BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020839
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
 pdb|2Z5J|A Chain A, Free Transportin 1
 pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
 pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
 pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
 pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
          Length = 890

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 77  FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD 136
            A +L   + +  +   + + +   AIG LA +VG+  N  E ++  + P+ Q      D
Sbjct: 519 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 578

Query: 137 SSK-IASLLECLAVI 150
             K +  LLECL+ +
Sbjct: 579 EDKDLFPLLECLSSV 593


>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
 pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
          Length = 865

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 77  FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD 136
            A +L   + +  +   + + +   AIG LA +VG+  N  E ++  + P+ Q      D
Sbjct: 494 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 553

Query: 137 SSK-IASLLECLAVI 150
             K +  LLECL+ +
Sbjct: 554 EDKDLFPLLECLSSV 568


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 30  VQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVE--KKFATLLHQCLSS 87
           V    DT L   +  L ++   + ++   +   AF    +    E     A +L   + +
Sbjct: 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491

Query: 88  IKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSK-IASLLEC 146
             +   + + +   AIG LA +VG+  N  E ++  + P+ Q      D  K +  LLEC
Sbjct: 492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLEC 551

Query: 147 LAVI 150
           L+ +
Sbjct: 552 LSSV 555


>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
           Transport Complex
          Length = 890

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 77  FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFD 136
            A +L   + +  +   + + +   AIG LA +VG+  N  E ++    P+ Q      D
Sbjct: 519 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQXLXPPLIQKWNXLKD 578

Query: 137 SSK-IASLLECLAVI 150
             K +  LLECL+ +
Sbjct: 579 EDKDLFPLLECLSSV 593


>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
          Length = 939

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 34  KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSS 93
           KD ++D+    ++EK G++ + AL+++   F  T   ++    +++LL Q +        
Sbjct: 712 KDVVVDKKQSVIFEKAGNSTDSALAAV---FVPTGYDEYTSSAYSSLLGQIVQPWFYNQL 768

Query: 94  REIALASHAIGLLALTVG 111
           R      +A+    ++VG
Sbjct: 769 RTEEQLGYAVFAFPMSVG 786


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,677,693
Number of Sequences: 62578
Number of extensions: 274925
Number of successful extensions: 431
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 12
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)