Query 020839
Match_columns 320
No_of_seqs 111 out of 218
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05004 IFRD: Interferon-rela 100.0 8.8E-70 1.9E-74 516.6 30.5 293 4-313 1-309 (309)
2 KOG2842 Interferon-related pro 100.0 8E-44 1.7E-48 336.7 25.6 291 11-318 35-330 (427)
3 PF12348 CLASP_N: CLASP N term 97.7 0.004 8.7E-08 56.1 17.8 186 47-248 18-209 (228)
4 KOG2842 Interferon-related pro 97.5 0.0069 1.5E-07 59.1 17.1 262 3-310 33-325 (427)
5 PRK09687 putative lyase; Provi 97.4 0.01 2.3E-07 56.1 16.3 96 37-151 24-119 (280)
6 PF13646 HEAT_2: HEAT repeats; 95.9 0.12 2.5E-06 39.0 10.0 87 124-241 1-88 (88)
7 PF12719 Cnd3: Nuclear condens 95.9 0.28 6.2E-06 46.5 14.5 103 134-249 38-147 (298)
8 KOG2171 Karyopherin (importin) 95.8 0.48 1E-05 52.0 17.4 160 76-246 841-1002(1075)
9 cd00020 ARM Armadillo/beta-cat 95.5 0.096 2.1E-06 41.2 8.2 110 123-245 8-120 (120)
10 PF10508 Proteasom_PSMB: Prote 95.4 1.8 3.8E-05 44.3 19.1 191 42-248 165-369 (503)
11 KOG1820 Microtubule-associated 95.1 1.5 3.3E-05 47.3 17.9 180 43-246 260-444 (815)
12 PF02985 HEAT: HEAT repeat; I 94.7 0.063 1.4E-06 33.4 4.0 30 217-246 1-30 (31)
13 KOG1248 Uncharacterized conser 94.5 4.8 0.0001 44.7 19.9 177 53-246 717-899 (1176)
14 KOG2171 Karyopherin (importin) 94.5 4.2 9.1E-05 45.0 19.4 163 76-246 115-279 (1075)
15 PF01602 Adaptin_N: Adaptin N 94.4 2.9 6.3E-05 42.1 17.3 179 37-246 115-297 (526)
16 PLN03200 cellulose synthase-in 94.3 2.1 4.5E-05 50.6 17.6 195 36-243 13-216 (2102)
17 PF01602 Adaptin_N: Adaptin N 94.0 4.3 9.4E-05 40.8 17.7 99 80-200 80-179 (526)
18 PRK09687 putative lyase; Provi 93.9 4.1 8.8E-05 38.5 16.3 87 123-241 160-246 (280)
19 PF08064 UME: UME (NUC010) dom 93.9 0.53 1.1E-05 38.0 8.8 87 125-224 14-104 (107)
20 KOG0211 Protein phosphatase 2A 93.7 2.3 5E-05 45.7 15.5 177 45-246 487-665 (759)
21 PLN03200 cellulose synthase-in 93.7 4.3 9.3E-05 48.1 18.6 183 41-245 451-638 (2102)
22 PF05004 IFRD: Interferon-rela 93.3 6.2 0.00013 37.8 16.6 121 117-246 81-216 (309)
23 KOG1824 TATA-binding protein-i 93.1 4.5 9.7E-05 44.2 16.3 190 36-239 476-674 (1233)
24 PF05536 Neurochondrin: Neuroc 93.0 6.3 0.00014 40.9 17.2 194 35-245 4-213 (543)
25 PF13513 HEAT_EZ: HEAT-like re 93.0 0.19 4E-06 35.0 4.2 52 188-241 2-53 (55)
26 KOG1824 TATA-binding protein-i 92.8 12 0.00026 41.1 19.0 227 39-312 438-678 (1233)
27 PRK13800 putative oxidoreducta 92.8 4.7 0.0001 44.2 16.8 90 37-150 622-711 (897)
28 PRK13800 putative oxidoreducta 92.6 2.8 6E-05 46.0 14.6 89 124-243 777-865 (897)
29 PF13646 HEAT_2: HEAT repeats; 92.3 3.3 7.1E-05 30.9 10.7 86 39-148 2-88 (88)
30 PF05804 KAP: Kinesin-associat 91.9 10 0.00022 40.6 17.4 154 77-247 488-651 (708)
31 smart00802 UME Domain in UVSB 91.5 1.8 3.9E-05 35.1 8.9 82 126-220 15-100 (107)
32 PF13513 HEAT_EZ: HEAT-like re 91.2 0.42 9.1E-06 33.2 4.3 51 96-149 4-54 (55)
33 KOG1242 Protein containing ada 91.2 15 0.00032 38.2 17.0 155 78-249 294-448 (569)
34 PF12719 Cnd3: Nuclear condens 91.1 4.5 9.8E-05 38.3 12.7 105 79-200 26-141 (298)
35 KOG1248 Uncharacterized conser 90.3 35 0.00077 38.3 20.9 191 42-244 658-855 (1176)
36 PF10508 Proteasom_PSMB: Prote 89.9 25 0.00054 36.0 19.0 193 35-243 118-317 (503)
37 cd00020 ARM Armadillo/beta-cat 89.9 4.3 9.3E-05 31.5 9.7 72 80-154 8-80 (120)
38 PF12460 MMS19_C: RNAPII trans 88.7 18 0.00039 35.9 15.2 57 189-246 339-395 (415)
39 KOG2956 CLIP-associating prote 88.2 32 0.0007 35.0 17.8 190 36-248 286-480 (516)
40 KOG1242 Protein containing ada 86.4 36 0.00078 35.5 15.9 186 38-249 136-328 (569)
41 KOG2023 Nuclear transport rece 85.3 28 0.0006 37.1 14.4 170 37-225 129-304 (885)
42 PF12755 Vac14_Fab1_bd: Vacuol 84.9 7.8 0.00017 30.7 8.3 53 101-156 8-60 (97)
43 PF12755 Vac14_Fab1_bd: Vacuol 84.8 16 0.00034 29.0 10.1 81 53-137 3-83 (97)
44 PF04826 Arm_2: Armadillo-like 83.8 38 0.00082 31.6 17.6 90 40-137 58-149 (254)
45 KOG0166 Karyopherin (importin) 83.4 59 0.0013 33.6 15.9 188 38-244 68-265 (514)
46 KOG1240 Protein kinase contain 83.2 19 0.00042 40.5 12.8 114 124-248 424-540 (1431)
47 KOG2137 Protein kinase [Signal 83.2 36 0.00079 36.2 14.4 144 64-229 377-521 (700)
48 cd03569 VHS_Hrs_Vps27p VHS dom 83.0 14 0.00031 31.3 9.7 70 78-147 40-109 (142)
49 PF02985 HEAT: HEAT repeat; I 82.6 3.1 6.6E-05 25.6 4.1 28 123-151 1-28 (31)
50 PF01347 Vitellogenin_N: Lipop 82.2 14 0.00031 38.3 11.4 132 37-194 432-581 (618)
51 KOG2032 Uncharacterized conser 81.9 43 0.00094 34.3 13.9 117 37-159 255-378 (533)
52 TIGR02270 conserved hypothetic 81.7 33 0.00072 34.3 13.2 47 185-243 159-205 (410)
53 COG5096 Vesicle coat complex, 80.7 90 0.0019 33.8 16.9 136 83-249 22-160 (757)
54 KOG1241 Karyopherin (importin) 80.0 93 0.002 33.6 18.8 178 50-246 231-436 (859)
55 PF00514 Arm: Armadillo/beta-c 79.6 3.6 7.9E-05 26.7 3.9 28 216-243 12-39 (41)
56 PTZ00429 beta-adaptin; Provisi 78.8 1E+02 0.0022 33.4 18.0 184 38-246 142-327 (746)
57 PTZ00429 beta-adaptin; Provisi 77.7 1.1E+02 0.0024 33.2 19.9 172 39-246 35-206 (746)
58 KOG0212 Uncharacterized conser 76.5 81 0.0018 33.0 14.0 199 42-248 10-241 (675)
59 PF13251 DUF4042: Domain of un 76.1 28 0.00061 30.9 9.7 61 184-244 113-173 (182)
60 COG5181 HSH155 U2 snRNP splice 75.6 39 0.00085 35.8 11.6 132 96-249 334-469 (975)
61 PF12530 DUF3730: Protein of u 75.6 65 0.0014 29.4 18.8 132 93-245 97-232 (234)
62 KOG0213 Splicing factor 3b, su 75.5 54 0.0012 35.5 12.8 123 95-234 528-654 (1172)
63 smart00638 LPD_N Lipoprotein N 75.4 63 0.0014 33.3 13.5 132 37-195 394-538 (574)
64 KOG1943 Beta-tubulin folding c 75.4 1.5E+02 0.0032 33.4 17.2 170 37-222 677-858 (1133)
65 KOG1059 Vesicle coat complex A 74.9 1.3E+02 0.0028 32.5 17.7 202 39-244 339-576 (877)
66 cd03561 VHS VHS domain family; 73.1 52 0.0011 27.2 11.9 72 79-151 37-111 (133)
67 KOG0166 Karyopherin (importin) 72.4 42 0.0009 34.6 11.0 107 123-242 195-305 (514)
68 PF08506 Cse1: Cse1; InterPro 70.4 44 0.00096 32.9 10.5 132 96-240 228-370 (370)
69 smart00288 VHS Domain present 69.8 59 0.0013 27.0 9.8 69 79-147 37-106 (133)
70 KOG1060 Vesicle coat complex A 69.7 1.7E+02 0.0037 32.0 14.9 173 37-246 287-459 (968)
71 KOG2023 Nuclear transport rece 69.4 1.7E+02 0.0036 31.5 16.8 126 102-248 378-508 (885)
72 COG5215 KAP95 Karyopherin (imp 68.7 1.6E+02 0.0035 31.1 17.4 158 76-246 91-251 (858)
73 PF12348 CLASP_N: CLASP N term 68.7 84 0.0018 27.8 16.2 119 138-287 68-188 (228)
74 PF10193 Telomere_reg-2: Telom 68.3 45 0.00098 27.1 8.5 104 38-150 5-113 (114)
75 KOG0168 Putative ubiquitin fus 67.9 2E+02 0.0043 31.8 17.9 154 76-246 208-365 (1051)
76 PF13251 DUF4042: Domain of un 65.7 98 0.0021 27.5 11.7 108 45-153 49-175 (182)
77 PF00790 VHS: VHS domain; Int 64.8 82 0.0018 26.2 11.3 106 37-148 5-114 (140)
78 smart00638 LPD_N Lipoprotein N 63.6 1.8E+02 0.004 29.9 14.4 100 117-239 437-539 (574)
79 KOG2956 CLIP-associating prote 63.3 1.2E+02 0.0027 31.0 11.9 49 41-89 334-385 (516)
80 KOG2259 Uncharacterized conser 62.7 2E+02 0.0044 30.8 13.6 92 138-246 173-264 (823)
81 PF05536 Neurochondrin: Neuroc 61.9 2E+02 0.0044 29.8 17.3 152 79-244 5-168 (543)
82 KOG4224 Armadillo repeat prote 61.8 73 0.0016 31.8 9.8 64 83-150 212-278 (550)
83 KOG1240 Protein kinase contain 61.1 3E+02 0.0064 31.7 15.1 111 37-153 426-538 (1431)
84 smart00185 ARM Armadillo/beta- 61.0 14 0.00031 23.1 3.5 28 216-243 12-39 (41)
85 KOG2062 26S proteasome regulat 60.8 59 0.0013 35.1 9.5 97 122-243 519-616 (929)
86 PF01347 Vitellogenin_N: Lipop 60.7 50 0.0011 34.2 9.3 96 117-237 481-581 (618)
87 KOG1820 Microtubule-associated 59.9 95 0.0021 34.0 11.2 106 37-155 337-446 (815)
88 KOG1059 Vesicle coat complex A 59.4 2.6E+02 0.0057 30.3 18.8 190 37-248 145-365 (877)
89 KOG0211 Protein phosphatase 2A 57.8 1.5E+02 0.0034 32.1 12.3 124 98-244 498-624 (759)
90 PF12074 DUF3554: Domain of un 56.5 1.9E+02 0.004 27.7 16.2 79 54-134 37-115 (339)
91 KOG1241 Karyopherin (importin) 56.0 3E+02 0.0066 30.0 19.4 248 32-315 445-716 (859)
92 cd03567 VHS_GGA VHS domain fam 55.9 1.3E+02 0.0027 25.5 9.8 66 80-145 39-109 (139)
93 PF08389 Xpo1: Exportin 1-like 55.5 1E+02 0.0022 24.9 8.6 68 162-240 81-148 (148)
94 KOG4224 Armadillo repeat prote 54.2 2.1E+02 0.0045 28.8 11.4 163 79-246 251-447 (550)
95 KOG0213 Splicing factor 3b, su 53.3 3.4E+02 0.0074 29.8 18.4 188 36-246 716-910 (1172)
96 KOG2032 Uncharacterized conser 52.8 96 0.0021 31.9 9.2 94 138-243 273-369 (533)
97 COG5181 HSH155 U2 snRNP splice 52.7 2.7E+02 0.0059 29.8 12.5 98 135-246 616-715 (975)
98 PF12397 U3snoRNP10: U3 small 50.7 1.3E+02 0.0028 24.1 8.6 70 76-151 3-73 (121)
99 KOG1061 Vesicle coat complex A 49.8 1.3E+02 0.0029 32.3 10.1 165 75-248 117-311 (734)
100 KOG2025 Chromosome condensatio 49.6 2.4E+02 0.0051 30.6 11.7 137 46-198 52-189 (892)
101 PF08216 CTNNBL: Catenin-beta- 49.5 12 0.00025 30.6 1.8 44 190-236 63-107 (108)
102 PF07571 DUF1546: Protein of u 48.8 75 0.0016 24.8 6.4 53 96-150 23-76 (92)
103 cd03568 VHS_STAM VHS domain fa 48.3 88 0.0019 26.5 7.2 67 82-148 40-106 (144)
104 PF04826 Arm_2: Armadillo-like 47.3 2.4E+02 0.0052 26.2 13.7 140 83-241 16-159 (254)
105 PF12830 Nipped-B_C: Sister ch 45.5 1E+02 0.0022 27.0 7.5 38 212-249 4-41 (187)
106 KOG1967 DNA repair/transcripti 45.4 4.8E+02 0.01 29.1 14.0 161 77-247 865-1026(1030)
107 TIGR02270 conserved hypothetic 44.0 2.6E+02 0.0057 27.9 10.9 46 185-243 129-174 (410)
108 PF10363 DUF2435: Protein of u 43.7 1.6E+02 0.0034 23.1 8.4 71 36-111 3-75 (92)
109 KOG2274 Predicted importin 9 [ 43.3 4.4E+02 0.0095 29.3 12.7 130 116-248 543-692 (1005)
110 PF11698 V-ATPase_H_C: V-ATPas 42.6 81 0.0018 26.1 5.9 56 185-243 56-113 (119)
111 PF08499 PDEase_I_N: 3'5'-cycl 41.8 14 0.00031 26.8 1.1 24 295-318 34-57 (59)
112 PF04510 DUF577: Family of unk 40.6 2.4E+02 0.0052 25.0 8.8 73 60-132 65-140 (174)
113 COG5330 Uncharacterized protei 40.5 1.2E+02 0.0026 29.9 7.6 110 82-197 10-140 (364)
114 PF12231 Rif1_N: Rap1-interact 40.4 3.6E+02 0.0079 26.3 14.7 184 51-248 8-204 (372)
115 KOG4653 Uncharacterized conser 40.0 5.6E+02 0.012 28.4 18.0 196 36-246 727-965 (982)
116 PF10274 ParcG: Parkin co-regu 39.3 2.8E+02 0.0061 24.7 10.2 77 32-109 34-110 (183)
117 COG5096 Vesicle coat complex, 37.9 5.7E+02 0.012 27.9 13.8 84 96-200 109-193 (757)
118 KOG0915 Uncharacterized conser 36.2 2.6E+02 0.0057 32.8 10.2 112 34-148 1037-1156(1702)
119 PF06012 DUF908: Domain of Unk 35.2 1.2E+02 0.0027 29.1 6.9 55 187-246 2-56 (329)
120 COG5215 KAP95 Karyopherin (imp 35.0 5.9E+02 0.013 27.2 18.4 212 69-314 488-715 (858)
121 KOG4653 Uncharacterized conser 35.0 6.5E+02 0.014 28.0 12.4 78 73-152 841-918 (982)
122 KOG0168 Putative ubiquitin fus 34.8 1.5E+02 0.0032 32.7 7.7 77 119-207 552-634 (1051)
123 KOG4413 26S proteasome regulat 33.9 4.8E+02 0.01 25.9 11.5 118 82-203 307-440 (524)
124 KOG0414 Chromosome condensatio 33.4 8E+02 0.017 28.2 18.1 155 78-246 269-429 (1251)
125 PF09268 Clathrin-link: Clathr 32.1 26 0.00056 20.8 1.0 21 216-236 3-23 (24)
126 KOG2137 Protein kinase [Signal 30.7 7.1E+02 0.015 26.9 13.7 57 185-245 401-458 (700)
127 COG5064 SRP1 Karyopherin (impo 30.1 4.9E+02 0.011 26.0 9.8 185 37-240 158-351 (526)
128 COG1698 Uncharacterized protei 29.7 2.8E+02 0.0061 21.9 7.1 36 114-149 9-45 (93)
129 PF03378 CAS_CSE1: CAS/CSE pro 29.2 6.1E+02 0.013 25.6 12.2 146 70-227 17-185 (435)
130 KOG0414 Chromosome condensatio 28.7 2.3E+02 0.0049 32.3 8.0 109 117-243 914-1025(1251)
131 PF11701 UNC45-central: Myosin 27.4 2.7E+02 0.0059 23.6 7.0 56 90-148 98-155 (157)
132 COG1413 FOG: HEAT repeat [Ener 27.3 5.2E+02 0.011 24.2 16.2 31 216-246 180-210 (335)
133 KOG1060 Vesicle coat complex A 27.0 5E+02 0.011 28.6 9.9 25 215-239 286-310 (968)
134 PF06685 DUF1186: Protein of u 27.0 2.4E+02 0.0052 26.3 7.0 45 125-172 114-159 (249)
135 PF14664 RICTOR_N: Rapamycin-i 27.0 6.2E+02 0.013 24.9 12.8 183 47-249 79-270 (371)
136 KOG4535 HEAT and armadillo rep 27.0 5.8E+02 0.013 26.6 10.0 60 185-244 119-178 (728)
137 KOG4413 26S proteasome regulat 26.7 2.3E+02 0.0049 28.1 6.9 57 185-242 94-154 (524)
138 KOG2200 Tumour suppressor prot 26.3 3.5E+02 0.0076 28.6 8.5 106 45-155 337-464 (674)
139 KOG3046 Transcription factor, 23.6 2E+02 0.0043 24.6 5.2 43 274-318 43-86 (147)
140 PF04388 Hamartin: Hamartin pr 23.6 4.6E+02 0.01 28.0 9.2 82 48-132 80-162 (668)
141 PRK04330 hypothetical protein; 22.8 2.1E+02 0.0044 22.5 4.8 35 115-149 6-41 (88)
142 PF11865 DUF3385: Domain of un 22.5 4.9E+02 0.011 22.2 8.4 135 76-233 7-145 (160)
143 PF12717 Cnd1: non-SMC mitotic 22.0 5.1E+02 0.011 22.2 15.9 138 137-313 2-139 (178)
144 KOG1851 Uncharacterized conser 22.0 1.3E+03 0.028 27.6 12.4 54 81-134 1238-1294(1710)
145 PF11865 DUF3385: Domain of un 21.0 1.3E+02 0.0027 25.9 3.7 40 117-159 5-44 (160)
146 KOG1077 Vesicle coat complex A 20.2 4.1E+02 0.0089 28.9 7.7 76 64-147 92-172 (938)
No 1
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=100.00 E-value=8.8e-70 Score=516.62 Aligned_cols=293 Identities=40% Similarity=0.556 Sum_probs=249.8
Q ss_pred CCCCCC-cccccc--cccccccCCCC-------CcccccchhhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHh
Q 020839 4 SDDDNS-SVSSTS--TMRSDRMSVSG-------TEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFV 73 (320)
Q Consensus 4 sddd~~-~~~S~~--t~~sd~~~~~~-------~~~~~~~~~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v 73 (320)
||||++ ++.|+. +..++..+..+ ++..+.+.+++|+++||.+++||+++|+++|++|+++|+++|+++|+
T Consensus 1 SDdd~~~~~~S~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v 80 (309)
T PF05004_consen 1 SDDDSSSDTASHTSSDSSSSTSSEEDDGSEEADEESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFV 80 (309)
T ss_pred CccccccCccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 677774 666664 22222222211 22233444568999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHH
Q 020839 74 EKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITF 152 (320)
Q Consensus 74 ~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f 152 (320)
.+++.||++.|++++|||+++|+.||+++++|+|+|+|++++++++|+.+.|+|+++++|++.+ ..|++|+.|||+++|
T Consensus 81 ~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 81 EDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999765 788999999999999
Q ss_pred HcCCCHHHHH---HHHHHHHHhhcCC-CCCc-cccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcC
Q 020839 153 VGGNDPEETE---RTMQIMWQIVHPK-LGSN-VVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK 227 (320)
Q Consensus 153 ~~~~~~~~~~---~~m~~l~~i~~~~-~g~~-~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s 227 (320)
+||.++++++ ++|+.+|.....+ +|.. +...++++.|++|||++|+||+|++|++++. +.++.++|+|++||+|
T Consensus 161 v~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 161 VGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDS 239 (309)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcC
Confidence 9999999999 4555455544444 4552 2334588999999999999999999999887 8899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHH
Q 020839 228 DDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKD 307 (320)
Q Consensus 228 ~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K~~sKkdrk~qRs~FRd 307 (320)
+|++|||||||+||||||++|. ++++ +.++++++|+++|++||++ |+|+++|||||+||++|||
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~~--~~~~-------------~~~~~~~~l~~~l~~La~d-S~K~~sKkdrk~qRs~Frd 303 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELARD--HEED-------------FLYEDMEELLEQLRELATD-SSKSRSKKDRKQQRSSFRD 303 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhhc--cccc-------------ccccCHHHHHHHHHHHHHh-ccCccchhHHHHHHHHHHH
Confidence 9999999999999999999994 2222 2244789999999999998 8999999999999999999
Q ss_pred HHHHHH
Q 020839 308 ILEFLE 313 (320)
Q Consensus 308 il~tvE 313 (320)
|++|||
T Consensus 304 il~~iE 309 (309)
T PF05004_consen 304 ILTTIE 309 (309)
T ss_pred HHHhhC
Confidence 999997
No 2
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=100.00 E-value=8e-44 Score=336.74 Aligned_cols=291 Identities=24% Similarity=0.270 Sum_probs=253.3
Q ss_pred ccccccccccccCCCCCcccccchhhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcC
Q 020839 11 VSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKR 90 (320)
Q Consensus 11 ~~S~~t~~sd~~~~~~~~~~~~~~~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikk 90 (320)
-+..+|..+|.+++.++.+.+.|.++++.+.++....|++++|+++|+.|+.+++.+++++|+.++++||.+.++++++|
T Consensus 35 ~S~~~~~~ed~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k 114 (427)
T KOG2842|consen 35 GSMDSTSAEDGSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNK 114 (427)
T ss_pred ccccccccccchhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcC
Confidence 34455666777777888788888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 020839 91 GSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEETERTMQIMW 169 (320)
Q Consensus 91 g~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~ 169 (320)
|+.+|+.+|..+++++|+|+|++..++++.....|.+..++.|.+.+ ..|..|+.|||++|++.+.+.++...++.++.
T Consensus 115 ~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~ 194 (427)
T KOG2842|consen 115 PKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLE 194 (427)
T ss_pred CccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876 89999999999999999999888887777655
Q ss_pred Hhh---cCCCCC-ccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 170 QIV---HPKLGS-NVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 170 ~i~---~~~~g~-~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.++ ..++|. .+........++.+|+.+|+++||..|..... .......|+++.+|.+.++++|+||||++|++||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti~~~~~~~-~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e 273 (427)
T KOG2842|consen 195 ESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLLLTICPEALSE-QLDAALAPKLPLLLSSERVNERIAAGETLALLFE 273 (427)
T ss_pred HHHHHhhcccCCCccccccchhHHHHHHHHHHHHHHHcCccchhh-HHHHHhccchHHHhccchhhhhhhhhhhHHHHHH
Confidence 543 322322 22233466789999999999999999887654 4445678999999999999999999999999999
Q ss_pred hcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHhcccc
Q 020839 246 TGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVSSYF 318 (320)
Q Consensus 246 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K~~sKkdrk~qRs~FRdil~tvE~g~~~ 318 (320)
++++-.++ +.+.++++|+..|+.|++| |+|+++|||||.||+.||+|+++||.+++|
T Consensus 274 ~~q~~~~~---------------f~~~d~e~l~~~lr~latd-ssKs~~kkdkR~qr~~fr~vl~~iee~~~p 330 (427)
T KOG2842|consen 274 LAQDSEFD---------------FIYPDMEQLLSTLRDLATD-SSKSRAKKDRRVQRSVFRDVLQTIEERDIP 330 (427)
T ss_pred HHhccccc---------------ccCCCHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 98852211 3345789999999999998 999999999999999999999999998887
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.71 E-value=0.004 Score=56.13 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=109.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHhhh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHh
Q 020839 47 EKRGSTREKALSSIIEAFNNTLQHQFVEK---KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEES 123 (320)
Q Consensus 47 eKrss~Re~~L~~l~~~l~~~~~~~~v~~---~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~ 123 (320)
+..=+.|.++|..|..++..+...++... ..-+++..+.+.++--+..=...|+.++..++..+|.. -+...+.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHHHHHH
Confidence 33445699999999999988832222222 22344566666665322333467888999999999964 56678888
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.|.|.+.+.++.. ..+.+|..||-.++-.+.. ...+ ...++..... ..++.+...++..-..++..
T Consensus 96 l~~Ll~~~~~~~~-~i~~~a~~~L~~i~~~~~~-~~~~--~~~~l~~~~~----------~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 96 LPPLLKKLGDSKK-FIREAANNALDAIIESCSY-SPKI--LLEILSQGLK----------SKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHGGG---H-HHHHHHHHHHHHHHTTS-H---HH--HHHHHHHHTT-----------S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccccH-HHHHHHHHHHHHHHHHCCc-HHHH--HHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHH
Confidence 9999888888643 4555666666544433330 1111 1333443332 26677877787777777777
Q ss_pred CC--CCccch-hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 204 MD--GCSLDS-KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 204 l~--~~~~~~-~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.+ ...+.. ..+...++.+..+|...+.+||-+|=+++..+|....
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 66 222321 2356788999999999999999999999999998844
No 4
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=97.52 E-value=0.0069 Score=59.06 Aligned_cols=262 Identities=9% Similarity=-0.002 Sum_probs=144.2
Q ss_pred CCCCCCCcccccccccccccCCCCCcccccch-hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHH
Q 020839 3 DSDDDNSSVSSTSTMRSDRMSVSGTEEVQLEK-DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLL 81 (320)
Q Consensus 3 ~sddd~~~~~S~~t~~sd~~~~~~~~~~~~~~-~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~ 81 (320)
||+++.+++.+. +.+-+.+....++....- +++.+......++|....|--.|.-..+.|-+.++.+++.-.-.++.
T Consensus 33 ~s~S~~~~~~ed--~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k 110 (427)
T KOG2842|consen 33 DSGSMDSTSAED--GSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEK 110 (427)
T ss_pred cccccccccccc--chhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Confidence 344444433333 444444433333333222 23333344467888888899999999999999999988876555555
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC-------------------hHHHHHHhHHHHHHHhhcCCChHHHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGEN-------------------SREILEESVAPISQALKSGFDSSKIAS 142 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~-------------------~~~i~~~~~~~L~~~i~d~s~s~~r~~ 142 (320)
........++...++.+.+.++-+...|.|...- .+.+......+-..+.. .+...--.
T Consensus 111 ~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~--~d~~e~~~ 188 (427)
T KOG2842|consen 111 CLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAE--ADIIELGS 188 (427)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHh--hhHHHHHH
Confidence 5555555555566777776666666555543110 01111111111111111 11111111
Q ss_pred HHHHH---HHHHHHcCCC--------HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccch
Q 020839 143 LLECL---AVITFVGGND--------PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDS 211 (320)
Q Consensus 143 ~i~aL---a~~~f~~~~~--------~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~ 211 (320)
++.|+ ..-+++..++ -+.....-...|..+-. ++. .+....+-++ .
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lt-----i~~-~~~~~~~~~~---------~-------- 245 (427)
T KOG2842|consen 189 FLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLLLT-----ICP-EALSEQLDAA---------L-------- 245 (427)
T ss_pred HHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHHHH-----cCc-cchhhHHHHH---------h--------
Confidence 22222 1111111111 11111111223443211 110 0111222222 1
Q ss_pred hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCC
Q 020839 212 KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGK 291 (320)
Q Consensus 212 ~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K 291 (320)
-.-+|.|..+.+.+.+.++.++++.|+.+-+-++....-.+ .+..-.+++.|...+++ +.+
T Consensus 246 ---~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d---------------~e~l~~~lr~latdssK-s~~ 306 (427)
T KOG2842|consen 246 ---APKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPD---------------MEQLLSTLRDLATDSSK-SRA 306 (427)
T ss_pred ---ccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCC---------------HHHHHHHHHHHHHhhhh-hhH
Confidence 13458899999999999999999999999998885333222 11246789999999999 899
Q ss_pred CcchhhhHHHHHHHHHHHH
Q 020839 292 GSAKKDLTSQRNLFKDILE 310 (320)
Q Consensus 292 ~~sKkdrk~qRs~FRdil~ 310 (320)
++.||++|.|+..||+++.
T Consensus 307 kkdkR~qr~~fr~vl~~ie 325 (427)
T KOG2842|consen 307 KKDRRVQRSVFRDVLQTIE 325 (427)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999885
No 5
>PRK09687 putative lyase; Provisional
Probab=97.37 E-value=0.01 Score=56.05 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=64.2
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
..+..++.|.++....|..+...|.. . . -......+.+.++..++..+..|+.+++-+ |...
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~----~------~--~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l----g~~~-- 85 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQL----R------G--GQDVFRLAIELCSSKNPIERDIGADILSQL----GMAK-- 85 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHh----c------C--cchHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCc--
Confidence 45556667777777778887754432 1 1 134445555656666788888899888874 4211
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVIT 151 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~ 151 (320)
..-....|.|...+...+++.+|.+++.+||-++
T Consensus 86 -~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 86 -RCQDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred -cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 1134577888888777777899999999998753
No 6
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.95 E-value=0.12 Score=39.02 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.|.|.+.+....++..|..++.+|+ --.++ +....+...+.. +++.|..+|+.+.+-+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~-----~~~~~----~~~~~L~~~l~d----------~~~~vr~~a~~aL~~i--- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG-----ELGDP----EAIPALIELLKD----------EDPMVRRAAARALGRI--- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH-----CCTHH----HHHHHHHHHHTS----------SSHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCH----hHHHHHHHHHcC----------CCHHHHHHHHHHHHHh---
Confidence 3678888877788889999999998 11122 345555555522 6789999999988854
Q ss_pred CCCCccchhhHHhhHHHHHhhhcCC-CHHHHHHHHHHHH
Q 020839 204 MDGCSLDSKKWQQSISYFSTLLDKD-DRSIRIAAGEALA 241 (320)
Q Consensus 204 l~~~~~~~~~~~~~l~~l~~lL~s~-d~~VRiAAGEaiA 241 (320)
.. .+.++.|..+|.++ +..||-+|-++||
T Consensus 59 ------~~---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GD---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HH---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CC---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22 47889999999876 6778999999986
No 7
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.87 E-value=0.28 Score=46.46 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchh-
Q 020839 134 GFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSK- 212 (320)
Q Consensus 134 ~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~- 212 (320)
..++..|..++.|||+++.+.- +-..+.+..|+..+.. ++..|...||++-.=++..-+...+...
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~----------~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQK----------DDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3455899999999999999964 4556677778887733 5678888888887766555333222211
Q ss_pred ------hHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 213 ------KWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 213 ------~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.....+..|...|++.+.++|.+|+|.+|=++=.++.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1246778899999999999999999999987666553
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.48 Score=52.01 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 020839 76 KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~ 155 (320)
.++.+...+..-++++++-|+.+|.-+++=++-..|+. +-..++.+.|.+.+.+.|. .+.+|.++++++|+++=+|+
T Consensus 841 ~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a--~~~~~~~~~p~~~~~~~d~-~pEVRqaAsYGiGvlaq~~g 917 (1075)
T KOG2171|consen 841 FFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEA--SAKYKERFLPLVLEALQDS-DPEVRQAAAYGMGVLAQFGG 917 (1075)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcC
Confidence 34677777888888777777889988888888777754 6788899999998888765 57889999999999999999
Q ss_pred CCHHH-HHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc-CCCHHHH
Q 020839 156 NDPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIR 233 (320)
Q Consensus 156 ~~~~~-~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~-s~d~~VR 233 (320)
.+-.. +.+....+..++.+.+.. ........-.|+.+.+.++-.-+..-- +.+.+|.+-..|= ++|.+--
T Consensus 918 ~~y~~v~~~~l~~L~~~iq~~~ar----~Ee~~~ateNa~gaiaki~~~~~~~i~----vdqvl~~~l~~LPl~~D~eEa 989 (1075)
T KOG2171|consen 918 EDYAPVCSEALPLLVQVLQPPLAR----TEENRRATENAIGAIAKILLFNPNRIP----VDQVLPAWLSWLPLKEDKEEA 989 (1075)
T ss_pred cchHHHHHHHHHHHHHHHcChhhh----hHHHhHHHHHHHHHHHHHHHhCCccCc----HHHHHHHHHHhCCCccchhhh
Confidence 87332 336666666766552111 012223334566777777666544322 2466666555555 4566666
Q ss_pred HHHHHHHHHHHHh
Q 020839 234 IAAGEALALILET 246 (320)
Q Consensus 234 iAAGEaiALl~E~ 246 (320)
.-.+.-|+-+||-
T Consensus 990 ~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 990 VPIYTFLSDLYES 1002 (1075)
T ss_pred hhHHHHHHHHHHh
Confidence 6667777777776
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.45 E-value=0.096 Score=41.15 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=70.8
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHH
Q 020839 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (320)
Q Consensus 123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~--~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lL 200 (320)
..|.|.+.+.++. ...|..++.+|+.++........... ..++.+..++.. +++.+...|+.+.+-|
T Consensus 8 ~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS----------EDEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC----------CCHHHHHHHHHHHHHH
Confidence 6778888887665 66777888888876654211111111 223334444432 4678888888888888
Q ss_pred HhcCCCCccchhhHH-hhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 201 LTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 201 lT~l~~~~~~~~~~~-~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
...-+.. ....++ ..++.|..+|+..+..+|-.|--++.-+.|
T Consensus 77 ~~~~~~~--~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 77 AAGPEDN--KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ccCcHHH--HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 6653321 112222 479999999999999999998888876643
No 10
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.39 E-value=1.8 Score=44.33 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=121.3
Q ss_pred HHHhccc-hhHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHH
Q 020839 42 LDALYEK-RGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI 119 (320)
Q Consensus 42 id~l~eK-rss~Re~~L~~l~~~l~~~~~-~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i 119 (320)
+..+..+ +...|-..++-++++..+..- ..++.+ .-+++.+++.++..+.-=+.-|+.++.-++.+-. + .+-+
T Consensus 165 L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~--sgll~~ll~eL~~dDiLvqlnalell~~La~~~~-g--~~yL 239 (503)
T PF10508_consen 165 LKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN--SGLLDLLLKELDSDDILVQLNALELLSELAETPH-G--LQYL 239 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh--ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh-H--HHHH
Confidence 3444444 666798888888877755442 233322 2389999999986444445666677777776322 1 2222
Q ss_pred HH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC---CHHHHH----HHHHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 120 LE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGN---DPEETE----RTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 120 ~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~---~~~~~~----~~m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
.+ .+.+.|...+.+..... |...+.-.|.+-|+|.- ++..+. ..++.+...+.+ .++....
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s----------~d~~~~~ 308 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES----------QDPTIRE 308 (503)
T ss_pred HhCCHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC----------CChhHHH
Confidence 22 25666777776553222 44455555665665431 333333 333444444433 6678889
Q ss_pred HHHHHHHHHHhcCCCCccc----hhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 192 AMVSAWSFLLTTMDGCSLD----SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~~~~----~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
+|+.+||.+.++....... ...++..+.++.....+...++|+.+=.+++.++....
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 9999999999988774433 23455678888888888999999999999999997644
No 11
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.06 E-value=1.5 Score=47.34 Aligned_cols=180 Identities=13% Similarity=0.184 Sum_probs=109.8
Q ss_pred HHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCCChHHHHH
Q 020839 43 DALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGENSREILE 121 (320)
Q Consensus 43 d~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~ 121 (320)
..+..|.=+.|.++|+.+...+.... ......+.+|+-..++..-|.. -.=..+|++++.++|--++.. ....-.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~--~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL--FRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--hHHHHH
Confidence 45777888899999999999998776 2334456677777777665544 233478999999999888864 333334
Q ss_pred HhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHH--HHHHHHH
Q 020839 122 ESVAPISQALKSGFDS--SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII--TAMVSAW 197 (320)
Q Consensus 122 ~~~~~L~~~i~d~s~s--~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~--~AAL~aW 197 (320)
.++|.|..-+.+.-.. ..-..|+.+.+- +. -....++++...... .+|.+. +..+..|
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~---~l~~~~~~I~e~lk~----------knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN-----ST---PLSKMSEAILEALKG----------KNPQIKGECLLLLDR 397 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cc---cHHHHHHHHHHHhcC----------CChhhHHHHHHHHHH
Confidence 4555555544443222 333345554443 11 122333433333321 333333 3344444
Q ss_pred HHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 198 SFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 198 ~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.|=-+ ++.....+.+..++|.+.......+.+||.||-|++|-++=+
T Consensus 398 ~~~~~--~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 398 KLRKL--GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhhc--CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 44333 322222245568889999998888999999999999998765
No 12
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.72 E-value=0.063 Score=33.35 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=26.2
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 217 SISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 217 ~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.+|.|..+|..++.+||.+|.++|+-+.|.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999988763
No 13
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=4.8 Score=44.72 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHh---hhcCCCCCh-HHHHHHhHHHHH
Q 020839 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLA---LTVGYGENS-REILEESVAPIS 128 (320)
Q Consensus 53 Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~---ltlg~~~~~-~~i~~~~~~~L~ 128 (320)
|-.+|..|++.+. ....+|+. ..+.+.++.. |--+..=+.-|.+++--++ ..+..|.+- .++.+++.+.+.
T Consensus 717 rl~~L~~L~~~~~-~e~~~~i~---k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Is 791 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLS-AEHCDLIP---KLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIIS 791 (1176)
T ss_pred HHHHHHHHHHhcc-HHHHHHHH---HHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 6677766666555 33445554 3344444433 4333222333444333222 333333333 556666666665
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCC
Q 020839 129 QALKSGFDSSKIASLLECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDG 206 (320)
Q Consensus 129 ~~i~d~s~s~~r~~~i~aLa~~~f~--~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~ 206 (320)
.-+. +...-.++.-|.+++.+.|= ..-+.+-+..+++.+...+.+ ..+.++-||+..-.-+.+.+|.
T Consensus 792 agl~-gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s----------~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 792 AGLV-GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLAS----------NSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred hhhc-ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHcCCH
Confidence 5422 11122222226666655543 333444455666666665643 6689999999999999999998
Q ss_pred CccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 207 CSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 207 ~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
..+. .+.++.||.+-.++..-...+|++.+--+=.+...
T Consensus 861 ~~l~-~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 861 ECLS-PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHh-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7775 66788999999988777899999987655555444
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=4.2 Score=44.97 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 020839 76 KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~ 155 (320)
....|+..+..|.+.+.+..+..|.+++.-+.-++|.. -.-...++.+.+.+.++|++.+ +|+.+++|++...-+..
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc--cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhc
Confidence 68899999999999998889999999999999888853 2235678999999999999999 99999999987766665
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCC--CHHHH
Q 020839 156 NDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKD--DRSIR 233 (320)
Q Consensus 156 ~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~--d~~VR 233 (320)
.+..+....-.++=.++.. .+..+. .++......++.+..=|+-..|.. ....+...+..-..+-.+. +..+|
T Consensus 192 ~~~~~~~~~~~llP~~l~v-l~~~i~--~~d~~~a~~~l~~l~El~e~~pk~--l~~~l~~ii~~~l~Ia~n~~l~~~~R 266 (1075)
T KOG2171|consen 192 NNKSEVDKFRDLLPSLLNV-LQEVIQ--DGDDDAAKSALEALIELLESEPKL--LRPHLSQIIQFSLEIAKNKELENSIR 266 (1075)
T ss_pred cchHHHHHHHHHhHHHHHH-hHhhhh--ccchHHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHhhcccccHHHH
Confidence 4444333333333333322 111111 133444455566555555554432 1122333333333333333 57888
Q ss_pred HHHHHHHHHHHHh
Q 020839 234 IAAGEALALILET 246 (320)
Q Consensus 234 iAAGEaiALl~E~ 246 (320)
..|=|.|--+-|-
T Consensus 267 ~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 267 HLALEFLVSLSEY 279 (1075)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777775
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.35 E-value=2.9 Score=42.06 Aligned_cols=179 Identities=15% Similarity=0.238 Sum_probs=103.0
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+......+..++.-.|..|+-.+.+++...+ +.+.. . +++.+.+.++-.++.=...|+.++.-+ ...+ .
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--~~~~~--~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~---~ 184 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--DLVED--E-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCND---D 184 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--CCHHG--G-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTH---H
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--HHHHH--H-HHHHHhhhccCCcchhHHHHHHHHHHH--ccCc---c
Confidence 55556667888888888888888888776533 22222 1 566677777543321122233322222 1110 1
Q ss_pred H--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 117 R--EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEET--ERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 117 ~--~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~--~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
. .+...+.+.|.+++ ...++-.++ ..+-++..++...+... ...++.+...+.+ .++.|+-.
T Consensus 185 ~~~~~~~~~~~~L~~~l-~~~~~~~q~---~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s----------~~~~V~~e 250 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLL-SDPDPWLQI---KILRLLRRYAPMEPEDADKNRIIEPLLNLLQS----------SSPSVVYE 250 (526)
T ss_dssp HHTTHHHHHHHHHHHHH-TCCSHHHHH---HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred hhhhhHHHHHHHhhhcc-cccchHHHH---HHHHHHHhcccCChhhhhHHHHHHHHHHHhhc----------cccHHHHH
Confidence 1 22333333444443 223443333 34445556666666666 5677777776653 44566655
Q ss_pred HHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
|+..-. .. ++.. ..++.+++.|..+|.+++.++|..|=++|..+...
T Consensus 251 ~~~~i~---~l-~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 251 AIRLII---KL-SPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp HHHHHH---HH-SSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred HHHHHH---Hh-hcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 555433 22 2221 25678899999999999999999999988877555
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.29 E-value=2.1 Score=50.60 Aligned_cols=195 Identities=15% Similarity=0.231 Sum_probs=116.2
Q ss_pred hhHHHHHHHhccch--hHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCC
Q 020839 36 TLLDEALDALYEKR--GSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (320)
Q Consensus 36 ~~l~~~id~l~eKr--ss~Re~~L~~l~~~l~~~~~-~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~ 112 (320)
.....+|+.|.-+. ...|+.++..|+.......- ..++.+ ....+..+...++.|+..-+..|+.++.-++..-.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~-~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~- 90 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGS-HSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED- 90 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHH-ccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH-
Confidence 47777888888773 45689999999887766643 233321 13356677777887875555676666666654311
Q ss_pred CCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHhhcCCCCCccccCCCCh
Q 020839 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE-----TERTMQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 113 ~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~-----~~~~m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
--..-+-....|+|..+++.+ +...|..|+.+|.-++..+.++... ..-.+..|+.++.+ |+ +.+.
T Consensus 91 -nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~--gs-----k~d~ 161 (2102)
T PLN03200 91 -LRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP--GN-----KQDK 161 (2102)
T ss_pred -HHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhC--Cc-----hhhH
Confidence 001223345778999999877 4667778888888877665322211 01234456666643 32 1333
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.+...|+.+-.-|.. .+..... ..+ ...+|.|+.+|++++..+|..|..+++-+
T Consensus 162 ~L~~~Av~AL~nLs~-~~en~~~-~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 162 VVEGLLTGALRNLCG-STDGFWS-ATLEAGGVDILVKLLSSGNSDAQANAASLLARL 216 (2102)
T ss_pred HHHHHHHHHHHHHhc-CccchHH-HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 443444333333332 2222111 112 25799999999999999999888876544
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.97 E-value=4.3 Score=40.79 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
.+..+.+.++..++.-+.+|+++++-++ ..++.+.+.|.+.+.+.++. +-+|.+|+.|+.=+.-...+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------~~~~~~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~--- 147 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--------TPEMAEPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPD--- 147 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHC---
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--------ccchhhHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHH---
Confidence 4455566666556777899999998876 25788999999999998664 46676777777655555333
Q ss_pred HHHH-HHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHH
Q 020839 160 ETER-TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (320)
Q Consensus 160 ~~~~-~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lL 200 (320)
.+.. ..+.+...+.. .++.|+.+|+.+..-+
T Consensus 148 ~~~~~~~~~l~~lL~d----------~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 LVEDELIPKLKQLLSD----------KDPSVVSAALSLLSEI 179 (526)
T ss_dssp CHHGGHHHHHHHHTTH----------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHH
Confidence 3332 35555555522 4577777777776666
No 18
>PRK09687 putative lyase; Provisional
Probab=93.95 E-value=4.1 Score=38.49 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=47.5
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHh
Q 020839 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (320)
Q Consensus 123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT 202 (320)
..|.|.+.+.|+ ++.+|..++.+||-+ +..++.-+..++..+ . | .++.|..+|+.+-+-
T Consensus 160 ai~~L~~~L~d~-~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L----~--D--------~~~~VR~~A~~aLg~--- 218 (280)
T PRK09687 160 AIPLLINLLKDP-NGDVRNWAAFALNSN---KYDNPDIREAFVAML----Q--D--------KNEEIRIEAIIGLAL--- 218 (280)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHhcC---CCCCHHHHHHHHHHh----c--C--------CChHHHHHHHHHHHc---
Confidence 556677777653 446888888888866 222333333333322 1 2 455666776665542
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 020839 203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (320)
Q Consensus 203 ~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiA 241 (320)
+.. ..++|.|...|++++ ||+.|-++++
T Consensus 219 ------~~~---~~av~~Li~~L~~~~--~~~~a~~ALg 246 (280)
T PRK09687 219 ------RKD---KRVLSVLIKELKKGT--VGDLIIEAAG 246 (280)
T ss_pred ------cCC---hhHHHHHHHHHcCCc--hHHHHHHHHH
Confidence 111 255677777777655 4555555443
No 19
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=93.86 E-value=0.53 Score=38.04 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=60.0
Q ss_pred HHHHHHhhc--CCC-hHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHH
Q 020839 125 APISQALKS--GFD-SSKIASLLECLAVITFVGGNDPEETE-RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (320)
Q Consensus 125 ~~L~~~i~d--~s~-s~~r~~~i~aLa~~~f~~~~~~~~~~-~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lL 200 (320)
..+...+.| +.. ...|..++.+++.+-=+++....... ..|-+|...+.. +.+...|+++|..+
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------------hhhHHHHHHHHHHH
Confidence 345556677 333 36677999999977668777666555 677777776532 37888899999999
Q ss_pred HhcCCCCccchhhHHhhHHHHHhh
Q 020839 201 LTTMDGCSLDSKKWQQSISYFSTL 224 (320)
Q Consensus 201 lT~l~~~~~~~~~~~~~l~~l~~l 224 (320)
+..+++.++. .++...+..+...
T Consensus 82 i~~L~~~~l~-~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 82 IKTLDEEDLG-PLLDQIFAILLPL 104 (107)
T ss_pred HHHCCHHHHH-HHHHHHHHHHHHh
Confidence 9999997765 4444444444433
No 20
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.66 E-value=2.3 Score=45.66 Aligned_cols=177 Identities=19% Similarity=0.134 Sum_probs=109.6
Q ss_pred hccch-hHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHhHHhhhcCCCCChHHHHHH
Q 020839 45 LYEKR-GSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYGENSREILEE 122 (320)
Q Consensus 45 l~eKr-ss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~-~lA~~~l~Ll~ltlg~~~~~~~i~~~ 122 (320)
+.+.+ -..|.+.+..+=..+...++..|.+. +.+++..-+-. ..-+. ..|++.+..++.+.|.. ---..
T Consensus 487 l~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l~~~~l~d----~v~~Ir~~aa~~l~~l~~~~G~~----w~~~~ 557 (759)
T KOG0211|consen 487 LAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAELLRTWLPD----HVYSIREAAARNLPALVETFGSE----WARLE 557 (759)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHHHHhhhhh----hHHHHHHHHHHHhHHHHHHhCcc----hhHHH
Confidence 34443 33488888877777777774444433 33332222100 01232 35678888889899942 11122
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHh
Q 020839 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (320)
Q Consensus 123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT 202 (320)
..|.+.....++ .--.|..++.|+..+.=++|... -.+.++..+++... | +.|.|...++...--+..
T Consensus 558 ~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei-~~~~Llp~~~~l~~--D--------~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 558 EIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEI-TCEDLLPVFLDLVK--D--------PVANVRINVAKHLPKILK 625 (759)
T ss_pred hhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHH-HHHHHhHHHHHhcc--C--------CchhhhhhHHHHHHHHHh
Confidence 222222222222 23778899999997777776543 46678888888663 2 556777777776666666
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 203 ~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.+...... +...|.+..+....|++||.+|=.+.+++-+.
T Consensus 626 ~L~~~~~~----~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 626 LLDESVRD----EEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hcchHHHH----HHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 66664443 35667888888888999999999999999765
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.65 E-value=4.3 Score=48.10 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=113.2
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHH
Q 020839 41 ALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREI 119 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i 119 (320)
.++.|..-+...|+.++..|..+-...- ....|-+ .-.+..+.+.++.|+.+-+.-|+.+++=++.. . ++...+
T Consensus 451 LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~--~-~qir~i 525 (2102)
T PLN03200 451 LISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--AGGIPPLVQLLETGSQKAKEDSATVLWNLCCH--S-EDIRAC 525 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--c-HHHHHH
Confidence 3333443334445566554444332221 1111111 34566777777777755556667777766652 1 123333
Q ss_pred H-H-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHH
Q 020839 120 L-E-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAW 197 (320)
Q Consensus 120 ~-~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW 197 (320)
. + ...|+|..+++++ +...+..++.+|+-++..+ +.+.+ ..++.++.+ +++.+...+|.+-
T Consensus 526 V~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~--d~~~I----~~Lv~LLls----------dd~~~~~~aL~vL 588 (2102)
T PLN03200 526 VESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTA--DAATI----SQLTALLLG----------DLPESKVHVLDVL 588 (2102)
T ss_pred HHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcc--chhHH----HHHHHHhcC----------CChhHHHHHHHHH
Confidence 3 2 5788899998876 4555567777777665533 33322 445555543 5567777789999
Q ss_pred HHHHhcCCCCccchhh--HHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 198 SFLLTTMDGCSLDSKK--WQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 198 ~lLlT~l~~~~~~~~~--~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
+-+++..+..+..... -...+|.|.++|++.+..++..|..+|+=++-
T Consensus 589 gnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 589 GHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 9999987776433111 13689999999999999999999999988875
No 22
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.34 E-value=6.2 Score=37.84 Aligned_cols=121 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC--CCHHHHH-HHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG--NDPEETE-RTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~--~~~~~~~-~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AA 193 (320)
+.-+.++.+.+.+.++-++. ..+.-++.+++++++-.| .+.+++. .++..|..++.. ++ ..+.+.+++
T Consensus 81 ~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d--~s------~~~~~R~~~ 151 (309)
T PF05004_consen 81 EDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTD--SS------ASPKARAAC 151 (309)
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhC--Cc------cchHHHHHH
Confidence 34466777788888877665 445678899998888833 4444444 555577777753 32 344555666
Q ss_pred HHHHHHHHhcCCCCccchhhHHhhHH--HHHhhhcCC----------CHHHHHHHHHHHHHHHHh
Q 020839 194 VSAWSFLLTTMDGCSLDSKKWQQSIS--YFSTLLDKD----------DRSIRIAAGEALALILET 246 (320)
Q Consensus 194 L~aW~lLlT~l~~~~~~~~~~~~~l~--~l~~lL~s~----------d~~VRiAAGEaiALl~E~ 246 (320)
+.+-|++.-......-.....-+.|. .+...+.++ +..|..||=.+-+|+.=.
T Consensus 152 ~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~ 216 (309)
T PF05004_consen 152 LEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTT 216 (309)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhc
Confidence 66655544433322111111113344 222333322 467999999999999754
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.13 E-value=4.5 Score=44.22 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=117.9
Q ss_pred hhHHHHHHHhccchhHH--HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCC--C-HHHHHHHHH-HHhHH-hh
Q 020839 36 TLLDEALDALYEKRGST--REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--S-SREIALASH-AIGLL-AL 108 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~--Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg--~-~~E~~lA~~-~l~Ll-~l 108 (320)
..+-.+|-.+.+|+++. +..+|.-++.++..+..+.|= ....-|..-+..++--. + .-|+.+-++ ++-.+ -+
T Consensus 476 slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh-p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl 554 (1233)
T KOG1824|consen 476 SLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH-PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL 554 (1233)
T ss_pred ccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc-cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc
Confidence 35666777789998876 999999999999999987653 23334444444444211 1 355543333 22222 23
Q ss_pred hcCCCCChHHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCC
Q 020839 109 TVGYGENSREILEESVAPISQALK-SGFDSSKIASLLECLAV-ITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPS 186 (320)
Q Consensus 109 tlg~~~~~~~i~~~~~~~L~~~i~-d~s~s~~r~~~i~aLa~-~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~ 186 (320)
+-+.+-+....+..+...-.+.++ ..++-++|-.+|.|.|. ++-+|.-...++..++.++.+-+. +
T Consensus 555 ~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~------------n 622 (1233)
T KOG1824|consen 555 QPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG------------N 622 (1233)
T ss_pred CCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh------------c
Confidence 332222334444444444444444 45677899999999993 344454455667777777766542 2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHH
Q 020839 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEA 239 (320)
Q Consensus 187 ~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEa 239 (320)
..-.-+|..|.++.++..-.-... ..+.+.+|.+...|....+..|.+-=-+
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i~l~-~~l~~il~~l~~flrK~~r~lr~~~l~a 674 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDIDLS-PVLTEILPELASFLRKNQRALRLATLTA 674 (1233)
T ss_pred hhHHHHHHHHHHHHHhccceeehh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234567888888888765444433 6678889999999988888888764333
No 24
>PF05536 Neurochondrin: Neurochondrin
Probab=93.03 E-value=6.3 Score=40.86 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=114.7
Q ss_pred hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHH----hhhh-HHHHHHHHHHhhcCCC---HHHH-HHHHHHHhH
Q 020839 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQF----VEKK-FATLLHQCLSSIKRGS---SREI-ALASHAIGL 105 (320)
Q Consensus 35 ~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~----v~~~-~~tL~~~~~~~ikkg~---~~E~-~lA~~~l~L 105 (320)
.+.+++|+..|..|+-..|-.||--+.+.+...-.... |-+. -..+++.+++.-...+ +.+. .||..+++-
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999977799999655555443332111 1111 1456666666544322 3333 577777777
Q ss_pred HhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHhhcCCCCCcc
Q 020839 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNV 180 (320)
Q Consensus 106 l~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~-----~l~~i~~~~~g~~~ 180 (320)
+|. .+.--++.=+-.-.|+|-.++...+.......|+.||..++ + .++....+++ .+-+++..
T Consensus 84 f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s-~~~G~~aLl~~g~v~~L~ei~~~------ 151 (543)
T PF05536_consen 84 FCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---S-SPEGAKALLESGAVPALCEIIPN------ 151 (543)
T ss_pred HcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---c-CcHhHHHHHhcCCHHHHHHHHHh------
Confidence 765 32222233455578999999998877544456666666555 2 2222333333 34444422
Q ss_pred ccCCCChHHHHHHHHHHHHHHhcCCCCcc--chhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 181 VATRPSAPIITAMVSAWSFLLTTMDGCSL--DSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 181 ~~~~~~~~v~~AAL~aW~lLlT~l~~~~~--~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.+...--|+..|..+++....... ....+...++++........-.-+..+-+-++.++.
T Consensus 152 -----~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 152 -----QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLP 213 (543)
T ss_pred -----CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 234566799999999998774322 223445667888888877665555555555544433
No 25
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.96 E-value=0.19 Score=35.02 Aligned_cols=52 Identities=27% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiA 241 (320)
.+..+|+.+-|-+....+. .. ..+....+|.|..+|..++..||.+|..+|+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~-~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPE-LL-QPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHH-HH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHH-HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3455566555553333222 22 2567789999999999998999999998886
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.83 E-value=12 Score=41.08 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=140.2
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~--~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
+..-+.+.+|+.+||..++..|...+.. .++-+..+...++..+..++.--+ ..=...|+-.+-.+...- +
T Consensus 438 kai~~qlr~ks~kt~~~cf~lL~eli~~--lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~-----~ 510 (1233)
T KOG1824|consen 438 KAIQKQLREKSVKTRQGCFLLLTELINV--LPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH-----P 510 (1233)
T ss_pred HHHHHHHhhccccchhhHHHHHHHHHHh--CcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC-----C
Confidence 3333457899999999999887776653 344455566788888888886333 333334433222222122 2
Q ss_pred HHHHHHhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHhhcCCCCCccccCC
Q 020839 117 REILEESVAPISQALKS-GFDSSKIASLLECLAVITFV-----------GGNDPEETERTMQIMWQIVHPKLGSNVVATR 184 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d-~s~s~~r~~~i~aLa~~~f~-----------~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~ 184 (320)
.+.|.-..|.|..++.- -.++=-+. ...||.+|.=+ +.+....+-.+.++...-+..+|
T Consensus 511 p~~fhp~~~~Ls~~v~~aV~d~fyKi-saEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d-------- 581 (1233)
T KOG1824|consen 511 PEVFHPHLSALSPPVVAAVGDPFYKI-SAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD-------- 581 (1233)
T ss_pred hhhcccchhhhhhHHHHHhcCchHhh-hHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc--------
Confidence 46677777777765553 24441121 22444444333 12334455566666666665543
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCh
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSR 264 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~ 264 (320)
.+-.|.-+|+.+.|.++..+.+.. ...+...+|.|.+-|..+ --|.+|-.|+.+|++.... .+
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l--~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~--i~----------- 644 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFL--GNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLD--ID----------- 644 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccce--ee-----------
Confidence 556888999999999999988543 244568889999888764 3489999999999987542 11
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHHHH
Q 020839 265 EEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFL 312 (320)
Q Consensus 265 ~~~~~~~~~~~~l~~~l~~La~d~s~K~~sKkdrk~qRs~FRdil~tv 312 (320)
....+-+.+.+|+... ||.-|..|..|-..++.+
T Consensus 645 --------l~~~l~~il~~l~~fl------rK~~r~lr~~~l~a~~~L 678 (1233)
T KOG1824|consen 645 --------LSPVLTEILPELASFL------RKNQRALRLATLTALDKL 678 (1233)
T ss_pred --------hhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 1234556667777764 555566666666655544
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.83 E-value=4.7 Score=44.24 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=50.1
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+...+..|.+....+|..+...|-+.- . ...+..+.+.++-....=+..|+.+++-+.-...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----P--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----c--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 4456667788888888988886554321 1 2334455566654443334455555443321111
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVI 150 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~ 150 (320)
..+.|.+.+.+ .++.+|..++.+|+.+
T Consensus 685 ------~~~~L~~~L~~-~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 685 ------PAPALRDHLGS-PDPVVRAAALDVLRAL 711 (897)
T ss_pred ------chHHHHHHhcC-CCHHHHHHHHHHHHhh
Confidence 12355555554 5667777777777653
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.59 E-value=2.8 Score=45.98 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.|.|.+++.|. ++.+|.+++.+|+-+ +.. ...+..++ ..+. .+++.|..+|+.+-+-+
T Consensus 777 ~~~L~~ll~D~-d~~VR~aA~~aLg~~---g~~-~~~~~~l~----~aL~----------d~d~~VR~~Aa~aL~~l--- 834 (897)
T PRK13800 777 GDAVRALTGDP-DPLVRAAALAALAEL---GCP-PDDVAAAT----AALR----------ASAWQVRQGAARALAGA--- 834 (897)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhc---CCc-chhHHHHH----HHhc----------CCChHHHHHHHHHHHhc---
Confidence 34555555554 366777777776654 211 11111111 1121 25567777777776532
Q ss_pred CCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 204 MDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 204 l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
++ +++++.|..+|+.++..||.+|-.+|+-+
T Consensus 835 -~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 835 -AA--------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -cc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 21 35679999999999999999999999875
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.26 E-value=3.3 Score=30.90 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=57.1
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 39 DEALDAL-YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 39 ~~~id~l-~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
+..++.+ .++....|..+...|.+ . .....+..+...++..++.=+..|+.+++- +|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~----~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~----i~------ 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE----L--------GDPEAIPALIELLKDEDPMVRRAAARALGR----IG------ 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC----C--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHC----CH------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----c--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHH----hC------
Confidence 4556667 78888889888865541 1 112445666666655454444566666664 33
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 020839 118 EILEESVAPISQALKSGFDSSKIASLLECLA 148 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa 148 (320)
-.+..|.|.+.+.++.+..+|..|+.+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24578899999998888888999999987
No 30
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.94 E-value=10 Score=40.59 Aligned_cols=154 Identities=18% Similarity=0.310 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhHHh-hhcCCCCChHHHHH--HhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHH
Q 020839 77 FATLLHQCLSSIKRGSSREIALASHAIGLLA-LTVGYGENSREILE--ESVAPISQALKSGFDS-SKIASLLECLAVITF 152 (320)
Q Consensus 77 ~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~-ltlg~~~~~~~i~~--~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f 152 (320)
+...+..+.+.++.++++ .+...++|.++ +++. +.+-..+.+ .+.|.|+..+..+... .....++..+|.++.
T Consensus 488 f~~~i~~L~~~v~~~~~e--e~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSE--EFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 344455566667776633 46667777665 4443 335667776 4889999999877543 555566555554332
Q ss_pred HcCCCHHHHH-----HHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccc-hhhHHhhHHHHHhhhc
Q 020839 153 VGGNDPEETE-----RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLD-SKKWQQSISYFSTLLD 226 (320)
Q Consensus 153 ~~~~~~~~~~-----~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~-~~~~~~~l~~l~~lL~ 226 (320)
++.-.. .++..+.+++..| .++..+|.--+-+|.=++.+=+..+.. .+ .++..+|.+++.
T Consensus 565 ----d~~~A~lL~~sgli~~Li~LL~~k--------qeDdE~VlQil~~f~~ll~h~~tr~~ll~~--~~~~~ylidL~~ 630 (708)
T PF05804_consen 565 ----DPECAPLLAKSGLIPTLIELLNAK--------QEDDEIVLQILYVFYQLLFHEETREVLLKE--TEIPAYLIDLMH 630 (708)
T ss_pred ----CHHHHHHHHhCChHHHHHHHHHhh--------CchHHHHHHHHHHHHHHHcChHHHHHHHhc--cchHHHHHHHhc
Confidence 222111 2345566666553 255677777777777777773332211 11 357889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 020839 227 KDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 227 s~d~~VRiAAGEaiALl~E~~ 247 (320)
..+..||..|-.++-++-|.-
T Consensus 631 d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 631 DKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred CCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998873
No 31
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.49 E-value=1.8 Score=35.11 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=54.8
Q ss_pred HHHHHhhcCC---ChHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHH
Q 020839 126 PISQALKSGF---DSSKIASLLECLAVITFVGGNDPEETE-RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLL 201 (320)
Q Consensus 126 ~L~~~i~d~s---~s~~r~~~i~aLa~~~f~~~~~~~~~~-~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLl 201 (320)
.+...+.|.. ....|..++.+++.+.=+++....... ..|-+|..-+ ..+.+...|+++|..++
T Consensus 15 ~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL------------~~~eL~~~al~~W~~~i 82 (107)
T smart00802 15 VFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSAL------------EIPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CchhHHHHHHHHHHHHH
Confidence 3445566654 235677899999976666665444444 6666777655 33469999999999999
Q ss_pred hcCCCCccchhhHHhhHHH
Q 020839 202 TTMDGCSLDSKKWQQSISY 220 (320)
Q Consensus 202 T~l~~~~~~~~~~~~~l~~ 220 (320)
..++..++. .++...+..
T Consensus 83 ~~L~~~~l~-~ll~~~~~~ 100 (107)
T smart00802 83 KTLKEEELG-PLLDQIFAA 100 (107)
T ss_pred HhCCHHHHH-HHHHHHHHH
Confidence 999986664 344443333
No 32
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.21 E-value=0.42 Score=33.18 Aligned_cols=51 Identities=25% Similarity=0.125 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 020839 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAV 149 (320)
Q Consensus 96 ~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~ 149 (320)
+.-|+.+++-++-..+ +........+.|.|...++|+.. .+|.+++.|||-
T Consensus 4 R~~A~~aLg~l~~~~~--~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~ 54 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCP--ELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHCTTTTTH--HHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhcccH--HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhc
Confidence 4556666666443333 23566788899999999988655 889999999973
No 33
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.16 E-value=15 Score=38.19 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 020839 78 ATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (320)
Q Consensus 78 ~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~ 157 (320)
.+++..+...+--..++=+..+..++-=++..+... + -..+.|.|-..+.|++... ..|+..|+..+|+.--+
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~----d-I~~~ip~Lld~l~dp~~~~--~e~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP----D-IQKIIPTLLDALADPSCYT--PECLDSLGATTFVAEVD 366 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH----H-HHHHHHHHHHHhcCcccch--HHHHHhhcceeeeeeec
Confidence 344444444443223333345555555555555531 2 2345666666666665332 35889999999987655
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHH
Q 020839 158 PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAG 237 (320)
Q Consensus 158 ~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAG 237 (320)
.-. +.++--|+... .+ .-+..+.=.+....+.+...+++......++.+.+|.|-.-+.-..++||--|.
T Consensus 367 ~ps----LalmvpiL~R~--l~----eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 367 APS----LALMVPILKRG--LA----ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred chh----HHHHHHHHHHH--Hh----hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence 532 33333333221 11 112233344556667777888554444478889999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 020839 238 EALALILETGSL 249 (320)
Q Consensus 238 EaiALl~E~~~~ 249 (320)
.+++.+.|....
T Consensus 437 rAL~~l~e~~g~ 448 (569)
T KOG1242|consen 437 RALGALLERLGE 448 (569)
T ss_pred HHHHHHHHHHHh
Confidence 999988887554
No 34
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.14 E-value=4.5 Score=38.26 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=71.9
Q ss_pred HHHHHHH-HhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH-HHHHHcCC
Q 020839 79 TLLHQCL-SSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA-VITFVGGN 156 (320)
Q Consensus 79 tL~~~~~-~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa-~~~f~~~~ 156 (320)
++++.++ .+++.....=+.+|.+++||.|+--. ++-.+.++.+.+.+..+ +...|..|+.++. ++..+|-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~------~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK------ELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh------HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCch
Confidence 6665555 78887666455799999999997644 66777888888888543 7788888888887 44444432
Q ss_pred C---------HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHH
Q 020839 157 D---------PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFL 200 (320)
Q Consensus 157 ~---------~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lL 200 (320)
- ......+++++..++.+ .++.+.++|.+|++=|
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~----------~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDS----------ENPELQAIAVEGLCKL 141 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHH
Confidence 1 12344567777777754 3556778888877643
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=35 Score=38.26 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=107.3
Q ss_pred HHHhccch--hHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC-CChHH
Q 020839 42 LDALYEKR--GSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG-ENSRE 118 (320)
Q Consensus 42 id~l~eKr--ss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~-~~~~~ 118 (320)
++...+++ ..++..+++-|..++...+...|+..+..++...+..++..-+ +-..+-|+-+|-.+-=+.+ +..+-
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~--~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS--SPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44444544 3347788887888888766677777788888888877776544 3333333333333222221 11223
Q ss_pred HHHHhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 119 ILEESVAPISQALKSGFDS--SKIASLLECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 119 i~~~~~~~L~~~i~d~s~s--~~r~~~i~aLa~~~f~--~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
|...+..++... ++.... ..+-+|+..++-+..+ -|+++ ..+.++-+..+|+. |.. +++.-++++-|
T Consensus 736 i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isa--gl~----gd~~~~~as~I 806 (1176)
T KOG1248|consen 736 IPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISA--GLV----GDSTRVVASDI 806 (1176)
T ss_pred HHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHh--hhc----ccHHHHHHHHH
Confidence 333333333333 333322 3444555555522222 23333 45666666777755 311 24445555547
Q ss_pred HHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 195 SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
-+.+-++-.-... +..+.+...+.-....|.++.++||.||=-.|..+.
T Consensus 807 vai~~il~e~~~~-ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 807 VAITHILQEFKNI-LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7777666553332 233666778888889999999999999977666553
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.91 E-value=25 Score=35.96 Aligned_cols=193 Identities=17% Similarity=0.142 Sum_probs=110.6
Q ss_pred hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHh-hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC
Q 020839 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFV-EKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 35 ~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v-~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
...+...+..+.+...+..+.|...|.++..+..-.+.+ . ..+...+.+.+++.++.-+. |++.+++ .+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~---~~~~~~L~~l~~~~~~~vR~---Rv~el~v-~i~~~ 190 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD---SNLLSKLKSLMSQSSDIVRC---RVYELLV-EIASH 190 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC---cchHHHHHHHHhccCHHHHH---HHHHHHH-HHHhc
Confidence 347777888898888888888888877777655433322 2 12255555556654543343 4444433 22211
Q ss_pred CChHHHHHHhHH--HHHHHhh--cCCChHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHhhcCCCCCccccCCCCh
Q 020839 114 ENSREILEESVA--PISQALK--SGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 114 ~~~~~i~~~~~~--~L~~~i~--d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~--~~m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
+++.++.... .+..++. ++.+.-++.+|+..|+-++- .-.+..=+. ..++-+-.++...... + ....
T Consensus 191 --S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d-p---~~~~ 263 (503)
T PF10508_consen 191 --SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED-P---RLSS 263 (503)
T ss_pred --CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC-C---cccc
Confidence 3444444332 4444444 23677788888887776554 111111000 1222233333221111 0 0223
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
-++-..+..++-+++. .+..+. ......+..+.+++++.|...|..|=+++|.+
T Consensus 264 ~~l~g~~~f~g~la~~-~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARV-SPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred hhhhhHHHHHHHHHhc-ChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 4455677888888887 555554 33345667778889999999999999999988
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.90 E-value=4.3 Score=31.50 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVG 154 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~ 154 (320)
++..+...+++++..-+.-|+.+++-++..... ....+.+ .+.|.|.+.+.+. ++..+..|+.+|+-++...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNND--NIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH--HHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 455677777777766667777777777765332 2445555 7889999988874 6677778888888776643
No 38
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.67 E-value=18 Score=35.92 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 189 v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.-.+-|.|++.++..+|..-+. ..+...+|-|.+-|+.+|.+||.++=+++..+.+-
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 5667899999999999976555 56678999999999999999999999999888665
No 39
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.19 E-value=32 Score=35.00 Aligned_cols=190 Identities=15% Similarity=0.177 Sum_probs=124.9
Q ss_pred hhHHHHHHHhccc-hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCC
Q 020839 36 TLLDEALDALYEK-RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 36 ~~l~~~id~l~eK-rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
+...+.+..+..- +++.|+.||..|.+++.-.-..-+ ++++.+|+..+..-+.+.. ..-..+|+|++.=+|-.=
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvW-eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q--- 361 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVW-EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ--- 361 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHH-HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc---
Confidence 4555566666543 777899999999988865533222 3456788888888786632 344579999888776332
Q ss_pred CChHHHHHHhHHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 020839 114 ENSREILEESVAPISQALKSGFDS---SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~d~s~s---~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
...+|+...-...+++.-.-++ ..+.+.=.|+-+++-+-.- .....+--+|-. .+....
T Consensus 362 --~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt----------~D~~~~ 423 (516)
T KOG2956|consen 362 --PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILT----------ADEPRA 423 (516)
T ss_pred --hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhc----------CcchHH
Confidence 3467777777777777744332 4454544555555444321 112222222211 333555
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 191 ~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.++|..-.=|.-.++..++. .++.+.+|.+..=-+|....||.+|==+|--+|-..-
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~-~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELL-NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHH-HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 67888888888777777776 6777889999999999999999999999888887533
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=86.42 E-value=36 Score=35.45 Aligned_cols=186 Identities=15% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC---HHHHHHHHHHHhHHhhhcCCCC
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~---~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
++.....++--..+.|..+=..+...........+.. ..+++.+-+.++--+ .+| .+.-+....+-.+|..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~---~~~l~~l~~ai~dk~~~~~re--~~~~a~~~~~~~Lg~~- 209 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE---FGFLDNLSKAIIDKKSALNRE--AALLAFEAAQGNLGPP- 209 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh---hhHHHHHHHHhcccchhhcHH--HHHHHHHHHHHhcCCC-
Confidence 3333444442233335554444444444444433333 344555555554222 344 5666667777788864
Q ss_pred ChHHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH-HHHHhhcCCCCCccccCCCChHHH
Q 020839 115 NSREILEESVAPISQALKSGF--DSSKIASLLECLAVITF-VGGNDPEETERTMQ-IMWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s--~s~~r~~~i~aLa~~~f-~~~~~~~~~~~~m~-~l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
.+- | +.|.|-.++..-+ ...+|.++..|.=.+.+ +.... +...+- .+.++... .+.-.
T Consensus 210 -~EP-y--iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK~llpsll~~l~~~-----------kWrtK 271 (569)
T KOG1242|consen 210 -FEP-Y--IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VKLLLPSLLGSLLEA-----------KWRTK 271 (569)
T ss_pred -CCc-h--HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hhHhhhhhHHHHHHH-----------hhhhH
Confidence 222 2 2333333344322 22455454444422211 11111 111111 11222211 12223
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 191 ~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.++++.-+.+.-..|..- +..+...+|.+++.|-.++++||-|+.+++==+-+...+
T Consensus 272 ~aslellg~m~~~ap~qL--s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 272 MASLELLGAMADCAPKQL--SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred HHHHHHHHHHHHhchHHH--HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc
Confidence 577888887777666532 244568899999999999999999999999887777554
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=28 Score=37.09 Aligned_cols=170 Identities=12% Similarity=0.126 Sum_probs=99.0
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHH---HhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAF---NNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l---~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
.|......|+.-...+-|-++.+|.+++ ...+..++..+-..-+++.|++.+|..+++=+..|..++--+.+--
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--- 205 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--- 205 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC---
Confidence 4555555555554455555555555544 4444555554556788999999999988888888888776554332
Q ss_pred CChHHHHHHhHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHhhcCCCCCccccCCCChHHH
Q 020839 114 ENSREILEESVAPISQALK--SGFDSSKIASLLECLAVITFVGGNDPEETERTMQI-MWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~--d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~-l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
+..+|-.+-..|..+.. ...++.+|...|.+|.++.=+ -++.+..-|.- ++-++.. . + ..+..|
T Consensus 206 --~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev---r~dkl~phl~~IveyML~~-t-q-----d~dE~V- 272 (885)
T KOG2023|consen 206 --TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV---RPDKLVPHLDNIVEYMLQR-T-Q-----DVDENV- 272 (885)
T ss_pred --cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh---cHHhcccchHHHHHHHHHH-c-c-----CcchhH-
Confidence 35778777777776555 334568999999999877655 34444433332 2222222 0 0 133345
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhh
Q 020839 191 TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL 225 (320)
Q Consensus 191 ~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL 225 (320)
||.|.-|.++..... +..+.+..++++|+..|
T Consensus 273 --ALEACEFwla~aeqp-i~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 273 --ALEACEFWLALAEQP-ICKEVLQPYLDKLIPVL 304 (885)
T ss_pred --HHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHH
Confidence 455555555554444 33355556665555443
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.93 E-value=7.8 Score=30.73 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 101 HAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 101 ~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
-.++-+++-+|. .....++.+.|++.+.+. ..++.+|-.+|.||.-++-+..+
T Consensus 8 i~Laa~ai~l~~--~~~~~l~~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~ 60 (97)
T PF12755_consen 8 IGLAAVAIALGK--DISKYLDEILPPVLKCFD-DQDSRVRYYACEALYNISKVARG 60 (97)
T ss_pred HHHHHHHHHchH--hHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 344444455553 366677777766664443 44667899999999988888753
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.78 E-value=16 Score=28.96 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh
Q 020839 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK 132 (320)
Q Consensus 53 Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~ 132 (320)
|-.+|-+|...-.... ..+.....+|+..+++++.-...+=+..|+.++.=++-..+. ..-.-|.++++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~--~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALG--KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHch--HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHc
Confidence 4455555444332222 226677789999999999866666678999988888766662 244457888899999888
Q ss_pred cCCCh
Q 020839 133 SGFDS 137 (320)
Q Consensus 133 d~s~s 137 (320)
|+...
T Consensus 79 D~d~~ 83 (97)
T PF12755_consen 79 DPDEN 83 (97)
T ss_pred CCchh
Confidence 87544
No 44
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=83.79 E-value=38 Score=31.63 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 40 ~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg--~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
-....+..+..+.|+.||..|.+.=...--.. ....-+..+++-+..+ ....+..++|++.=++++-. .+
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~----~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~----~~ 129 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQE----QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND----YH 129 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc----hh
Confidence 34455777888889999987765422211112 2233344444444333 25778889999888877644 45
Q ss_pred HHHHHhHHHHHHHhhcCCCh
Q 020839 118 EILEESVAPISQALKSGFDS 137 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s~s 137 (320)
.+.....|.|.+++..++..
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~ 149 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEK 149 (254)
T ss_pred hhHHhhHHHHHHHHHcCChH
Confidence 67777888898888877553
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=59 Score=33.57 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=99.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhhhH--HHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCC
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQH--QFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~--~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
+...+..+.--..+.+..+...++++++...-+ +.+. ..-+++.+..+++++. +.=+.-|+-+++=+| .|..+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi--~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIA--sgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVI--QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIA--SGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHH--HcCcHHHHHHHHccCCChhHHHHHHHHHHHHh--cCchh
Confidence 444455544333344778888888888655432 3222 2367777888887765 222233333333333 33221
Q ss_pred ChHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHhhcCCCCCccccCCCChHHH
Q 020839 115 NSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE---RTMQIMWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 115 ~~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~---~~m~~l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
....+. ....|.+.+.+.+++. .++-.|+.|||-++=-+.. .-++. -.|+-+..++...+ .-.++
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~-~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~---------~~~~l 212 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSA-DVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSD---------KLSML 212 (514)
T ss_pred hccccccCCchHHHHHHhcCCcH-HHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhcccc---------chHHH
Confidence 122221 2355777777666544 4555788888855422211 11111 12333444443311 11122
Q ss_pred HHHHHHHHHHHhcC---CCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 191 TAMVSAWSFLLTTM---DGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 191 ~AAL~aW~lLlT~l---~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
-. -.|+|---.- |+..+ +.+..++|.|..+|.++|.+|..-|.=+|+.+-
T Consensus 213 Rn--~tW~LsNlcrgk~P~P~~--~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 213 RN--ATWTLSNLCRGKNPSPPF--DVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HH--HHHHHHHHHcCCCCCCcH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 12 2455433222 22222 456788999999999999999999988888765
No 46
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.24 E-value=19 Score=40.50 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.++|..-|+.=.....|.+|+.=|..+.-+-+ |+.-+..++-++...++. ..+.|.++||..-+=+|+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~-de~~LDRVlPY~v~l~~D----------s~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID-DEVKLDRVLPYFVHLLMD----------SEADVRATALETLTELLAL 492 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc-hHHHHhhhHHHHHHHhcC----------chHHHHHHHHHHHHHHHhh
Confidence 34455444443444555566666665555543 344455666666665532 7789999999999999999
Q ss_pred CCCCcc-ch-hhHHhhHHHHHhhhcC-CCHHHHHHHHHHHHHHHHhcC
Q 020839 204 MDGCSL-DS-KKWQQSISYFSTLLDK-DDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 204 l~~~~~-~~-~~~~~~l~~l~~lL~s-~d~~VRiAAGEaiALl~E~~~ 248 (320)
+-+-.- ++ -+.+=.+|.|..++.. +..-||+|=+.+||.+-+.++
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 865322 22 2334457999999998 679999999999999877554
No 47
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=83.16 E-value=36 Score=36.22 Aligned_cols=144 Identities=10% Similarity=0.095 Sum_probs=101.9
Q ss_pred HHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHH
Q 020839 64 FNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASL 143 (320)
Q Consensus 64 l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~ 143 (320)
|..|.-.+++ .+++++.+.+|++--+..=|..+++.++.++=+++ ..-+-+.++|-|+.+..-.+...+|..|
T Consensus 377 L~~Kt~~e~~---~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD----~~~vk~~ilP~l~~l~~~tt~~~vkvn~ 449 (700)
T KOG2137|consen 377 LKEKTPPEEV---KEKILPLLYRSLEDSDVQIQELALQILPTVAESID----VPFVKQAILPRLKNLAFKTTNLYVKVNV 449 (700)
T ss_pred HHhhCChHHH---HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc----HHHHHHHHHHHhhcchhcccchHHHHHH
Confidence 4455554444 36777788888886555556788888888887777 3578888999999997677778999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCC-ccchhhHHhhHHHHH
Q 020839 144 LECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC-SLDSKKWQQSISYFS 222 (320)
Q Consensus 144 i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~-~~~~~~~~~~l~~l~ 222 (320)
+.|++.+. +--|...+|+.+.-+... -. ..+|.++-.-+..+--+....+.. ++. .+.++|.+.
T Consensus 450 L~c~~~l~-----q~lD~~~v~d~~lpi~~~-~~------~~dp~iv~~~~~i~~~l~~~~~~g~ev~---~~~VlPlli 514 (700)
T KOG2137|consen 450 LPCLAGLI-----QRLDKAAVLDELLPILKC-IK------TRDPAIVMGFLRIYEALALIIYSGVEVM---AENVLPLLI 514 (700)
T ss_pred HHHHHHHH-----HHHHHHHhHHHHHHHHHH-hc------CCCcHHHHHHHHHHHHHHhhcccceeee---hhhhhhhhh
Confidence 99999877 333455666666665533 10 377888888888888888887774 443 256778777
Q ss_pred hhhcCCC
Q 020839 223 TLLDKDD 229 (320)
Q Consensus 223 ~lL~s~d 229 (320)
.+.-.+.
T Consensus 515 ~ls~~~~ 521 (700)
T KOG2137|consen 515 PLSVAPS 521 (700)
T ss_pred hhhhccc
Confidence 7665544
No 48
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.96 E-value=14 Score=31.29 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 020839 78 ATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (320)
Q Consensus 78 ~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aL 147 (320)
..-+.++.+-|+.+++.++.+|+.++..+.-..|..-..+-.-..+...|.+++.+...+.+|..++..+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 3555677788888889999999999999999988532233334456777888887766666666665555
No 49
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.58 E-value=3.1 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 020839 123 SVAPISQALKSGFDSSKIASLLECLAVIT 151 (320)
Q Consensus 123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~ 151 (320)
+.|.+.+.++|+ ++.+|.+++.||+-++
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 468888888866 6788999999998765
No 50
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.21 E-value=14 Score=38.25 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=76.7
Q ss_pred hHHHHHHHhccc----hhHHHHHHHHHHHHHHHhhhhH------------HHhhhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 020839 37 LLDEALDALYEK----RGSTREKALSSIIEAFNNTLQH------------QFVEKKFATLLHQCLSSIKRGSSREIALAS 100 (320)
Q Consensus 37 ~l~~~id~l~eK----rss~Re~~L~~l~~~l~~~~~~------------~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~ 100 (320)
.++.+.+.+..+ +...|..++-++..+..+.... ....+...-|...+..+..+++..+..+++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 555555554432 2334666665555444332222 111223344555566666777788889999
Q ss_pred HHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC-CCh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCC
Q 020839 101 HAIGLLALTVGYGENSREILEESVAPISQALKSG-FDS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGS 178 (320)
Q Consensus 101 ~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~-s~s-~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~ 178 (320)
++++=+ | ...+.|+|.+.+.+. ..+ ..|.+|+.||--+... ......+.++.|+...
T Consensus 512 kaLgN~----g--------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~------~~~~v~~~l~~I~~n~--- 570 (618)
T PF01347_consen 512 KALGNL----G--------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH------CPEKVREILLPIFMNT--- 570 (618)
T ss_dssp HHHHHH----T---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-------HHHHHHHHHHHHH-T---
T ss_pred HHhhcc----C--------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc------CcHHHHHHHHHHhcCC---
Confidence 999864 4 124778999988877 444 7899999988733211 2345667788888652
Q ss_pred ccccCCCChHHHHHHH
Q 020839 179 NVVATRPSAPIITAMV 194 (320)
Q Consensus 179 ~~~~~~~~~~v~~AAL 194 (320)
..++.+.+||+
T Consensus 571 -----~e~~EvRiaA~ 581 (618)
T PF01347_consen 571 -----TEDPEVRIAAY 581 (618)
T ss_dssp -----TS-HHHHHHHH
T ss_pred -----CCChhHHHHHH
Confidence 35677888886
No 51
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.95 E-value=43 Score=34.30 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=76.5
Q ss_pred hHHHHHHHhccc----hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHH-HHHHHHhHHhhhcC
Q 020839 37 LLDEALDALYEK----RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIA-LASHAIGLLALTVG 111 (320)
Q Consensus 37 ~l~~~id~l~eK----rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~-lA~~~l~Ll~ltlg 111 (320)
.+...+..+.+| +.+.|-.+...|.+.++. .|+-+..++.++++.+++++.-+..+|.. -|.+++..+.=-..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~--~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASG--APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc--CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 344444444444 455699999999988876 67778888899999999999988765542 23333322221111
Q ss_pred CCCChHHHHHHhHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 112 YGENSREILEESVAPISQALK--SGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 112 ~~~~~~~i~~~~~~~L~~~i~--d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
...+-.-+.|+-.++.+ +..++..|.+++..+|.+.-++|.+.+
T Consensus 333 ----~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 333 ----NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred ----hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 11222234444444433 777889999999999999999887654
No 52
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.74 E-value=33 Score=34.31 Aligned_cols=47 Identities=30% Similarity=0.187 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.++.|.++|+.+-|.+=. ..++|.|...+.+.|.+||.+|-++++++
T Consensus 159 ~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 159 EDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred CCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 667888888887765421 24567788889999999999999999776
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=80.65 E-value=90 Score=33.82 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=87.8
Q ss_pred HHHHh-hcCCCHHHHHHHHH-HHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCCHH
Q 020839 83 QCLSS-IKRGSSREIALASH-AIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 83 ~~~~~-ikkg~~~E~~lA~~-~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
..-.+ +.+++..++.=|.| +++- ++.|. + +..++|.+.+-+. ..+. -+| -+ +==+--++...++
T Consensus 22 ~~~sg~l~s~n~~~kidAmK~iIa~--M~~G~--d----mssLf~dViK~~~-trd~ElKr--L~--ylYl~~yak~~P~ 88 (757)
T COG5096 22 ALSSGRLESSNDYKKIDAMKKIIAQ--MSLGE--D----MSSLFPDVIKNVA-TRDVELKR--LL--YLYLERYAKLKPE 88 (757)
T ss_pred hhccccccccChHHHHHHHHHHHHH--HhcCC--C----hHHHHHHHHHHHH-hcCHHHHH--HH--HHHHHHHhccCHH
Confidence 33344 66667888877777 4443 34663 2 5556666666666 4454 445 11 1112223445665
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHH
Q 020839 160 ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEA 239 (320)
Q Consensus 160 ~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEa 239 (320)
......+.+..=+ + .+++-+.+.||+.-+. +... +++...++-+..+|.+++.-||..|.=+
T Consensus 89 ~~lLavNti~kDl----~------d~N~~iR~~AlR~ls~----l~~~----el~~~~~~~ik~~l~d~~ayVRk~Aala 150 (757)
T COG5096 89 LALLAVNTIQKDL----Q------DPNEEIRGFALRTLSL----LRVK----ELLGNIIDPIKKLLTDPHAYVRKTAALA 150 (757)
T ss_pred HHHHHHHHHHhhc----c------CCCHHHHHHHHHHHHh----cChH----HHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 5554444444422 1 2788999999997554 3332 6777899999999999999999999999
Q ss_pred HHHHHHhcCC
Q 020839 240 LALILETGSL 249 (320)
Q Consensus 240 iALl~E~~~~ 249 (320)
|+=+|.+...
T Consensus 151 v~kly~ld~~ 160 (757)
T COG5096 151 VAKLYRLDKD 160 (757)
T ss_pred HHHHHhcCHh
Confidence 9999998653
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=93 Score=33.64 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcC----------C-----
Q 020839 50 GSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVG----------Y----- 112 (320)
Q Consensus 50 ss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg----------~----- 112 (320)
.+.|.++|.-|++++.-+| +..|.+. .|...-+...|. ..+| .|.+++..-+--.. .
T Consensus 231 ~~i~~aa~~ClvkIm~LyY~~m~~yM~~---alfaitl~amks-~~de--ValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMSLYYEFMEPYMEQ---ALFAITLAAMKS-DNDE--VALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcC-CcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3458999999998887666 4555553 355555666663 2233 34455544331111 0
Q ss_pred -CCC----hHHHHHHhHHHHHHHhhc-CC----Ch-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccc
Q 020839 113 -GEN----SREILEESVAPISQALKS-GF----DS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVV 181 (320)
Q Consensus 113 -~~~----~~~i~~~~~~~L~~~i~d-~s----~s-~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~ 181 (320)
.+. +..-...+.|+|..+++- +. +. ..-.++-.||.+.+=.++++. +...|.|+++-|.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I--v~~Vl~Fiee~i~~------- 375 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI--VPHVLPFIEENIQN------- 375 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc--hhhhHHHHHHhcCC-------
Confidence 000 111223577888887763 22 12 344477889999888887665 33666666665533
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 182 ATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 182 ~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
++..=.-||.-++|..+---....+. .+...++|.+..++..+.+-||=+|.-++.=+.+.
T Consensus 376 ---pdwr~reaavmAFGSIl~gp~~~~Lt-~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 376 ---PDWRNREAAVMAFGSILEGPEPDKLT-PIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred ---cchhhhhHHHHHHHhhhcCCchhhhh-HHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 55566677778888877766665555 56678888888888866788887777777777665
No 55
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.62 E-value=3.6 Score=26.72 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.6
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 216 QSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 216 ~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
..+|.|..+|.+.|.+||..|.-+|.=|
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5699999999999999999998887643
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=78.84 E-value=1e+02 Score=33.40 Aligned_cols=184 Identities=12% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
......++.+++.-.|..|.-.+.+++...+ +.+.. ..+++.+...+.-.++ ...+.-+..|.-+.-...
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~--~~~~~~L~~LL~D~dp--~Vv~nAl~aL~eI~~~~~---- 211 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQ--QDFKKDLVELLNDNNP--VVASNAAAIVCEVNDYGS---- 211 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccc--cchHHHHHHHhcCCCc--cHHHHHHHHHHHHHHhCc----
Confidence 3334445778888888888877777765443 22211 1122233333432222 222222223333321111
Q ss_pred HHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 020839 118 EILEESVAPISQALKSGF--DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s--~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~ 195 (320)
.-++-..+.+.+++..=. +.=..+.++..| +.+.-.+..+...+|+.+...+.+ .+++|+-+|+.
T Consensus 212 ~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~----------~N~AVVl~Aik 278 (746)
T PTZ00429 212 EKIESSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTRVLPRMSH----------QNPAVVMGAIK 278 (746)
T ss_pred hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHHhcC----------CCHHHHHHHHH
Confidence 124555666666665322 232333444444 444445556666777776665544 45688888888
Q ss_pred HHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 196 aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
...-+.+.+++. .....+....+.|..| .+.+.++|..+=.+|-++...
T Consensus 279 ~il~l~~~~~~~-~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 279 VVANLASRCSQE-LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHhcCcCCHH-HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 766655444221 1111122222445555 467899999999999888665
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=77.74 E-value=1.1e+02 Score=33.17 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=82.5
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHH
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSRE 118 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~ 118 (320)
.+.-..|..+....|..++..|+..++.-. -+..+...+.+.+...+-+.+.+.+-.+ ...+.. . .+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-------DvS~LF~dVvk~~~S~d~elKKLvYLYL----~~ya~~-~-pe 101 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGR-------DVSYLFVDVVKLAPSTDLELKKLVYLYV----LSTARL-Q-PE 101 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-------CchHHHHHHHHHhCCCCHHHHHHHHHHH----HHHccc-C-hH
Confidence 333344544445557778877776664332 3345555666666554444443333333 233321 1 12
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHH
Q 020839 119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWS 198 (320)
Q Consensus 119 i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~ 198 (320)
.---+.+.|++-+.|+ ++..|+-|+++|+ +=..++-++.++..+...+. | .+|-|.-+|.-+-.
T Consensus 102 lalLaINtl~KDl~d~-Np~IRaLALRtLs-----~Ir~~~i~e~l~~~lkk~L~--D--------~~pYVRKtAalai~ 165 (746)
T PTZ00429 102 KALLAVNTFLQDTTNS-SPVVRALAVRTMM-----CIRVSSVLEYTLEPLRRAVA--D--------PDPYVRKTAAMGLG 165 (746)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHhc--C--------CCHHHHHHHHHHHH
Confidence 2112233344433332 3455544444333 22333333334444444332 1 45666655555555
Q ss_pred HHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 199 FLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 199 lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
=+.-.-| ..+.. ...++.|.++|...|+.|..+| +++++|+
T Consensus 166 Kly~~~p-elv~~---~~~~~~L~~LL~D~dp~Vv~nA---l~aL~eI 206 (746)
T PTZ00429 166 KLFHDDM-QLFYQ---QDFKKDLVELLNDNNPVVASNA---AAIVCEV 206 (746)
T ss_pred HHHhhCc-ccccc---cchHHHHHHHhcCCCccHHHHH---HHHHHHH
Confidence 4444333 22221 2445677777887788776654 6666676
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.49 E-value=81 Score=33.03 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=100.3
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH
Q 020839 42 LDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE 121 (320)
Q Consensus 42 id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~ 121 (320)
=|.++|||...- .-++.+++-|...-..+.+.+-...|+.-+..+-..+. +. .-++||.++.++-|.+.....+
T Consensus 10 tdKlYekRKaaa-lelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~---rk--GgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 10 TDKLYEKRKAAA-LELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM---RK--GGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc---cc--chHHHHHHHHHHhccccHHHHH
Confidence 355667765331 11344444444444444444333334444433332221 11 2344444444443333333555
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCCCCc-------------cccCCC--
Q 020839 122 ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND-PEETERTMQIMWQIVHPKLGSN-------------VVATRP-- 185 (320)
Q Consensus 122 ~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~-~~~~~~~m~~l~~i~~~~~g~~-------------~~~~~~-- 185 (320)
.+.|+...-. ...+...|--+|.+|=-++=++-++ .-=..+..+.+|.+....|+.. +....+
T Consensus 84 ~iv~Pv~~cf-~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 84 KIVPPVLNCF-SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAST 162 (675)
T ss_pred HhhHHHHHhc-cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccc
Confidence 5555544433 3345567777777775555543322 1112234444454442211110 000000
Q ss_pred ----------------ChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHH-HHHHHhcC
Q 020839 186 ----------------SAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL-ALILETGS 248 (320)
Q Consensus 186 ----------------~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEai-ALl~E~~~ 248 (320)
-..-.=-.+-.|--+|-.+|+.+.- -++.+.++-|-..|..+..+||.-+--++ -++.|+..
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 0111223678899999999997766 45678889999999999999995554433 46667643
No 59
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=76.15 E-value=28 Score=30.90 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 184 RPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 184 ~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
+.++.+.+..|.+-+.|....|-.++...++.+.+..+..++.+.|.+||+++=-++..+.
T Consensus 113 E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 113 EKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred ccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4567888999999999999999988887888899999999999999999999977776664
No 60
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.60 E-value=39 Score=35.78 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=91.7
Q ss_pred HHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHH---HHhhcCCChHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Q 020839 96 IALASHAIGLLALTVGYGENSREILEESVAPIS---QALKSGFDSSKIASLLECLAVITFVGG-NDPEETERTMQIMWQI 171 (320)
Q Consensus 96 ~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~---~~i~d~s~s~~r~~~i~aLa~~~f~~~-~~~~~~~~~m~~l~~i 171 (320)
+.-..|++.=+|+-+|-+ +...+.|+|+ ..++|.+. .+|+..+.+|+-++=..+ -+.+...+.+.-+|.-
T Consensus 334 RhTgiri~qqI~~llG~s-----~l~hl~~l~~ci~~~l~D~~~-~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 334 RHTGIRIAQQICELLGRS-----RLSHLGPLLKCISKLLKDRSR-FVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred hchhhHHHHHHHHHhCcc-----HHhhhhhHHHHHHHHhhccce-eeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 456778888888888853 5566666654 33444332 456666777765554444 4667777888889997
Q ss_pred hcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 172 VHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 172 ~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
+.+ .-+...++=|.|-||.+.++++.... +.-.+++..+-..++|+|-++. -+-+.+|..+.
T Consensus 408 ~~~----------hrgk~l~sfLkA~g~iiplm~peYa~-h~tre~m~iv~ref~spdeemk-----k~~l~v~~~C~ 469 (975)
T COG5181 408 ASQ----------HRGKELVSFLKAMGFIIPLMSPEYAC-HDTREHMEIVFREFKSPDEEMK-----KDLLVVERICD 469 (975)
T ss_pred HHh----------cCCchHHHHHHHhccccccCChHhhh-hhHHHHHHHHHHHhCCchhhcc-----hhHHHHHHHHh
Confidence 765 33466788999999999999986554 5667899999999999987754 34566666553
No 61
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=75.59 E-value=65 Score=29.42 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=73.9
Q ss_pred HHHHHHHHH-HHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--HH
Q 020839 93 SREIALASH-AIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI--MW 169 (320)
Q Consensus 93 ~~E~~lA~~-~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~--l~ 169 (320)
.-|...+.. .+.=+|-..+. --.++.+.+..+++...++..++.|+.+++.+| . .+..++ .|
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~------~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc------~---~~vvd~~s~w 161 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD------HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC------E---AEVVDFYSAW 161 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH------H---HhhccHHHHH
Confidence 444444422 44444444442 234466777777764444566677777877766 2 223333 66
Q ss_pred HhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCcc-chhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 170 QIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSL-DSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 170 ~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~-~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.++.++-|. +.-..+.-+|-.|..++....-... .+.+....+..+=+...+.+.++-..+-++..+.|+
T Consensus 162 ~vl~~~l~~------~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~ 232 (234)
T PF12530_consen 162 KVLQKKLSL------DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFE 232 (234)
T ss_pred HHHHHhcCC------ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHh
Confidence 666654322 3334555568888888777655332 224556777888888888875444444444444433
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=75.52 E-value=54 Score=35.50 Aligned_cols=123 Identities=12% Similarity=0.213 Sum_probs=82.7
Q ss_pred HHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHH
Q 020839 95 EIALASHAIGLLALTVGYGENSREILEESVAPISQALKSG-FDSSKIASLLECLAVITFVGGN---DPEETERTMQIMWQ 170 (320)
Q Consensus 95 E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~-s~s~~r~~~i~aLa~~~f~~~~---~~~~~~~~m~~l~~ 170 (320)
-+.-..+++-=+|+-+|. .+...+.|++ .+|..+ .+...++..+.|+++.+.+-.. +.+.....++-||.
T Consensus 528 aRhTgIkivqqIail~Gc-----svlphl~~lv-~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwk 601 (1172)
T KOG0213|consen 528 ARHTGIKIVQQIAILSGC-----SVLPHLKPLV-KIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWK 601 (1172)
T ss_pred hhchhhHHHHHHHHHhcc-----hhhhhhHHHH-HHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345677888888888885 3444444433 234433 3444444556666666665333 56666688888999
Q ss_pred hhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHH
Q 020839 171 IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRI 234 (320)
Q Consensus 171 i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRi 234 (320)
-+.+ .-+...+|=|.|-|+|...++..... -+-.+.|-.+..=.+|+|-++..
T Consensus 602 gir~----------hrgk~laafLkAigyliplmd~eya~-yyTrevmlil~rEf~sPDeemkk 654 (1172)
T KOG0213|consen 602 GIRQ----------HRGKELAAFLKAIGYLIPLMDAEYAS-YYTREVMLILIREFGSPDEEMKK 654 (1172)
T ss_pred HHHH----------ccChHHHHHHHHHhhccccccHHHHH-HhHHHHHHHHHHhhCCChHHHHH
Confidence 8866 33467789999999999998875443 45567888888888899977765
No 63
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.39 E-value=63 Score=33.31 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=75.6
Q ss_pred hHHHHHHHhccc----hhHHHHHHHHHHHHHHHhhhhH------HHh-hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhH
Q 020839 37 LLDEALDALYEK----RGSTREKALSSIIEAFNNTLQH------QFV-EKKFATLLHQCLSSIKRGSSREIALASHAIGL 105 (320)
Q Consensus 37 ~l~~~id~l~eK----rss~Re~~L~~l~~~l~~~~~~------~~v-~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~L 105 (320)
.++.+.+.+..+ ....|..++-++..+.. ++.. .++ .....-|...+..+..+++..|+.++++++|=
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~-~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVR-RYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHH-HHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 555555555432 22336666655554432 2221 111 22334455555666666677888999999984
Q ss_pred HhhhcCCCCChHHHHHHhHHHHHHHhh-cCCC-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccC
Q 020839 106 LALTVGYGENSREILEESVAPISQALK-SGFD-SSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVAT 183 (320)
Q Consensus 106 l~ltlg~~~~~~~i~~~~~~~L~~~i~-d~s~-s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~ 183 (320)
+|.. . ..++|.+.+. +... ...|.+|+.||--++..+ .....+.++.|+...
T Consensus 473 ----~g~~----~----~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~------p~~v~~~l~~i~~n~-------- 526 (574)
T smart00638 473 ----AGHP----S----SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD------PRKVQEVLLPIYLNR-------- 526 (574)
T ss_pred ----cCCh----h----HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC------chHHHHHHHHHHcCC--------
Confidence 4532 2 3345566555 4333 378999999998555433 224566777877542
Q ss_pred CCChHHHHHHHH
Q 020839 184 RPSAPIITAMVS 195 (320)
Q Consensus 184 ~~~~~v~~AAL~ 195 (320)
..++.+.+||+.
T Consensus 527 ~e~~EvRiaA~~ 538 (574)
T smart00638 527 AEPPEVRMAAVL 538 (574)
T ss_pred CCChHHHHHHHH
Confidence 256678888764
No 64
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=1.5e+02 Score=33.40 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=90.6
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.|...|.....+.++.|.++...+.++....+..+.-.+ ..++...+..+.+.+ ..|+..-.-+++.+.
T Consensus 677 ~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~--~~li~~~ls~~~~~~~~~~r~g~~lal~~lp-------- 746 (1133)
T KOG1943|consen 677 NWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEE--APLITRYLSRLTKCSEERIRRGLILALGVLP-------- 746 (1133)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhh--hHHHHHHHHHhcCchHHHHHHHHHHHHccCc--------
Confidence 566677766656668899999988888887776553222 136666676666664 455443333333333
Q ss_pred hHHHHHHhHHHHHHHhhc--CC--ChHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHhhcCC-CCCccccCCC
Q 020839 116 SREILEESVAPISQALKS--GF--DSSKIASLLECLAVIT-----FVGGNDPEETERTMQIMWQIVHPK-LGSNVVATRP 185 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d--~s--~s~~r~~~i~aLa~~~-----f~~~~~~~~~~~~m~~l~~i~~~~-~g~~~~~~~~ 185 (320)
++-+--.....|.+.+.+ ++ .+..|...+-+|+=++ +..+. .+++.++.+....... ..+.. ..
T Consensus 747 ~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~---~~~k~~e~LL~~lddYttd~rG---DV 820 (1133)
T KOG1943|consen 747 SELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSE---SIEKFRETLLNALDDYTTDSRG---DV 820 (1133)
T ss_pred HHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccc---cHHHHHHHHHHHHhhcccccCc---cH
Confidence 122222233333443332 22 3577777777776222 22333 3444444444333111 01111 12
Q ss_pred ChHHHHHHHHHHHHHHhcCCC-CccchhhHHhhHHHHH
Q 020839 186 SAPIITAMVSAWSFLLTTMDG-CSLDSKKWQQSISYFS 222 (320)
Q Consensus 186 ~~~v~~AAL~aW~lLlT~l~~-~~~~~~~~~~~l~~l~ 222 (320)
..-|.-||+.+-.-++.+++. ..+..+.+...+..++
T Consensus 821 GswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~v 858 (1133)
T KOG1943|consen 821 GSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFV 858 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHH
Confidence 236778999999988888885 3333334444444333
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.94 E-value=1.3e+02 Score=32.54 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=97.9
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhhH--------HHhh----hhHHHHHHHHHHhhcCCC---HHHHHHHHHHH
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQH--------QFVE----KKFATLLHQCLSSIKRGS---SREIALASHAI 103 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~--------~~v~----~~~~tL~~~~~~~ikkg~---~~E~~lA~~~l 103 (320)
+-++.+|++|--+.|..||.-++.+...+-+. +++. ..+..++..++...-+.+ -.-+-+...++
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVl 418 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVL 418 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 33566789999999999999888776554433 2221 123333333333222221 22233333333
Q ss_pred hHHhhhcCCCCChHHHHHHhH--------------HHHHHHhhcC----CChHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 020839 104 GLLALTVGYGENSREILEESV--------------APISQALKSG----FDSSKIASLLECLAVITFVGGNDPEETERTM 165 (320)
Q Consensus 104 ~Ll~ltlg~~~~~~~i~~~~~--------------~~L~~~i~d~----s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m 165 (320)
.=|+---| ..-+..|=+++. ..+..++.|+ +.. .+..-+.-|-.++.++|+-.+-++.--
T Consensus 419 veLa~l~~-~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q-~n~~l~eVL~AaaWi~GEyse~ven~~ 496 (877)
T KOG1059|consen 419 VELARLEG-TRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQ-INSQLCEVLYAAAWILGEYSEFVENPN 496 (877)
T ss_pred HHHHhccc-cchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchh-hccchhHHHHHHHHHHHHHHHHhhCHH
Confidence 32221111 122333333322 2344455544 111 111122333333333443333333333
Q ss_pred HHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCC-ccch--hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHH
Q 020839 166 QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC-SLDS--KKWQQSISYFSTLLDKDDRSIRIAAGEALAL 242 (320)
Q Consensus 166 ~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~-~~~~--~~~~~~l~~l~~lL~s~d~~VRiAAGEaiAL 242 (320)
+.+.....++..--+.+ ..+..+-+...-++.+.+..... +... .+.+..+.+|..+..+.|++||=-|.+++-|
T Consensus 497 ~~leamlrpr~~~lp~~--iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l 574 (877)
T KOG1059|consen 497 DTLEAMLRPRSDLLPGH--IQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL 574 (877)
T ss_pred HHHHHHhcCccccCchH--HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence 33334344421111110 22355667777788777776553 2221 2234556778888889999999998887766
Q ss_pred HH
Q 020839 243 IL 244 (320)
Q Consensus 243 l~ 244 (320)
+-
T Consensus 575 i~ 576 (877)
T KOG1059|consen 575 IR 576 (877)
T ss_pred HH
Confidence 53
No 66
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.07 E-value=52 Score=27.22 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhc--CCChHHHHHHHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKS--GFDSSKIASLLECLAVIT 151 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d--~s~s~~r~~~i~aLa~~~ 151 (320)
..+.++.+-|+.|++.++.+|+.++-.+.-..|..- -.+|-. ++..-|.+++.. ..+..+|..++..+---+
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f-~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPF-HLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHH-HHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 444567777888889999999999999999988621 123332 455567787776 345577777766665333
No 67
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=42 Score=34.63 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=65.1
Q ss_pred hHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHH
Q 020839 123 SVAPISQALKSGF-DSSKIASLLECLAVITFVGG--NDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF 199 (320)
Q Consensus 123 ~~~~L~~~i~d~s-~s~~r~~~i~aLa~~~f~~~--~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~l 199 (320)
+.++|.+.+.... .+..| .+.++|.-+|--.- ...+.+...+..+...+++ .++.|.+=| +|++
T Consensus 195 ~l~pLl~~l~~~~~~~~lR-n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~----------~D~~Vl~Da--~WAl 261 (514)
T KOG0166|consen 195 ALDPLLRLLNKSDKLSMLR-NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS----------TDEEVLTDA--CWAL 261 (514)
T ss_pred chHHHHHHhccccchHHHH-HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc----------CCHHHHHHH--HHHH
Confidence 3455555555443 34444 56677766555431 2346667777777777765 445555433 5766
Q ss_pred H-HhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHH
Q 020839 200 L-LTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALAL 242 (320)
Q Consensus 200 L-lT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiAL 242 (320)
- ||--+...+..-+--..+|+|+++|.+....|+.+|=.+|.=
T Consensus 262 syLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 262 SYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred HHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 6 444444443311122578999999999999999888777654
No 68
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=70.35 E-value=44 Score=32.91 Aligned_cols=132 Identities=12% Similarity=0.082 Sum_probs=77.4
Q ss_pred HHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh----cCCC-hHHHHHHHHHHHHHHHHcC------CCHHHHHHH
Q 020839 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALK----SGFD-SSKIASLLECLAVITFVGG------NDPEETERT 164 (320)
Q Consensus 96 ~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~----d~s~-s~~r~~~i~aLa~~~f~~~------~~~~~~~~~ 164 (320)
+..|+.++--+|-..+ ..+..-+..++..+++ +++. ...|-.|++-++.++.-+. .+..+...+
T Consensus 228 R~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFE-----KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 4566666666665544 3444444455555555 4443 2455555555554444442 233455577
Q ss_pred HHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHH
Q 020839 165 MQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (320)
Q Consensus 165 m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEai 240 (320)
.+++...|-+..- .+. +..|-+.+.||.--.-.-..+|+ +.+...+|.+...|.+++.-|+.=|+.+|
T Consensus 303 ~~Ff~~~v~peL~--~~~-~~~piLka~aik~~~~Fr~~l~~-----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ--PDV-NSHPILKADAIKFLYTFRNQLPK-----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH---SS--S-HHHHHHHHHHHHHHGGGS-H-----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc--ccC-CCCcchHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 8888888766211 111 35678888898765555555443 56678999999999999999999998775
No 69
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.79 E-value=59 Score=27.00 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChH-HHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSS-KIASLLECL 147 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~-~r~~~i~aL 147 (320)
..+.++.+-|+.+++.++.+|+.++..+.-..|..-..+-....+...|.+++.+..... +|-.++..+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 334567777888889999999999999999998532233334557778888888765543 565555444
No 70
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.71 E-value=1.7e+02 Score=31.98 Aligned_cols=173 Identities=9% Similarity=0.139 Sum_probs=110.1
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.|-+.+.-|-+-|+.+=..|-.+++--+..+ +...-++..++|-++..+ .=+..-++.++.+++.-.
T Consensus 287 lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~----- 353 (968)
T KOG1060|consen 287 LLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRSNR-EVQYVVLQNIATISIKRP----- 353 (968)
T ss_pred HHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcch-----
Confidence 4444444455666554344443333212111 134455677777676433 445667788888887755
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
.+ +.|+++.-.--++++.. .++.=|-|++-+.. ...+..++.=|+.+|.+. +. .++++|+++
T Consensus 354 -~l---F~P~lKsFfv~ssDp~~--vk~lKleiLs~La~--esni~~ILrE~q~YI~s~---------d~-~faa~aV~A 415 (968)
T KOG1060|consen 354 -TL---FEPHLKSFFVRSSDPTQ--VKILKLEILSNLAN--ESNISEILRELQTYIKSS---------DR-SFAAAAVKA 415 (968)
T ss_pred -hh---hhhhhhceEeecCCHHH--HHHHHHHHHHHHhh--hccHHHHHHHHHHHHhcC---------ch-hHHHHHHHH
Confidence 34 56899886665666532 13455555555543 334666677778888662 33 589999999
Q ss_pred HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
-|.-++.+-.+. ..+|.-|+.+|.+.|-.|=.+|--.|=.+.+.
T Consensus 416 iGrCA~~~~sv~------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 416 IGRCASRIGSVT------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHhhCchh------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 999988866553 47899999999999888887777777776665
No 71
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.36 E-value=1.7e+02 Score=31.51 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=68.5
Q ss_pred HHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhhcCCCCCc
Q 020839 102 AIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSN 179 (320)
Q Consensus 102 ~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f~~~~~~~~-~~~~m~~l~~i~~~~~g~~ 179 (320)
++.+++--.| +++...++|.|+..+.. +. ..|-+.+.|||.++==|-.+... .-++.-++......| .
T Consensus 378 aLDVLanvf~-----~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK---k 447 (885)
T KOG2023|consen 378 ALDVLANVFG-----DELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK---K 447 (885)
T ss_pred HHHHHHHhhH-----HHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC---c
Confidence 4444444444 57888888888887765 33 66777888888765322222111 113444555544322 1
Q ss_pred cccCCCChHHHHHHHHHHHHHHhcCCCCccc---hhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 180 VVATRPSAPIITAMVSAWSFLLTTMDGCSLD---SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 180 ~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~---~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
| ..-.+.+|+| +.-..|-+. .++....+.-|...|=.++..||=||.-+.|.+-|-+.
T Consensus 448 -------p--lVRsITCWTL--sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 448 -------P--LVRSITCWTL--SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred -------c--ceeeeeeeeH--hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 1 1223456654 222222221 13333444333333335689999999999999877655
No 72
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=68.70 E-value=1.6e+02 Score=31.11 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHh-hhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 020839 76 KFATLLHQCLSSIKRGSSREIALASHAIGLLA-LTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVG 154 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~-ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~ 154 (320)
.++.+-.-.++.++..-++=...|+++++-++ +-++ ...|..++..|.+-+-+...+..+ +.+|++|.+.|
T Consensus 91 ~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp-----~~~wp~lm~~mv~nvg~eqp~~~k---~~sl~~~gy~c 162 (858)
T COG5215 91 SKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELP-----NSLWPGLMEEMVRNVGDEQPVSGK---CESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCc-----cccchHHHHHHHHhccccCchHhH---HHHHHHHHHHh
Confidence 44555566777777544666678888777665 3333 345766666666665555444433 47889999998
Q ss_pred CC-CHHHHHHHHH-HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHH
Q 020839 155 GN-DPEETERTMQ-IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSI 232 (320)
Q Consensus 155 ~~-~~~~~~~~m~-~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~V 232 (320)
.+ +++++...-+ ++..|+.. ..-+ .++.++.-|||.+..=-+-.+-..--+.+.-.=.|....+.-+++|.+|
T Consensus 163 es~~Pe~li~~sN~il~aiv~g---a~k~--et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~ 237 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMG---ALKN--ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEEL 237 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHh---hccc--CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHH
Confidence 74 6656655444 46666643 1111 3667888889887654333332211111111123455667778999999
Q ss_pred HHHHHHHHHHHHHh
Q 020839 233 RIAAGEALALILET 246 (320)
Q Consensus 233 RiAAGEaiALl~E~ 246 (320)
+-||=-++-=|.=+
T Consensus 238 q~aafgCl~kim~L 251 (858)
T COG5215 238 QHAAFGCLNKIMML 251 (858)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987776655444
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=68.67 E-value=84 Score=27.80 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHh
Q 020839 138 SKIASLLECLAVITFVGGNDPEET-ERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQ 216 (320)
Q Consensus 138 ~~r~~~i~aLa~~~f~~~~~~~~~-~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~ 216 (320)
.....++.+++-++...+...+.. ..++..+...+ |+ ....+..+|-.+-.-+...++ ... .
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~----~~------~~~~i~~~a~~~L~~i~~~~~---~~~----~ 130 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL----GD------SKKFIREAANNALDAIIESCS---YSP----K 130 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG----G---------HHHHHHHHHHHHHHHTTS----H------H
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH----cc------ccHHHHHHHHHHHHHHHHHCC---cHH----H
Confidence 344467788887777766654433 23333344433 21 345677777777666666655 111 2
Q ss_pred h-HHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhh
Q 020839 217 S-ISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVE 287 (320)
Q Consensus 217 ~-l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d 287 (320)
. ++.+...+.+.++.||..+.+.+..+.+...... . .+.. ....+.+...+..+.+|
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~---~----------~l~~-~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS---S----------VLQK-SAFLKQLVKALVKLLSD 188 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--------G----------GG---HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH---h----------hhcc-cchHHHHHHHHHHHCCC
Confidence 2 5778888899999999999999999988744100 0 0100 11136788888888887
No 74
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=68.35 E-value=45 Score=27.13 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHHHHhccc--hhHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHhHHhhhcCCC
Q 020839 38 LDEALDALYEK--RGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYG 113 (320)
Q Consensus 38 l~~~id~l~eK--rss~Re~~L~~l~~~l~~~~~-~~~v~~~~~tL~~~~~~~ikkg~~~E~-~lA~~~l~Ll~ltlg~~ 113 (320)
+.++++.|..+ .....+.+|...-++++++.. ...+.+...+|+..++.-=.+-..+.+ .+-.+++.-++++.+.
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~- 83 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPE- 83 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGG-
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhH-
Confidence 56777777643 345578899988888888876 345666778888888765554432111 3334444444444441
Q ss_pred CChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHH
Q 020839 114 ENSREILEESVAPISQALKSGFDS-SKIASLLECLAVI 150 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~ 150 (320)
.+.|.|.+.+..+.-+ ..|...+.+|+..
T Consensus 84 --------~~~~~L~~~f~~~~~Sl~qR~~iL~~l~~a 113 (114)
T PF10193_consen 84 --------KVAPYLTEEFFSGDYSLQQRMSILSALSLA 113 (114)
T ss_dssp --------GHHH-HHHHHTTS---THHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 2567788888777656 8898888888864
No 75
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.86 E-value=2e+02 Score=31.78 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhhcCCCHHH-HHHHHHHHhHHhhhcCCCCChHHH-HHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 020839 76 KFATLLHQCLSSIKRGSSRE-IALASHAIGLLALTVGYGENSREI-LEESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~~E-~~lA~~~l~Ll~ltlg~~~~~~~i-~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~ 153 (320)
-+.+++..+..-++-...-+ +.+|+|++.-+|=-++.- +..+ -+...|+|..-+.-=.=-.+.-+|+.||=.+.-.
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S--~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS--SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch--hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 35788888888887665344 589999999999777642 2222 2347787765443221112222445555444332
Q ss_pred cCCCHHHHHHHHHH--HHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHH
Q 020839 154 GGNDPEETERTMQI--MWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRS 231 (320)
Q Consensus 154 ~~~~~~~~~~~m~~--l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~ 231 (320)
-...+=..-.+|.+ +.++|+- .+.=+|-|+-+=++ ..+++.+. +++-+++|.|..+|+..|.-
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi-----------~aQR~AlaiaaN~C--ksi~sd~f--~~v~ealPlL~~lLs~~D~k 350 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSI-----------HAQRVALAIAANCC--KSIRSDEF--HFVMEALPLLTPLLSYQDKK 350 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH--hcCCCccc--hHHHHHHHHHHHHHhhccch
Confidence 11111111122332 2223321 01111111111122 23444333 45668999999999988876
Q ss_pred HHHHHHHHHHHHHHh
Q 020839 232 IRIAAGEALALILET 246 (320)
Q Consensus 232 VRiAAGEaiALl~E~ 246 (320)
+=-.+.-+++-+.|-
T Consensus 351 ~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 351 PIESVCICLTRIADG 365 (1051)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666565
No 76
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=65.70 E-value=98 Score=27.45 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=68.4
Q ss_pred hccchhHHHHHHHHHHHHHHHhh--hhH--H--------H------hhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhH
Q 020839 45 LYEKRGSTREKALSSIIEAFNNT--LQH--Q--------F------VEKKFATLLHQCLSSIKRGS-SREIALASHAIGL 105 (320)
Q Consensus 45 l~eKrss~Re~~L~~l~~~l~~~--~~~--~--------~------v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~L 105 (320)
+.+-..+.|.+++..|..+|..- |+. + | +.....++-..+..++.+.+ ..-....+|+++.
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44667788999988888777431 111 1 1 11134555566667776665 4556788899988
Q ss_pred HhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 020839 106 LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (320)
Q Consensus 106 l~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~ 153 (320)
++-..+-..-..++...+.+.++..+.. .++.++.+++.|++++.-+
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC
Confidence 8866654333345555566666666665 6778888888888876543
No 77
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.76 E-value=82 Score=26.24 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=64.6
Q ss_pred hHHHHHHH-hccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDA-LYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~-l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+++.|+. ++++..+.--...-.|++.+.+... .....+..+.+-|+.+++.++.+|+.++-.+.-..|+.-.
T Consensus 5 ~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~------~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 5 SITELIEKATSESLPSPDWSLILEICDLINSSPD------GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTT------HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred hHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555554 3444444434444456666665521 2245566788889999999999999999999998883200
Q ss_pred hHHHHHHhHHHHHHHhhcCCChH---HHHHHHHHHH
Q 020839 116 SREILEESVAPISQALKSGFDSS---KIASLLECLA 148 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~---~r~~~i~aLa 148 (320)
.+-.-..+...|.+++.+..... +|..++.-+-
T Consensus 79 ~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 79 REVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 11112236677888888776553 6656655553
No 78
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.61 E-value=1.8e+02 Score=29.87 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=58.3
Q ss_pred HHHHHHhHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 020839 117 REILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~---s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AA 193 (320)
..+.+.+.|.|.+-+... .+...+..++.|||-+ +.+..+ ..+.-++.. .. ..+..+..+|
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~-----g~~~~i----~~l~~~l~~---~~----~~~~~iR~~A 500 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA-----GHPSSI----KVLEPYLEG---AE----PLSTFIRLAA 500 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc-----CChhHH----HHHHHhcCC---CC----CCCHHHHHHH
Confidence 356677888888776643 3446677888888843 233333 333333432 11 3567889999
Q ss_pred HHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHH
Q 020839 194 VSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEA 239 (320)
Q Consensus 194 L~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEa 239 (320)
+.|.-.+.-..|. .+. .-+++.+.+- ..+.+||+||-=.
T Consensus 501 v~Alr~~a~~~p~-~v~----~~l~~i~~n~--~e~~EvRiaA~~~ 539 (574)
T smart00638 501 ILALRNLAKRDPR-KVQ----EVLLPIYLNR--AEPPEVRMAAVLV 539 (574)
T ss_pred HHHHHHHHHhCch-HHH----HHHHHHHcCC--CCChHHHHHHHHH
Confidence 9888766554433 221 1233444222 5689999998543
No 79
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=63.32 E-value=1.2e+02 Score=30.98 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHhcc-chhHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhc
Q 020839 41 ALDALYE-KRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIK 89 (320)
Q Consensus 41 ~id~l~e-Krss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ik 89 (320)
.++-|.. +....|..||+-|.+++++.+ +.++.+.-..+++++-..+-+
T Consensus 334 l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~ 385 (516)
T KOG2956|consen 334 LLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQD 385 (516)
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCch
Confidence 3344556 666779999999999998887 456666555555555544443
No 80
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.70 E-value=2e+02 Score=30.81 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhh
Q 020839 138 SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQS 217 (320)
Q Consensus 138 ~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~ 217 (320)
.+|..|......+.+...+-..+-+-..+.+-.++.. .+..|+++|+.|. |++=...++. +..
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~----------~D~~Vrt~A~egl---L~L~eg~kL~----~~~ 235 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHD----------QDFRVRTHAVEGL---LALSEGFKLS----KAC 235 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcC----------CCcchHHHHHHHH---Hhhccccccc----HHH
Confidence 4454454444444444443333344444444444432 5668899999983 4443344443 355
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 218 ISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 218 l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
-....+.|..++.+||+||=..+-+.--.
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~ 264 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNR 264 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 67788889899999999998888776444
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=61.91 E-value=2e+02 Score=29.83 Aligned_cols=152 Identities=13% Similarity=0.189 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHhHHhhhcCCCCC--hHHHHHHhHH-HHHHHhhcCCCh---HHHHHHHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALA-SHAIGLLALTVGYGEN--SREILEESVA-PISQALKSGFDS---SKIASLLECLAVIT 151 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA-~~~l~Ll~ltlg~~~~--~~~i~~~~~~-~L~~~i~d~s~s---~~r~~~i~aLa~~~ 151 (320)
.-++.|++.+|..+ .|..+| +-++.=+ +.-++... -..||+.+-| .|.|+++.++.+ ......--|+++++
T Consensus 5 ~~l~~c~~lL~~~~-D~~rfagL~lvtk~-~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD-DTERFAGLLLVTKL-LDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHc-CCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45667888888777 454333 2222222 22221111 1248877654 477888876543 44556677888888
Q ss_pred HHcCCC----HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhc
Q 020839 152 FVGGND----PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLD 226 (320)
Q Consensus 152 f~~~~~----~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~ 226 (320)
-||... ..++....-.|.+++...+ +..++.=|++.-..+.++-.+. ..++ ...+|.|.+++.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s---------~~~~v~dalqcL~~Ias~~~G~---~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSS---------DLETVDDALQCLLAIASSPEGA---KALLESGAVPALCEIIP 150 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCC---------chhHHHHHHHHHHHHHcCcHhH---HHHHhcCCHHHHHHHHH
Confidence 888732 1334445556777775522 1234444444444443221111 1222 256788888777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 020839 227 KDDRSIRIAAGEALALIL 244 (320)
Q Consensus 227 s~d~~VRiAAGEaiALl~ 244 (320)
+.....-+|..--+.++.
T Consensus 151 ~~~~~~E~Al~lL~~Lls 168 (543)
T PF05536_consen 151 NQSFQMEIALNLLLNLLS 168 (543)
T ss_pred hCcchHHHHHHHHHHHHH
Confidence 754444444444444444
No 82
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.81 E-value=73 Score=31.81 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=45.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh---cCCChHHHHHHHHHHHHH
Q 020839 83 QCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK---SGFDSSKIASLLECLAVI 150 (320)
Q Consensus 83 ~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~---d~s~s~~r~~~i~aLa~~ 150 (320)
.+...+|.|...=+..++.+++.++++-- ...+..+..|-|.+.+- |..++.+++.+..||+.+
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~----~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRR----ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHH----HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh
Confidence 45566788888888999999999998865 56788888877666443 445556666666666654
No 83
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=61.05 E-value=3e+02 Score=31.67 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=65.9
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHh-HHh-hhcCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIG-LLA-LTVGYGE 114 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~-Ll~-ltlg~~~ 114 (320)
.+--+|..+ |...+|.+||+-|. .|....- .+.+..+++.-+..++......=++.|...++ +|+ ++--+..
T Consensus 426 ~lts~IR~l--k~~~tK~~ALeLl~-~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRAL--KTIQTKLAALELLQ-ELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhh--hcchhHHHHHHHHH-HHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 333344433 44556677775332 2221111 12356677777888887655555666665332 222 2333333
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~ 153 (320)
++.-+-+=++|.|...+.|.+...+|++-+.||+.++-.
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 454455568899999999987778888888888877654
No 84
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=60.97 E-value=14 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.9
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 216 QSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 216 ~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
..+|.|..+|.+++.+++..|--+|.-+
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999988877644
No 85
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.80 E-value=59 Score=35.08 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=56.4
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHH
Q 020839 122 ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLL 201 (320)
Q Consensus 122 ~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLl 201 (320)
+..|.++..+.|. ++..|..-+.++++ +|+|.+.-..+..++-+. .+..+..|.-||+-+-||++
T Consensus 519 ~Ad~lI~el~~dk-dpilR~~Gm~t~al-Ay~GTgnnkair~lLh~a-------------VsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 519 DADPLIKELLRDK-DPILRYGGMYTLAL-AYVGTGNNKAIRRLLHVA-------------VSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred hhHHHHHHHhcCC-chhhhhhhHHHHHH-HHhccCchhhHHHhhccc-------------ccccchHHHHHHHHHheeeE
Confidence 3445566666665 66666666665553 344444433333333211 11255688899999999988
Q ss_pred hcCCCCccchhhHHhhHHHHHhhhcCC-CHHHHHHHHHHHHHH
Q 020839 202 TTMDGCSLDSKKWQQSISYFSTLLDKD-DRSIRIAAGEALALI 243 (320)
Q Consensus 202 T~l~~~~~~~~~~~~~l~~l~~lL~s~-d~~VRiAAGEaiALl 243 (320)
..=| +.+|..+++|..+ +..||-.|+-++++.
T Consensus 584 ~~dp----------~~~~s~V~lLses~N~HVRyGaA~ALGIa 616 (929)
T KOG2062|consen 584 FRDP----------EQLPSTVSLLSESYNPHVRYGAAMALGIA 616 (929)
T ss_pred ecCh----------hhchHHHHHHhhhcChhhhhhHHHHHhhh
Confidence 6522 3346666666644 788887776555543
No 86
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=60.73 E-value=50 Score=34.21 Aligned_cols=96 Identities=23% Similarity=0.256 Sum_probs=52.9
Q ss_pred HHHHHHhHHHHHHHhh---cCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 020839 117 REILEESVAPISQALK---SGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~---d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AA 193 (320)
..+.+.+.+.|...+. +..+...+..++.|||-+.. + ..+..+..++..+. ..+..+..+|
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----~----~~i~~l~~~i~~~~-------~~~~~~R~~A 544 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----P----ESIPVLLPYIEGKE-------EVPHFIRVAA 544 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------G----GGHHHHHTTSTTSS--------S-HHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----c----hhhHHHHhHhhhcc-------ccchHHHHHH
Confidence 3566667777777666 23445778888999987632 2 23455555554411 2556788888
Q ss_pred HHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc--CCCHHHHHHHH
Q 020839 194 VSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD--KDDRSIRIAAG 237 (320)
Q Consensus 194 L~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~--s~d~~VRiAAG 237 (320)
|.|.--+.... . ....+.|..++. ..+.+|||||-
T Consensus 545 i~Alr~~~~~~------~---~~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 545 IQALRRLAKHC------P---EKVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHTTTTGGGT-------H---HHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred HHHHHHHhhcC------c---HHHHHHHHHHhcCCCCChhHHHHHH
Confidence 87654332221 1 133344444444 55899999994
No 87
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=59.86 E-value=95 Score=33.98 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=67.1
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCH--HHH--HHHHHHHhHHhhhcCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSS--REI--ALASHAIGLLALTVGY 112 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~--~E~--~lA~~~l~Ll~ltlg~ 112 (320)
.+-.++|.+.+|++.-|+.++..+-.++....+ .++++.++-.+|.|++ +.. .+--+.+..+ ++
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l--------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~----~~ 404 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTPL--------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL----GP 404 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc----CC
Confidence 445577889999999999999877776663333 4555677777787763 222 2333333332 21
Q ss_pred CCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 020839 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (320)
Q Consensus 113 ~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~ 155 (320)
--....-...+.|.+...+.|. +..+|-++..|++.+-=+-|
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhh
Confidence 1112345677888887777765 45677788888876665544
No 88
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=2.6e+02 Score=30.30 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=114.8
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhh------HHHhhh-------hHHHHHHHHHHhhcCCC------HHHH-
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQ------HQFVEK-------KFATLLHQCLSSIKRGS------SREI- 96 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~------~~~v~~-------~~~tL~~~~~~~ikkg~------~~E~- 96 (320)
.-.+.+..|.--|.=+|..|.--+++.|-+++- +.+++. -...-+..++--.||.. ..++
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ff 224 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHH
Confidence 555666778888888899999999998877662 233322 12233333333334321 1111
Q ss_pred H---------HHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 020839 97 A---------LASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG--NDPEETERTM 165 (320)
Q Consensus 97 ~---------lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~--~~~~~~~~~m 165 (320)
. .-.+++=|++--..- -..+-..+.|+|..++...++-..--.|+.|.-.+.+..| .+...+.-+.
T Consensus 225 kllttSsNNWmLIKiiKLF~aLtpl---EPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCv 301 (877)
T KOG1059|consen 225 KLLVTSSNNWVLIKLLKLFAALTPL---EPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCV 301 (877)
T ss_pred HHHhccCCCeehHHHHHHHhhcccc---CchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHH
Confidence 0 112333333211111 1356667888888888888777777788887755555544 3344455556
Q ss_pred HHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 166 QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 166 ~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
+=+..+|.. .++.+-=-+|.+.+-++-+= ...++.+-.....+|+..|.+||+ ++|-|+|.
T Consensus 302 qKLr~fied----------sDqNLKYlgLlam~KI~ktH------p~~Vqa~kdlIlrcL~DkD~SIRl---rALdLl~g 362 (877)
T KOG1059|consen 302 QKLRIFIED----------SDQNLKYLGLLAMSKILKTH------PKAVQAHKDLILRCLDDKDESIRL---RALDLLYG 362 (877)
T ss_pred HHHhhhhhc----------CCccHHHHHHHHHHHHhhhC------HHHHHHhHHHHHHHhccCCchhHH---HHHHHHHH
Confidence 556666654 44556555666666655442 234567778889999999999999 67889999
Q ss_pred hcC
Q 020839 246 TGS 248 (320)
Q Consensus 246 ~~~ 248 (320)
+..
T Consensus 363 mVs 365 (877)
T KOG1059|consen 363 MVS 365 (877)
T ss_pred Hhh
Confidence 843
No 89
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.85 E-value=1.5e+02 Score=32.12 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 020839 98 LASHAIGLLALTVGYGENSREILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHP 174 (320)
Q Consensus 98 lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~---s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~ 174 (320)
...+.+.+++.|+| .+++.+. +..++..+ .....|.+|++.|..++..-|..-.--..+++++-.
T Consensus 498 ail~~ip~la~q~~-----~~~~~~~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~---- 565 (759)
T KOG0211|consen 498 AILEYIPQLALQLG-----VEFFDEK---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAM---- 565 (759)
T ss_pred HHHHHHHHHHHhhh-----hHHhhHH---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHH----
Confidence 34459999999999 4566655 44444433 233788899999998888766433333344544444
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 175 KLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 175 ~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
+++ ++--..-+-+.+-.+|+-.+... + ..+..+|.+..+......+||+-+...+-.+-
T Consensus 566 -~~q------~~y~~R~t~l~si~~la~v~g~e-i---~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 566 -DLQ------DNYLVRMTTLFSIHELAEVLGQE-I---TCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred -hcC------cccchhhHHHHHHHHHHHHhccH-H---HHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 222 12223333444444555554442 2 23577899999998889999999988776553
No 90
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=56.51 E-value=1.9e+02 Score=27.67 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhc
Q 020839 54 EKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKS 133 (320)
Q Consensus 54 e~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d 133 (320)
|.+|..+..+|.+++..- -.+-..++++.+.++++--++.=+..-+.+++-..-+.+. .+....-..+.|.|.++++.
T Consensus 37 E~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 37 EAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN-SDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred HHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHHHH
Confidence 778888888888887532 1233467777788777644443444333433333322222 23556666777777777764
Q ss_pred C
Q 020839 134 G 134 (320)
Q Consensus 134 ~ 134 (320)
.
T Consensus 115 ~ 115 (339)
T PF12074_consen 115 A 115 (339)
T ss_pred H
Confidence 3
No 91
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.96 E-value=3e+02 Score=29.95 Aligned_cols=248 Identities=18% Similarity=0.124 Sum_probs=134.3
Q ss_pred cchhhhHHHHHHHhc-cch-hHHHHHHHHH----HHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHH---HHHHHHH
Q 020839 32 LEKDTLLDEALDALY-EKR-GSTREKALSS----IIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSRE---IALASHA 102 (320)
Q Consensus 32 ~~~~~~l~~~id~l~-eKr-ss~Re~~L~~----l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E---~~lA~~~ 102 (320)
+-...++.-.+..|. +-| ++.==-++.+ +.++.......++....+..++..+++.-.+.++.| +..|+.+
T Consensus 445 ~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 334456667777664 333 3332223333 334444443344555677888888888776655344 5677777
Q ss_pred HhHHhhhcCCCCChHHHHHHhHHH----HHHHhh----cCCC--h--HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q 020839 103 IGLLALTVGYGENSREILEESVAP----ISQALK----SGFD--S--SKIASLLECLAVITFVGGND-PEETERTMQIMW 169 (320)
Q Consensus 103 l~Ll~ltlg~~~~~~~i~~~~~~~----L~~~i~----d~s~--s--~~r~~~i~aLa~~~f~~~~~-~~~~~~~m~~l~ 169 (320)
++=+.-.... +.-.+...+.++ |.+.+. +-++ . ..-.-.|.+|+.+.-..+.+ .+....+|..|.
T Consensus 525 LmElIk~st~--~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lfl 602 (859)
T KOG1241|consen 525 LMELIKNSTD--DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFL 602 (859)
T ss_pred HHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 7766655442 122222222222 222333 1111 1 33334467777655554444 566678999999
Q ss_pred HhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc-CCCHHHHHHHHHHHHHHHHhcC
Q 020839 170 QIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 170 ~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~-s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.++.+ +.++.++.-|+-+.+-|+..+...=. .+.....|+|..=|. ..+.-|=.+ ++.|.=.+.|
T Consensus 603 ri~~s---------~~s~~v~e~a~laV~tl~~~Lg~~F~--kym~~f~pyL~~gL~n~~e~qVc~~---aVglVgdl~r 668 (859)
T KOG1241|consen 603 RIFES---------KRSAVVHEEAFLAVSTLAESLGKGFA--KYMPAFKPYLLMGLSNFQEYQVCAA---AVGLVGDLAR 668 (859)
T ss_pred HHHcC---------CccccchHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHHHHhhcchHHHHHHH---HHHHHHHHHH
Confidence 99977 25567777888888888887765321 223333444444442 234444443 5777777777
Q ss_pred CccccccccCCCCCChhhhhhhhhhHHHHHHHH-HHHHhhhcCCCcchhhhHHHHHHHHHHHHHHHhc
Q 020839 249 LEKFSSEAKGSNDGSREEYIHLQGLKGKILNQV-RNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEVS 315 (320)
Q Consensus 249 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l-~~La~d~s~K~~sKkdrk~qRs~FRdil~tvE~g 315 (320)
. .+++ ..+| -+++.++| +.|.+ .+-|| .=|-..-|.|-||--.|+..
T Consensus 669 a--L~~~--------i~py------~d~~mt~Lvq~Lss--~~~hR--~vKP~IlS~FgDIAlaIg~~ 716 (859)
T KOG1241|consen 669 A--LEDD--------ILPY------CDELMTVLVQCLSS--PNLHR--NVKPAILSVFGDIALAIGAD 716 (859)
T ss_pred H--HHhh--------hhhH------HHHHHHHHHHHccC--ccccc--cccchHHHHHHHHHHHHHHh
Confidence 5 2211 1222 34455444 33443 23333 23456678999998877653
No 92
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.88 E-value=1.3e+02 Score=25.49 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhc-----CCChHHHHHHHH
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKS-----GFDSSKIASLLE 145 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d-----~s~s~~r~~~i~ 145 (320)
-+.++.+-|+.+++.++.+|+.++-.+.-..|..-..+-.-.++..-|.+++.. .+...+|..++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 344667777778899999999999999888886322233335666778888863 133455544433
No 93
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.51 E-value=1e+02 Score=24.90 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHH
Q 020839 162 ERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (320)
Q Consensus 162 ~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEai 240 (320)
..+++++..++.... . ...+.+..++|....-.++.++...+.+ ...++.+..+|.+++. |.+|-|+|
T Consensus 81 ~~i~~~l~~~l~~~~-~-----~~~~~~~~~~L~~l~s~i~~~~~~~i~~---~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSS-S-----EANEELVKAALKCLKSWISWIPIELIIN---SNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHC-H-----CCHHHHHHHHHHHHHHHTTTS-HHHHHS---SSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-c-----ccHHHHHHHHHHHHHHHHHhCCHHHhcc---HHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 344566666654411 0 1236788888888888888776655543 2477888888855544 99998876
No 94
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.18 E-value=2.1e+02 Score=28.75 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=100.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHH-HHhHHHHHHHhhcCCCh--HHHHHHHHHHHH------
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL-EESVAPISQALKSGFDS--SKIASLLECLAV------ 149 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~-~~~~~~L~~~i~d~s~s--~~r~~~i~aLa~------ 149 (320)
.|+..+..-.+.|+++=+.+|.-++.-++.+-... .+|. ....|.|.++++++.-+ ..-.+||+-+++
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq---~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ---REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh---hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 47778888888888888889988888888765532 3333 34789999999988766 556678865543
Q ss_pred -----------HHHHcCCCHHHH-HHHHHHHHHhhcCC---------CCCcccc---CCCChHHHHHHHHHHHHHHhcCC
Q 020839 150 -----------ITFVGGNDPEET-ERTMQIMWQIVHPK---------LGSNVVA---TRPSAPIITAMVSAWSFLLTTMD 205 (320)
Q Consensus 150 -----------~~f~~~~~~~~~-~~~m~~l~~i~~~~---------~g~~~~~---~~~~~~v~~AAL~aW~lLlT~l~ 205 (320)
+-.+-+.|-+++ ......+|...-+. .|..+.. --+.|.-+-.-+++.--.|+.-+
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 333334444433 35556677765431 1211100 01233333344444444444433
Q ss_pred CCccchhhHH-hhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 206 GCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 206 ~~~~~~~~~~-~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
..+. .+++ ..+|.|.+++.+.+.+||=.|+++++=+-+-
T Consensus 408 ~~k~--~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 408 NDKE--ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccHH--HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 3221 2222 4579999999999999999999998877554
No 95
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=53.32 E-value=3.4e+02 Score=29.77 Aligned_cols=188 Identities=9% Similarity=0.112 Sum_probs=119.8
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
+.+...++.+..-.-+.|....+.+-+++......++-+.-.+.|++.++-.+.--+ .|-..-+..+++.+-.+|.
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt-t~d~vml~gfg~V~~~lg~--- 791 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT-TEDSVMLLGFGTVVNALGG--- 791 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc-cchhhhhhhHHHHHHHHhh---
Confidence 356666777777777778888887777777777777665566778888887776433 3333445666666666663
Q ss_pred hHHHHHHhHHHHHHHhh------cCCChHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCCCccccCCCChH
Q 020839 116 SREILEESVAPISQALK------SGFDSSKIASLLECLAVITFVGG-NDPEETERTMQIMWQIVHPKLGSNVVATRPSAP 188 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~------d~s~s~~r~~~i~aLa~~~f~~~-~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~ 188 (320)
..+|+|-+++. ....+.+|..++.-.+.++-+-. .+++ ..|..+--|.+-..| .+.|.
T Consensus 792 ------r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee---~~m~~lGvvLyEylg------eeypE 856 (1172)
T KOG0213|consen 792 ------RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE---KLMGHLGVVLYEYLG------EEYPE 856 (1172)
T ss_pred ------ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH---HHHHHhhHHHHHhcC------cccHH
Confidence 23344333332 22345788889888887776622 1222 234443333332223 26677
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 189 v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
+...-|.|-..+...+.-.+.. .-+.+.+|+|..+|.+.+.-|+-. +|+|+.=+
T Consensus 857 vLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrheKVqen---~IdLvg~I 910 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQEN---CIDLVGTI 910 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhHHHHHHH---HHHHHHHH
Confidence 8787777777777766554444 345688999999999999888865 56666544
No 96
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.78 E-value=96 Score=31.90 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHhhcCC-CCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH
Q 020839 138 SKIASLLECLAVITFVGGNDPEETERTMQ--IMWQIVHPK-LGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW 214 (320)
Q Consensus 138 ~~r~~~i~aLa~~~f~~~~~~~~~~~~m~--~l~~i~~~~-~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~ 214 (320)
..|..|+.+|+-+...+ ++.+. +|. .+..||..- |+ .+..|+.-|+.+-..++-.+..+.+. .+.
T Consensus 273 ~~r~~a~r~L~~~as~~---P~kv~-th~~~~ldaii~gL~D~-------~~~~V~leam~~Lt~v~~~~~~~~l~-~~~ 340 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGA---PDKVR-THKTTQLDAIIRGLYDD-------LNEEVQLEAMKCLTMVLEKASNDDLE-SYL 340 (533)
T ss_pred HHHHHHHHHHHHHhccC---cHHHH-HhHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHhhhhcchh-hhc
Confidence 67778888888766552 33332 222 344555431 22 33688888999988888888888776 344
Q ss_pred HhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 215 QQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 215 ~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
-...-++..+.++.+.++|.||=-...-+
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGAL 369 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 46667889999999999999986555444
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=52.72 E-value=2.7e+02 Score=29.84 Aligned_cols=98 Identities=9% Similarity=0.146 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchh
Q 020839 135 FDSSKIASLLECLAVITFV--GGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSK 212 (320)
Q Consensus 135 s~s~~r~~~i~aLa~~~f~--~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~ 212 (320)
..+.+|..++...|.++-+ +|+.......+=.++.+.+ | .+.|.+...-|.|-..+.+.+.-.... .
T Consensus 616 k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l----g------e~ypEvLgsil~Ai~~I~sv~~~~~mq-p 684 (975)
T COG5181 616 KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL----G------EDYPEVLGSILKAICSIYSVHRFRSMQ-P 684 (975)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc----C------cccHHHHHHHHHHHHHHhhhhcccccC-C
Confidence 3457888898888887777 3333333333333344422 3 377888888999988888877666554 4
Q ss_pred hHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 213 KWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 213 ~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
-+...+|.|..+|.+.+.-|... +|||+.=+
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~n---ti~lvg~I 715 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVAN---TIALVGTI 715 (975)
T ss_pred chhhccccccHhhhhhhHHHhhh---HHHHHHHH
Confidence 45688999999999998877654 56666555
No 98
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=50.70 E-value=1.3e+02 Score=24.14 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHH-HHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 020839 76 KFATLLHQCLSSIKRGSSREIALASH-AIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVIT 151 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~~E~~lA~~-~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~ 151 (320)
....++..+.++++.++..|..+|+- +++.++....-. .++ +...+..++...........++.||+.++
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~---l~~l~~~i~~~~~~~~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEV---LNALMESILKNWTQETVQRQALICLIVLC 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHH---HHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 34678889999999666567765555 888888777643 344 33455666666655543335666666444
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.81 E-value=1.3e+02 Score=32.28 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 020839 75 KKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVG 154 (320)
Q Consensus 75 ~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~ 154 (320)
+..+-+++.+.+++|-+.+-.+.-|+-+++-+- .++. ....-..+.+.|+.++. .+++.+.++|..+|..+.=.-
T Consensus 117 ~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~-~~~~---~~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 117 KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF-DIDP---DLVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh-cCCh---hhccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 345677788888888776666543333333322 1111 12223346677888887 455666677777776554443
Q ss_pred CC-C-----HHHH---------------HHHHHHHHHhhcCCCC-C--cc------ccCCCChHHHHHHHHHHHHHHhcC
Q 020839 155 GN-D-----PEET---------------ERTMQIMWQIVHPKLG-S--NV------VATRPSAPIITAMVSAWSFLLTTM 204 (320)
Q Consensus 155 ~~-~-----~~~~---------------~~~m~~l~~i~~~~~g-~--~~------~~~~~~~~v~~AAL~aW~lLlT~l 204 (320)
.+ . ..-+ ...|+++...+ +++. . .+ .-.-.+++++-+|+...--++-.+
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV-PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 21 0 1111 11222222211 1121 0 00 001245677777887776666665
Q ss_pred CCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 205 DGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 205 ~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
+. ++..+....-|.|..+|++.. +++-.|=.+|-++.+...
T Consensus 271 ~~--~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p 311 (734)
T KOG1061|consen 271 KQ--VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRP 311 (734)
T ss_pred HH--HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhCh
Confidence 55 444556677899999999988 999999999999999843
No 100
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.57 E-value=2.4e+02 Score=30.61 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=71.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC-CChHHHHHHhH
Q 020839 46 YEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG-ENSREILEESV 124 (320)
Q Consensus 46 ~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~-~~~~~i~~~~~ 124 (320)
--||.+.-...|.-+.+.+.+....+--.+-+.-++..++|+.-. +-...-.|++-++++-++.. +-.+.+|..+.
T Consensus 52 vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Es---kdk~VRfrvlqila~l~d~~~eidd~vfn~l~ 128 (892)
T KOG2025|consen 52 VKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTES---KDKKVRFRVLQILALLSDENAEIDDDVFNKLN 128 (892)
T ss_pred eccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccC---cchhHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 357766644445444444443333222222334444455554433 23333345555555545421 12456777777
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHH
Q 020839 125 APISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWS 198 (320)
Q Consensus 125 ~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~ 198 (320)
.-|..-+.|. .+.+|..|.-|| +.+-+++.++-.+.-+.+-.++.. | +++.|.-|||+.-.
T Consensus 129 e~l~~Rl~Dr-ep~VRiqAv~aL---srlQ~d~~dee~~v~n~l~~liqn-D--------pS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 129 EKLLIRLKDR-EPNVRIQAVLAL---SRLQGDPKDEECPVVNLLKDLIQN-D--------PSDEVRRAALSNIS 189 (892)
T ss_pred HHHHHHHhcc-CchHHHHHHHHH---HHHhcCCCCCcccHHHHHHHHHhc-C--------CcHHHHHHHHHhhc
Confidence 6666666654 456775655554 455544444445566666677755 3 66677777666543
No 101
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.50 E-value=12 Score=30.58 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHH-hhHHHHHhhhcCCCHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAA 236 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~~~~~~~~~~~-~~l~~l~~lL~s~d~~VRiAA 236 (320)
.-.+|..|..|.|. | .+...+++ .+++.|..||.+++.++.+++
T Consensus 63 Ld~~Ik~l~~La~~-P--~LYp~lv~l~~v~sL~~LL~HeN~DIai~v 107 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-P--ELYPELVELGAVPSLLGLLSHENTDIAIDV 107 (108)
T ss_pred HHHHHHHHHHccCC-h--hHHHHHHHcCCHHHHHHHHCCCCcceehcc
Confidence 35789999988875 3 23334443 578999999999999988764
No 102
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=48.81 E-value=75 Score=24.76 Aligned_cols=53 Identities=8% Similarity=0.030 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHH
Q 020839 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVI 150 (320)
Q Consensus 96 ~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~ 150 (320)
+..|+++++.+|-..+.. -..+...+...|.+.+.|+..+ ..+-.|+.+|+.+
T Consensus 23 Rd~AA~lL~~I~~~~~~~--~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 23 RDFAASLLAQICRKFSSS--YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred HHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999998853 3566777777888888888766 6666666666544
No 103
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=48.28 E-value=88 Score=26.54 Aligned_cols=67 Identities=7% Similarity=0.033 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa 148 (320)
.++.+-|+.+++..+.+|+.++-.++-..|..-..+-.-+++...|.+++.+.....+|..++.-+-
T Consensus 40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3555666667789999999999999988885322333445677778888888766666666655553
No 104
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=47.31 E-value=2.4e+02 Score=26.25 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=73.9
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCCChHHHHHH--hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 83 QCLSSIKRGS-SREIALASHAIGLLALTVGYGENSREILEE--SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 83 ~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~--~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
-++..++..+ +.-+..|.-+++-.+.. .-..++..+ ..+.+...+.++ ++..|..++.||.-++.-. ....
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf----~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~-en~~ 89 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAF----PFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVND-ENQE 89 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccC----hhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCCh-hhHH
Confidence 3444445443 43444444444443321 124555554 446677777774 5666667777776442211 1122
Q ss_pred HHHHHHH-HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHH
Q 020839 160 ETERTMQ-IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGE 238 (320)
Q Consensus 160 ~~~~~m~-~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGE 238 (320)
.+...+. .+..++.. +-+..+..++|..-+=| |..+.+ .+.+...+|.|..+|.+.+..+|.-+=.
T Consensus 90 ~Ik~~i~~Vc~~~~s~---------~lns~~Q~agLrlL~nL-tv~~~~---~~~l~~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSS---------PLNSEVQLAGLRLLTNL-TVTNDY---HHMLANYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred HHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHcc-CCCcch---hhhHHhhHHHHHHHHHcCChHHHHHHHH
Confidence 2221111 12333321 24457777777765555 222222 2455678999999999999999876655
Q ss_pred HHH
Q 020839 239 ALA 241 (320)
Q Consensus 239 aiA 241 (320)
.|.
T Consensus 157 ~L~ 159 (254)
T PF04826_consen 157 VLV 159 (254)
T ss_pred HHH
Confidence 443
No 105
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=45.51 E-value=1e+02 Score=27.03 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=33.2
Q ss_pred hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 212 KKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 212 ~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.+++..++.+.++.-+++..||.+|-+.|.++-.-|..
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv 41 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV 41 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC
Confidence 46678888988988899999999999999999887774
No 106
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=45.37 E-value=4.8e+02 Score=29.15 Aligned_cols=161 Identities=13% Similarity=0.043 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 77 FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 77 ~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
+.++...+.+.++...+.++..-..+++.+.-.++-. .----+..++|.|.+.+ +-++..+|.+..+++-+.+-..+.
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~-vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ-VLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH-hhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccc
Confidence 3455555555555333455555555555444333310 00011344555555544 334567777888888887777654
Q ss_pred CHHH-HHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHH
Q 020839 157 DPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIA 235 (320)
Q Consensus 157 ~~~~-~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiA 235 (320)
=..+ +--....+..+-.+ .. .....|.-+||++-.-|.+.+|...+. -+-...+..|...|+..-+=||.-
T Consensus 943 L~t~~~~Tlvp~lLsls~~--~~-----n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~e 1014 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSD--ND-----NNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKE 1014 (1030)
T ss_pred cchHHHhHHHHHHHhcCCC--CC-----cchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHH
Confidence 3222 22233334443322 11 113578889999999999989987666 344688899999999999999999
Q ss_pred HHHHHHHHHHhc
Q 020839 236 AGEALALILETG 247 (320)
Q Consensus 236 AGEaiALl~E~~ 247 (320)
|-.+=---|+++
T Consensus 1015 Av~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 1015 AVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhhhhhhcc
Confidence 887766655553
No 107
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.03 E-value=2.6e+02 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.++.+..+++.+-+. .. ....+.+..+|++.|..||.+|-.+|+-+
T Consensus 129 ~~p~vR~aal~al~~--------r~-----~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 129 SEPPGRAIGLAALGA--------HR-----HDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred CChHHHHHHHHHHHh--------hc-----cChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 566777788866665 10 13457888899999999999999999865
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=43.74 E-value=1.6e+02 Score=23.05 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=52.9
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHH--HHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREI--ALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~--~lA~~~l~Ll~ltlg 111 (320)
+.+++++..+.+.=--.|-.||..|.+++.++- +.......++..++..++-. +.. .-|.+.++.+|-..+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHCh
Confidence 478888999988888889999999999998887 23335678888899988743 233 456667777665544
No 109
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=43.27 E-value=4.4e+02 Score=29.34 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=86.6
Q ss_pred hHHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCC--CCC-------------
Q 020839 116 SREILEESVAPISQALK-SGFDSSKIASLLECLAVITFV-GGNDPEETERTMQIMWQIVHPK--LGS------------- 178 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~-d~s~s~~r~~~i~aLa~~~f~-~~~~~~~~~~~m~~l~~i~~~~--~g~------------- 178 (320)
++++..-+...|..+++ |+.-+.-+-+-|..+.+..|. .++|+.-+...-+++.+++... -|.
T Consensus 543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 45667777778888887 665555555667777777777 4456654445555555554321 121
Q ss_pred --ccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc-CCCHHHHHHHHHHHHHHHHhcC
Q 020839 179 --NVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 179 --~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~-s~d~~VRiAAGEaiALl~E~~~ 248 (320)
+.. +..+.+++.|+.--..++-.-|+. +...++.-++|.+..+.= ++|.+.--.|||++.-+.+..+
T Consensus 623 ~~~~~--~~~~~l~~~aidvLttvvr~tp~p-L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 623 QLNAD--KAPAGLCAIAIDVLTTVLRNTPSP-LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred cCccc--ccCchhhHHHHHHHHHHHhcCCCC-ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 111 234677888888777666665554 555677788888877655 6689999999999999988855
No 110
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=42.55 E-value=81 Score=26.12 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHH--hhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQ--QSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~--~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.++.+++-|++=-|-+.-..|... .+++ .+-.++++|+.++|.+||--|=.++-.+
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr---~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGR---NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGH---HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHH---HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567888889999999999988753 2222 3457899999999999999887776544
No 111
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=41.80 E-value=14 Score=26.75 Aligned_cols=24 Identities=4% Similarity=0.335 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhcccc
Q 020839 295 KKDLTSQRNLFKDILEFLEVSSYF 318 (320)
Q Consensus 295 Kkdrk~qRs~FRdil~tvE~g~~~ 318 (320)
.+.+.+++-.||.|.+.|..|.|+
T Consensus 34 ~~~~~~ek~~frsV~~AvqagIfv 57 (59)
T PF08499_consen 34 TRRRSEEKPKFRSVVHAVQAGIFV 57 (59)
T ss_pred hccccccchhHHHHHHHHHhccee
Confidence 455666788899999999999885
No 112
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=40.59 E-value=2.4e+02 Score=24.98 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC---HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh
Q 020839 60 IIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVGYGENSREILEESVAPISQALK 132 (320)
Q Consensus 60 l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~---~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~ 132 (320)
++.-|...+..+|+.....+|...+.+.+.-.. .++-.||+...--+++|+-.-+.--+.++++.|.+.+.++
T Consensus 65 IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~ 140 (174)
T PF04510_consen 65 IFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVK 140 (174)
T ss_pred HHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 344455455678888888899999999997653 3344799887766677776543334778888887766555
No 113
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.54 E-value=1.2e+02 Score=29.94 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH--------HHHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA--------VITFV 153 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa--------~~~f~ 153 (320)
..+++..++.+..|+.++++.++-..+|-+- +.+-.+.+.+++..++.|.+.- .|...+.||+ ++-++
T Consensus 10 ~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~---sr~d~~~~~~l~~~Ll~d~s~~-vrr~lA~aL~~~~~~Pr~l~~~L 85 (364)
T COG5330 10 QDLIRLLEEASSGERALAARVLAFASLQRPL---SREDMRQFEDLARPLLDDSSEE-VRRELAAALAQCETAPRALARAL 85 (364)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHHhhCccHH-HHHHHHHHHHhCCcCCHHHHHHH
Confidence 3466677777789999999999999999882 3445666677777766666544 4458888886 44455
Q ss_pred cCCCHHHHHHH-HH--------HHHHhhcCCCCC----ccccCCCChHHHHHHHHHH
Q 020839 154 GGNDPEETERT-MQ--------IMWQIVHPKLGS----NVVATRPSAPIITAMVSAW 197 (320)
Q Consensus 154 ~~~~~~~~~~~-m~--------~l~~i~~~~~g~----~~~~~~~~~~v~~AAL~aW 197 (320)
++ ++.++... +. -|-+|+.. .|. .|...++.+..++.+|-+-
T Consensus 86 a~-d~~~IAapll~rSpal~d~dLv~i~~~-~G~~h~raIarR~~ls~~v~~~Lv~~ 140 (364)
T COG5330 86 AE-DPISIAAPLLIRSPALTDDDLVDIARR-QGPAHARAIARRPSLSPLVIDALVER 140 (364)
T ss_pred hc-CChhHhHHHHHcCcCCChHHHHHHHHh-cCHHHHHHHHhccCCChHHHHHHHHc
Confidence 54 44444422 22 13334322 222 1222345556666666665
No 114
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=40.41 E-value=3.6e+02 Score=26.33 Aligned_cols=184 Identities=20% Similarity=0.214 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhh---hHHHhhhhHHHHHHHHHHhhcC----CCHHHHHHHHHHHhHHhhhcCCCCChHHHHH--
Q 020839 51 STREKALSSIIEAFNNTL---QHQFVEKKFATLLHQCLSSIKR----GSSREIALASHAIGLLALTVGYGENSREILE-- 121 (320)
Q Consensus 51 s~Re~~L~~l~~~l~~~~---~~~~v~~~~~tL~~~~~~~ikk----g~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-- 121 (320)
+.|..|...|.++|...- -.+-+.++...++..+.+-+.. |++.-..++.+++-+++.-+-..+-...+-+
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHH
Confidence 346777777777775544 3344455666666666666653 3333334444444444333321111111111
Q ss_pred --HhHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHH
Q 020839 122 --ESVAPISQALKSGFDS-SKIASLLECLAVITFVGGN-DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAW 197 (320)
Q Consensus 122 --~~~~~L~~~i~d~s~s-~~r~~~i~aLa~~~f~~~~-~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW 197 (320)
.+..+....+.+++.+ .....++.+|+...|=..- ..+.+..+...+..+-.+ -++..++.-+|...
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~---------~~s~si~~erL~i~ 158 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNR---------FPSKSIISERLNIY 158 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhcc---------CCchhHHHHHHHHH
Confidence 1233344455555555 4455667777766663211 122233334444443322 14558889999999
Q ss_pred HHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 198 SFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 198 ~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
--|+...|...... ...=+|-+...+=+....+|.+ +++++.|+..
T Consensus 159 ~~ll~q~p~~M~~~--~~~W~~~l~~~l~~~~k~ir~~---a~~l~~~~~~ 204 (372)
T PF12231_consen 159 KRLLSQFPQQMIKH--ADIWFPILFPDLLSSAKDIRTK---AISLLLEAKK 204 (372)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhhcchHHHHH---HHHHHHHHHH
Confidence 99999999877653 2233455555555778888887 4666666644
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.03 E-value=5.6e+02 Score=28.44 Aligned_cols=196 Identities=17% Similarity=0.105 Sum_probs=106.6
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHH-------------Hhhh-------------------hHHHHHHH
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQ-------------FVEK-------------------KFATLLHQ 83 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~-------------~v~~-------------------~~~tL~~~ 83 (320)
+.+.++|..++++-.-+|-.||..|...+.+++... ++.+ .-+++++-
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 478888888888888888888888888877443221 1110 01122221
Q ss_pred ----HHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCC
Q 020839 84 ----CLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 84 ----~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~---s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
-...=||...+.+..--.++.=++--.| +++...+.+|...+..+ ++..-|++.+..||.+|-..+.
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G------el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALG------ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 2222233323444433455555555556 34444445565555543 2446799999999988887542
Q ss_pred C-HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCC--ccchhhHHhhHHHHHhhhc-CCCHHH
Q 020839 157 D-PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC--SLDSKKWQQSISYFSTLLD-KDDRSI 232 (320)
Q Consensus 157 ~-~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~--~~~~~~~~~~l~~l~~lL~-s~d~~V 232 (320)
. .+..-++...+..+..+ | +++.+.=||++--..|+--+..- .+...++.+....+-.+.. .+|-.+
T Consensus 881 ~vsd~~~ev~~~Il~l~~~-d--------~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~ 951 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETT-D--------GSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL 951 (982)
T ss_pred hhhHHHHHHHHHHHHHHcc-C--------CchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 2 23445566666666655 4 44566667777666666544321 1111111222222222222 445667
Q ss_pred HHHHHHHHHHHHHh
Q 020839 233 RIAAGEALALILET 246 (320)
Q Consensus 233 RiAAGEaiALl~E~ 246 (320)
|+-|-.+|=.+--.
T Consensus 952 klhaql~leei~a~ 965 (982)
T KOG4653|consen 952 KLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777655443
No 116
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.30 E-value=2.8e+02 Score=24.70 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred cchhhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhh
Q 020839 32 LEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT 109 (320)
Q Consensus 32 ~~~~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~lt 109 (320)
.|-...|--+.|+|.|+.---|--|..++.+++.+.. .+=+.--...|+-.+.+++...+++=...+++++-.++..
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~-~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG-GEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4555688889999999999999999999998888711 1212233456666666666654433346777777766443
No 117
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=37.91 E-value=5.7e+02 Score=27.89 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHhhcC
Q 020839 96 IALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-MQIMWQIVHP 174 (320)
Q Consensus 96 ~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-m~~l~~i~~~ 174 (320)
+.+|.|.++++ + ..++.+.+.+++++.++|+.. -+|-.|+.|++ -+|-- |.+-..+. ...+....-.
T Consensus 109 R~~AlR~ls~l----~----~~el~~~~~~~ik~~l~d~~a-yVRk~Aalav~--kly~l-d~~l~~~~g~~~~l~~l~~ 176 (757)
T COG5096 109 RGFALRTLSLL----R----VKELLGNIIDPIKKLLTDPHA-YVRKTAALAVA--KLYRL-DKDLYHELGLIDILKELVA 176 (757)
T ss_pred HHHHHHHHHhc----C----hHHHHHHHHHHHHHHccCCcH-HHHHHHHHHHH--HHHhc-CHhhhhcccHHHHHHHHhh
Confidence 46777777763 3 248899999999999999876 55556655554 33311 12112111 1111111111
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHH
Q 020839 175 KLGSNVVATRPSAPIITAMVSAWSFL 200 (320)
Q Consensus 175 ~~g~~~~~~~~~~~v~~AAL~aW~lL 200 (320)
..+|.|+++|+.+..-+
T Consensus 177 ---------D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 177 ---------DSDPIVIANALASLAEI 193 (757)
T ss_pred ---------CCCchHHHHHHHHHHHh
Confidence 26778888888876543
No 118
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.24 E-value=2.6e+02 Score=32.80 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=79.4
Q ss_pred hhhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHH---hhcCCCHHHH-HHHHHHHhHHhhh
Q 020839 34 KDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLS---SIKRGSSREI-ALASHAIGLLALT 109 (320)
Q Consensus 34 ~~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~---~ikkg~~~E~-~lA~~~l~Ll~lt 109 (320)
..+-+++.+.+++.|==-.||++=-+|.++++++...++.++ ...+-..+.| -|| .+.+|+ ..++++++=+|+.
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~-lpelw~~~fRvmDDIK-EsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK-LPELWEAAFRVMDDIK-ESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 346888899999999888899999999999999998777653 2233333332 233 334565 5888888888887
Q ss_pred cCC---CCChHHHHHHhHHHHHH-HhhcCCChHHHHHHHHHHH
Q 020839 110 VGY---GENSREILEESVAPISQ-ALKSGFDSSKIASLLECLA 148 (320)
Q Consensus 110 lg~---~~~~~~i~~~~~~~L~~-~i~d~s~s~~r~~~i~aLa 148 (320)
+++ +..+.++.+.++|.|.. -+. ....++|.-||..+-
T Consensus 1115 ~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLM 1156 (1702)
T ss_pred hcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHH
Confidence 765 34488899999998764 333 444577777777664
No 119
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.18 E-value=1.2e+02 Score=29.08 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 187 APIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 187 ~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
..++.+-|.-=.+||-.+....+. ..+..|..||.++|.+|.++|=+.++.+-+.
T Consensus 2 ~elv~~IL~Ft~lLLEnc~NRslY-----sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 2 KELVLAILRFTRLLLENCGNRSLY-----SSSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcc-----ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 356778888888999998887776 4568999999999999999999999999887
No 120
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=35.04 E-value=5.9e+02 Score=27.19 Aligned_cols=212 Identities=16% Similarity=0.185 Sum_probs=109.6
Q ss_pred hHHHhhhhHHHHHHHHHHhhcC-CC-HHHHHHHHHHHhHHhhhcCCCCChHH---HHHH-------hHHHHHHHhh--cC
Q 020839 69 QHQFVEKKFATLLHQCLSSIKR-GS-SREIALASHAIGLLALTVGYGENSRE---ILEE-------SVAPISQALK--SG 134 (320)
Q Consensus 69 ~~~~v~~~~~tL~~~~~~~ikk-g~-~~E~~lA~~~l~Ll~ltlg~~~~~~~---i~~~-------~~~~L~~~i~--d~ 134 (320)
.+.|+-..+..|++.+++.-.. ++ ..=+.-+..+++-+..-..+ ..++. +|.- ...++.+++. |.
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~ 566 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVSDILAGFYDYTSKKLDECISVLGQILATEDQ 566 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 3556677788888888876643 33 23345566666665544432 11211 2221 2223333222 11
Q ss_pred CC-hHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchh
Q 020839 135 FD-SSKIASLLECLAVITFVGGNDPEETER-TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSK 212 (320)
Q Consensus 135 s~-s~~r~~~i~aLa~~~f~~~~~~~~~~~-~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~ 212 (320)
-. .+.....|.-|..+.---+.|.+++++ +|++|..+.++++.+. ....| -.|+ +-|.|.+.. .+. .
T Consensus 567 ~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~-----~~~dV-~~aI---sal~~sl~e-~Fe-~ 635 (858)
T COG5215 567 LLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTT-----AFGDV-YTAI---SALSTSLEE-RFE-Q 635 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCch-----hhhHH-HHHH---HHHHHHHHH-HHH-H
Confidence 11 134444454454444445567788887 9999999998742211 11122 1223 333444332 121 4
Q ss_pred hHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCC
Q 020839 213 KWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKG 292 (320)
Q Consensus 213 ~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K~ 292 (320)
++...+|+|..-|.+.|.-|-+.| +.|+-.++++ .+++ +..|.. ..+..|++.|..= .-+
T Consensus 636 y~~~fiPyl~~aln~~d~~v~~~a---vglvgdlant--l~~d--------f~~y~d--~~ms~LvQ~lss~-----~~~ 695 (858)
T COG5215 636 YASKFIPYLTRALNCTDRFVLNSA---VGLVGDLANT--LGTD--------FNIYAD--VLMSSLVQCLSSE-----ATH 695 (858)
T ss_pred HHhhhhHHHHHHhcchhHHHHHHH---HHHHHHHHHH--hhhh--------HHHHHH--HHHHHHHHHhcCh-----hhc
Confidence 456778888888888888777764 6666666665 2111 234421 1233333333221 212
Q ss_pred cchhhhHHHHHHHHHHHHHHHh
Q 020839 293 SAKKDLTSQRNLFKDILEFLEV 314 (320)
Q Consensus 293 ~sKkdrk~qRs~FRdil~tvE~ 314 (320)
+.=|-..-|.|-||--.|+.
T Consensus 696 --R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 696 --RDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred --cccchHHHHHHHHHHHHHhh
Confidence 23345678899999877754
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.95 E-value=6.5e+02 Score=28.00 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 020839 73 VEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITF 152 (320)
Q Consensus 73 v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f 152 (320)
+...+.-|++.|+++++-....=+.-++..+|.+|.-+..+ .++ +|-++..-+..+.+-+.....|-+|++-+.-+-.
T Consensus 841 ~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 841 VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 34466789999999999432222567777888877554432 233 5555555555555533334455566666554443
No 122
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.79 E-value=1.5e+02 Score=32.69 Aligned_cols=77 Identities=5% Similarity=0.116 Sum_probs=55.6
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH------HHHhhcCCCCCccccCCCChHHHHH
Q 020839 119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI------MWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 119 i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~------l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
+-.+++|+|-++...+.++.+|-.|+.|+.=++++.. .+.+..+++. +-++..+ .++.|+.-
T Consensus 552 F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~--seli~slLk~~~vSS~lAG~lss----------kD~~vlVg 619 (1051)
T KOG0168|consen 552 FGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN--SELIGSLLKNTNVSSHLAGMLSS----------KDLTVLVG 619 (1051)
T ss_pred HHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC--HHHHHHHHhcchHHHHHHhhhhc----------CCCeeEee
Confidence 4456889999999999999999999999987766653 4445554442 3333433 44566677
Q ss_pred HHHHHHHHHhcCCCC
Q 020839 193 MVSAWSFLLTTMDGC 207 (320)
Q Consensus 193 AL~aW~lLlT~l~~~ 207 (320)
||+--=+|.-.+|+.
T Consensus 620 ALQvAEiLmeKlpd~ 634 (1051)
T KOG0168|consen 620 ALQVAEILMEKLPDT 634 (1051)
T ss_pred hHHHHHHHHHHhHHH
Confidence 888888888888874
No 123
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=4.8e+02 Score=25.87 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=61.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhH-HHHHHHhh---cCCChHHHHHHHHHHHHHHHH---c
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESV-APISQALK---SGFDSSKIASLLECLAVITFV---G 154 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~-~~L~~~i~---d~s~s~~r~~~i~aLa~~~f~---~ 154 (320)
+....+|.-..+.=+-.|..++|.+..+.. +..+....- |...+++. |.+...+.-.+++||+.++-. -
T Consensus 307 dgsfEmiEmnDpdaieaAiDalGilGSnte----GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlk 382 (524)
T KOG4413|consen 307 DGSFEMIEMNDPDAIEAAIDALGILGSNTE----GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLK 382 (524)
T ss_pred HhhHHhhhcCCchHHHHHHHHHHhccCCcc----hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCC
Confidence 333344444345556678888988776655 344444444 34555554 333334555667777655433 2
Q ss_pred CCCHHH--HHHHHHHHHHhhcC---C-C--CCc-cccCCCChHHHHHHHHHHHHHHhc
Q 020839 155 GNDPEE--TERTMQIMWQIVHP---K-L--GSN-VVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 155 ~~~~~~--~~~~m~~l~~i~~~---~-~--g~~-~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.+...+ .++.|.++|--..+ | + |-. .....+.|.+++||+..+.-+...
T Consensus 383 peqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 383 PEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred hhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 222222 45566666542211 1 1 100 011247889999999876655543
No 124
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.40 E-value=8e+02 Score=28.24 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcCCCHHHH-HHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh--cCCChHHHHHHHHHHH--HHHH
Q 020839 78 ATLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYGENSREILEESVAPISQALK--SGFDSSKIASLLECLA--VITF 152 (320)
Q Consensus 78 ~tL~~~~~~~ikkg~~~E~-~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~--d~s~s~~r~~~i~aLa--~~~f 152 (320)
.+|+..+++.|....+.|. .-..+.++.+-.-+. +.+=.-+.+.|..++. |+..-..|.+.+..+| ++.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS-----~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~ 343 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELS-----ERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASE 343 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHH-----HHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 6677777777755444452 233333443333332 2222334455555555 4444477766666666 5556
Q ss_pred HcCCC-HHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHH
Q 020839 153 VGGND-PEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRS 231 (320)
Q Consensus 153 ~~~~~-~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~ 231 (320)
+-+.+ .+....+-+-+.+++.. -+. ..++-+..-+|+.|.-|...=.- ....+++.+.-...-|+..++=
T Consensus 344 l~d~e~~~~sk~~r~~~le~l~e-rl~-----Dvsa~vRskVLqv~~~l~~~~s~---p~~~~~eV~~la~grl~DkSsl 414 (1251)
T KOG0414|consen 344 LRDEELEEMSKSLRDELLELLRE-RLL-----DVSAYVRSKVLQVFRRLFQQHSI---PLGSRTEVLELAIGRLEDKSSL 414 (1251)
T ss_pred hcchhhhHHHHHHHHHHHHHHHH-Hhh-----cccHHHHHHHHHHHHHHHHccCC---CccHHHHHHHHHhcccccccHH
Confidence 65443 22222222223333322 111 26678899999999998876222 1245677888888889889999
Q ss_pred HHHHHHHHHHHHHHh
Q 020839 232 IRIAAGEALALILET 246 (320)
Q Consensus 232 VRiAAGEaiALl~E~ 246 (320)
||.+|-.-+.-+.+.
T Consensus 415 VRk~Ai~Ll~~~L~~ 429 (1251)
T KOG0414|consen 415 VRKNAIQLLSSLLDR 429 (1251)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999998877766554
No 125
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=32.15 E-value=26 Score=20.80 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.7
Q ss_pred hhHHHHHhhhcCCCHHHHHHH
Q 020839 216 QSISYFSTLLDKDDRSIRIAA 236 (320)
Q Consensus 216 ~~l~~l~~lL~s~d~~VRiAA 236 (320)
..+|+....|+..+..+|+|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRLAS 23 (24)
T ss_dssp THHHHHHHTT--HHHHHHHHH
T ss_pred cchhHHHhccCCHHHHHHHhc
Confidence 467999999999999999984
No 126
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.73 E-value=7.1e+02 Score=26.86 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhh-hcCCCHHHHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTL-LDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~l-L~s~d~~VRiAAGEaiALl~E 245 (320)
.+..+...+|+....++..+|-.-+. +..+|++..+ +..+++.|+..+--++|-+.+
T Consensus 401 ~~~~iQ~~~L~~lptv~e~iD~~~vk----~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 401 SDVQIQELALQILPTVAESIDVPFVK----QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred cchhhHHHHHHhhhHHHHhccHHHHH----HHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 56688889999999999998854443 4667887766 335678888777766665553
No 127
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=30.14 E-value=4.9e+02 Score=25.97 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=99.6
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHH-HhhhhHHHhhh--hHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAF-NNTLQHQFVEK--KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l-~~~~~~~~v~~--~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
-+--+|..|+.-....|+.+.=+|-++- -+..+.+||.. ..++|+..+..+-.. -.=..-|.-.++=+|=-=.+.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~--ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH--ISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch--HHHHHHhHHHHHHhhCCCCCC
Confidence 4455677777777777888765555432 22223455543 456666655522110 011111122222233211122
Q ss_pred CChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-----HHHhhcCCCCCccccCCCChH
Q 020839 114 ENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQI-----MWQIVHPKLGSNVVATRPSAP 188 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~-----l~~i~~~~~g~~~~~~~~~~~ 188 (320)
. .........|+|.++|... ++++...+++|++ |+..+..+.+...++. |.+..+ .+++.
T Consensus 236 P-~w~~isqalpiL~KLiys~-D~evlvDA~WAiS---YlsDg~~E~i~avld~g~~~RLvElLs----------~~sa~ 300 (526)
T COG5064 236 P-DWSNISQALPILAKLIYSR-DPEVLVDACWAIS---YLSDGPNEKIQAVLDVGIPGRLVELLS----------HESAK 300 (526)
T ss_pred C-chHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHH---HhccCcHHHHHHHHhcCCcHHHHHHhc----------Ccccc
Confidence 2 3445667889999988754 3344445666654 4433322222222221 222221 36677
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHH
Q 020839 189 IITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEAL 240 (320)
Q Consensus 189 v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEai 240 (320)
+.+-||.+.|-+.|--+...- .++ -.+++.|..+|++.--++|.-|.=+|
T Consensus 301 iqtPalR~vGNIVTG~D~QTq--viI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 301 IQTPALRSVGNIVTGSDDQTQ--VIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred ccCHHHHhhcCeeecCcccee--hheecccHHHHHHHhcChhhhhhhhhheee
Confidence 888899999998887665421 111 26789999999999889998775443
No 128
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.70 E-value=2.8e+02 Score=21.89 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=27.5
Q ss_pred CChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHH
Q 020839 114 ENSREILEESVAPISQALKSGFDS-SKIASLLECLAV 149 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~ 149 (320)
.+.++.+......|..+++|.+.+ ..|.+|-.+.-.
T Consensus 9 ~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~ 45 (93)
T COG1698 9 NDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEA 45 (93)
T ss_pred hhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 357888999999999999999988 666665444433
No 129
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=29.24 E-value=6.1e+02 Score=25.58 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHhhhhHHHHHHHHHHhhcCCC--HHHHH--HHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHH
Q 020839 70 HQFVEKKFATLLHQCLSSIKRGS--SREIA--LASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLE 145 (320)
Q Consensus 70 ~~~v~~~~~tL~~~~~~~ikkg~--~~E~~--lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~ 145 (320)
...+......|+..+.+.++++. +.|.. --.|++..+-=.+. .-...+...+...+..+++.++++.--.-+-.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~--p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL--PIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG--GGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 35566677889999999998764 34432 22233333222222 23677888888888888889999977778899
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHH----HHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCcc-----------
Q 020839 146 CLAVITFVGGN-DPEETERTMQI----MWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSL----------- 209 (320)
Q Consensus 146 aLa~~~f~~~~-~~~~~~~~m~~----l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~----------- 209 (320)
++|++.-+++. +++.+...-+. +..|+.. | -...+-=.++-.+.|+..-+...+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~-d---------V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L 164 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ-D---------VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL 164 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT-T----------TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 99988887664 55533333333 4444433 3 122222344555566655541111
Q ss_pred -chhhHH--hhHHHHHhhhcC
Q 020839 210 -DSKKWQ--QSISYFSTLLDK 227 (320)
Q Consensus 210 -~~~~~~--~~l~~l~~lL~s 227 (320)
....|+ ..+|.++.+|.+
T Consensus 165 l~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 165 LSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp TSGGGGGSTTTHHHHHHHHHH
T ss_pred cCcchhccCCCcCcHHHHHHH
Confidence 112333 457888888774
No 130
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.69 E-value=2.3e+02 Score=32.32 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred HHHHHHhHHHHHHHhhcC---CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 020839 117 REILEESVAPISQALKSG---FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~---s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AA 193 (320)
..+...+.|++..+++.+ +++..+++|-.|||=...+.+. =.+..|.+|..+.+. .++|-|.+.+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fces~l~llftimek---------sp~p~IRsN~ 981 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FCESHLPLLFTIMEK---------SPSPRIRSNL 981 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhc---------CCCceeeecc
Confidence 345667889999999865 4567887887777755555432 234567778888764 2555555555
Q ss_pred HHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 194 VSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 194 L~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
+-|-|=|+-..|. +++..-+.|...|...++.||..|+=.+..+
T Consensus 982 VvalgDlav~fpn------lie~~T~~Ly~rL~D~~~~vRkta~lvlshL 1025 (1251)
T KOG0414|consen 982 VVALGDLAVRFPN------LIEPWTEHLYRRLRDESPSVRKTALLVLSHL 1025 (1251)
T ss_pred hheccchhhhccc------ccchhhHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 5554444333222 2334457888999999999999999988754
No 131
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.36 E-value=2.7e+02 Score=23.65 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=38.0
Q ss_pred CCC-HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChH-HHHHHHHHHH
Q 020839 90 RGS-SREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSS-KIASLLECLA 148 (320)
Q Consensus 90 kg~-~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~-~r~~~i~aLa 148 (320)
+++ ..-+..+++++..-|+.=.. ..-|.+...+.|+...+...+.. .|..++-+|+
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~---r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSC---RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHH---HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHH---HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 444 44557778888887765432 45688999999999998776664 6666655553
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=27.27 E-value=5.2e+02 Score=24.17 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=21.0
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 216 QSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 216 ~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
...+.+.+.|...+..||-+|..+++-+..-
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 4456677777777777777777777666443
No 133
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.03 E-value=5e+02 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=18.2
Q ss_pred HhhHHHHHhhhcCCCHHHHHHHHHH
Q 020839 215 QQSISYFSTLLDKDDRSIRIAAGEA 239 (320)
Q Consensus 215 ~~~l~~l~~lL~s~d~~VRiAAGEa 239 (320)
+..+.-...||.|.+..|=+|+..+
T Consensus 286 ~lLL~stkpLl~S~n~sVVmA~aql 310 (968)
T KOG1060|consen 286 KLLLQSTKPLLQSRNPSVVMAVAQL 310 (968)
T ss_pred HHHHHhccHHHhcCCcHHHHHHHhH
Confidence 3445666778888888888887764
No 134
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.03 E-value=2.4e+02 Score=26.33 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 020839 125 APISQALKSGFD-SSKIASLLECLAVITFVGGNDPEETERTMQIMWQIV 172 (320)
Q Consensus 125 ~~L~~~i~d~s~-s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~ 172 (320)
..|++.+.++.. .=+|++|+.||+.++..+--+-+.+ .+++-.++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~v---i~~f~~ll 159 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEV---IQYFRELL 159 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHH
Confidence 567788888764 4789999999999998876554444 44444444
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.00 E-value=6.2e+02 Score=24.92 Aligned_cols=183 Identities=15% Similarity=0.075 Sum_probs=95.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHH
Q 020839 47 EKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAP 126 (320)
Q Consensus 47 eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~ 126 (320)
.|..-.|+.||+-++..+..+--++.+. ..++.++.........+=+..|...++=+++.-+. --+...-.++
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~----lv~~~gG~~~ 151 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPE----LVAECGGIRV 151 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH----HHHHcCCHHH
Confidence 3444559999987777665422222222 34444444444433333345666655555555431 1123334577
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHhhcCCC-CCc-----cccCCCChHHHHHHHHHH
Q 020839 127 ISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE---RTMQIMWQIVHPKL-GSN-----VVATRPSAPIITAMVSAW 197 (320)
Q Consensus 127 L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~---~~m~~l~~i~~~~~-g~~-----~~~~~~~~~v~~AAL~aW 197 (320)
|.+.+.|++.. .+-+-+.+++..+.....-... --++.+...|.... ... ..--.....++++.|..|
T Consensus 152 L~~~l~d~~~~---~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW 228 (371)
T PF14664_consen 152 LLRALIDGSFS---ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW 228 (371)
T ss_pred HHHHHHhccHh---HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC
Confidence 88888875444 2223333444444332111100 11333333332210 000 000013346778888899
Q ss_pred HHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 198 SFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 198 ~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.=|+...-+.- ..+..|++.|..++.++|-+ .+-++|++.+.
T Consensus 229 ~GLl~l~~~~~-------~~lksLv~~L~~p~~~ir~~---Ildll~dllri 270 (371)
T PF14664_consen 229 PGLLYLSMNDF-------RGLKSLVDSLRLPNPEIRKA---ILDLLFDLLRI 270 (371)
T ss_pred CceeeeecCCc-------hHHHHHHHHHcCCCHHHHHH---HHHHHHHHHCC
Confidence 77777654321 34567888899999988764 68899998775
No 136
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=26.96 E-value=5.8e+02 Score=26.65 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
..+.+++-.|.+.+-|....|-..+.--++.+.......++.+.|+.||+.|=-.+..|.
T Consensus 119 ~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 119 SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 456778888898888888877765543455566666777888999999999876655554
No 137
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=2.3e+02 Score=28.09 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCccchhhH----HhhHHHHHhhhcCCCHHHHHHHHHHHHH
Q 020839 185 PSAPIITAMVSAWSFLLTTMDGCSLDSKKW----QQSISYFSTLLDKDDRSIRIAAGEALAL 242 (320)
Q Consensus 185 ~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~----~~~l~~l~~lL~s~d~~VRiAAGEaiAL 242 (320)
+++.|..=|+.-.++++-.++...+. ++. .+.+|.+..++-.+|.+|-.||-|.|-=
T Consensus 94 ddasVKiLackqigcilEdcDtnaVs-eillvvNaeilklildcIggeddeVAkAAiesikr 154 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVS-EILLVVNAEILKLILDCIGGEDDEVAKAAIESIKR 154 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHH-HHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67778888999999999999876654 222 2678899999999999999999998753
No 138
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=26.27 E-value=3.5e+02 Score=28.58 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=67.9
Q ss_pred hccchhHH-HHHHHHHHHHHHHhh--h-------------hHHHhhh-----hHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 020839 45 LYEKRGST-REKALSSIIEAFNNT--L-------------QHQFVEK-----KFATLLHQCLSSIKRGSSREIALASHAI 103 (320)
Q Consensus 45 l~eKrss~-Re~~L~~l~~~l~~~--~-------------~~~~v~~-----~~~tL~~~~~~~ikkg~~~E~~lA~~~l 103 (320)
+.+|+... |...|++...+.-.. + +..|+.+ ....++..|...-..+.-+++.-|++++
T Consensus 337 ifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~a 416 (674)
T KOG2200|consen 337 IFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLA 416 (674)
T ss_pred eeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 67888755 999999887664322 1 1233332 2455666777666666667777788877
Q ss_pred hHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHcC
Q 020839 104 GLLALTVGYGENSREILEESVAPISQALKSGFD-SSKIASLLECLAVITFVGG 155 (320)
Q Consensus 104 ~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~-s~~r~~~i~aLa~~~f~~~ 155 (320)
.|+ +.+ + -.+..+.++-+|.+++..... --.-.+...|+|=-.|.+.
T Consensus 417 ill---LPD-e-NReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l~ 464 (674)
T KOG2200|consen 417 ILL---LPD-E-NREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHLN 464 (674)
T ss_pred HHh---CCc-c-cHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhhc
Confidence 664 332 2 468889999999999885433 2333456677776666644
No 139
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=23.64 E-value=2e+02 Score=24.63 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhcCCCcchhhhHHH-HHHHHHHHHHHHhcccc
Q 020839 274 KGKILNQVRNLSVEAGGKGSAKKDLTSQ-RNLFKDILEFLEVSSYF 318 (320)
Q Consensus 274 ~~~l~~~l~~La~d~s~K~~sKkdrk~q-Rs~FRdil~tvE~g~~~ 318 (320)
++.|.++|..|.++ .+...|=.++-- -.+=-+|+.||++|..|
T Consensus 43 q~~L~qrl~tLv~~--L~~l~~~s~k~n~i~IPleVl~yIddGrNP 86 (147)
T KOG3046|consen 43 QDALNQRLNTLVRG--LQDLDKLSSKLNDIQIPLEVLEYIDDGRNP 86 (147)
T ss_pred HHHHHHHHHHHHHH--hhhhHHHHHhhccccCcHHHHHHHhcCCCc
Confidence 46777888877774 333332222111 12234899999999876
No 140
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.60 E-value=4.6e+02 Score=28.03 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHH
Q 020839 48 KRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGENSREILEESVAP 126 (320)
Q Consensus 48 Krss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~ 126 (320)
++..+|..+|.-|..++++.+..-|.- --..|+..+++|++... .-=...|+-++..+.=.+.. .-...+-+++.+
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i-~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~--~l~~~L~~Lf~I 156 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKI-LQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS--SLGPHLPDLFNI 156 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHH-hcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc--hhhHHHHHHHHH
Confidence 355789999998888887766432211 11578899999998765 33334666665555545543 234566677777
Q ss_pred HHHHhh
Q 020839 127 ISQALK 132 (320)
Q Consensus 127 L~~~i~ 132 (320)
.-+++.
T Consensus 157 f~Rl~~ 162 (668)
T PF04388_consen 157 FGRLLS 162 (668)
T ss_pred HHHHHH
Confidence 777774
No 141
>PRK04330 hypothetical protein; Provisional
Probab=22.82 E-value=2.1e+02 Score=22.53 Aligned_cols=35 Identities=6% Similarity=0.130 Sum_probs=27.3
Q ss_pred ChHHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDS-SKIASLLECLAV 149 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s-~~r~~~i~aLa~ 149 (320)
+.++.++...-.|.+++.|.+.+ ..|.+|-.+...
T Consensus 6 ~~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~ 41 (88)
T PRK04330 6 DNEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEI 41 (88)
T ss_pred chHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 36789999999999999999998 666565444433
No 142
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=22.47 E-value=4.9e+02 Score=22.20 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhhcCCCH-HHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 020839 76 KFATLLHQCLSSIKRGSS-REIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVG 154 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg~~-~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~ 154 (320)
.+.+|++.+.+.+|.+.. .=+.-+.|++|.+.- +++ -.|+...+.+..... .++.. .+....-+ ..+
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP-----~~~k~~~~~~~~~~~--~~~~~--~~~~~~l~--~~~ 74 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDP-----YKHKSIQKSLDSKSS--ENSND--ESTDISLP--MMG 74 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCc-----HHHhcccccCCcccc--ccccc--cchhhHHh--hcc
Confidence 357899999999998753 334678888888542 221 233322222211000 00000 11111110 011
Q ss_pred C-CCHHHHH--HHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHH
Q 020839 155 G-NDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRS 231 (320)
Q Consensus 155 ~-~~~~~~~--~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~ 231 (320)
- ...++.. -.+..+..++.. +.-..-|.+++++-...+..+...- . .++...+|.|...+.+.+..
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D---------~sLs~~h~~vv~ai~~If~~l~~~c-v-~~L~~viP~~l~~i~~~~~~ 143 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRD---------PSLSSHHTAVVQAIMYIFKSLGLKC-V-PYLPQVIPIFLRVIRTCPDS 143 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHhcCcCc-h-hHHHHHhHHHHHHHHhCCHH
Confidence 1 0222222 334445555532 2333556677888888886654433 2 56778889988888855445
Q ss_pred HH
Q 020839 232 IR 233 (320)
Q Consensus 232 VR 233 (320)
.|
T Consensus 144 ~~ 145 (160)
T PF11865_consen 144 LR 145 (160)
T ss_pred HH
Confidence 44
No 143
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.99 E-value=5.1e+02 Score=22.20 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHh
Q 020839 137 SSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQ 216 (320)
Q Consensus 137 s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~ 216 (320)
+..|..++.++|=+++-- +.-++..+..+...+.. +++.|.-.|+..-+-|+.. +--+.. ..
T Consensus 2 ~~vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D----------~~~~VR~~al~~Ls~Li~~-d~ik~k----~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRD----------EDPLVRKTALLVLSHLILE-DMIKVK----GQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHc-Cceeeh----hh
Confidence 567899999999444432 22344455555555532 6788999999888888765 111222 23
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCcchh
Q 020839 217 SISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKK 296 (320)
Q Consensus 217 ~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~La~d~s~K~~sKk 296 (320)
.+..+..+|..+|.+||-.|-..+.=+.... .+ + .+ ...+.+.+..|....+.....+.
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~-~~--------------~---~i---~~~~~e~i~~l~~~~~~~~~~~~ 122 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKR-NP--------------N---II---YNNFPELISSLNNCYEHPVYGPL 122 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-cc--------------h---HH---HHHHHHHHHHHhCcccccccccc
Confidence 3488888888889999998876554333331 11 0 11 24456666666652111111234
Q ss_pred hhHHHHHHHHHHHHHHH
Q 020839 297 DLTSQRNLFKDILEFLE 313 (320)
Q Consensus 297 drk~qRs~FRdil~tvE 313 (320)
++.+-+.+++-++.++.
T Consensus 123 ~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 123 SREKRKKIYKFLLDFID 139 (178)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 45555555666666654
No 144
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=1.3e+03 Score=27.60 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHH-hHH-hhhcCCCCChHHHHHHhHHHHHHHhhcC
Q 020839 81 LHQCLSSIKRGS-SREIALASHAI-GLL-ALTVGYGENSREILEESVAPISQALKSG 134 (320)
Q Consensus 81 ~~~~~~~ikkg~-~~E~~lA~~~l-~Ll-~ltlg~~~~~~~i~~~~~~~L~~~i~d~ 134 (320)
+..-++.+.+.+ ..||.+|+.++ |++ ..-.+.+.+-++.+..+.|-|++.+..-
T Consensus 1238 l~s~Le~l~~sk~~~~Q~laAEilaG~i~g~k~~~f~e~~~~W~~L~p~L~~~~~~i 1294 (1710)
T KOG1851|consen 1238 LKSHLELLMASKKENEQLLAAEILAGLIHGSKHWDFEELDKLWNLLNPCLRQFFLNI 1294 (1710)
T ss_pred hhHHHHHHHhcccchHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444 68998888844 333 3445555566678888889998877644
No 145
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.02 E-value=1.3e+02 Score=25.92 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
-..|-++++.|.++++.......|.+++.+||++ |+=|+.
T Consensus 5 Y~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil---GALDP~ 44 (160)
T PF11865_consen 5 YLDYPELLDILLNILKTEQSQSIRREALRVLGIL---GALDPY 44 (160)
T ss_pred HHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cccCcH
Confidence 3568889999999999776678898999998875 555665
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=4.1e+02 Score=28.92 Aligned_cols=76 Identities=26% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHhhhhHHHhhhhHHHHHHHHHHhhcCC----CHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCCh-H
Q 020839 64 FNNTLQHQFVEKKFATLLHQCLSSIKRG----SSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-S 138 (320)
Q Consensus 64 l~~~~~~~~v~~~~~tL~~~~~~~ikkg----~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s-~ 138 (320)
+..++....+-++-..|++.+..+||+. .+.-..||+++++- +| +.+.-+.+.+-+.+++.+++.. -
T Consensus 92 qIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~n----iG----~re~~ea~~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 92 QIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIAN----IG----SREMAEAFADDIPKLLVSGSSMDY 163 (938)
T ss_pred HHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHh----hc----cHhHHHHhhhhhHHHHhCCcchHH
Q ss_pred HHHHHHHHH
Q 020839 139 KIASLLECL 147 (320)
Q Consensus 139 ~r~~~i~aL 147 (320)
+|.+++.||
T Consensus 164 vkqkaALcl 172 (938)
T KOG1077|consen 164 VKQKAALCL 172 (938)
T ss_pred HHHHHHHHH
Done!