BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020839
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1
PE=2 SV=1
Length = 450
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 28/313 (8%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL I A + +
Sbjct: 54 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASRM 113
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++F+ ++ TL +K+G S E A+ +L + +G G S E+L +++ P+
Sbjct: 114 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEVL-KTLGPVL 172
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T+Q + I SNV+
Sbjct: 173 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLQCLENIFTKSYLKEKDSNVIC 232
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C L KK + + +LL DD ++RIAAGE+L
Sbjct: 233 STPNTALHISSLLAWTLLLTI---CPLSEVKKKLEMHVHKLPSLLSSDDVNMRIAAGESL 289
Query: 241 ALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTS 300
AL+ E A+G S Y ++ L +R L+ + G K AK D
Sbjct: 290 ALLFEL---------ARGME--SDFFYEDMESLT----QMLRALATD-GNKHRAKVDKRK 333
Query: 301 QRNLFKDILEFLE 313
QR++F+DIL +E
Sbjct: 334 QRSVFRDILRAVE 346
>sp|O00458|IFRD1_HUMAN Interferon-related developmental regulator 1 OS=Homo sapiens
GN=IFRD1 PE=1 SV=4
Length = 451
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 30/314 (9%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL I A + +
Sbjct: 55 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKM 114
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++F+ ++ TL +K+G S E A+ +L + +G G S EIL +++ PI
Sbjct: 115 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEIL-KTLGPIL 173
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ + I + V+
Sbjct: 174 KKIICDGSASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVIC 233
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C ++ KK + +LL DD ++RIAAGE+L
Sbjct: 234 STPNTVLHISSLLAWTLLLTI---CPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESL 290
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 291 ALLFEL---------ARGIESDFFYEDMESLTQM-------LRALATD-GNKHRAKVDKR 333
Query: 300 SQRNLFKDILEFLE 313
QR++F+D+L +E
Sbjct: 334 KQRSVFRDVLRAVE 347
>sp|P19182|IFRD1_MOUSE Interferon-related developmental regulator 1 OS=Mus musculus
GN=Ifrd1 PE=2 SV=2
Length = 449
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 30/314 (9%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL + A ++ +
Sbjct: 53 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGLKNALSSKV 112
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++FV ++ TL +K+G S E A+ +L + +G G S EIL +++ PI
Sbjct: 113 LYEFVLERRMTLTDSIERCLKKGKSDEQRAAAAVASVLCIQLGPGFESEEIL-KTLGPIL 171
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ I +NV
Sbjct: 172 KKIICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECFENIFTKSYLKEKDTNVTC 231
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C ++ KK + +LL DD ++RIAAGE+L
Sbjct: 232 STPNTVLHISSLLAWTLLLTI---CPINEVKKKLELHFHKLPSLLSCDDVNMRIAAGESL 288
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 289 ALLFEL---------ARGMESDFFYEDMDSLTQM-------LRALATD-GNKHRAKVDKR 331
Query: 300 SQRNLFKDILEFLE 313
QR++F+D+L +E
Sbjct: 332 KQRSVFRDVLRAVE 345
>sp|P20695|IFRD1_RAT Interferon-related developmental regulator 1 OS=Rattus norvegicus
GN=Ifrd1 PE=2 SV=1
Length = 449
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 30/314 (9%)
Query: 9 SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
S S S+ D V E Q + + L +D +K TR+ AL + A ++ +
Sbjct: 53 SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKV 112
Query: 69 QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
++FV ++ TL +K+G S A+ +L + +G G S EIL +++ PI
Sbjct: 113 LYEFVLERRMTLTDSIERCLKKGKSDGQRAAAALASVLCIQLGPGLESEEIL-KTLGPIL 171
Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
+ + +S A + C V F+ +D E T++ + I +NV
Sbjct: 172 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLECLEGIFTKSYLKEKDTNVPC 231
Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
+ P+ + + + AW+ LLT C + KK + +LL DD ++RIAAGE+L
Sbjct: 232 STPNTVLHISSLLAWTLLLTI---CPISEVKKKLELHFHKLPSLLSCDDVNMRIAAGESL 288
Query: 241 ALILETGSLEKFSSEAKG-SNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLT 299
AL+ E A+G +D E+ L + +R L+ + G K AK D
Sbjct: 289 ALLFEL---------ARGMESDFFYEDMDSLTQM-------LRALATD-GNKHRAKVDKR 331
Query: 300 SQRNLFKDILEFLE 313
QR++F+D+L +E
Sbjct: 332 KQRSVFRDVLRAVE 345
>sp|Q9LUR0|CNDH2_ARATH Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2
PE=2 SV=1
Length = 683
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 166 QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTL 224
+I W I + S RP+ PI + ++ W M GC+ ++ Q I Y+ L
Sbjct: 328 KIGWSITKDHMTSMFPLARPNGPISSELIEIWK-----MHGCASKDEQASQDIPYYEKL 381
>sp|Q12894|IFRD2_HUMAN Interferon-related developmental regulator 2 OS=Homo sapiens
GN=IFRD2 PE=1 SV=3
Length = 506
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 30/312 (9%)
Query: 10 SVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQ 69
S ++ ++ D + G +E EK L E +D L +K TR+ AL S+ A + L
Sbjct: 116 STTAEDSLGGDVVDEQGQQEDLEEK---LKEYVDCLTDKSAKTRQGALESLRLALASRLL 172
Query: 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQ 129
F+ ++ TL +K+G E ALA+ +GLL + +G G E+ S+ P+
Sbjct: 173 PDFLLERRLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELF-HSLQPLLV 231
Query: 130 ALKSGFDSSKIASLLEC---LAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPS 186
++ S +S A+ L C L + +V D ++ + + + G +T P
Sbjct: 232 SVLSDSTASP-AARLHCASALGLGCYVAAADIQDLVSCLACLESVFSRFYGLGGSSTSPV 290
Query: 187 API----ITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALAL 242
P + + LL T+ + S + + LL + ++RIAAGE +AL
Sbjct: 291 VPASLHGLLSAALQAWALLLTICPSTQISHILDRQLPRLPQLLSSESVNLRIAAGETIAL 350
Query: 243 ILETG-SLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQ 301
+ E LE EE+++ + ++ + + +R L+ ++ K AK D Q
Sbjct: 351 LFELARDLE--------------EEFVY-EDMEA-LCSVLRTLATDS-NKYRAKADRRRQ 393
Query: 302 RNLFKDILEFLE 313
R+ F+ +L +E
Sbjct: 394 RSTFRAVLHSVE 405
>sp|Q7ZXQ3|HERP2_XENLA Homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 2 protein OS=Xenopus laevis
GN=herpud2 PE=2 SV=1
Length = 398
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 152 FVGGNDPEETERTMQIMWQIVHPK-LGSNVVATRPSAPIITAMVSAWSFLLT 202
V NDP+E ER M Q VH G NVVA + + SAWSF+ T
Sbjct: 338 LVNNNDPQELERRMDDGLQEVHNNDAGVNVVARQ------GVLASAWSFITT 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,534,806
Number of Sequences: 539616
Number of extensions: 4168002
Number of successful extensions: 10456
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 10439
Number of HSP's gapped (non-prelim): 32
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)