Query 020838
Match_columns 320
No_of_seqs 211 out of 464
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 39.2 33 0.0011 31.9 4.9 55 207-261 201-266 (297)
2 3lsn_A Geranyltranstransferase 36.3 30 0.001 32.3 4.2 56 207-262 208-274 (304)
3 3llw_A Geranyltranstransferase 35.5 37 0.0013 31.8 4.7 55 207-261 215-278 (311)
4 3ts7_A Geranyltranstransferase 35.4 28 0.00097 32.8 3.9 55 207-261 214-279 (324)
5 3lom_A Geranyltranstransferase 32.2 33 0.0011 32.2 3.7 54 207-260 215-279 (313)
6 3pde_A Farnesyl-diphosphate sy 31.8 44 0.0015 31.3 4.5 57 207-263 210-277 (309)
7 1rqj_A Geranyltranstransferase 31.4 47 0.0016 30.7 4.6 56 207-262 208-274 (299)
8 3kra_B Geranyl diphosphate syn 31.3 1.7E+02 0.0058 26.6 8.3 53 211-263 69-121 (274)
9 4f62_A Geranyltranstransferase 30.2 41 0.0014 31.6 4.0 55 207-261 207-272 (317)
10 2j1p_A Geranylgeranyl pyrophos 29.1 36 0.0012 31.4 3.4 48 207-257 218-265 (293)
11 2h8o_A Geranyltranstransferase 28.9 39 0.0014 31.9 3.7 51 208-258 248-309 (335)
12 3p8r_A Geranyltranstransferase 28.1 48 0.0016 30.8 4.1 54 207-260 214-278 (302)
13 3p8l_A Geranyltranstransferase 27.4 53 0.0018 30.5 4.2 56 207-262 211-277 (302)
14 3uca_A Geranyltranstransferase 25.6 56 0.0019 30.8 4.0 49 213-261 242-301 (324)
15 1rtr_A Geranyltranstransferase 25.2 62 0.0021 29.9 4.2 56 207-262 203-269 (301)
16 3npk_A Geranyltranstransferase 22.2 77 0.0026 29.3 4.2 55 207-261 200-263 (291)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=39.25 E-value=33 Score=31.88 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-+..-+.-.
T Consensus 201 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~ 266 (297)
T 3m0g_A 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAA 266 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999999885 4678999999999999988776665555443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=36.35 E-value=30 Score=32.27 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+.-.+
T Consensus 208 l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L 274 (304)
T 3lsn_A 208 LQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHAL 274 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555667778899999999885 46789999999999999887776665554443
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=35.53 E-value=37 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhh---------hcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDK---------TFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr---------~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
+.-|..-...++.|..|+-|+.||. +.|-.|+|+.+|.+++-....-++.-+.-.
T Consensus 215 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~ 278 (311)
T 3llw_A 215 LQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLND 278 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667778999999999876 579999999999999987766555554433
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=35.39 E-value=28 Score=32.84 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+.-.
T Consensus 214 l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~ 279 (324)
T 3ts7_A 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALES 279 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999999875 5679999999999999988776665555443
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=32.22 E-value=33 Score=32.17 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~ 260 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-+..-+.-
T Consensus 215 l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~ 279 (313)
T 3lom_A 215 LRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMD 279 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999999885 467999999999999998877655554443
No 6
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=31.83 E-value=44 Score=31.30 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChhh-----------hhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i 263 (320)
+.-|..-...++.|..|+-|+.| |-+.|..|+|+.+|.+++-....-++.-++-.+-
T Consensus 210 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44455556777889999999976 4567899999999999998877777666665543
No 7
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=31.42 E-value=47 Score=30.66 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhh-----------hcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDK-----------TFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.-|..-..+++.|..|+-|+.||. +.|..|+|+.+|.+++...+.-...-+.-.+
T Consensus 208 l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L 274 (299)
T 1rqj_A 208 LDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSL 274 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667778999999998764 5689999999999988777666555554443
No 8
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=31.32 E-value=1.7e+02 Score=26.58 Aligned_cols=53 Identities=8% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838 211 MSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 211 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i 263 (320)
+=+.-.+--|-.|+++.+.|...|..|.=.++|...+...+-.++..++-.+.
T Consensus 69 iEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~ 121 (274)
T 3kra_B 69 IHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLA 121 (274)
T ss_dssp HHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 33444556688999955556679999999999999988888888777765444
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=30.21 E-value=41 Score=31.59 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+--.
T Consensus 207 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~ 272 (317)
T 4f62_A 207 LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQ 272 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999999775 4679999999999999988877665555443
No 10
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=29.12 E-value=36 Score=31.39 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEV 257 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~ 257 (320)
+.-|..-...++.|..|+-|+.||. ..|+|+.+|.+++...+.-...-
T Consensus 218 l~~~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~~~ 265 (293)
T 2j1p_A 218 LRKFARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLNTE 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667788999999999998 67999999999888877655433
No 11
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=28.91 E-value=39 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHH
Q 020838 208 TAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVA 258 (320)
Q Consensus 208 t~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~ 258 (320)
.-|..-..+++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+
T Consensus 248 ~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 248 RLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456777899999999876 4578999999999988877766555444
No 12
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=28.15 E-value=48 Score=30.79 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~ 260 (320)
+.-|..-...++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+.-
T Consensus 214 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 278 (302)
T 3p8r_A 214 LDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALL 278 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566778899999998875 467899999999999998877655554433
No 13
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=27.44 E-value=53 Score=30.54 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.-|..-..+++.|..|+-|+.|| -+.|..|+|+.+|.+++-..+.-...-+.-.+
T Consensus 211 l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L 277 (302)
T 3p8l_A 211 LTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVL 277 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566777899999998764 56799999999999999988776665554443
No 14
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=25.64 E-value=56 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
-..+++.|..|+-|+.|| -+.|..|+|+.+|.+++...+.-...-+.-.
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~ 301 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEI 301 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667799999998775 5679999999999999988777665555443
No 15
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=25.18 E-value=62 Score=29.94 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCChhh-----------hhhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.-|..-..+++.|..|+.|+.| |-+.|..|+|+.+|.+++...+.-...-+.-.+
T Consensus 203 l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L 269 (301)
T 1rtr_A 203 LESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDEL 269 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=22.20 E-value=77 Score=29.28 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhh---------hcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDK---------TFGIRTFTVRLGQKRVFWTCISLLEVAYTV 261 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr---------~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~ 261 (320)
+.-|..-...++.|..|+-|+.||. ..|-.|+|+.+|.+++-....-++.-+.-.
T Consensus 200 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~~~ 263 (291)
T 3npk_A 200 IYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQD 263 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444567778999999999875 368899999999999887666665555443
Done!