Query 020838
Match_columns 320
No_of_seqs 211 out of 464
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 08:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 32.4 31 0.0023 29.4 5.8 52 213-264 75-127 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 25.2 50 0.0036 27.8 5.8 52 212-263 71-123 (290)
3 d1rtra_ a.128.1.1 (A:) Farnesy 24.2 13 0.00096 31.8 1.6 38 213-250 208-256 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 22.3 19 0.0014 30.9 2.3 43 210-252 211-264 (299)
5 d2c9wa1 a.271.1.1 (A:149-198) 10.4 34 0.0025 22.4 0.5 19 145-164 22-41 (50)
6 d1v4ea_ a.128.1.1 (A:) Octopre 8.6 1.6E+02 0.012 24.3 4.5 49 213-262 64-112 (280)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 7.2 2.9E+02 0.021 22.1 5.5 24 241-264 85-108 (447)
8 d1uf2a_ e.28.1.2 (A:) RDV p3 { 7.2 73 0.0053 30.9 1.6 28 136-163 555-582 (967)
9 d2q80a1 a.128.1.1 (A:6-296) Ge 6.7 4.1E+02 0.03 21.5 6.4 55 207-262 44-98 (291)
10 d1wvia_ c.108.1.14 (A:) Putati 6.1 80 0.0058 25.0 1.1 25 220-244 202-228 (253)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=32.36 E-value=31 Score=29.36 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCChhhh-hhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGD-KTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGD-r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~il 264 (320)
+.-.+--|-.|++|...| .+.|..|+-.++|...+...+-.++..++-.+.-
T Consensus 75 llH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~ 127 (299)
T d1rqja_ 75 CIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSD 127 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHHh
Confidence 444555578899998874 7999999999999999988888887777766653
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.16 E-value=50 Score=27.83 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCChhhh-hhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 020838 212 SFFSVVIALFKDVPDLEGD-KTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263 (320)
Q Consensus 212 ~~f~~~i~i~KDi~DieGD-r~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~i 263 (320)
=++-.+.-|-.||+|+++| ...|..|.-.++|...+...+-.++..++..+.
T Consensus 71 EllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~~ 123 (290)
T d1rtra_ 71 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELIS 123 (290)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHHHH
Confidence 3445556688999998775 588999999999999998888777766665543
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.21 E-value=13 Score=31.78 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCChhhh-----------hhcCCccchhhhChHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGD-----------KTFGIRTFTVRLGQKRVFWT 250 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlpv~lG~k~a~~l 250 (320)
-+..+..|..|+.|+.|| -+.|..|+|+.+|.+.+...
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~~ 256 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDK 256 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHHH
Confidence 355667799999998765 45788999999998876543
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=22.33 E-value=19 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCChhh-----------hhhcCCccchhhhChHHHHHHHH
Q 020838 210 FMSFFSVVIALFKDVPDLEG-----------DKTFGIRTFTVRLGQKRVFWTCI 252 (320)
Q Consensus 210 f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tlpv~lG~k~a~~la~ 252 (320)
+..-+.+++.|..|+-|+.| |-+.|..|+|+.+|.+++-....
T Consensus 211 ~g~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 33346677779999999875 56678899999999988765544
No 5
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.45 E-value=34 Score=22.35 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=12.3
Q ss_pred Hhhhhhhhhccccc-cccchh
Q 020838 145 GLNQLSDIEIDKLP-LLRWKR 164 (320)
Q Consensus 145 giNd~fD~EIDkiP-~~RlKr 164 (320)
.||+-.| .||++| |.++|.
T Consensus 22 ~In~~~d-~i~~LPLP~~Lk~ 41 (50)
T d2c9wa1 22 TINKCTG-AIWGLPLPTRLKD 41 (50)
T ss_dssp HHHHHCS-CGGGSSSCHHHHH
T ss_pred HHHhccC-CcccCCCCHHHHH
Confidence 3677777 889866 444554
No 6
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=8.56 E-value=1.6e+02 Score=24.33 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 213 FFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 213 ~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
++-.+.-|-.||.| +.|...|..|.=.++|...+...+-.++..++-.+
T Consensus 64 liH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~l 112 (280)
T d1v4ea_ 64 LVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTV 112 (280)
T ss_dssp HHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhcc
Confidence 34455557899988 67889999999999999999888877776665544
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.24 E-value=2.9e+02 Score=22.14 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=17.3
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHH
Q 020838 241 RLGQKRVFWTCISLLEVAYTVAIL 264 (320)
Q Consensus 241 ~lG~k~a~~la~~ll~~~y~~~il 264 (320)
|+|+|++..++..+..+..+....
T Consensus 85 r~g~r~~~~~~~~~~~~~~~~~~~ 108 (447)
T d1pw4a_ 85 RSNPRVFLPAGLILAAAVMLFMGF 108 (447)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhhccc
Confidence 789999998887766665554433
No 8
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Probab=7.22 E-value=73 Score=30.92 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=20.6
Q ss_pred HHHHHHHHhHhhhhhhhhccccccccch
Q 020838 136 ALMMNIYIVGLNQLSDIEIDKLPLLRWK 163 (320)
Q Consensus 136 ~l~~n~~i~giNd~fD~EIDkiP~~RlK 163 (320)
.+++|.|+|++|-|+|-+--+=-|+-||
T Consensus 555 avLaNtYaNAvNvYCDsvYra~iPlnWk 582 (967)
T d1uf2a_ 555 AILANTYANAVNVYCDSVYRADIPIEWK 582 (967)
T ss_dssp HHHTTHHHHHSBSSCCCCCCTTSCGGGS
T ss_pred HHHHHhhhhhhhhhccccccCCCcccee
Confidence 3457999999999999987772233444
No 9
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.73 E-value=4.1e+02 Score=21.55 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhcCCccchhhhChHHHHHHHHHHHHHHHHHH
Q 020838 207 ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVA 262 (320)
Q Consensus 207 lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlpv~lG~k~a~~la~~ll~~~y~~~ 262 (320)
+.+.+=+.-.+.-|-.|+.|- .|.+.|..|+=.++|...+...+-.++..++-.+
T Consensus 44 ~a~aiEllH~asLihDDi~D~-~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~~l 98 (291)
T d2q80a1 44 IIEVTEMLHNASLLIDDIEDN-SKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKV 98 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccC-cccccCCCccccccchhhhhhHHHHHHHHHHHhh
Confidence 333334455555677888753 4677899999999999998888887777765443
No 10
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=6.08 E-value=80 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHhc-CC-ChhhhhhcCCccchhhhCh
Q 020838 220 LFKD-VP-DLEGDKTFGIRTFTVRLGQ 244 (320)
Q Consensus 220 i~KD-i~-DieGDr~~Gi~Tlpv~lG~ 244 (320)
.+-| +. ||+|-++.|++|+-|.-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 4446 66 9999999999999998774
Done!