-270 (297)
36 PRK05951 ubiA prenyltransferas 99.8 5.7E-19 1.2E-23 168.4 20.3 211 87-301 3-269 (296)
37 PRK13362 protoheme IX farnesyl 99.8 1.6E-17 3.5E-22 159.7 23.3 165 84-253 9-221 (306)
38 PRK13387 1,4-dihydroxy-2-napht 99.8 2.3E-17 5E-22 159.2 19.1 177 88-267 3-254 (317)
39 PRK07419 1,4-dihydroxy-2-napht 99.8 5.4E-17 1.2E-21 156.0 19.7 180 86-268 10-240 (304)
40 PRK13592 ubiA prenyltransferas 99.8 5.7E-17 1.2E-21 155.3 19.5 178 81-263 2-234 (299)
41 PRK13591 ubiA prenyltransferas 99.7 1.3E-16 2.9E-21 153.5 19.0 87 216-302 193-279 (307)
42 PLN02922 prenyltransferase 99.7 1.5E-15 3.2E-20 146.7 22.3 177 87-269 14-255 (315)
43 TIGR02235 menA_cyano-plnt 1,4- 99.7 1.1E-15 2.4E-20 145.6 19.6 175 91-268 2-227 (285)
44 TIGR00751 menA 1,4-dihydroxy-2 99.7 5.4E-15 1.2E-19 140.9 19.2 169 96-268 1-230 (284)
45 COG1575 MenA 1,4-dihydroxy-2-n 99.6 6.6E-14 1.4E-18 134.4 19.4 179 87-269 7-243 (303)
46 PF01040 UbiA: UbiA prenyltran 99.6 4.8E-14 1E-18 128.2 17.2 120 130-249 26-193 (257)
47 PLN02776 prenyltransferase 99.5 1E-12 2.3E-17 128.4 21.3 198 95-301 2-249 (341)
48 PRK08238 hypothetical protein; 99.2 3.3E-10 7.2E-15 115.3 15.9 178 51-235 156-377 (479)
49 COG0109 CyoE Polyprenyltransfe 99.2 5.8E-09 1.3E-13 100.5 21.6 158 84-252 14-225 (304)
50 KOG1381 Para-hydroxybenzoate-p 99.0 2.1E-09 4.5E-14 102.4 11.0 208 88-300 64-318 (353)
51 PRK12324 phosphoribose diphosp 98.9 7.5E-08 1.6E-12 92.7 18.7 91 84-178 7-106 (295)
52 KOG4581 Predicted membrane pro 96.1 0.094 2E-06 49.9 12.0 48 220-267 247-294 (359)
53 KOG1380 Heme A farnesyltransfe 94.3 0.016 3.4E-07 57.3 0.8 85 82-172 88-181 (409)
54 TIGR02056 ChlG chlorophyll syn 86.3 4.7 0.0001 39.0 9.2 56 209-264 61-118 (306)
55 PRK12884 ubiA prenyltransferas 84.4 8 0.00017 36.4 9.6 49 211-260 46-97 (279)
56 PRK12887 ubiA tocopherol phyty 75.1 23 0.0005 34.5 9.6 37 221-258 72-111 (308)
57 PRK12872 ubiA prenyltransferas 71.9 32 0.00069 32.3 9.5 29 207-235 41-69 (285)
58 PRK12882 ubiA prenyltransferas 71.7 26 0.00056 33.1 8.9 47 212-259 48-97 (276)
59 PRK12324 phosphoribose diphosp 71.1 27 0.00059 34.0 9.0 50 213-262 57-110 (295)
60 PRK09573 (S)-2,3-di-O-geranylg 70.3 34 0.00074 32.3 9.4 48 211-259 46-96 (279)
61 PRK13591 ubiA prenyltransferas 69.5 87 0.0019 30.9 12.1 42 187-233 48-89 (307)
62 PRK12847 ubiA 4-hydroxybenzoat 69.2 95 0.0021 29.5 12.2 47 212-258 55-105 (285)
63 PLN00012 chlorophyll synthetas 68.6 35 0.00075 34.4 9.4 38 213-251 134-174 (375)
64 TIGR01475 ubiA_other putative 66.4 33 0.00071 32.5 8.4 44 211-254 45-92 (282)
65 PRK07566 bacteriochlorophyll/c 63.2 40 0.00088 32.7 8.5 47 213-260 76-125 (314)
66 COG0382 UbiA 4-hydroxybenzoate 63.0 48 0.001 31.5 8.9 51 212-262 57-111 (289)
67 PRK12392 bacteriochlorophyll c 60.9 60 0.0013 32.0 9.3 49 218-267 66-117 (331)
68 PLN02809 4-hydroxybenzoate non 59.2 55 0.0012 31.6 8.6 46 212-257 55-104 (289)
69 PRK12883 ubiA prenyltransferas 59.1 66 0.0014 30.3 9.0 44 214-258 49-95 (277)
70 TIGR01476 chlor_syn_BchG bacte 58.2 30 0.00066 32.7 6.6 46 212-258 48-96 (283)
71 PRK08238 hypothetical protein; 58.1 60 0.0013 33.7 9.1 51 213-263 237-291 (479)
72 PRK13595 ubiA prenyltransferas 57.2 77 0.0017 31.0 9.2 54 208-262 53-109 (292)
73 PRK12895 ubiA prenyltransferas 57.1 80 0.0017 30.6 9.3 48 213-260 48-99 (286)
74 PF01040 UbiA: UbiA prenyltran 57.0 77 0.0017 28.5 8.8 22 212-233 33-54 (257)
75 TIGR01473 cyoE_ctaB protoheme 56.4 90 0.0019 29.5 9.4 48 211-258 44-95 (280)
76 PRK12888 ubiA prenyltransferas 56.2 1E+02 0.0022 29.6 9.9 43 212-254 49-95 (284)
77 PRK13106 ubiA prenyltransferas 53.8 44 0.00095 32.5 6.9 43 211-253 58-104 (300)
78 TIGR00751 menA 1,4-dihydroxy-2 53.0 2.2E+02 0.0047 27.4 12.7 101 199-301 24-135 (284)
79 TIGR01474 ubiA_proteo 4-hydrox 52.4 86 0.0019 29.8 8.6 47 213-259 51-101 (281)
80 PRK12869 ubiA protoheme IX far 50.4 51 0.0011 31.3 6.7 47 211-257 45-95 (279)
81 PRK12873 ubiA prenyltransferas 49.4 61 0.0013 31.6 7.1 47 212-258 54-104 (294)
82 COG1575 MenA 1,4-dihydroxy-2-n 48.6 1.2E+02 0.0025 30.1 8.9 35 133-167 182-221 (303)
83 PRK12848 ubiA 4-hydroxybenzoat 48.1 1.2E+02 0.0027 28.7 9.0 47 213-259 53-103 (282)
84 COG2149 Predicted membrane pro 45.6 2E+02 0.0043 24.8 8.7 31 129-159 58-93 (120)
85 PRK13592 ubiA prenyltransferas 44.9 48 0.001 32.6 5.6 51 211-261 55-107 (299)
86 PF05106 Phage_holin_3: Phage 44.7 1.3E+02 0.0028 24.7 7.3 57 79-140 6-62 (100)
87 PF06645 SPC12: Microsomal sig 42.9 82 0.0018 24.6 5.7 29 243-271 5-33 (76)
88 PLN02922 prenyltransferase 42.7 3.4E+02 0.0073 26.6 12.9 20 137-156 198-217 (315)
89 PRK12875 ubiA prenyltransferas 38.8 1.8E+02 0.0039 28.0 8.5 18 220-237 63-80 (282)
90 PLN02776 prenyltransferase 38.1 2.3E+02 0.0049 28.4 9.3 49 208-256 35-87 (341)
91 PRK12870 ubiA 4-hydroxybenzoat 37.7 1.3E+02 0.0027 29.0 7.3 47 213-259 57-107 (290)
92 KOG4016 Synaptic vesicle prote 37.6 3.7E+02 0.0079 25.6 11.9 79 149-227 87-170 (233)
93 PF04341 DUF485: Protein of un 35.6 2.3E+02 0.0049 22.6 7.6 36 121-156 52-87 (91)
94 PRK06080 1,4-dihydroxy-2-napht 35.2 3E+02 0.0066 26.0 9.4 79 212-294 48-132 (293)
95 PRK05951 ubiA prenyltransferas 34.8 4.2E+02 0.0091 25.4 14.2 84 213-300 51-141 (296)
96 cd00867 Trans_IPPS Trans-Isopr 33.2 55 0.0012 29.4 3.9 42 209-250 153-204 (236)
97 PRK12871 ubiA prenyltransferas 32.0 4.8E+02 0.01 25.2 12.2 45 215-260 55-112 (297)
98 PRK12886 ubiA prenyltransferas 30.2 3.2E+02 0.0069 26.3 8.7 38 213-251 53-95 (291)
99 PRK12874 ubiA prenyltransferas 30.1 3.9E+02 0.0084 25.7 9.3 42 214-255 59-104 (291)
100 PRK10581 geranyltranstransfera 29.8 91 0.002 30.2 4.9 52 207-258 208-270 (299)
101 PRK12878 ubiA 4-hydroxybenzoat 29.5 5.4E+02 0.012 25.1 11.0 43 212-254 82-128 (314)
102 PRK13362 protoheme IX farnesyl 29.2 2.1E+02 0.0045 27.8 7.3 48 211-258 56-107 (306)
103 PRK04375 protoheme IX farnesyl 27.5 2.4E+02 0.0051 27.1 7.3 45 213-257 55-103 (296)
104 COG0600 TauC ABC-type nitrate/ 27.2 5.5E+02 0.012 24.5 9.6 35 204-238 128-162 (258)
105 PRK07419 1,4-dihydroxy-2-napht 26.0 6.2E+02 0.014 24.6 14.3 97 199-301 44-145 (304)
106 TIGR02235 menA_cyano-plnt 1,4- 25.1 6.2E+02 0.013 24.3 12.5 99 199-301 31-132 (285)
107 PRK10299 PhoPQ regulatory prot 23.7 89 0.0019 22.7 2.7 15 141-155 19-33 (47)
108 PRK13105 ubiA prenyltransferas 23.1 6.9E+02 0.015 24.1 11.9 17 140-156 173-189 (282)
109 PF12666 PrgI: PrgI family pro 21.0 4.1E+02 0.0089 20.7 6.8 71 222-300 4-74 (93)
110 COG4956 Integral membrane prot 20.7 8.9E+02 0.019 24.5 12.8 69 89-159 3-78 (356)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.6e-57 Score=429.72 Aligned_cols=214 Identities=67% Similarity=1.057 Sum_probs=206.2
Q ss_pred HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----------------------------
Q 020838 106 SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------------------------- 156 (320)
Q Consensus 106 ~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk----------------------------- 156 (320)
++++.+++|+++.+|.++.++.++++++++++|||+|++|+|||||+||||
T Consensus 2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg 81 (280)
T PLN02878 2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS 81 (280)
T ss_pred chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 577889999999899988899999999999999999999999999999999
Q ss_pred -----------------------------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020838 157 -----------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFA 207 (320)
Q Consensus 157 -----------------------------iP~~RlKr~~~la~~~Il~v~a~iv~Lg~~~h~~~~vlg~~~~~~~~v~~l 207 (320)
+||.|+||+++++++|++++|++++++|+|+|+++.++|++..+++++++.
T Consensus 82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~ 161 (280)
T PLN02878 82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA 161 (280)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence 699999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHH
Q 020838 208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDH 287 (320)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vla~ 287 (320)
++++++|+.+++++||+||+||||++|++|+|+++|+|++.++|..++.++|++++++|++++..|+++++++||++++.
T Consensus 162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~ 241 (280)
T PLN02878 162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS 241 (280)
T ss_pred HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCc------hHHHHHHHHHHHhhccCC
Q 020838 288 ISCCPLNFIPLNDS------FFCLYNLRAVYFVLLPHR 319 (320)
Q Consensus 288 ~L~~~~~~Vd~~~~------~~~~w~lf~~~y~l~p~~ 319 (320)
+||+|+++||+++| |||||||||+||+++|+.
T Consensus 242 ~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~ 279 (280)
T PLN02878 242 ILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLV 279 (280)
T ss_pred HHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999997 469999999999999985
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.2e-52 Score=400.17 Aligned_cols=241 Identities=38% Similarity=0.602 Sum_probs=220.0
Q ss_pred CCCchhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcc
Q 020838 77 PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155 (320)
Q Consensus 77 ~~~~~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~-~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EID 155 (320)
|++.+++++.++++++||+||||++|+.+++++++++|.+...+. ....+..++.+++++.++|.|++|+|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 678999999999999999999999999999999999876543332 2225667778899999999999999999999999
Q ss_pred c-------------------------------------------------------cccccchhhHHHHHHHHHHHHHHH
Q 020838 156 K-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAVV 180 (320)
Q Consensus 156 k-------------------------------------------------------iP~~RlKr~~~la~~~Il~v~a~i 180 (320)
| .||.|+||.|+....|++.+++.+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i 161 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVI 161 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHH
Confidence 8 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 020838 181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 181 v~Lg~~~h~~~~vlg~~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~ 260 (320)
+++|+|.|++.. .+.+...+..++++++++++++++++++||+||+||||+.|+||+|+++|+|++.+++.+++.++|+
T Consensus 162 ~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~ 240 (308)
T PRK12887 162 VNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240 (308)
T ss_pred HHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence 999999987654 5555567788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHHHhhccccccCCCCc-----h-HHHHHHHHHHHhhccC
Q 020838 261 VAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDS-----F-FCLYNLRAVYFVLLPH 318 (320)
Q Consensus 261 ~~il~g~~~~~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~-----~-~~~w~lf~~~y~l~p~ 318 (320)
++++.|+.....+++.++++||++++.++|||+++||++|| | ||||||||+||+++|+
T Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~ 304 (308)
T PRK12887 241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPI 304 (308)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999987 4 6999999999999996
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=9.4e-25 Score=207.97 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=149.2
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP 158 (320)
++.|.|+.||+..+.....++.|+++|.+.. .+ ...++...+++.+++++++++||++|+|||| +|
T Consensus 3 ~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~---~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp 77 (286)
T PRK12895 3 FRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IH---PIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV 77 (286)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CC---HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence 5678899999888888888888888874321 12 1123345667788999999999999999999 99
Q ss_pred cccchhhHHHHHHHHHHHHHHHH-----HH-------HH-----HHHHH------HHHhcC----CC---------Ccc-
Q 020838 159 LLRWKRFAVAAAMCILAVRAVVV-----QL-------AF-----YLHMQ------THVYRR----PA---------VFS- 201 (320)
Q Consensus 159 ~~RlKr~~~la~~~Il~v~a~iv-----~L-------g~-----~~h~~------~~vlg~----~~---------~~~- 201 (320)
+||+++..++....+....+..+ ++ .. |.++. ..++|. +. ..+
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~~ 157 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFPY 157 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCCc
Confidence 99999987666553332222111 11 11 11111 011111 00 112
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHH
Q 020838 202 -KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVY 280 (320)
Q Consensus 202 -~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~ 280 (320)
...+++...+++|+.+.|++||+||+|+||+.|++|+|+++|++++.+++..++.++.+..++.|.... ++ .+.+
T Consensus 158 ~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~---~y~~ 233 (286)
T PRK12895 158 NLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TL---WYLA 233 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hH---HHHH
Confidence 223456677789999999999999999999999999999999999999998899999888888887654 33 6788
Q ss_pred HHHHHHHHhhccccccCCCCc
Q 020838 281 FSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 281 ~h~vla~~L~~~~~~Vd~~~~ 301 (320)
+-++.+..+.|||+.+|++|.
T Consensus 234 ~~~~~~~~l~~q~~~~~~~~~ 254 (286)
T PRK12895 234 ALIIIYTLVIYQHLIIDPRNP 254 (286)
T ss_pred HHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999998874
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=2.4e-24 Score=206.33 Aligned_cols=209 Identities=15% Similarity=0.106 Sum_probs=152.1
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
.++++++|.|++||++.+++....+.|+++|.+... + +..++.++++..++++++|++|||+|+|||+
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~---~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--P---ISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 456789999999999999999989999888744322 2 2223456778888999999999999999999
Q ss_pred --cccccchhhHHHHHHHHHHHH----HHHHH--------HHH-HHHHHHHHhcCCC---------------------Cc
Q 020838 157 --LPLLRWKRFAVAAAMCILAVR----AVVVQ--------LAF-YLHMQTHVYRRPA---------------------VF 200 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~----a~iv~--------Lg~-~~h~~~~vlg~~~---------------------~~ 200 (320)
+|+||++.+.++......... +..++ ++. ....++..+.... .+
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g 165 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG 165 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988766543211110 01010 000 0011111111000 01
Q ss_pred ----------chHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 020838 201 ----------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (320)
Q Consensus 201 ----------~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~ 270 (320)
+.+.+++....++|+.++|++||+||+|+||+.|++|+|+++| +++.+++..++.++.+...+.|....
T Consensus 166 ~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~ 244 (300)
T PRK13106 166 LYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYG 244 (300)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1222344555678999999999999999999999999999999 99999999999999999998888777
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 271 FAWSKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 271 ~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.++ .+..+-.+.+.++.|||+.++++++
T Consensus 245 lg~---~y~~~~~~~~~~l~~~~~~~~~~~~ 272 (300)
T PRK13106 245 LGP---IAIAATILHGLIMAYAYYLASKKGD 272 (300)
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHhCCchH
Confidence 666 6777888888999999999988844
No 5
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.92 E-value=9.9e-24 Score=199.57 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=151.0
Q ss_pred HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------- 156 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk--------- 156 (320)
+..+.+.|+.||++++...++...+..++.. .++. +..++.+++++.+++++++++||++|+||||
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence 3445788888999999888888888777642 2221 4456677888899999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHH-----HHHH----------HHHHHHHHhcCC--------------------CC--
Q 020838 157 LPLLRWKRFAVAAAMCILAVRAVVV-----QLAF----------YLHMQTHVYRRP--------------------AV-- 199 (320)
Q Consensus 157 iP~~RlKr~~~la~~~Il~v~a~iv-----~Lg~----------~~h~~~~vlg~~--------------------~~-- 199 (320)
+|+||++++..+....++.+.+.++ +.++ +.| ...+..+ ..
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~ 163 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAVGG 163 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999987665543332222111 0000 111 1111111 11
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838 200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT 278 (320)
Q Consensus 200 -~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~ 278 (320)
.+.+.+++..+..+|+++++++||+||+||||+.|++|+|+++|++++.+++...+ .+.+....++....... .++
T Consensus 164 ~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~ 240 (289)
T COG0382 164 SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIY 240 (289)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHH
Confidence 25667788899999999999999999999999999999999999999999999888 55566665665433221 367
Q ss_pred HHHHHHHHHHhhccccccCCCC
Q 020838 279 VYFSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 279 ~~~h~vla~~L~~~~~~Vd~~~ 300 (320)
..+..+.+..+++|+..+|.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ 262 (289)
T COG0382 241 LLGLLVAALLLLYQILIVDVRD 262 (289)
T ss_pred HHHHHHHHHHHHHHHHHhcccC
Confidence 8899999999999999998764
No 6
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=3.9e-24 Score=204.22 Aligned_cols=177 Identities=20% Similarity=0.192 Sum_probs=116.4
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
+.+.++.+++.+||.+|+.+..++.+|+..+.+ ..|+.+.. ++..+..++..|.++|++|||||+|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 345677789999999999999999999976522 22321122 2345666677899999999999999999
Q ss_pred cccccchhhHHHHHH--HHHH------HHHHHH-HH----------HHHHHHH--HHHhcCCCC----------------
Q 020838 157 LPLLRWKRFAVAAAM--CILA------VRAVVV-QL----------AFYLHMQ--THVYRRPAV---------------- 199 (320)
Q Consensus 157 iP~~RlKr~~~la~~--~Il~------v~a~iv-~L----------g~~~h~~--~~vlg~~~~---------------- 199 (320)
+|.+|+++....... +.+. ..+..+ ++ ..+.|.. ...+.+|..
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~ 163 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA 163 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence 889999888543321 1110 001111 00 0011110 011111111
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838 200 ---FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 200 ---~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il 264 (320)
+....+.......+|++++|++||+||+||||+.|+||+|+++|+|++.++|..+..++-+....
T Consensus 164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~ 231 (292)
T PRK13595 164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP 231 (292)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence 11112222344568899999999999999999999999999999999999999777666555443
No 7
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=2.4e-23 Score=197.80 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=147.7
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------c
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVE-KVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~-~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------i 157 (320)
+++++|+.||++.+.+...++.+.+++.. ....++ +..++.++++++++++.+|.+|||+|+|||+ +
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 45778888887777766666666666531 111223 2223456788889999999999999999999 9
Q ss_pred ccccchhhHHHHHHHHHHHHHH------------HHHHH-----HHHHHHH------HHhcCC-------------CCcc
Q 020838 158 PLLRWKRFAVAAAMCILAVRAV------------VVQLA-----FYLHMQT------HVYRRP-------------AVFS 201 (320)
Q Consensus 158 P~~RlKr~~~la~~~Il~v~a~------------iv~Lg-----~~~h~~~------~vlg~~-------------~~~~ 201 (320)
|++|++.+.++...+.....+. +..++ .|.++.. .+.|.+ ...+
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g~~~ 158 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWS 158 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999998876554422211110 00111 1221110 011110 1233
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHH
Q 020838 202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYF 281 (320)
Q Consensus 202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~ 281 (320)
...+++...+.+|+.+.++++|+||+|+||+.|++|+|+++|+|++.+++..++.++++...+.|.....++ ++.++
T Consensus 159 ~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~ 235 (284)
T PRK12888 159 WPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIG 235 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHH
Confidence 445566667788999999999999999999999999999999999999998888888888888888777776 66778
Q ss_pred HHHHHHHhhccccccCCCCc
Q 020838 282 SFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 282 h~vla~~L~~~~~~Vd~~~~ 301 (320)
-++.+..+.|||+.+|++|.
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~ 255 (284)
T PRK12888 236 LAITAGAFAYEHAIVSPTDL 255 (284)
T ss_pred HHHHHHHHHHHHHHcCccCH
Confidence 88889999999999999873
No 8
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.92 E-value=2.7e-23 Score=196.01 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=149.6
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP 158 (320)
++.|+|++||++.++....+..|+++|.+... + +..++..+++..+++++++.+|||+|+|+|+ +|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGLP--G---LKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 56889999999999998888888888754322 2 2223456778888999999999999999999 99
Q ss_pred cccchhhHHHHHHHHHHHHH----HHH-----------HHHHHHHHHHHHhcCCC-----------------------Cc
Q 020838 159 LLRWKRFAVAAAMCILAVRA----VVV-----------QLAFYLHMQTHVYRRPA-----------------------VF 200 (320)
Q Consensus 159 ~~RlKr~~~la~~~Il~v~a----~iv-----------~Lg~~~h~~~~vlg~~~-----------------------~~ 200 (320)
++|++++.++....+..+.+ ..+ .+..+.|. ..+.... ..
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~--~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~ 154 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYP--YTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTI 154 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hHhccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99998887555432221111 000 00011221 1111100 11
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838 201 S--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT 278 (320)
Q Consensus 201 ~--~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~ 278 (320)
+ ...+.+....++|+.+.+++||+||+|+|++.|++|+|+++|+|++.++...+..++++..++.+...+.++ ++
T Consensus 155 ~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y 231 (282)
T TIGR01475 155 SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IA 231 (282)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HH
Confidence 2 333445556778999999999999999999999999999999999999999999999988888887766665 66
Q ss_pred HHHHHHHHHHhhccccccCCCCc
Q 020838 279 VYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 279 ~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.++..+.+..++++.+.+|++|+
T Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~ 254 (282)
T TIGR01475 232 LLALILIGLILAYEHYIVDPGDQ 254 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCH
Confidence 77777888899999999988874
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=5.1e-23 Score=196.11 Aligned_cols=214 Identities=16% Similarity=0.108 Sum_probs=150.9
Q ss_pred hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc---CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--
Q 020838 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV---SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-- 156 (320)
Q Consensus 82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~---~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-- 156 (320)
++.++++++|+|++||++.+++...++.++++|.+.. ..++ +..++.+++++.+++++.+++|||+|+|||+
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFG---FKLLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCC---HHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 4567789999999999999999999999998874211 1223 2334556777778899999999999999999
Q ss_pred -------cccccchhhHHHHHHHHHHHHHHHH-----HH------HH--HHHHHHHHhcCCC------------------
Q 020838 157 -------LPLLRWKRFAVAAAMCILAVRAVVV-----QL------AF--YLHMQTHVYRRPA------------------ 198 (320)
Q Consensus 157 -------iP~~RlKr~~~la~~~Il~v~a~iv-----~L------g~--~~h~~~~vlg~~~------------------ 198 (320)
+|+||++.+.++....++.+.+..+ ++ +. +...++..++...
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~ 158 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGV 158 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH
Confidence 9999998887655543322211111 00 00 1111111111100
Q ss_pred -----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 020838 199 -----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAW 273 (320)
Q Consensus 199 -----~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~ 273 (320)
..+...+++...+++|+.+.+++++++|+|+||+.|++|+|+++|+|++.+++...+.++.+..++.|......+
T Consensus 159 ~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (291)
T PRK12874 159 VAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL 238 (291)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 123333455566779999999999999999999999999999999999999887777777766666666554444
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 274 SKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 274 ~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.++++..+.+..++++++.++.+|+
T Consensus 239 ---~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (291)
T PRK12874 239 ---FAYLGVIVSALILLYEHYLVRKDFK 263 (291)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5566777778889999999876543
No 10
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.91 E-value=5.5e-23 Score=195.91 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=142.9
Q ss_pred HHHHHhhhhhccchhHHhHHHHHH---HHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVS---VALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~---g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------ 156 (320)
+.++.|+|++|.|...++.+..+- +..++.......+ +..++..++++.+++++.|++||++|+|||+
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~---~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD---LKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 356788999999998888776622 2222221111112 2223456777788999999999999999998
Q ss_pred ---cccccchhhHHHHHHHHHHHHHHHH-----H-------HHH-HHHHHHHHh----------cCCC------------
Q 020838 157 ---LPLLRWKRFAVAAAMCILAVRAVVV-----Q-------LAF-YLHMQTHVY----------RRPA------------ 198 (320)
Q Consensus 157 ---iP~~RlKr~~~la~~~Il~v~a~iv-----~-------Lg~-~~h~~~~vl----------g~~~------------ 198 (320)
+|+||++.+.++....++.+.+..+ + .+. +...++..+ |.+.
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~ 160 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVK 160 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999887766543332221111 0 011 111111111 1000
Q ss_pred -CcchHHH-HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838 199 -VFSKPLI-FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276 (320)
Q Consensus 199 -~~~~~v~-~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~ 276 (320)
..+...+ .+.....+|+.+.++++++||+|+||+.|++|+|+++|++...+++. ++.++++..+.+|.....++
T Consensus 161 g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~~~~--- 236 (289)
T PLN02809 161 GSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAGLGW--- 236 (289)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhcCcH---
Confidence 1112222 25555667899999999999999999999999999999998888884 77778888888888766555
Q ss_pred HHHHHHHHHHHHhhccccccCCCCc
Q 020838 277 ITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 277 ~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.+.+++++.+..|+||++.||++|.
T Consensus 237 ~~~~~~~~~~~~l~~~~~~v~~~~~ 261 (289)
T PLN02809 237 PYYAGLAAAAGHLAWQIQTVDLSSR 261 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 5567999999999999999999874
No 11
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.91 E-value=8e-23 Score=194.49 Aligned_cols=205 Identities=15% Similarity=0.060 Sum_probs=142.6
Q ss_pred HHHHHhhhhhccchhHHhH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838 86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~---l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------ 156 (320)
+.+++|+|++|||+..++. ++++.|.++|.+.. .+ +..++.++++.++++++.|++|||+|+|||+
T Consensus 7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~---~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~ 81 (290)
T PRK12870 7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PP---LPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR 81 (290)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CC---HHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence 4677999999999988887 46777777764332 22 2223445677778899999999999999997
Q ss_pred ---cccccchhhHHHHHHHHHHHHHHHH-----HHH----------HHHHHHHHHhcC---C------------------
Q 020838 157 ---LPLLRWKRFAVAAAMCILAVRAVVV-----QLA----------FYLHMQTHVYRR---P------------------ 197 (320)
Q Consensus 157 ---iP~~RlKr~~~la~~~Il~v~a~iv-----~Lg----------~~~h~~~~vlg~---~------------------ 197 (320)
+|+||++.+.++.....+...+.++ +++ .++| +..+.. |
T Consensus 82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~~a 159 (290)
T PRK12870 82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISWSA 159 (290)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHHHH
Confidence 9999999887655543332222111 000 0112 110100 0
Q ss_pred --CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHH
Q 020838 198 --AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSK 275 (320)
Q Consensus 198 --~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~ 275 (320)
...+...+++...+++|+.+.++++++||+|+|++.|++|+|+++|+|++.+++. ++.++......+|...+.++
T Consensus 160 ~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-- 236 (290)
T PRK12870 160 VTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL-- 236 (290)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH--
Confidence 0123445566677789999999999999999999999999999999999998887 55666666666777665554
Q ss_pred HHHHHHHHHHHHHhhcccccc--CCCCc
Q 020838 276 LITVYFSFTLDHISCCPLNFI--PLNDS 301 (320)
Q Consensus 276 ~~~~~~h~vla~~L~~~~~~V--d~~~~ 301 (320)
.+..+-.+.+..+.||+..+ |.+|+
T Consensus 237 -~y~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (290)
T PRK12870 237 -PFWIGLAIAAVLWARQYRRLRQANLPP 263 (290)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccCCCh
Confidence 55566667788899999999 54443
No 12
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.3e-22 Score=194.51 Aligned_cols=214 Identities=13% Similarity=0.049 Sum_probs=144.0
Q ss_pred hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhh--cccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--
Q 020838 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAV--EKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-- 156 (320)
Q Consensus 82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~--~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-- 156 (320)
++++.++ .++||+ ||+++.+++..+..+.+. |...+ ++...+..++++.++++.+++++|++|||+|+|||+
T Consensus 2 ~~~~~~~-~~i~~~--ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQ-QLINCK--YALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 4567776 899999 999999999888776642 11112 111124445677899999999999999999999999
Q ss_pred -------cccccchhhHHHHHHHHHHHHHHH----H-HH-------HHH-HHHHHH----------HhcCCC--------
Q 020838 157 -------LPLLRWKRFAVAAAMCILAVRAVV----V-QL-------AFY-LHMQTH----------VYRRPA-------- 198 (320)
Q Consensus 157 -------iP~~RlKr~~~la~~~Il~v~a~i----v-~L-------g~~-~h~~~~----------vlg~~~-------- 198 (320)
+|.||++.+.++....+..+.+.+ + ++ +.. ...++. ++|.+.
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~~ 158 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNF 158 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999988765554322111111 1 11 110 011111 111100
Q ss_pred ---C---cch----HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 199 ---V---FSK----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 199 ---~---~~~----~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
. .+. ..++.+..+++|..+.|++|++||+||||+.|++|+|+++|++++.+++..++.++.+..+++|..
T Consensus 159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~ 238 (300)
T PRK12876 159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYF 238 (300)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111 122344556667779999999999999999999999999999999999999999988888888887
Q ss_pred CcchhHHHHHHHHHHHHHHHh-hccc-cccCCCC
Q 020838 269 SPFAWSKLITVYFSFTLDHIS-CCPL-NFIPLND 300 (320)
Q Consensus 269 ~~~~~~~~~~~~~h~vla~~L-~~~~-~~Vd~~~ 300 (320)
.+.++ ..+..+-++.+..+ .+|| +.+|.++
T Consensus 239 ~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~ 270 (300)
T PRK12876 239 VSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKK 270 (300)
T ss_pred hhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 66554 23455555444444 5666 7775543
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.90 E-value=3.4e-22 Score=187.44 Aligned_cols=217 Identities=18% Similarity=0.228 Sum_probs=144.1
Q ss_pred HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cc
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP 158 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP 158 (320)
+++++++|++||++.+++.+..+.|+++|.+. ++ ...++.++++..++.++++.+|||+|+|+|+ +|
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~---~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LP---LDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cc---hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 36789999999999999999999999887442 22 1123445677788888999999999999998 89
Q ss_pred cccchhhHHHHHHHHHHHHHHHH----H--------HHH-HHHHHHHHhc-CCCC----------------------cch
Q 020838 159 LLRWKRFAVAAAMCILAVRAVVV----Q--------LAF-YLHMQTHVYR-RPAV----------------------FSK 202 (320)
Q Consensus 159 ~~RlKr~~~la~~~Il~v~a~iv----~--------Lg~-~~h~~~~vlg-~~~~----------------------~~~ 202 (320)
.+|++.+.++....++.+.+.++ + ++. +...++..++ .+.. .+.
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 155 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE 155 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence 99998887655443322221111 0 000 1111121112 1110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q 020838 203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFS 282 (320)
Q Consensus 203 ~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h 282 (320)
..+++...+++|+.+.++.+|++|+|+||+.|++|+|+++|+|++.+++..++.+.++..++.++.....| .+.++-
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~ 232 (279)
T PRK12884 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPV 232 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence 34445556678889999999999999999999999999999999999999888888887665554432233 444454
Q ss_pred HHHHHHhhccc-cccCCCC--chHHHHHHHHH
Q 020838 283 FTLDHISCCPL-NFIPLND--SFFCLYNLRAV 311 (320)
Q Consensus 283 ~vla~~L~~~~-~~Vd~~~--~~~~~w~lf~~ 311 (320)
.+....+.+++ +.++.+| +++..++.+..
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 264 (279)
T PRK12884 233 LVADLIFLYSAYSLLRSQDRETIRKVRKITLT 264 (279)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55555665665 5555544 24544444443
No 14
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.90 E-value=6.7e-22 Score=186.95 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=141.1
Q ss_pred HHHHHHHhhhhhccchhHHhH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc----
Q 020838 84 VINALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~---l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---- 156 (320)
++.++++++|++|||+..++. ++++.|+++|.... ..+ +...+..++++.+++++.|.+|||+|+|+|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~---~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPD---ISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCc---HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 455678999999999887644 66677777764322 122 2234556777788899999999999999997
Q ss_pred -----cccccchhhHHHHHHHHHHHHHHHH----H--------HH---HHHHHHHHHhcCC-------------------
Q 020838 157 -----LPLLRWKRFAVAAAMCILAVRAVVV----Q--------LA---FYLHMQTHVYRRP------------------- 197 (320)
Q Consensus 157 -----iP~~RlKr~~~la~~~Il~v~a~iv----~--------Lg---~~~h~~~~vlg~~------------------- 197 (320)
+|+||++.+.++....++...+.++ + ++ .+.| +. .++.
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~l~~ 155 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLY--PL-MKRFFYWPQLFLGFTFNMGILMA 155 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--cc-cccCCcccHHHHHHHHHHHHHHH
Confidence 8999998887655443332221111 0 00 0111 11 1110
Q ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 020838 198 -----AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFA 272 (320)
Q Consensus 198 -----~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~ 272 (320)
...+...+++....++|+.+.++++|++|+|+|++.|++|+|+++|+|++.+++.......++..+ ++...+..
T Consensus 156 ~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (285)
T PRK12847 156 FAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLI-LGIISSLH 234 (285)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 123344455666677899999999999999999999999999999999999998877666665544 34443333
Q ss_pred hHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 273 WSKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 273 ~~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
+ .+.++.++.+..+++++..+|.+|.
T Consensus 235 ~---~~y~~~~~~~~~l~~~~~~~~~~~~ 260 (285)
T PRK12847 235 N---IFYLAILAAAGIFYYQYKLLDFDNP 260 (285)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3 3344666667789999999998763
No 15
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.90 E-value=6.5e-22 Score=186.33 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=130.6
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~ 160 (320)
+++++|++|||++.+..++++.|+++|.+. ..+ +..++.++++..++++.+|.+|||+|+|+|+ +|++
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~---~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG 77 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNF--KID---LKGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG 77 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccC--Ccc---hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence 567999999999999999999998887432 122 2223455677778899999999999999999 9999
Q ss_pred cchhhHHHHHHHHHHHHHHHH----H--------HH---HHHHHHHHHhcCCCC---------------------cchHH
Q 020838 161 RWKRFAVAAAMCILAVRAVVV----Q--------LA---FYLHMQTHVYRRPAV---------------------FSKPL 204 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~iv----~--------Lg---~~~h~~~~vlg~~~~---------------------~~~~v 204 (320)
|++++.++....++...+..+ + ++ .+.|.. ..+..+.. .....
T Consensus 78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~ 156 (279)
T PRK09573 78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI 156 (279)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 998887655543332221111 0 01 122221 11222211 11223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q 020838 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFT 284 (320)
Q Consensus 205 ~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~v 284 (320)
+++....++|+.+++++||+||+|+||+.|++|+|+++|+|++.+++.....++.....+.......+| .+..+-.+
T Consensus 157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~ 233 (279)
T PRK09573 157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI---YYLIVVII 233 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 345556678889999999999999999999999999999999999988777666665543332211233 44555445
Q ss_pred HHHHhhcc
Q 020838 285 LDHISCCP 292 (320)
Q Consensus 285 la~~L~~~ 292 (320)
+...+.|+
T Consensus 234 ~~~~~l~~ 241 (279)
T PRK09573 234 CDILFIIA 241 (279)
T ss_pred HhHHHHHH
Confidence 55555554
No 16
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.90 E-value=1.4e-22 Score=190.96 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=122.1
Q ss_pred HHhhhhhccchhHHhHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (320)
Q Consensus 89 ~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~ 160 (320)
++++|++||+|+.+..+++++|+++|...... ++ ....++.++++..+.++++|.+|||+|+|+|+ +|.+
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~--~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEH--WWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 36789999999999999999999876322111 22 22234446778888899999999999999999 8899
Q ss_pred cchhhHHHHHHHHHHHHHHHH----------HHHH---H-HHHHHH---Hhc-CCCC-----------------------
Q 020838 161 RWKRFAVAAAMCILAVRAVVV----------QLAF---Y-LHMQTH---VYR-RPAV----------------------- 199 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~iv----------~Lg~---~-~h~~~~---vlg-~~~~----------------------- 199 (320)
+++.+.+.....++.+.+.++ .++. + .+.++. -++ ++..
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~ 158 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP 158 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 998887555443332222111 0111 0 001110 011 1111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
.+...+++....++++.+++.+||++|+||||+.|++|+|+++|+|++.+++..++.++|+..+.....
T Consensus 159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~ 227 (283)
T TIGR01476 159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI 227 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223334455678888999999999999999999999999999999999999999988777654443
No 17
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.90 E-value=4.2e-22 Score=189.52 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=112.8
Q ss_pred HHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-HHHHHHHHhHhhhhhhhhccc------ccccc
Q 020838 89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAA-ALMMNIYIVGLNQLSDIEIDK------LPLLR 161 (320)
Q Consensus 89 ~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva-~l~~n~~i~giNd~fD~EIDk------iP~~R 161 (320)
|.+++.+||++|+.+++++..|+++| ++. .++ .++.+.++ ...-|.+.+++|||+|.|.|+ =|.++
T Consensus 2 ~~~~~~~rP~~wi~~a~pf~~g~~la-~~~--~~~----~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~ 74 (282)
T PRK13105 2 RQLLLSSRPISWINTAYPFAAAYLLA-GGE--IDW----LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA 74 (282)
T ss_pred hhHHHhcccHHHhccHHHHHHHHHHH-CCC--CCh----HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence 56789999999999999999999888 321 222 22223333 344566557899999999999 33444
Q ss_pred chhhHH----HHHH---HH-HHHHHHHH-H--------HHH---HHHHH----------------------HHHhcC---
Q 020838 162 WKRFAV----AAAM---CI-LAVRAVVV-Q--------LAF---YLHMQ----------------------THVYRR--- 196 (320)
Q Consensus 162 lKr~~~----la~~---~I-l~v~a~iv-~--------Lg~---~~h~~----------------------~~vlg~--- 196 (320)
++++.. +... ++ +....... + ++. +.|.. ..++|.
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~ 154 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA 154 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 555432 1111 11 10110000 0 010 11110 001110
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838 197 PAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (320)
Q Consensus 197 ~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~ 267 (320)
+...+...+++...+.+|+.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++++..+..|.
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~ 225 (282)
T PRK13105 155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW 225 (282)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11234445667777888999999999999999999999999999999999999999999999999886653
No 18
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=1.5e-21 Score=185.99 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=146.2
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
+.++++.|+|++||+..+....+++.|+++|..+.++ +..++..+++..++.++++++|||+|+|||+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~-----~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG-----ASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 3456779999999999999999889998887433222 1223445677778888899999999999999
Q ss_pred --cccccchhhHHHHHHHHHHHHHH----HHH-----HH---H-HHHHHHHHhcCC-----------------------C
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAV----VVQ-----LA---F-YLHMQTHVYRRP-----------------------A 198 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~----iv~-----Lg---~-~~h~~~~vlg~~-----------------------~ 198 (320)
+|+||++.+.++.+......... .++ ++ . ....++..+... .
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g 158 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRG 158 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 99999988875544321111110 000 00 0 001111111110 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q 020838 199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT 278 (320)
Q Consensus 199 ~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~ 278 (320)
..+.+.+++...+++|+.+.++++++||.|+||+.|++|+|+++|++++.+++.....+++...++.+.....++ ++
T Consensus 159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y 235 (291)
T PRK12886 159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WF 235 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HH
Confidence 123344455555678899999999999999999999999999999999999988888888888777777655555 55
Q ss_pred HHHHHHHHHHhhccccccCCCC
Q 020838 279 VYFSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 279 ~~~h~vla~~L~~~~~~Vd~~~ 300 (320)
.++-++.+..+.++++.++.+|
T Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~ 257 (291)
T PRK12886 236 LAGLAVTGILLLYEHWLLRGGD 257 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 6666667777778888887776
No 19
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=1.1e-21 Score=184.28 Aligned_cols=170 Identities=21% Similarity=0.280 Sum_probs=117.3
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~ 160 (320)
+++++|++||++...+.++.+.|+++|.+.. ++ ....+.++++..++++..+.+|||+|+|+|+ +|++
T Consensus 4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~---~~--~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G 78 (276)
T PRK12882 4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGIL---SS--PSLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78 (276)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---ch--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence 5788999999999999999999998874321 11 1113445777788899999999999999998 8999
Q ss_pred cchhhHHHHHHHHHHHHHHHH----H--------H---HHHHHHHHHHhcC-CCCcc-----------------------
Q 020838 161 RWKRFAVAAAMCILAVRAVVV----Q--------L---AFYLHMQTHVYRR-PAVFS----------------------- 201 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~iv----~--------L---g~~~h~~~~vlg~-~~~~~----------------------- 201 (320)
+++++.++....++.+.+.++ + . ..+.| +..+++ |...+
T Consensus 79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Y--t~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~ 156 (276)
T PRK12882 79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLY--AETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGL 156 (276)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcccchhHHHHHHHHHHHHHHHHHHhcccch
Confidence 998887655443222221111 0 0 11222 212222 22111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838 202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il 264 (320)
...+.+....++++.+++++||+||+||||+.|++|+|+++|+|++.+++...+.++.+...+
T Consensus 157 ~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~ 219 (276)
T PRK12882 157 LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344456778999999999999999999999999999999999988777666655443
No 20
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.89 E-value=1.1e-21 Score=190.28 Aligned_cols=208 Identities=14% Similarity=0.243 Sum_probs=131.4
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~-~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------ 156 (320)
.++.+++++|+.||+|++... ..+.+..+|.+.. +++....+ .+...++...++.++++.+|||+|+|+|+
T Consensus 8 ~~~~~k~~l~L~kP~t~l~~~-p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWISVF-PCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHHHHH-HHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 345678999999999999544 4444444564321 12221111 11112233334455678999999999999
Q ss_pred -cccccchhhHHHHHHHHHHHHHH----HH-------------H------HHHHHHHH-HHHhcC-CC------------
Q 020838 157 -LPLLRWKRFAVAAAMCILAVRAV----VV-------------Q------LAFYLHMQ-THVYRR-PA------------ 198 (320)
Q Consensus 157 -iP~~RlKr~~~la~~~Il~v~a~----iv-------------~------Lg~~~h~~-~~vlg~-~~------------ 198 (320)
+|+++++++.++....++.+.++ .+ . +..+.|.. .+-+++ +.
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~ 165 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF 165 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence 89999988865554322221111 00 0 01112210 000111 11
Q ss_pred -----------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838 199 -----------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (320)
Q Consensus 199 -----------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~ 267 (320)
..+..++++.+..++++.+++++||+||+||||+.|+||+|+++|+|++.+++...+.++.+..+..+.
T Consensus 166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~ 245 (331)
T PRK12392 166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW 245 (331)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 123344556667778999999999999999999999999999999999999999888888888888888
Q ss_pred hCcchhHHHHHHHHHHHHHHHhhcccccc
Q 020838 268 TSPFAWSKLITVYFSFTLDHISCCPLNFI 296 (320)
Q Consensus 268 ~~~~~~~~~~~~~~h~vla~~L~~~~~~V 296 (320)
.+..++ .....-++++..+++|.+..
T Consensus 246 ~~~~~~---~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 246 SWGFTV---LMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence 777665 44444555555666665543
No 21
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.89 E-value=6.3e-21 Score=183.60 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=148.1
Q ss_pred hHHHHHHHhhhhh---ccchhHHhHHHHHHHHHHhhcccC---CCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc
Q 020838 83 SVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK 156 (320)
Q Consensus 83 ~~~~~l~a~~kfs---RPhTiigt~l~~l~g~llA~~~~~---~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk 156 (320)
.+.+.++.|+|++ ||++.....++++.|+++|.+... ..+ +..++..+++++++++.+|.+|||+|+|+|+
T Consensus 25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLL---LWHLFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556778899999 999999999999999998844211 222 2234556778888999999999999999997
Q ss_pred ---------cccccchhhHHHHHHHHHHHHHHHH----H-----H------HHHHHH--HH------HHhcCCC------
Q 020838 157 ---------LPLLRWKRFAVAAAMCILAVRAVVV----Q-----L------AFYLHM--QT------HVYRRPA------ 198 (320)
Q Consensus 157 ---------iP~~RlKr~~~la~~~Il~v~a~iv----~-----L------g~~~h~--~~------~vlg~~~------ 198 (320)
+|.+|++.+.++....++.+.+..+ + + ..+.|. .. .+.|.+.
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~ 181 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALM 181 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999887655543332222111 0 0 111221 00 0011000
Q ss_pred -------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 020838 199 -------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPF 271 (320)
Q Consensus 199 -------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~ 271 (320)
..+...+.+....++|+.+.+.+++++|+|+||+.|++|+|+++|++++.++..... +..+...+++.....
T Consensus 182 g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 260 (314)
T PRK12878 182 GWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGV 260 (314)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 122233445555778999999999999999999999999999999999998885444 444444445544444
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccCCCCc--h--HHHHHHHHHH
Q 020838 272 AWSKLITVYFSFTLDHISCCPLNFIPLNDS--F--FCLYNLRAVY 312 (320)
Q Consensus 272 ~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~--~--~~~w~lf~~~ 312 (320)
+| .+.++-.++...+.+|+..+|++|+ . +|..|.+|.-
T Consensus 261 ~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n~~~~~ 302 (314)
T PRK12878 261 PL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDAGL 302 (314)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHhHHHHH
Confidence 44 4445555566678899999886653 2 3555665553
No 22
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.88 E-value=2.6e-21 Score=190.57 Aligned_cols=178 Identities=16% Similarity=0.254 Sum_probs=119.4
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHH-HHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF-FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~-~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------ 156 (320)
-++.++.+++.+||+|++...+++++|+... + ..++.+.. ...++.++++..++.+++|.+|||+|+|+|+
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g-~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R 158 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G-NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR 158 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence 4566778999999999999999999998742 2 11222111 1223556677777889999999999999999
Q ss_pred -cccccchhhHHHHHHHHHHH----HHHHH------------HHH------HHHHHH-HHHhcC-C--------------
Q 020838 157 -LPLLRWKRFAVAAAMCILAV----RAVVV------------QLA------FYLHMQ-THVYRR-P-------------- 197 (320)
Q Consensus 157 -iP~~RlKr~~~la~~~Il~v----~a~iv------------~Lg------~~~h~~-~~vlg~-~-------------- 197 (320)
+|+++++++.++....++.. .++.+ .++ .+.|.. ...+++ +
T Consensus 159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~l 238 (375)
T PLN00012 159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISL 238 (375)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHH
Confidence 89999988865442211111 01110 011 112210 000111 1
Q ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838 198 ---------AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 198 ---------~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i 263 (320)
..++...+++..++++++.+++++||++|+||||+.|++|+|+++|+|++.+++..++.+.++..+
T Consensus 239 p~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 239 PWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 112334445566677899999999999999999999999999999999999999877777765443
No 23
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.88 E-value=4.8e-21 Score=181.19 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=135.6
Q ss_pred HHHHhhhhhccchhHHhHH---HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 87 ALDAFYRFSRPHTVIGTAL---SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l---~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
.+++|+|++|||+..+..+ +++.|.++|.+... + +..++.++++..++.+++|.+|||+|+|+|+
T Consensus 4 ~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~---~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~ 78 (282)
T PRK12848 4 RLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--D---LWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKN 78 (282)
T ss_pred hHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCC
Confidence 4678899998776665554 45666666633222 2 1123345566677888899999999999997
Q ss_pred --cccccchhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcCC----------------------
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP---------------------- 197 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~iv---------------~Lg~~~h~~~~vlg~~---------------------- 197 (320)
+|+||++.+.++....++...+.++ .+..+.| +..++..
T Consensus 79 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~ 156 (282)
T PRK12848 79 RPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAAV 156 (282)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999887655543332221111 0011222 1111110
Q ss_pred -CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838 198 -AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276 (320)
Q Consensus 198 -~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~ 276 (320)
...+...+++....++|+.+.+..++++|+|+||+.|++|+|+++|.|++.+++ .++.+......+++.....++
T Consensus 157 ~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 232 (282)
T PRK12848 157 QGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGW--- 232 (282)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcH---
Confidence 012333445555567888999999999999999999999999999999998877 455555555555666554444
Q ss_pred HHHHHHHHHHHHhhccccccCCCCc
Q 020838 277 ITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 277 ~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.+.++-.+.+..+.++++.+|.+|+
T Consensus 233 ~y~~~~~~~~~~~~~~~~~~~~~~~ 257 (282)
T PRK12848 233 AYYWGLLVAAALFVYQQKLIRDRER 257 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 5556666778888999999988764
No 24
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.88 E-value=2.6e-21 Score=185.86 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=119.8
Q ss_pred HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHH-HHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------c
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFF-TGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------L 157 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~-~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------i 157 (320)
++++++++++||+|+..+.++++.|++.+. . .++..... ..++.++++..++++++|.+|||+|+|+|+ +
T Consensus 25 ~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl 102 (314)
T PRK07566 25 SIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPI 102 (314)
T ss_pred hHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCC
Confidence 456789999999999999999888876542 1 12322111 122345566677888899999999999999 8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHH---------HHHH----HHHHHH---HHhcC-CC----------------------
Q 020838 158 PLLRWKRFAVAAAMCILAVRAVVV---------QLAF----YLHMQT---HVYRR-PA---------------------- 198 (320)
Q Consensus 158 P~~RlKr~~~la~~~Il~v~a~iv---------~Lg~----~~h~~~---~vlg~-~~---------------------- 198 (320)
|+++++++.++....++.+.+.++ .+++ ..+.++ ..+++ +.
T Consensus 103 ~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~ 182 (314)
T PRK07566 103 PSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF 182 (314)
T ss_pred CCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 999998887655543332222111 0111 011111 01111 10
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838 199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il 264 (320)
..+...+++.....+++.+++++||++|+|+||+.|+||+|+++|+|++.+++..++.++|+..+.
T Consensus 183 ~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~ 251 (314)
T PRK07566 183 GAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA 251 (314)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444555567788899999999999999999999999999999999999888888887643
No 25
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.88 E-value=8.3e-21 Score=181.82 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=122.1
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChH-HHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------ 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~-~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------ 156 (320)
.++.++.++|++||+|+....++++.|+..+ + ..++... ....++.+++++.++++..|.+|||+|+|+|+
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~-~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~R 89 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G-NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYR 89 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC
Confidence 4456778999999999999999999998753 1 1122211 11123445677788899999999999999999
Q ss_pred -cccccchhhHHHHHHHHHHHHH----H------------HHHHHH------HHHHH-HHHhcC-C--------------
Q 020838 157 -LPLLRWKRFAVAAAMCILAVRA----V------------VVQLAF------YLHMQ-THVYRR-P-------------- 197 (320)
Q Consensus 157 -iP~~RlKr~~~la~~~Il~v~a----~------------iv~Lg~------~~h~~-~~vlg~-~-------------- 197 (320)
+|.+|++.+.++....++...+ + ...+++ +.|.. ..-+++ +
T Consensus 90 pi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~ 169 (306)
T TIGR02056 90 PIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIAL 169 (306)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHH
Confidence 8899998886554332221111 0 011111 12210 001111 1
Q ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 020838 198 ---------AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV 265 (320)
Q Consensus 198 ---------~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~ 265 (320)
..++...+++...+++++.++++.||++|+|+||+.|+||+|+++|+|++.+++..++..+|+..+..
T Consensus 170 ~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~ 246 (306)
T TIGR02056 170 PWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY 246 (306)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 11223344555666789999999999999999999999999999999999999998888877766543
No 26
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=1.5e-20 Score=179.91 Aligned_cols=214 Identities=14% Similarity=0.088 Sum_probs=147.8
Q ss_pred HHHHhhhhhccchhHHhHHHHHH---HHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 87 ALDAFYRFSRPHTVIGTALSIVS---VALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l~~l~---g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
.++.|+|++||+...++.+-.+. |.+++... ..+ +..++..++...++.++++++||+.|+|||+
T Consensus 6 ~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~---~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 80 (294)
T PRK12873 6 KLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPS---LLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKN 80 (294)
T ss_pred hHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCC
Confidence 46688999999988877665433 44443221 112 2223455667777888999999999999998
Q ss_pred --cccccchhhHHHHHHHHHHHHHHHH--H-------HHH----------HHH--HH------HHHhcCCC---------
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAVVV--Q-------LAF----------YLH--MQ------THVYRRPA--------- 198 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~iv--~-------Lg~----------~~h--~~------~~vlg~~~--------- 198 (320)
+|+||+++..++.+..++.+.++.+ . +++ +.| +. +.+.|.+.
T Consensus 81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~ 160 (294)
T PRK12873 81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWA 160 (294)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHH
Confidence 9999999887666553332222111 0 111 111 11 01111110
Q ss_pred ----Ccch--HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcch
Q 020838 199 ----VFSK--PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFA 272 (320)
Q Consensus 199 ----~~~~--~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~ 272 (320)
..+. ..+++.+.+++|+.+.++++++||.|+|++.|++|+|+++|+ ++..++..++.++.+....+|...+.+
T Consensus 161 Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~ 239 (294)
T PRK12873 161 AAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVG 239 (294)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1121 233444677899999999999999999999999999999996 677778889999988888899887776
Q ss_pred hHHHHHHHHHHHHHHHhhccccccCCCCch-HHHHHHH
Q 020838 273 WSKLITVYFSFTLDHISCCPLNFIPLNDSF-FCLYNLR 309 (320)
Q Consensus 273 ~~~~~~~~~h~vla~~L~~~~~~Vd~~~~~-~~~w~lf 309 (320)
+ ++.++.++.+..+.|||+.+|++|.. -.-|+.|
T Consensus 240 ~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F 274 (294)
T PRK12873 240 F---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHF 274 (294)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 6 77788888899999999999998853 3445554
No 27
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.87 E-value=3.5e-20 Score=175.37 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=135.8
Q ss_pred HhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccc
Q 020838 90 AFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLL 160 (320)
Q Consensus 90 a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~ 160 (320)
.+.|+.||.......++.+.|+.+|... .+.++ +..++..+++..++++.+|.+|||+|+|+|+ +|+|
T Consensus 6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~--~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG 82 (281)
T TIGR01474 6 KLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPP--LYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG 82 (281)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCc--HHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence 4566666666666677777777776331 12211 1223445666677888899999999999997 8999
Q ss_pred cchhhHHHHHHHHHHHHHHHH----H--------HHH-HHHHHHHHhcC----C--------------------CCcchH
Q 020838 161 RWKRFAVAAAMCILAVRAVVV----Q--------LAF-YLHMQTHVYRR----P--------------------AVFSKP 203 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~iv----~--------Lg~-~~h~~~~vlg~----~--------------------~~~~~~ 203 (320)
|++.+.++....++...+..+ + .+. ....++. .++ + ...+..
T Consensus 83 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~ 161 (281)
T TIGR01474 83 AVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF-MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTA 161 (281)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch-hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 998887655443332221111 0 000 0111111 111 0 012334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHH
Q 020838 204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSF 283 (320)
Q Consensus 204 v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~ 283 (320)
.+++....++|+.+.++++++||+|+||+.|++|+|+++|+|++.+ ...++.++.....+.+.....++ .+.++-.
T Consensus 162 ~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~ 237 (281)
T TIGR01474 162 AWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGLGP---VYYLGLA 237 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHH
Confidence 4445566778999999999999999999999999999999988644 44455555455555565555454 5556777
Q ss_pred HHHHHhhccccccCCCCc--h--HHHHHHHHHH
Q 020838 284 TLDHISCCPLNFIPLNDS--F--FCLYNLRAVY 312 (320)
Q Consensus 284 vla~~L~~~~~~Vd~~~~--~--~~~w~lf~~~ 312 (320)
+.+..+.+++..+|.+|+ + +|-++.+|.-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~ 270 (281)
T TIGR01474 238 AAALLLIRQIATLDIRDPENCLKLFKANNYVGL 270 (281)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHHH
Confidence 778888899888877643 2 2444555543
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.86 E-value=3e-20 Score=174.75 Aligned_cols=163 Identities=22% Similarity=0.299 Sum_probs=105.8
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------cccc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL 160 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------iP~~ 160 (320)
+++++|++|||++....++.+.|++++.+..++ +..++..+++..+++++++.+|||+|+|+|+ +|++
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-----~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPP-----IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 467899999999999999999998887443221 1122334556666777889999999999998 8999
Q ss_pred cchhhHHHHHHHHHHHHHHHH----HH-----HH----HHHHHHHHhcC-CCCcch---------HH------------H
Q 020838 161 RWKRFAVAAAMCILAVRAVVV----QL-----AF----YLHMQTHVYRR-PAVFSK---------PL------------I 205 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~iv----~L-----g~----~~h~~~~vlg~-~~~~~~---------~v------------~ 205 (320)
|++++.++....++...+..+ +. ++ ....++..+++ +..++. ++ .
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~ 157 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAG 157 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHH
Confidence 998887655443322222111 10 00 01111111111 111111 00 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHH
Q 020838 206 FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLL 255 (320)
Q Consensus 206 ~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll 255 (320)
++..+.+++..++++.||++|+||||+.|++|+|+++|+|++.+++....
T Consensus 158 ~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 158 YLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 12223455667899999999999999999999999999999999776554
No 29
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.86 E-value=3.6e-20 Score=175.15 Aligned_cols=178 Identities=20% Similarity=0.210 Sum_probs=127.3
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhh--hccc---------
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK--------- 156 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~--EIDk--------- 156 (320)
+++++|.+||+|+..+.++++.|..+|... ..++ +...+..++++++++.++|.+|||+|+ ++|+
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFH---PLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 467899999999999999999999887432 2344 223445677888899999999999999 5885
Q ss_pred cccccchhhHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHH---HhcC--------------------
Q 020838 157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTH---VYRR-------------------- 196 (320)
Q Consensus 157 iP~~RlKr~~~la~~~Il~v~----a~iv---------~Lg~~----~h~~~~---vlg~-------------------- 196 (320)
+|+++++++.++....++... +..+ .++.. .+.++. -++.
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~ 158 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT 158 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence 889999888755433222211 1111 11110 011110 0000
Q ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhC
Q 020838 197 ----PAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269 (320)
Q Consensus 197 ----~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~ 269 (320)
....+..++++.....+++.++.+.||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0113344555666677899999999999999999999999999999999999999999999999888776654
No 30
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=1.6e-20 Score=178.62 Aligned_cols=179 Identities=26% Similarity=0.327 Sum_probs=110.5
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcccc-ccc-
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-PLL- 160 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~-~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDki-P~~- 160 (320)
..+.++.+++.+||+|+..+..+++.|+.+|.+...+ +++..+. ++. ...+..|.+++++|||+|+|+|+. |+-
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~-ll~--~~~i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVA-LFA--YFLFPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHH-HHH--HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence 3456778899999999999999999999998654322 3432221 121 112557888999999999999992 221
Q ss_pred --cc-----hhhHHHHHH--HHHHHH--------HHHHHHHH--HHHHHH---HHhc-CC--------------------
Q 020838 161 --RW-----KRFAVAAAM--CILAVR--------AVVVQLAF--YLHMQT---HVYR-RP-------------------- 197 (320)
Q Consensus 161 --Rl-----Kr~~~la~~--~Il~v~--------a~iv~Lg~--~~h~~~---~vlg-~~-------------------- 197 (320)
|. |+....+.. +.+.+. +..+.++. ....++ .-++ .|
T Consensus 81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~ 160 (282)
T PRK12875 81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL 160 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence 11 111100110 000000 00010111 000000 0000 01
Q ss_pred --CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838 198 --AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (320)
Q Consensus 198 --~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~ 267 (320)
...+... +.....+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++-+..+.+|.
T Consensus 161 ~tg~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~ 230 (282)
T PRK12875 161 VSGSLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL 230 (282)
T ss_pred HcCCCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222 2222358999999999999999999999999999999999999999999888888877663
No 31
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.85 E-value=3e-20 Score=174.44 Aligned_cols=205 Identities=17% Similarity=0.157 Sum_probs=121.9
Q ss_pred HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcccc-------c
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P 158 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDki-------P 158 (320)
+.+++++|+.|+.|.+.+..+...+..... ..+..+ ....+++..+.....+.+|||+|+|+|+. |
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 456789999999999988777665542210 111111 12335555666777788999999999992 2
Q ss_pred cccchhhHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHhcCCC---------------------
Q 020838 159 LLRWKRFAVAAAMCILAVRAVVV----------------QLAFYLHMQT---HVYRRPA--------------------- 198 (320)
Q Consensus 159 ~~RlKr~~~la~~~Il~v~a~iv----------------~Lg~~~h~~~---~vlg~~~--------------------- 198 (320)
+.|..+...+...++....+..+ .+..++|... ..+..|.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~ 154 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence 22222222211111111111000 0001122110 1111111
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHH
Q 020838 199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSK 275 (320)
Q Consensus 199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~ 275 (320)
.++...+....+++++.++++++||++|+||||+.|++|+|+++|+|++.+++..+..+.++..+.........+
T Consensus 155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (285)
T PRK12872 155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL-- 232 (285)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH--
Confidence 112333445556667788999999999999999999999999999999999999999999998886655433233
Q ss_pred HHHHHHHHHHHHHhhccccccCCCC
Q 020838 276 LITVYFSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 276 ~~~~~~h~vla~~L~~~~~~Vd~~~ 300 (320)
.....-.+.+..+.+.++..+.+|
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~ 256 (285)
T PRK12872 233 -LLLVLLLLLAYVLYYIIKLFAADD 256 (285)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccc
Confidence 233333344556666666554444
No 32
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.84 E-value=1.7e-19 Score=171.84 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=135.9
Q ss_pred HHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc--------
Q 020838 85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------- 156 (320)
Q Consensus 85 ~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk-------- 156 (320)
+..+++++|++||++++...++++.|+++|.+. ..++ ..++.++++..++.+++|.+|||+|+|+|+
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~---~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R 81 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPL---LLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR 81 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence 345889999999999999999999999887432 2232 223445677788899999999999999999
Q ss_pred -cccccchhhHHHHHHHHHHHHH------------HHH-HHHH--HHHHHHHHhcC-CC---------------------
Q 020838 157 -LPLLRWKRFAVAAAMCILAVRA------------VVV-QLAF--YLHMQTHVYRR-PA--------------------- 198 (320)
Q Consensus 157 -iP~~RlKr~~~la~~~Il~v~a------------~iv-~Lg~--~~h~~~~vlg~-~~--------------------- 198 (320)
+|+||++++.++....++...+ ..+ .++. +...++..+++ +.
T Consensus 82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 161 (296)
T PRK04375 82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV 161 (296)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence 8999999887554432221111 111 1111 11122211221 10
Q ss_pred --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHH
Q 020838 199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276 (320)
Q Consensus 199 --~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~ 276 (320)
..+...+++...+++|..+.+..+.++|.|-||+.|++|+|+++|.+++.+++...+.+.....++.......++
T Consensus 162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (296)
T PRK04375 162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL--- 238 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH---
Confidence 123334456666777888888777788888899999999999999999998777666655554444444332333
Q ss_pred HHHH-HHHHHHHHhhccccccCCCC
Q 020838 277 ITVY-FSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 277 ~~~~-~h~vla~~L~~~~~~Vd~~~ 300 (320)
.+.+ +-.+-+.++.++++.++.+|
T Consensus 239 ~y~~~~~~~~~~~l~~~~~~~~~~~ 263 (296)
T PRK04375 239 LYLVVALLLGAWFLYYAWRLYRKDD 263 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 3333 33344566667788887665
No 33
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.84 E-value=2.7e-19 Score=168.72 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=135.4
Q ss_pred HhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccc
Q 020838 90 AFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLL 160 (320)
Q Consensus 90 a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~ 160 (320)
+++|++||+++....++++.|+++|.+.. +.+ +..++..+++.+++++++|.+|||+|+|+|+ +|+|
T Consensus 2 ~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~---~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG 77 (280)
T TIGR01473 2 DYLQLTKPRIISLLLITAFAGMWLAPGGA-LVN---PPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTG 77 (280)
T ss_pred chHHHccHHHHHHHHHHHHHHHHHhCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCC
Confidence 68999999999999999999998874321 123 2223445777788899999999999999999 8999
Q ss_pred cchhhHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHHHhcC-CC-----------------------Ccc
Q 020838 161 RWKRFAVAAAMCILAVRAVV-------------VQLAF--YLHMQTHVYRR-PA-----------------------VFS 201 (320)
Q Consensus 161 RlKr~~~la~~~Il~v~a~i-------------v~Lg~--~~h~~~~vlg~-~~-----------------------~~~ 201 (320)
|++.+.++....++...+.+ ..++. +.+.++...++ +. ..+
T Consensus 78 ~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~ 157 (280)
T TIGR01473 78 RISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS 157 (280)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99888755543222221111 01111 12222211221 10 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH-H
Q 020838 202 KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV-Y 280 (320)
Q Consensus 202 ~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~-~ 280 (320)
...+++...+++|.....-..+.+|.|.||+.|++|+|+++|.|++.+++...+.+......+.+.....++ .+. .
T Consensus 158 ~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~ 234 (280)
T TIGR01473 158 LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW---LYLIV 234 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHH
Confidence 333344455556666665566789999999999999999999999998887776666666555555544444 343 4
Q ss_pred HHHHHHHHhhccccccCCC
Q 020838 281 FSFTLDHISCCPLNFIPLN 299 (320)
Q Consensus 281 ~h~vla~~L~~~~~~Vd~~ 299 (320)
+-.+.+.++.++++.+|.+
T Consensus 235 ~~~~~~~~l~~~~~~~~~~ 253 (280)
T TIGR01473 235 ATLLGALFLYLAFKFYRDP 253 (280)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 5555677788888888776
No 34
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.83 E-value=2.9e-19 Score=168.92 Aligned_cols=215 Identities=12% Similarity=0.092 Sum_probs=133.4
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cc
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP 158 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP 158 (320)
+++++|++||++.....++++.|+++|.+. ..++ ..++.+.++..++++++|.+|||+|+|+|+ +|
T Consensus 2 ~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~---~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~ 76 (279)
T PRK12869 2 IKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSW---LPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP 76 (279)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCH---HHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence 568899999999999999999999887432 2231 123445667777888999999999999999 89
Q ss_pred cccchhhHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHhcCCC------------------------C
Q 020838 159 LLRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPA------------------------V 199 (320)
Q Consensus 159 ~~RlKr~~~la~~~Il~v~a-------------~iv~Lg~--~~h~~~~vlg~~~------------------------~ 199 (320)
++|++.+.++.....+...+ ..+.++. +.+.++..+++-. .
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~ 156 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGS 156 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998887655432221111 1111111 2222222122211 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q 020838 200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITV 279 (320)
Q Consensus 200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~ 279 (320)
.+...+++...+++|..+..-..+.+|.|.|++.|++|+|+++|+|++.++...+..+..+...+.+. ...++ ++.
T Consensus 157 ~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~ 232 (279)
T PRK12869 157 LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGL 232 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHH
Confidence 22333444555566777776556778999999999999999999999998887776665555555454 33344 455
Q ss_pred HHHHHHHHH-hhccccccCCC-Cc-h--HHHHHHHHH
Q 020838 280 YFSFTLDHI-SCCPLNFIPLN-DS-F--FCLYNLRAV 311 (320)
Q Consensus 280 ~~h~vla~~-L~~~~~~Vd~~-~~-~--~~~w~lf~~ 311 (320)
.+-.+.... +.++.+.++.+ ++ . +|.++..|.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l 269 (279)
T PRK12869 233 ILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYL 269 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 444444343 33433444333 32 3 244444444
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=7e-19 Score=168.38 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=126.7
Q ss_pred HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc----------
Q 020838 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------- 156 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------- 156 (320)
.++.++|++|||+.+..+..++.|..+|......+++. ..++..+++.+.+ ..++.+|||+|+|+|+
T Consensus 4 ~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~--~~~l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm~r~ 80 (297)
T PRK12871 4 TLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE--LTIKAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTLTRY 80 (297)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhhhcc
Confidence 46789999999999998888888887773211123321 1222233333443 3357999999999984
Q ss_pred --------cccccchhhHHHHHHHHHHHHHH-------------HHHHHHHHHH----HHHHhcC----CC---------
Q 020838 157 --------LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAFYLHM----QTHVYRR----PA--------- 198 (320)
Q Consensus 157 --------iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~~~h~----~~~vlg~----~~--------- 198 (320)
+|+++++.+.++....++...+. .+.++++.+. ++. .++ |.
T Consensus 81 ~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~kr~~~~p~~~l~G~~~~ 159 (297)
T PRK12871 81 WRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-KKRNQKYPVAQLLGRTDF 159 (297)
T ss_pred ccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHH
Confidence 47788877765554422222111 1122223221 110 121 20
Q ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHH
Q 020838 199 ------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVG 266 (320)
Q Consensus 199 ------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g 266 (320)
..+...+.+..+.++|+.+++++||++|+|+|++.|++|+|+++|++++.++...+..+..+..+ +
T Consensus 160 ~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~ 237 (297)
T PRK12871 160 TLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--F 237 (297)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--H
Confidence 01122234455667889999999999999999999999999999999998766555555544333 3
Q ss_pred hhCcchhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 267 ATSPFAWSKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 267 ~~~~~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.....++ ......-++.+..+.+|.+..+.+|+
T Consensus 238 ~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (297)
T PRK12871 238 FLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQ 270 (297)
T ss_pred HHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3323232 22333435566677788787777765
No 36
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=5.7e-19 Score=168.38 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=132.7
Q ss_pred HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh--hhccc--------
Q 020838 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD--IEIDK-------- 156 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD--~EIDk-------- 156 (320)
+++.+++.+||+|..++..+++.|..+|.....+++ +...+.+++++++++...|.+|||+| +++|+
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~---~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFD---PLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcC---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 456788999999999999999999988854334555 33345567888889999999999999 55554
Q ss_pred --cccccchhhHHHHHHHHHHHHHH-------------HHHHHH------HHHHH-HHHhc-CCC---------------
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAF------YLHMQ-THVYR-RPA--------------- 198 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~------~~h~~-~~vlg-~~~--------------- 198 (320)
+|.++++++.+.....++...+. .+.++. +.|.. ..-++ ++.
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vl 159 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVM 159 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHH
Confidence 56677766654443322111110 011111 11110 00011 110
Q ss_pred --------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 020838 199 --------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270 (320)
Q Consensus 199 --------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~ 270 (320)
..+...+....-..+++..+...++++|+|+||+.|+||+|+++|+|++ ++-..+...+|+..+.......
T Consensus 160 g~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~ 238 (296)
T PRK05951 160 GLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAIL 238 (296)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 0111122222233455677889999999999999999999999999999 5555566777776665544432
Q ss_pred chhHHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 271 FAWSKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 271 ~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
..+...+..++.......+.++++.+|.++.
T Consensus 239 ~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~ 269 (296)
T PRK05951 239 TPLISLWALLSLLVAYALCLWQLRKFPPDPD 269 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 2333346666777666677777777765553
No 37
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.79 E-value=1.6e-17 Score=159.65 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=114.4
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
.+..+++++|++||+++....++++.|+++|... +.++. .++.++++..++.+.++.+|||+|+|+|+
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 3456788999999999999999999999887322 23321 12334455566677889999999999998
Q ss_pred --cccccchhhHHHHHHHHHHHHHH-------------HHHHHH--HHHHHHHHhcC-CC--------------------
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAV-------------VVQLAF--YLHMQTHVYRR-PA-------------------- 198 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~-------------iv~Lg~--~~h~~~~vlg~-~~-------------------- 198 (320)
+|+||+++..++....++...++ +..++. +...++..+++ +.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a 163 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA 163 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence 99999998876554432211111 111222 22223321222 11
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHH
Q 020838 199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCIS 253 (320)
Q Consensus 199 ---~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ 253 (320)
..+...+++.+++++|+.+.+..++++|.|.|++.|++|+|+++|+|++.+.+..
T Consensus 164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~ 221 (306)
T PRK13362 164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL 221 (306)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHH
Confidence 1334455667778889999999999999999999999999999999999875543
No 38
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.77 E-value=2.3e-17 Score=159.20 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=114.9
Q ss_pred HHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----------
Q 020838 88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----------- 156 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk----------- 156 (320)
++.++|.+||+|...+..+++.|..+|......+++ ...+.+++++++.....|.+|||+|.+.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~---~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDW---LLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 356899999999999999999999888543334552 233556777788899999999999988644
Q ss_pred cccccchhhHHHHHHHHHHHHHHH-------------HHHHH------HHHHH-HHHhcC-CC-----------------
Q 020838 157 LPLLRWKRFAVAAAMCILAVRAVV-------------VQLAF------YLHMQ-THVYRR-PA----------------- 198 (320)
Q Consensus 157 iP~~RlKr~~~la~~~Il~v~a~i-------------v~Lg~------~~h~~-~~vlg~-~~----------------- 198 (320)
++.+.++++.+.....++...+.+ +.+|. +.|.. ..-++. |.
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~ 159 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA 159 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 556666665543332221111111 11121 11110 000000 00
Q ss_pred ------CcchHHH--------------------HHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHH
Q 020838 199 ------VFSKPLI--------------------FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252 (320)
Q Consensus 199 ------~~~~~v~--------------------~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~ 252 (320)
.++...+ +...-+.+.+..+...|+++|+|+||+.|.||+|+++|+|++.++-.
T Consensus 160 ~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~ 239 (317)
T PRK13387 160 VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFA 239 (317)
T ss_pred HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHH
Confidence 0111111 12333334566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 020838 253 SLLEVAYTVAILVGA 267 (320)
Q Consensus 253 ~ll~~~y~~~il~g~ 267 (320)
.+..++|+..+....
T Consensus 240 ~l~~~a~l~~~~~v~ 254 (317)
T PRK13387 240 ILFYASYLAIAVIVL 254 (317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998765544
No 39
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.76 E-value=5.4e-17 Score=156.01 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=118.6
Q ss_pred HHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccccc---cc
Q 020838 86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---LL 160 (320)
Q Consensus 86 ~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDkiP---~~ 160 (320)
++++.+++-+||+|...+..+++.|..+|.....++++ ...+..++++++.++..|.+|||+|.+ +|+-+ +.
T Consensus 10 ~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~---~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 86 (304)
T PRK07419 10 SRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRL---DQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVV 86 (304)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcc
Confidence 45667889999999999999999999888554345663 333556788889999999999999998 78621 11
Q ss_pred c--chhhHHHHH--HHHHH--H--------HHH-HHHHHHHHHHHHHHh-cCC---------------------------
Q 020838 161 R--WKRFAVAAA--MCILA--V--------RAV-VVQLAFYLHMQTHVY-RRP--------------------------- 197 (320)
Q Consensus 161 R--lKr~~~la~--~~Il~--v--------~a~-iv~Lg~~~h~~~~vl-g~~--------------------------- 197 (320)
| .+++.+... .+.+. + ++. ++.+|.....--..+ +.|
T Consensus 87 ~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~y 166 (304)
T PRK07419 87 NLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALY 166 (304)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 1 122221111 11110 0 011 111222111000001 111
Q ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 198 ---AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 198 ---~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
..++..++.....+.+.+..+...++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+.....
T Consensus 167 v~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 167 SQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444445555567788889999999999999999999999999999999999999999988765554
No 40
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.76 E-value=5.7e-17 Score=155.30 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=108.4
Q ss_pred hhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---
Q 020838 81 LNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--- 156 (320)
Q Consensus 81 ~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~-~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk--- 156 (320)
.++++-|.++-+-+ +||-.++..+..-.-...++... .++.+ ....+.+++...+..+..+.+|||+|+||||
T Consensus 2 ~k~~~iy~~e~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~ 78 (299)
T PRK13592 2 IKRLNVYLKEMYPL-LPRLILSLTLFFEIYMITLLSNHISSFRI--GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF 78 (299)
T ss_pred chhHHHHHHHhccc-hhhhHHHHHHHHHHHHHhhhccCCCCCCC--chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC
Confidence 45566666666655 36777766666544444443322 34432 1122222233333444556799999999999
Q ss_pred ----cccccchhhHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHhcCCCCcchH---------------
Q 020838 157 ----LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----QTHVYRRPAVFSKP--------------- 203 (320)
Q Consensus 157 ----iP~~RlKr~~~la~~~Il~v~a~iv~----------Lg~~~h~----~~~vlg~~~~~~~~--------------- 203 (320)
+|+||+|++.+......+.+.+..++ +..+.|. .++.++.+..+|..
T Consensus 79 P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~~g~~~ 158 (299)
T PRK13592 79 PHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVMMILNL 158 (299)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhhhchhh
Confidence 99999999876665533333322221 1112220 12223333222111
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838 204 ------------------LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 204 ------------------v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i 263 (320)
.+++....++.++++||.||+|| |||+++ .+|+|+++|+|++.+++.++..++.+...
T Consensus 159 ~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~ 234 (299)
T PRK13592 159 YTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNF 234 (299)
T ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhh
Confidence 12344556677899999999999 899975 99999999999999999988777666543
No 41
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.74 E-value=1.3e-16 Score=153.52 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=66.4
Q ss_pred HHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHhhccccc
Q 020838 216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNF 295 (320)
Q Consensus 216 ~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vla~~L~~~~~~ 295 (320)
++++++||++|+||||+.|.+|+|+++|++++.++..+++.++|++.++.....-..+...+.+-+-.+-...+|.-++.
T Consensus 193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~ 272 (307)
T PRK13591 193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP 272 (307)
T ss_pred HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence 77889999999999999999999999999999999999999999988766554323333334443445555666666666
Q ss_pred cCCCCch
Q 020838 296 IPLNDSF 302 (320)
Q Consensus 296 Vd~~~~~ 302 (320)
.+.+.++
T Consensus 273 ~~~~~~~ 279 (307)
T PRK13591 273 FENEPSF 279 (307)
T ss_pred cccCcHH
Confidence 6666664
No 42
>PLN02922 prenyltransferase
Probab=99.71 E-value=1.5e-15 Score=146.69 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=116.5
Q ss_pred HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccc---ccccc
Q 020838 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPLLR 161 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDk---iP~~R 161 (320)
+++.+++-.||+|...+..+++.|..+|......++ +...+..++++++.+...|.+|||+|.+ +|+ ..+.|
T Consensus 14 ~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~---~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~ 90 (315)
T PLN02922 14 RATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFD---ARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVN 90 (315)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCC
Confidence 355678889999999999999999988865434566 3334557888899999999999999986 565 11111
Q ss_pred c--hhhHHHHHH--H-------HHHH-H---HH-HHHHHHH----HHHHHHHhcCCC-----------------------
Q 020838 162 W--KRFAVAAAM--C-------ILAV-R---AV-VVQLAFY----LHMQTHVYRRPA----------------------- 198 (320)
Q Consensus 162 l--Kr~~~la~~--~-------Il~v-~---a~-iv~Lg~~----~h~~~~vlg~~~----------------------- 198 (320)
. +++.+.... | +..+ . ++ ++.+|.. .++++ +.|.
T Consensus 91 ~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt---~gP~pl~y~gLGE~~v~i~fG~l~v~g 167 (315)
T PLN02922 91 LVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ---CPPFRLSYKGLGEPLCFAAFGPLATTA 167 (315)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh---cCCcccccCcchHHHHHHHHHHHHHHH
Confidence 1 222221111 1 0000 0 11 1112221 11110 0110
Q ss_pred -----------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 199 -----------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 199 -----------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
.++..++....-+.+.+..+...++++|+|.||+.|.||+|+++|+|++.++-.++...+|+.
T Consensus 168 ~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~ 247 (315)
T PLN02922 168 FYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSL 247 (315)
T ss_pred HHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHH
Confidence 112233344555556778889999999999999999999999999999999999999999998
Q ss_pred HHHHHhhC
Q 020838 262 AILVGATS 269 (320)
Q Consensus 262 ~il~g~~~ 269 (320)
.+...+..
T Consensus 248 ~i~~v~~~ 255 (315)
T PLN02922 248 LAALGLLK 255 (315)
T ss_pred HHHHHHHh
Confidence 87765543
No 43
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.70 E-value=1.1e-15 Score=145.62 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=113.8
Q ss_pred hhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--cccc---cccc--ch
Q 020838 91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLR--WK 163 (320)
Q Consensus 91 ~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDki---P~~R--lK 163 (320)
+++-+||+|...+..+++.|..+|......+++. ..+..++++++.+...|.+|||+|.+ .|+- .+.| .+
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~ 78 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS 78 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence 3577899999999999999999886543456632 23456778889999999999999986 4661 1111 12
Q ss_pred hhHHHHHHHHHHH------------HHH-HHHHHHHHHHHHHHh-cCC------------------------------CC
Q 020838 164 RFAVAAAMCILAV------------RAV-VVQLAFYLHMQTHVY-RRP------------------------------AV 199 (320)
Q Consensus 164 r~~~la~~~Il~v------------~a~-iv~Lg~~~h~~~~vl-g~~------------------------------~~ 199 (320)
++.+.....++.. ++. ++.+|......-..+ +.| ..
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~ 158 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS 158 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2222111111100 111 111221111000000 111 12
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 200 ~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
+++..+....-+.+.+.++-..++++|+|.||+.|.||+|+++|+|++.++-..+...+|+..+..-..
T Consensus 159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556677888999999999999999999999999999999999999999999987765444
No 44
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.66 E-value=5.4e-15 Score=140.88 Aligned_cols=169 Identities=20% Similarity=0.152 Sum_probs=110.8
Q ss_pred ccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--cc---c------cccccchh
Q 020838 96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--ID---K------LPLLRWKR 164 (320)
Q Consensus 96 RPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--ID---k------iP~~RlKr 164 (320)
||+|...+..+++.|..+|.... .++ +...+.++++++++....|.+|||+|.+ +| + ++.+.++.
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~---~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFV---WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-Ccc---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 99999999999999998885432 555 3334556788889999999999999984 24 3 56666655
Q ss_pred hHHHHHHHHHHH----HHH---------------HHHHHHHHHHHHHHh-cCCC--------------------------
Q 020838 165 FAVAAAMCILAV----RAV---------------VVQLAFYLHMQTHVY-RRPA-------------------------- 198 (320)
Q Consensus 165 ~~~la~~~Il~v----~a~---------------iv~Lg~~~h~~~~vl-g~~~-------------------------- 198 (320)
+.+.....++.. .+. ++.+|......-..+ +.|.
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y 156 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence 544332211111 110 111122110000000 1111
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 199 ----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 199 ----~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
.++....+...-..+.+..+...|+++|+|+||+.|.||+|+++|+|++.++-..+...+|+..++....
T Consensus 157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~ 230 (284)
T TIGR00751 157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA 230 (284)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233334566788899999999999999999999999999999999999999999887765443
No 45
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.60 E-value=6.6e-14 Score=134.41 Aligned_cols=179 Identities=21% Similarity=0.247 Sum_probs=118.8
Q ss_pred HHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh--ccc--------
Q 020838 87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK-------- 156 (320)
Q Consensus 87 ~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~E--IDk-------- 156 (320)
+.+.+++..||||..++..+++.|..+|......++ +...+.+++++++.+...|..|||+|.+ .|.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 346789999999999999999999999866443344 4555678999999999999999999986 662
Q ss_pred ---cccccchhhHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHh-cCCC--------------------
Q 020838 157 ---LPLLRWKRFAVAAAMCILAVRA-----V---------VVQLAFYLHMQTHVY-RRPA-------------------- 198 (320)
Q Consensus 157 ---iP~~RlKr~~~la~~~Il~v~a-----~---------iv~Lg~~~h~~~~vl-g~~~-------------------- 198 (320)
+-+-+.|+...+... ++...+ + ++.+|..+...-..+ |+|.
T Consensus 84 ~g~I~~~~~k~~~~l~l~-l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~ 162 (303)
T COG1575 84 SGLIVRQSMKPALILSLA-LFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLI 162 (303)
T ss_pred cceeecccCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHH
Confidence 334444444322211 111111 1 112222111100000 1121
Q ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020838 199 ----------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268 (320)
Q Consensus 199 ----------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~ 268 (320)
.++...........+-+..+...+.+.|+|-|++.|.+|+|+|+|+|++..+=..++..+|++.++.-..
T Consensus 163 v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~ 242 (303)
T COG1575 163 VLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVIL 242 (303)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233334445566789999999999999999999999999999999999999999988775443
Q ss_pred C
Q 020838 269 S 269 (320)
Q Consensus 269 ~ 269 (320)
.
T Consensus 243 ~ 243 (303)
T COG1575 243 G 243 (303)
T ss_pred H
Confidence 3
No 46
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.60 E-value=4.8e-14 Score=128.24 Aligned_cols=120 Identities=28% Similarity=0.381 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhhHHHHHHHHHHHHHHHH---------------HHHH
Q 020838 130 LEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAF 185 (320)
Q Consensus 130 L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~~~la~~~Il~v~a~iv---------------~Lg~ 185 (320)
+..+++++++..+++.+||++|+|.|+ +|.++++++.......++.+-+.++ .+..
T Consensus 26 ~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~ 105 (257)
T PF01040_consen 26 LLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG 105 (257)
T ss_pred HHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344555567788889999999999999 5677887664433222111111110 1111
Q ss_pred HHHHHH-HHhcCCC-----------------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhh
Q 020838 186 YLHMQT-HVYRRPA-----------------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVR 241 (320)
Q Consensus 186 ~~h~~~-~vlg~~~-----------------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~ 241 (320)
+.|... ..++.+. ..+.+......+..++...+...+|++|+||||+.|.+|+|++
T Consensus 106 ~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~ 185 (257)
T PF01040_consen 106 LLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVL 185 (257)
T ss_pred HHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHH
Confidence 233210 1111111 1133444555555778888888999999999999999999999
Q ss_pred hChHHHHH
Q 020838 242 LGQKRVFW 249 (320)
Q Consensus 242 lG~k~a~~ 249 (320)
+|++++..
T Consensus 186 ~G~~~~~~ 193 (257)
T PF01040_consen 186 LGEKKARY 193 (257)
T ss_pred HHHHHHHH
Confidence 99999998
No 47
>PLN02776 prenyltransferase
Probab=99.53 E-value=1e-12 Score=128.36 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=125.3
Q ss_pred hccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhh
Q 020838 95 SRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRF 165 (320)
Q Consensus 95 sRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~ 165 (320)
++|.-+....+..++|+++|.+... + +..++..+++..++.+.+|++||++|+|||+ +|.||+++.
T Consensus 2 ~Kpri~~lv~~ta~~G~~lA~~~~~--~---~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~ 76 (341)
T PLN02776 2 SKARLSALVVATSGAGFVLGSGEAI--D---LPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVP 76 (341)
T ss_pred CcchhHHHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHH
Confidence 4666677778888899988744322 2 2234455777788899999999999999998 999999988
Q ss_pred HHHHHHHHHHHHHH------------HH-H--HHHHHHHHHHHhcCCC------------------------CcchHHHH
Q 020838 166 AVAAAMCILAVRAV------------VV-Q--LAFYLHMQTHVYRRPA------------------------VFSKPLIF 206 (320)
Q Consensus 166 ~~la~~~Il~v~a~------------iv-~--Lg~~~h~~~~vlg~~~------------------------~~~~~v~~ 206 (320)
.++.+..++...++ .+ . +.+|...++. +++-. ..+...++
T Consensus 77 ~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~ 155 (341)
T PLN02776 77 HAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-LKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMV 155 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-HccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 76554433222111 11 1 1112212222 22100 23444556
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhh--ChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRL--GQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFT 284 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~l--G~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~v 284 (320)
+.+.+++|...=.-.-.+.|.|-|++.|++.+|+.- |++.+..+....+.+.-+..+..+......+ .++.+-++
T Consensus 156 Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~---~~~~a~~l 232 (341)
T PLN02776 156 LAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSP---FALEAALL 232 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHH
Confidence 666677888743333344555578899999999855 6777777777777666555554443322233 55666666
Q ss_pred HHHHhhccccccCCCCc
Q 020838 285 LDHISCCPLNFIPLNDS 301 (320)
Q Consensus 285 la~~L~~~~~~Vd~~~~ 301 (320)
-+.+++++++.++.+|+
T Consensus 233 ~~~~l~~~~~~~~~~~~ 249 (341)
T PLN02776 233 TAYLAASAASFYREPTN 249 (341)
T ss_pred HHHHHHHHHHHhcCCCh
Confidence 77888999999977663
No 48
>PRK08238 hypothetical protein; Validated
Probab=99.20 E-value=3.3e-10 Score=115.27 Aligned_cols=178 Identities=19% Similarity=0.115 Sum_probs=106.6
Q ss_pred hhcccceeeecccCCCCCCCCCCCCCCCCchhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHH
Q 020838 51 QKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVL 130 (320)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L 130 (320)
+..++.++||..++-... ..+...|....++.+..+++|+|++|||.|++..+.++ +.+.+.. .. ++..+..++
T Consensus 156 ~~A~~av~Vn~~~~l~~~--a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~--~~~~~~~~~ 229 (479)
T PRK08238 156 AAARRAIVVGASPGVARA--ARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FG--DLQALLAAL 229 (479)
T ss_pred HhCCCeEEECCCHHHHHH--HHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cC--ChHHHHHHH
Confidence 455566667755431110 11122333445566777899999999999999998755 6655522 11 222233344
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhhccc---------cccccchhhHHHHHHHHHHHHHHHH----H-------HHHH--HH
Q 020838 131 EAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVVV----Q-------LAFY--LH 188 (320)
Q Consensus 131 ~~lva~l~~n~~i~giNd~fD~EIDk---------iP~~RlKr~~~la~~~Il~v~a~iv----~-------Lg~~--~h 188 (320)
.++++..++.++++.+||++|+|+|+ +|+||++....+....++.+.++.+ + ++.+ ..
T Consensus 230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~ 309 (479)
T PRK08238 230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTL 309 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555567778888999999999999 9999998887655543332222111 1 1111 11
Q ss_pred HHHHHhcC-CC---------------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCC
Q 020838 189 MQTHVYRR-PA---------------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI 235 (320)
Q Consensus 189 ~~~~vlg~-~~---------------------~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi 235 (320)
.++..+++ +. ..+.+.|+ .++.+++....++.|...|++++++.|-
T Consensus 310 ~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~wl-l~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 310 AYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFWL-LAFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HhhHHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 12222332 11 11233333 3355567788999999999999999885
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.8e-09 Score=100.51 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=106.2
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
-+...++|+++.+|.-+....+..++|+.+|... ..+ ...++.++++..++.+.++++|.++|+|||+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~---~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SIN---PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--ccc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 3467889999999999999999999999998541 222 2223344555555666778999999999999
Q ss_pred --cccccchhhHHHHHHHHHHHHHHHH-------------HHHHHHH--HHHHHhcCCC---------------------
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRAVVV-------------QLAFYLH--MQTHVYRRPA--------------------- 198 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a~iv-------------~Lg~~~h--~~~~vlg~~~--------------------- 198 (320)
+|.|+++.+.++.+...+.+.++.. ..+++.| .+|.+++|..
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA 168 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA 168 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence 9999999998888776655543222 2233333 3344454411
Q ss_pred ---CcchHHHHHHHHHHHHH------HHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHH
Q 020838 199 ---VFSKPLIFATAFMSFFS------VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI 252 (320)
Q Consensus 199 ---~~~~~v~~lt~f~~~f~------~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~ 252 (320)
..+...+.+.+.+++|+ +++..-+| =++.|+.-+|+.-|++.+.+-..
T Consensus 169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I~ 225 (304)
T COG0109 169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQIL 225 (304)
T ss_pred eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHHH
Confidence 12333444555555544 44444333 25789999999999998887443
No 50
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.01 E-value=2.1e-09 Score=102.37 Aligned_cols=208 Identities=14% Similarity=0.102 Sum_probs=133.3
Q ss_pred HHHhhhhhccchhHHhHHH-HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc---------c
Q 020838 88 LDAFYRFSRPHTVIGTALS-IVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L 157 (320)
Q Consensus 88 l~a~~kfsRPhTiigt~l~-~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk---------i 157 (320)
.+.|-|++|-..-+||=+- --+..-++....++..|..-. +..+=+..+.|+++.+.|||+.|+|+|+ +
T Consensus 64 ~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~m-L~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPl 142 (353)
T KOG1381|consen 64 WKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKM-LALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPL 142 (353)
T ss_pred chhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHH-HHHhcccHHHhccCCceehhhhhhhhhhhHhhhccccc
Confidence 5688899998888887331 111222222222222222211 1122334467899999999999999999 7
Q ss_pred ccccchhhHHHHHHHHHHHH--HHHHHHHHH---------------------HHHHHHHhcCCCC-------------cc
Q 020838 158 PLLRWKRFAVAAAMCILAVR--AVVVQLAFY---------------------LHMQTHVYRRPAV-------------FS 201 (320)
Q Consensus 158 P~~RlKr~~~la~~~Il~v~--a~iv~Lg~~---------------------~h~~~~vlg~~~~-------------~~ 201 (320)
-+|+++.+..+.++..-... +++++|-.| -|.-..++|..+. .+
T Consensus 143 AsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~g~~~ 222 (353)
T KOG1381|consen 143 ASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALKGSLS 222 (353)
T ss_pred ccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhcCccC
Confidence 78999888776665322222 222222111 1111123333221 11
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHH
Q 020838 202 K-PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVY 280 (320)
Q Consensus 202 ~-~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~ 280 (320)
+ .+.-+-..-.+|++.-+.+++-||-+-|-+-|++|-+.|+|.+.=.|++. +-......+..+|+.+..+| .+..
T Consensus 223 ~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~---pyy~ 298 (353)
T KOG1381|consen 223 PSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTW---PYYA 298 (353)
T ss_pred hhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCc---hHHH
Confidence 2 12223333447999999999999999999999999999999987777764 44555666677789888888 5556
Q ss_pred HHHHHHHHhhccccccCCCC
Q 020838 281 FSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 281 ~h~vla~~L~~~~~~Vd~~~ 300 (320)
+.++.++=|-.|-..||+++
T Consensus 299 ~lg~~~~~L~~~i~~vdiDn 318 (353)
T KOG1381|consen 299 ALGAVAARLGSQIYKVDIDN 318 (353)
T ss_pred HHHHHHHHHHhheeeeecCC
Confidence 67888899999999999976
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=98.94 E-value=7.5e-08 Score=92.72 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-------
Q 020838 84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------- 156 (320)
Q Consensus 84 ~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk------- 156 (320)
.++.+++++|.+|||.|+...+....+ +.+.+. .+.. .+...+.++++..++++.++.+||++|+|+|+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 456788999999999999988865544 333221 1111 12223334444445677778999999999999
Q ss_pred --cccccchhhHHHHHHHHHHHHH
Q 020838 157 --LPLLRWKRFAVAAAMCILAVRA 178 (320)
Q Consensus 157 --iP~~RlKr~~~la~~~Il~v~a 178 (320)
+|+||++....+....++...+
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHH
Confidence 8999998887766654443333
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=96.12 E-value=0.094 Score=49.89 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838 220 LFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA 267 (320)
Q Consensus 220 i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~ 267 (320)
=-++-.|.|-||+.||-|+++.+|+...-.+-..++..-|.+..+.|.
T Consensus 247 hsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~ 294 (359)
T KOG4581|consen 247 HSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL 294 (359)
T ss_pred ccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999988888888888988877765
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=94.32 E-value=0.016 Score=57.28 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=59.7
Q ss_pred hhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc-----
Q 020838 82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----- 156 (320)
Q Consensus 82 ~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk----- 156 (320)
+-.+++++.|+|+++|.--.-..+...+||.+|-+. ++ +..++..-+...+..+.+|++||+++.+.|.
T Consensus 88 ~lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s---~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT 161 (409)
T KOG1380|consen 88 TLPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FS---FPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRT 161 (409)
T ss_pred CCCcchHHHHHHhcccceEEEEeeeccccccccccC---CC---cchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhh
Confidence 344678899999999987766677778888776332 32 2233333344444466778999999999998
Q ss_pred ----cccccchhhHHHHHHH
Q 020838 157 ----LPLLRWKRFAVAAAMC 172 (320)
Q Consensus 157 ----iP~~RlKr~~~la~~~ 172 (320)
+|.+|++.--++.+..
T Consensus 162 ~~Rplv~g~isp~hA~~fAt 181 (409)
T KOG1380|consen 162 QNRPLVRGRISPLHAVTFAT 181 (409)
T ss_pred cccccccCccChHHHHHHHH
Confidence 9999998776655553
No 54
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=86.35 E-value=4.7 Score=39.04 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCChhhhhhcC-Cccchh-hhChHHHHHHHHHHHHHHHHHHHH
Q 020838 209 AFMSFFSVVIALFKDVPDLEGDKTFG-IRTFTV-RLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 209 ~f~~~f~~~i~i~KDi~DieGDr~~G-i~Tlpv-~lG~k~a~~la~~ll~~~y~~~il 264 (320)
....+...+-.+++|.-|.|-|+..+ -|.+|. ++.+|.+..++..++.++.+..+.
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~ 118 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFI 118 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667788999999999999776 233333 356777777776666555444443
No 55
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=84.41 E-value=8 Score=36.40 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCccchhhhC---hHHHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLLEVAYT 260 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG---~k~a~~la~~ll~~~y~ 260 (320)
..+...+-.+++|+.|.|-|+++ -+.=|+.-| ++.+..++..+..++.+
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~~~ 97 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILGLI 97 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555667899999999999988 455666656 56666666555544433
No 56
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=75.11 E-value=23 Score=34.48 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=24.1
Q ss_pred HhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHH
Q 020838 221 FKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 221 ~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~ 258 (320)
++|..|.|-||.+. .+-|+ ++.++.+..++.++..++
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ls~~~a~~~~~~~~~la 111 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGEFSRRQGQRIVIITGILA 111 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999654 56655 344555555554444443
No 57
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=71.89 E-value=32 Score=32.33 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhcCC
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDKTFGI 235 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr~~Gi 235 (320)
....+++...+..+++|..|.|-|+.+.-
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 33345567778889999999999987543
No 58
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=71.68 E-value=26 Score=33.05 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCccchhhhC---hHHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTCISLLEVAY 259 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG---~k~a~~la~~ll~~~y 259 (320)
++...+-.+++|+-|.|-||++. +.=|+.-| ++.+..++..+..++.
T Consensus 48 ~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g~ 97 (276)
T PRK12882 48 FLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAGV 97 (276)
T ss_pred HHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 34556677999999999999765 55555444 6667666665555443
No 59
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=71.14 E-value=27 Score=33.97 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCChhhhhhc---CCccchh-hhChHHHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTF---GIRTFTV-RLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~---Gi~Tlpv-~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.+.+..+++|+-|.|=||++ .-|-+|. ++.++.+..++..++.++.+.+
T Consensus 57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la 110 (295)
T PRK12324 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALA 110 (295)
T ss_pred HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 344567799999999999995 2334433 4566777777666655554443
No 60
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=70.31 E-value=34 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAY 259 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~y 259 (320)
.++...+-.+++|+-|.|-||+.. +.=|+ ++.++.+..++..+..++.
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 335556677999999999999764 44444 4556777777665555544
No 61
>PRK13591 ubiA prenyltransferase; Provisional
Probab=69.55 E-value=87 Score=30.90 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhhhc
Q 020838 187 LHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTF 233 (320)
Q Consensus 187 ~h~~~~vlg~~~~~~~~v~~lt~f~~~f~~~i~i~KDi~DieGDr~~ 233 (320)
.|+-..+.|.+..++... ...+.+.+..+++|.-|.|-|+.+
T Consensus 48 ~~~a~lL~g~~~~~~~~~-----~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 48 IHIAFLLLGLQSSILTCI-----AGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHhCCCcchHHHH-----HHHHHHHHHHHHhhhccchhhhcc
Confidence 344334567665543332 234567888999999999999885
No 62
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=69.24 E-value=95 Score=29.47 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~~ 258 (320)
.+...+-.+++|.-|.|-|++.. -|.+|. ++.++.+..++..+..++
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~ 105 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIA 105 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34556667999999999998633 244443 455677766665554444
No 63
>PLN00012 chlorophyll synthetase; Provisional
Probab=68.62 E-value=35 Score=34.38 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCccchhhhC---hHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGIRTFTVRLG---QKRVFWTC 251 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG---~k~a~~la 251 (320)
+...+-.+++|.-|.|-|++.+ +.=|+.=| ++.+..++
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHH
Confidence 4455678999999999999876 44444434 55555533
No 64
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=66.37 E-value=33 Score=32.53 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCChhhhhhc---CCccchh-hhChHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTF---GIRTFTV-RLGQKRVFWTCISL 254 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~---Gi~Tlpv-~lG~k~a~~la~~l 254 (320)
..+...+-.+++|+-|.|-|++. .-|.+|. ++.++.+..++..+
T Consensus 45 ~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 92 (282)
T TIGR01475 45 AVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS 92 (282)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH
Confidence 34566777899999999999986 3344544 46667777665543
No 65
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=63.19 E-value=40 Score=32.69 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~y~ 260 (320)
+...+-.+++|.-|.|-||+.+ ++=|+ ++.++.+..++..+..++.+
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 3456677999999999999764 33344 45566777766655554443
No 66
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=63.04 E-value=48 Score=31.50 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCC---ccchh-hhChHHHHHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi---~Tlpv-~lG~k~a~~la~~ll~~~y~~~ 262 (320)
.+...+..+++|+-|.|=||++-- |-+|. +..++.+..++..++.+..+.+
T Consensus 57 ~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a 111 (289)
T COG0382 57 FLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA 111 (289)
T ss_pred HHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345566779999999999998865 34443 2334445555544444443333
No 67
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=60.87 E-value=60 Score=32.04 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=33.4
Q ss_pred HHHHhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHHHHHHHHHHh
Q 020838 218 IALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAYTVAILVGA 267 (320)
Q Consensus 218 i~i~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~y~~~il~g~ 267 (320)
-.+++|.-|.|=|+..+ +|=|+ ++.+|.+..++..+..++.+..+.++.
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~ 117 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGL 117 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999764 44444 344777877777666666555554443
No 68
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=59.22 E-value=55 Score=31.56 Aligned_cols=46 Identities=13% Similarity=-0.032 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCC-ccchhhhC---hHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGI-RTFTVRLG---QKRVFWTCISLLEV 257 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tlpv~lG---~k~a~~la~~ll~~ 257 (320)
++...+-.+++|+.|.|-|++..- +.=|+-=| ++.+..++..+..+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~ 104 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLL 104 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344555669999999999987542 34555555 55565555444433
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=59.06 E-value=66 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCChhhhhhcCCccchhh---hChHHHHHHHHHHHHHH
Q 020838 214 FSVVIALFKDVPDLEGDKTFGIRTFTVR---LGQKRVFWTCISLLEVA 258 (320)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~Gi~Tlpv~---lG~k~a~~la~~ll~~~ 258 (320)
...+-.+++|+-|.|-|+.+. ++=|+. +-++.+..++..+..++
T Consensus 49 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~g 95 (277)
T PRK12883 49 GCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAVG 95 (277)
T ss_pred HHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 345678999999999999765 444544 45666666665554443
No 70
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=58.17 E-value=30 Score=32.70 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~ 258 (320)
.+...+-.+++|.-|.|-|++.+ ++=|+ ++-+|.+.+++..+..++
T Consensus 48 ~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 48 PLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34556677999999999999765 33333 344566666655444443
No 71
>PRK08238 hypothetical protein; Validated
Probab=58.10 E-value=60 Score=33.68 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCChhhhhhcCC-ccchh---hhChHHHHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGI-RTFTV---RLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi-~Tlpv---~lG~k~a~~la~~ll~~~y~~~i 263 (320)
+.+.+..+++|+-|.|-||++-. +.=|+ ++..+.+..++.+++.++.+.+.
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~ 291 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL 291 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566779999999999999732 22232 45566666666666555544433
No 72
>PRK13595 ubiA prenyltransferase; Provisional
Probab=57.21 E-value=77 Score=31.00 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhcCCccchh---hhChHHHHHHHHHHHHHHHHHH
Q 020838 208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV---RLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv---~lG~k~a~~la~~ll~~~y~~~ 262 (320)
..+..-....+..++|.-|.|-|+++-- +=|+ ++.++.+..++..+...+..+.
T Consensus 53 ~~~~~p~n~~~~giND~fD~eiDa~Npr-~~~i~~G~is~~~~~~~~~~~~~~~~~~~ 109 (292)
T PRK13595 53 LYLTLPFNLLIYGLNDLADRETDAASPR-KGGWQGARLSPGEVRPLLRAVLLLNAPFL 109 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCC-CCCCCcCccCHHHHHHHHHHHHHHHHHHH
Confidence 3344445677889999999999985432 2222 5566666665555554444333
No 73
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=57.10 E-value=80 Score=30.55 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCChhhhhhcC---Cccch-hhhChHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFG---IRTFT-VRLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G---i~Tlp-v~lG~k~a~~la~~ll~~~y~ 260 (320)
+...+=.+++|+-|.|-|++.- -|-+| =++.++.+..++..+..+..+
T Consensus 48 ~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~ 99 (286)
T PRK12895 48 SARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEI 99 (286)
T ss_pred HHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4445556999999999998872 22232 244566666666555554433
No 74
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=57.05 E-value=77 Score=28.52 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCChhhhhhc
Q 020838 212 SFFSVVIALFKDVPDLEGDKTF 233 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~ 233 (320)
.+...+..+++|.-|.|=|+..
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred HHHHHHHHHhhChhhhhcCccc
Confidence 3566778899999999999995
No 75
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=56.40 E-value=90 Score=29.52 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~~ 258 (320)
..+...+-.+++|+-|.|-|++.. -|.+|. ++.+|.+..++..+..++
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 345556677999999999999743 344443 556777777666555444
No 76
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=56.16 E-value=1e+02 Score=29.56 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISL 254 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~l 254 (320)
.+...+-.+++|+-|.|-|++.. -|.+|. ++.++.+..++..+
T Consensus 49 ~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~ 95 (284)
T PRK12888 49 VGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVA 95 (284)
T ss_pred HHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34445567999999999999874 444443 34455555554433
No 77
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=53.79 E-value=44 Score=32.52 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCIS 253 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ 253 (320)
+++...+-.+++|+-|.|=|++.- -|-+|. ++.++.+..++..
T Consensus 58 ~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~ 104 (300)
T PRK13106 58 LFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITA 104 (300)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence 334555566899999999999873 233333 2456666655433
No 78
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=53.03 E-value=2.2e+02 Score=27.41 Aligned_cols=101 Identities=8% Similarity=0.028 Sum_probs=56.6
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHhcCCChh-----hhhhcCCccchh-hhChHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 020838 199 VFSKPLIFATAF-MSFFSVVIALFKDVPDLE-----GDKTFGIRTFTV-RLGQKRVFWTCISLLEVAYTVAILVGATSPF 271 (320)
Q Consensus 199 ~~~~~v~~lt~f-~~~f~~~i~i~KDi~Die-----GDr~~Gi~Tlpv-~lG~k~a~~la~~ll~~~y~~~il~g~~~~~ 271 (320)
.+++...+++.. +.+.-.+.++++|..|.+ .||..+.|.++- .+-+|.+.+++..++.++.+..+......+
T Consensus 24 ~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~- 102 (284)
T TIGR00751 24 AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAA- 102 (284)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 455554433333 334557788999999973 355545555543 344677888777776666555554433222
Q ss_pred hhHH----HHHHHHHHHHHHHhhccccccCCCCc
Q 020838 272 AWSK----LITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 272 ~~~~----~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
|++ .+.++|-+.++....|......++.+
T Consensus 103 -~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~ 135 (284)
T TIGR00751 103 -PNLSDLFWFIALGALCIAAAITYTVGSKPYGYA 135 (284)
T ss_pred -cchhhhHHHHHHHHHHHHHhHhhcCCCCccccC
Confidence 211 23455555555556677655555543
No 79
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=52.39 E-value=86 Score=29.85 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCChhhhhhcCC-ccchh---hhChHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGI-RTFTV---RLGQKRVFWTCISLLEVAY 259 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi-~Tlpv---~lG~k~a~~la~~ll~~~y 259 (320)
+...+-.+++|+-|.|-|++..- +.=|+ ++.++.+..++..+..+..
T Consensus 51 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~ 101 (281)
T TIGR01474 51 LMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVAL 101 (281)
T ss_pred HHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 34455669999999999986532 12333 3445666666555544443
No 80
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=50.36 E-value=51 Score=31.34 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEV 257 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~ 257 (320)
.++...+-.+++|+-|.|-|++.. -|.+|. ++.++.+..++..++.+
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 95 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSAL 95 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHH
Confidence 334566678999999999999854 344543 44667776665554333
No 81
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=49.38 E-value=61 Score=31.58 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCC-ccchh---hhChHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGI-RTFTV---RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tlpv---~lG~k~a~~la~~ll~~~ 258 (320)
++.+.+-.+++|+-|.|-||+... +.=|+ ++.++.+..++.++..+.
T Consensus 54 ~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~ 104 (294)
T PRK12873 54 LAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLS 104 (294)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345556679999999999998765 23443 455666666665554443
No 82
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=48.56 E-value=1.2e+02 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHhhhhhhhhccc-----cccccchhhHH
Q 020838 133 IAAALMMNIYIVGLNQLSDIEIDK-----LPLLRWKRFAV 167 (320)
Q Consensus 133 lva~l~~n~~i~giNd~fD~EIDk-----iP~~RlKr~~~ 167 (320)
-+++......++-.|-+.|+|-|+ =++.|+.+...
T Consensus 182 slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~ 221 (303)
T COG1575 182 SLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNA 221 (303)
T ss_pred HHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhH
Confidence 344455566778899999999999 56667755543
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=48.13 E-value=1.2e+02 Score=28.72 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEVAY 259 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~~y 259 (320)
+...+-.+++|+-|.|-||+.. -|.+|. ++.++.+...+..+..++.
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~ 103 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAF 103 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3445677999999999998533 243433 3456666666665555543
No 84
>COG2149 Predicted membrane protein [Function unknown]
Probab=45.56 E-value=2e+02 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh--ccc---ccc
Q 020838 129 VLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPL 159 (320)
Q Consensus 129 ~L~~lva~l~~n~~i~giNd~fD~E--IDk---iP~ 159 (320)
.+.++++.+.+-....|.|++.|.| +|+ .|.
T Consensus 58 ~lg~fii~~gil~~a~g~~r~~~~~~amrr~~~~p~ 93 (120)
T COG2149 58 LLGVFLILVGILLAALGALRWQRVERAMRRGFYLPY 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 3445555556666667899998877 666 554
No 85
>PRK13592 ubiA prenyltransferase; Provisional
Probab=44.89 E-value=48 Score=32.63 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCC-ccchh-hhChHHHHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFGI-RTFTV-RLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~Gi-~Tlpv-~lG~k~a~~la~~ll~~~y~~ 261 (320)
+++++.+-.+++|..|.|=||.+-= |=+|- +.-+|.+...+..+..++...
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L 107 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLL 107 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999988642 22221 344566666666664444443
No 86
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=44.75 E-value=1.3e+02 Score=24.72 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=33.0
Q ss_pred CchhhHHHHHHHhhhhhccchhHHhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHH
Q 020838 79 SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMN 140 (320)
Q Consensus 79 ~~~~~~~~~l~a~~kfsRPhTiigt~l~~l~g~llA~~~~~~~~~~~~~~~L~~lva~l~~n 140 (320)
..|..+.+++++.+ ..+.+..++++...+-..-+...+.-..+-++++++++.....
T Consensus 6 ~~W~~ll~wl~~~~-----~~~~~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~ 62 (100)
T PF05106_consen 6 DFWAQLLAWLQSHW-----PQIYGALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARS 62 (100)
T ss_pred cHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887777 6667777777776665433333333333444444444443333
No 87
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=42.86 E-value=82 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 020838 243 GQKRVFWTCISLLEVAYTVAILVGATSPF 271 (320)
Q Consensus 243 G~k~a~~la~~ll~~~y~~~il~g~~~~~ 271 (320)
|+|.+-++...++.+..+++.+.|+....
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~ 33 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQS 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999986543
No 88
>PLN02922 prenyltransferase
Probab=42.74 E-value=3.4e+02 Score=26.61 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHhHhhhhhhhhccc
Q 020838 137 LMMNIYIVGLNQLSDIEIDK 156 (320)
Q Consensus 137 l~~n~~i~giNd~fD~EIDk 156 (320)
.+....++-.|++.|+|-|+
T Consensus 198 gll~~~iL~~Nn~rD~e~D~ 217 (315)
T PLN02922 198 GLTTTLILFCSHFHQIDGDR 217 (315)
T ss_pred HHHHHHHHHHccCcchhhHH
Confidence 34455678899999999999
No 89
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=38.81 E-value=1.8e+02 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHhcCCChhhhhhcCCcc
Q 020838 220 LFKDVPDLEGDKTFGIRT 237 (320)
Q Consensus 220 i~KDi~DieGDr~~Gi~T 237 (320)
.++|+-|.|-||.+.-|.
T Consensus 63 ~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 63 GVNDVFDADTDELNPKKD 80 (282)
T ss_pred cchhhhhhhccccCCCcc
Confidence 479999999999887665
No 90
>PLN02776 prenyltransferase
Probab=38.09 E-value=2.3e+02 Score=28.40 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhcCC---ccch-hhhChHHHHHHHHHHHH
Q 020838 208 TAFMSFFSVVIALFKDVPDLEGDKTFGI---RTFT-VRLGQKRVFWTCISLLE 256 (320)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi---~Tlp-v~lG~k~a~~la~~ll~ 256 (320)
+..+++...+-.+++|+-|.|-|++..- |-+| =++.++.+..++..+..
T Consensus 35 ~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~ 87 (341)
T PLN02776 35 CAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGA 87 (341)
T ss_pred HHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3344455566779999999999988553 2232 24556666665544443
No 91
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=37.70 E-value=1.3e+02 Score=28.97 Aligned_cols=47 Identities=23% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEVAY 259 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~~y 259 (320)
+...+-.+++|+-|.|=||+.. -|.+|. ++.++.+..++..+..+..
T Consensus 57 ~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~ 107 (290)
T PRK12870 57 ATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAA 107 (290)
T ss_pred HHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4556667999999999997533 233332 3455666655554444433
No 92
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.65 E-value=3.7e+02 Score=25.59 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=42.3
Q ss_pred hhhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcC---CC-CcchHHHHHHHHHHHHHHHHHHHhc
Q 020838 149 LSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLH-MQTHVYRR---PA-VFSKPLIFATAFMSFFSVVIALFKD 223 (320)
Q Consensus 149 ~fD~EIDkiP~~RlKr~~~la~~~Il~v~a~iv~Lg~~~h-~~~~vlg~---~~-~~~~~v~~lt~f~~~f~~~i~i~KD 223 (320)
.-|...|+|-+.|-+|+.+++=+..-+.++++--.||... -|+.+-.. +. +.+....+.-.|.++++.+...+.+
T Consensus 87 vlD~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~lA 166 (233)
T KOG4016|consen 87 VLDVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVLA 166 (233)
T ss_pred HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888887665556665555555322 23322111 11 1233333444445555555544444
Q ss_pred CCCh
Q 020838 224 VPDL 227 (320)
Q Consensus 224 i~Di 227 (320)
.+|.
T Consensus 167 ~qR~ 170 (233)
T KOG4016|consen 167 FQRY 170 (233)
T ss_pred HHHH
Confidence 4333
No 93
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=35.63 E-value=2.3e+02 Score=22.60 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhccc
Q 020838 121 ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK 156 (320)
Q Consensus 121 ~~~~~~~~~L~~lva~l~~n~~i~giNd~fD~EIDk 156 (320)
.+...+.++.+.+++.+....|..--|+.+|...++
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~ 87 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARA 87 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence 555567777888888888999999999999988764
No 94
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=35.20 E-value=3e+02 Score=25.97 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCChh--hhhh---cCCccchh-hhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLE--GDKT---FGIRTFTV-RLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTL 285 (320)
Q Consensus 212 ~~f~~~i~i~KDi~Die--GDr~---~Gi~Tlpv-~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vl 285 (320)
.+...+-.+++|.-|.| =|++ .+-|.+|- ++-++.+.+++..+..++.+..+.+.... . ....+++-..+
T Consensus 48 ~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~--~--~~~~~~~~~~~ 123 (293)
T PRK06080 48 LLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS--G--WWLLLLGLLCI 123 (293)
T ss_pred HHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--h--HHHHHHHHHHH
Confidence 34556678999999984 3532 22333332 34467777776666555544433332221 1 12334444434
Q ss_pred HHHhhcccc
Q 020838 286 DHISCCPLN 294 (320)
Q Consensus 286 a~~L~~~~~ 294 (320)
.....|...
T Consensus 124 ~~~~~Ys~~ 132 (293)
T PRK06080 124 AAAILYTGG 132 (293)
T ss_pred HHhhhhcCC
Confidence 444556543
No 95
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=34.77 E-value=4.2e+02 Score=25.41 Aligned_cols=84 Identities=11% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCChhhhhhcC------Cccchh-hhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFG------IRTFTV-RLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTL 285 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G------i~Tlpv-~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vl 285 (320)
+...+-.+++|..|.|=|+... -|+++. ++-++.+..++..+..++.+..+...... +| ....++-..+
T Consensus 51 l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~--~~--~~l~l~~~~~ 126 (296)
T PRK05951 51 LLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR--GI--GAVTLALLGV 126 (296)
T ss_pred HHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cH--HHHHHHHHHH
Confidence 4556678999999955554443 233332 35577778777766555544433322221 22 2334444444
Q ss_pred HHHhhccccccCCCC
Q 020838 286 DHISCCPLNFIPLND 300 (320)
Q Consensus 286 a~~L~~~~~~Vd~~~ 300 (320)
.....|.......+.
T Consensus 127 ~~~~~Yt~~P~~lky 141 (296)
T PRK05951 127 FLWTCYMGPPFFLKY 141 (296)
T ss_pred HHHHHHcCCCcccCC
Confidence 455556555444443
No 96
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=33.17 E-value=55 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCChhhhh----------hcCCccchhhhChHHHHHH
Q 020838 209 AFMSFFSVVIALFKDVPDLEGDK----------TFGIRTFTVRLGQKRVFWT 250 (320)
Q Consensus 209 ~f~~~f~~~i~i~KDi~DieGDr----------~~Gi~Tlpv~lG~k~a~~l 250 (320)
-+..-...+..+.+|+.|+.+|. +.|..|+|...+++.....
T Consensus 153 ~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 153 DYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 33445667778999999999998 8999999999985444443
No 97
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=32.03 E-value=4.8e+02 Score=25.25 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCChhhhhhc------------CCccchh-hhChHHHHHHHHHHHHHHHH
Q 020838 215 SVVIALFKDVPDLEGDKTF------------GIRTFTV-RLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 215 ~~~i~i~KDi~DieGDr~~------------Gi~Tlpv-~lG~k~a~~la~~ll~~~y~ 260 (320)
+.| .+++|+-|.|=|+.. .-|.+|. ++-+|.+..++..+..++.+
T Consensus 55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~ 112 (297)
T PRK12871 55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSA 112 (297)
T ss_pred HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 444 499999999999753 1233322 55667777766655554433
No 98
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=30.18 E-value=3.2e+02 Score=26.26 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCcc--chhhhC---hHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGIRT--FTVRLG---QKRVFWTC 251 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~T--lpv~lG---~k~a~~la 251 (320)
+...+-.+++|+-|.|-|++.- || =|+.-| ++.+..+.
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~-RT~~RPL~sG~is~~~A~~~~ 95 (291)
T PRK12886 53 GARTAAMGFNRLIDAEIDARNP-RTAGRAIPAGLISKGSAILFI 95 (291)
T ss_pred HHHHHHHHHHhHHhhccCCCCC-CCCCCCCCCCCcCHHHHHHHH
Confidence 3445566899999999999774 22 344444 56555543
No 99
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=30.09 E-value=3.9e+02 Score=25.74 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHH
Q 020838 214 FSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLL 255 (320)
Q Consensus 214 f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll 255 (320)
...+-.+++|+-|.|=|++.- -|-+|. ++-++.+..++..+.
T Consensus 59 ~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~ 104 (291)
T PRK12874 59 ARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNA 104 (291)
T ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 334456899999999998884 343332 334555655554443
No 100
>PRK10581 geranyltranstransferase; Provisional
Probab=29.80 E-value=91 Score=30.20 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~ 258 (320)
+.-|..-+.+++.|..|+-|+.|| -+.|..|+|+.+|.+.+...+--...-+
T Consensus 208 l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A 270 (299)
T PRK10581 208 LDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA 270 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667778899999999776 4579999999999998887666554444
No 101
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=29.55 E-value=5.4e+02 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCChhhhhhcCC---ccchh-hhChHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGDKTFGI---RTFTV-RLGQKRVFWTCISL 254 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGDr~~Gi---~Tlpv-~lG~k~a~~la~~l 254 (320)
.+...+-.+++|+-|.|-|++... |-+|. ++.++.+...+..+
T Consensus 82 ~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~ 128 (314)
T PRK12878 82 IAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQ 128 (314)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 344566679999999999986431 22222 23456665544433
No 102
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=29.18 E-value=2.1e+02 Score=27.84 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~~ 258 (320)
.++.+.+-.+++|+-|.|=|++.. -|-+|. ++.++.+..++..+..++
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g 107 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG 107 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345556788999999999998754 344443 445666766665444333
No 103
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=27.54 E-value=2.4e+02 Score=27.06 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCChhhhhhcC---Cccchh-hhChHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFG---IRTFTV-RLGQKRVFWTCISLLEV 257 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~G---i~Tlpv-~lG~k~a~~la~~ll~~ 257 (320)
+...+-.+++|+-|.|-|++.. -|.+|. ++.+|.+..++..+..+
T Consensus 55 l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 103 (296)
T PRK04375 55 LVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVL 103 (296)
T ss_pred HHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 4455567999999999999843 333332 45667776665544433
No 104
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=27.15 E-value=5.5e+02 Score=24.53 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhcCCccc
Q 020838 204 LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238 (320)
Q Consensus 204 v~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl 238 (320)
.+.++...++|-+.++..+.++.++-|..+-.||+
T Consensus 128 ~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar~l 162 (258)
T COG0600 128 KIVIAVLGAFFPILINTLDGVRSVDPDLLELARTL 162 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 55566668889999999999999998876655554
No 105
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.96 E-value=6.2e+02 Score=24.64 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=51.4
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHhcCCChh--hhhhcCCccchhh--hChHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 020838 199 VFSKPLIFATAF-MSFFSVVIALFKDVPDLE--GDKTFGIRTFTVR--LGQKRVFWTCISLLEVAYTVAILVGATSPFAW 273 (320)
Q Consensus 199 ~~~~~v~~lt~f-~~~f~~~i~i~KDi~Die--GDr~~Gi~Tlpv~--lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~ 273 (320)
.+++...+++.. +.+.-.+-++++|..|-+ -|++.- ++ +++ ..+|.+.+++..++.++.+..+...... +|
T Consensus 44 ~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~-~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~--g~ 119 (304)
T PRK07419 44 VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-HS-VVNLTGNKSLVFWLANLFLLLGLLGILAIALQS--DW 119 (304)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cC-cccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh--cH
Confidence 455554433322 334456678999999977 565311 11 111 2367777777766665554444433322 23
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCCc
Q 020838 274 SKLITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 274 ~~~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.+..+|-+.+.....|-.....++.+
T Consensus 120 --~~l~ig~~g~~~~~~YT~gP~~l~y~ 145 (304)
T PRK07419 120 --TVLGLVLLCCFLGYLYQGPPFRLGYQ 145 (304)
T ss_pred --HHHHHHHHHHHHhheccCCCcccCCC
Confidence 24445555555556676666666554
No 106
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=25.08 E-value=6.2e+02 Score=24.31 Aligned_cols=99 Identities=13% Similarity=-0.018 Sum_probs=49.6
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHhcCCChhh--hhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHH
Q 020838 199 VFSKPLIFATAF-MSFFSVVIALFKDVPDLEG--DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSK 275 (320)
Q Consensus 199 ~~~~~v~~lt~f-~~~f~~~i~i~KDi~DieG--Dr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~ 275 (320)
.+++....++.. +.+.-.+-++.+|..|-+= |++.-.........++.+.+++..++.++.+..+...... +|
T Consensus 31 ~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~--~~-- 106 (285)
T TIGR02235 31 VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRW--QI-- 106 (285)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh--hH--
Confidence 455554433332 2344566789999988665 6532111111112245566665555555544443333221 22
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCc
Q 020838 276 LITVYFSFTLDHISCCPLNFIPLNDS 301 (320)
Q Consensus 276 ~~~~~~h~vla~~L~~~~~~Vd~~~~ 301 (320)
.+..+|-+.+.....|..-...++.+
T Consensus 107 ~~l~lg~~g~~~~~~Yt~gP~~l~y~ 132 (285)
T TIGR02235 107 TVLALVGLCCFLGYLYQGPPFRLGYQ 132 (285)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 34555655566666676665555554
No 107
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.67 E-value=89 Score=22.70 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHhHhhhhhhhhcc
Q 020838 141 IYIVGLNQLSDIEID 155 (320)
Q Consensus 141 ~~i~giNd~fD~EID 155 (320)
.|..++|-++|.+.|
T Consensus 19 lyl~ald~~CDQg~~ 33 (47)
T PRK10299 19 LWAQVFNMMCDQDVQ 33 (47)
T ss_pred HHHHHHHHHhcCCcc
Confidence 778899999999854
No 108
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=23.09 E-value=6.9e+02 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHhHhhhhhhhhccc
Q 020838 140 NIYIVGLNQLSDIEIDK 156 (320)
Q Consensus 140 n~~i~giNd~fD~EIDk 156 (320)
......+|++-|+|-||
T Consensus 173 ~~a~~ii~~irDie~Dr 189 (282)
T PRK13105 173 GMASHAFGAVQDVVADR 189 (282)
T ss_pred HHHHHHHHhCcchHhHH
Confidence 45556799999999999
No 109
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.96 E-value=4.1e+02 Score=20.72 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=33.2
Q ss_pred hcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHhhccccccCCCC
Q 020838 222 KDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITVYFSFTLDHISCCPLNFIPLND 300 (320)
Q Consensus 222 KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il~g~~~~~~~~~~~~~~~h~vla~~L~~~~~~Vd~~~ 300 (320)
||+.++|-.--.|. | .|....++.+.+. ++++........+.....++.+..-+..+.+=|++......++
T Consensus 4 kdi~~~e~ki~~Gl-T------~RQl~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~i~~~~p~~~~g~~k~~gl~~e~ 74 (93)
T PF12666_consen 4 KDISKYEEKIFFGL-T------LRQLICLAIGALV-GVGVYLLLWFFLGPDIASWIMIPIALPFAFLGFFKKDGLPLEK 74 (93)
T ss_pred cchhhccchhccCC-C------HHHHHHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhHhhhhcCCCHHH
Confidence 67777665555565 3 2444444443333 3333333333333333333444444445555566665544433
No 110
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.65 E-value=8.9e+02 Score=24.48 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHhhhhhccchhHHhHHHHHHH-HHHhhcccCCCC---hH---HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcccccc
Q 020838 89 DAFYRFSRPHTVIGTALSIVSV-ALLAVEKVSDIS---PL---FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPL 159 (320)
Q Consensus 89 ~a~~kfsRPhTiigt~l~~l~g-~llA~~~~~~~~---~~---~~~~~L~~lva~l~~n~~i~giNd~fD~EIDkiP~ 159 (320)
+..+++. .+++|..+++... .+++..+.++.. .. .+.+.+.+++-....+.++.-.=+..+..|-|+|.
T Consensus 3 ~~ii~l~--~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~ 78 (356)
T COG4956 3 KWIIILL--FIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPV 78 (356)
T ss_pred HHHHHHH--HHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4456777 8899999998888 666644443322 11 13333333333344444443333456666777665
Done!