Query 020839
Match_columns 320
No_of_seqs 111 out of 218
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 98.8 1.1E-06 3.8E-11 78.3 20.8 188 41-248 20-208 (242)
2 2qk1_A Protein STU2; STU2P, XM 98.5 6.2E-06 2.1E-10 74.8 17.0 192 41-248 21-223 (249)
3 1b3u_A Protein (protein phosph 98.0 0.00029 9.8E-09 69.1 17.7 101 44-154 95-195 (588)
4 1b3u_A Protein (protein phosph 97.9 0.00059 2E-08 66.8 19.5 183 43-245 171-353 (588)
5 4fdd_A Transportin-1; heat rep 97.9 0.00018 6.3E-09 75.0 16.0 193 39-248 259-474 (852)
6 4db8_A Armadillo-repeat protei 97.9 0.00064 2.2E-08 59.6 17.0 189 35-244 11-208 (252)
7 4ffb_C Protein STU2; tubulin f 97.9 0.00092 3.1E-08 60.7 17.9 189 43-245 16-212 (278)
8 1u6g_C TIP120 protein, CAND1; 97.9 0.0015 5.1E-08 70.9 22.4 193 36-246 6-205 (1230)
9 2jdq_A Importin alpha-1 subuni 97.8 0.00066 2.3E-08 64.3 16.5 189 38-245 22-221 (450)
10 4hxt_A De novo protein OR329; 97.7 0.0012 4.1E-08 57.3 16.1 186 38-244 4-198 (252)
11 1ibr_B P95, importin beta-1 su 97.7 0.0041 1.4E-07 58.8 21.1 189 45-248 226-440 (462)
12 1xqr_A HSPBP1 protein; armadil 97.6 0.0029 1E-07 58.7 18.0 196 31-246 23-239 (296)
13 4b8j_A Importin subunit alpha- 97.6 0.0017 5.9E-08 63.6 17.3 189 36-244 74-272 (528)
14 4db6_A Armadillo repeat protei 97.6 0.0022 7.5E-08 54.6 15.9 185 38-243 14-207 (210)
15 1u6g_C TIP120 protein, CAND1; 97.6 0.0036 1.2E-07 67.8 21.2 197 37-247 476-681 (1230)
16 4hxt_A De novo protein OR329; 97.6 0.0031 1.1E-07 54.6 16.6 192 37-248 45-244 (252)
17 3ltj_A Alpharep-4; protein eng 97.6 0.0055 1.9E-07 51.9 17.3 152 36-243 14-165 (201)
18 1qgr_A Protein (importin beta 97.6 0.0067 2.3E-07 62.4 21.0 199 36-246 128-358 (876)
19 3ltm_A Alpha-REP4; protein eng 97.5 0.0065 2.2E-07 51.9 17.1 153 35-243 18-170 (211)
20 1wa5_B Importin alpha subunit; 97.5 0.0025 8.4E-08 62.7 16.0 190 36-245 87-286 (530)
21 2jdq_A Importin alpha-1 subuni 97.5 0.0039 1.3E-07 59.0 16.8 192 37-245 65-263 (450)
22 2bpt_A Importin beta-1 subunit 97.5 0.0079 2.7E-07 61.7 20.1 202 37-247 598-813 (861)
23 3b2a_A TON_1937, putative unch 97.4 0.016 5.4E-07 52.5 18.9 184 36-248 33-218 (265)
24 1ibr_B P95, importin beta-1 su 97.4 0.0094 3.2E-07 56.3 18.6 199 36-246 128-358 (462)
25 1oyz_A Hypothetical protein YI 97.4 0.013 4.3E-07 52.4 18.5 96 37-151 24-119 (280)
26 3ul1_B Importin subunit alpha- 97.4 0.01 3.4E-07 58.5 19.0 192 37-244 58-260 (510)
27 4fdd_A Transportin-1; heat rep 97.4 0.0063 2.2E-07 63.3 18.1 194 37-246 216-430 (852)
28 4b8j_A Importin subunit alpha- 97.4 0.0076 2.6E-07 58.9 17.6 190 38-244 119-314 (528)
29 1qgr_A Protein (importin beta 97.4 0.016 5.5E-07 59.5 20.8 192 41-247 222-439 (876)
30 4db8_A Armadillo-repeat protei 97.3 0.0046 1.6E-07 54.0 14.4 185 39-243 57-249 (252)
31 1wa5_B Importin alpha subunit; 97.3 0.0075 2.6E-07 59.2 16.7 188 39-245 176-370 (530)
32 2bpt_A Importin beta-1 subunit 97.3 0.023 7.9E-07 58.2 20.9 187 45-246 233-441 (861)
33 3ltj_A Alpharep-4; protein eng 97.2 0.018 6.3E-07 48.6 16.4 151 37-243 46-196 (201)
34 3tpo_A Importin subunit alpha- 97.2 0.023 8E-07 56.0 18.9 194 36-245 76-280 (529)
35 1jdh_A Beta-catenin; beta-cate 97.1 0.069 2.4E-06 51.5 21.3 188 37-243 102-293 (529)
36 2z6h_A Catenin beta-1, beta-ca 97.1 0.062 2.1E-06 54.2 21.3 188 37-244 99-291 (644)
37 3now_A UNC-45 protein, SD10334 97.0 0.027 9.2E-07 59.3 18.1 183 41-245 500-694 (810)
38 3ltm_A Alpha-REP4; protein eng 97.0 0.041 1.4E-06 46.8 16.4 153 37-245 51-203 (211)
39 3opb_A SWI5-dependent HO expre 97.0 0.028 9.5E-07 58.7 17.6 180 48-244 469-682 (778)
40 1oyz_A Hypothetical protein YI 97.0 0.015 5.3E-07 51.8 14.0 56 82-150 26-81 (280)
41 2qk2_A LP04448P; mini spindles 96.8 0.21 7E-06 43.7 19.5 149 37-206 57-209 (242)
42 2z6g_A B-catenin; FULL-length, 96.7 0.16 5.3E-06 52.9 21.2 188 37-243 235-426 (780)
43 4db6_A Armadillo repeat protei 96.6 0.02 7E-07 48.4 11.3 146 82-245 15-167 (210)
44 2vgl_B AP-2 complex subunit be 96.4 0.25 8.5E-06 49.4 19.8 144 81-244 88-267 (591)
45 2vgl_B AP-2 complex subunit be 95.8 0.88 3E-05 45.4 20.4 190 37-246 122-312 (591)
46 2qk1_A Protein STU2; STU2P, XM 95.3 0.65 2.2E-05 41.4 15.5 154 84-248 21-178 (249)
47 1te4_A Conserved protein MTH18 95.3 0.092 3.1E-06 41.6 8.9 86 124-241 44-129 (131)
48 3nmw_A APC variant protein; AR 95.2 1.4 4.6E-05 41.6 18.0 190 40-246 131-335 (354)
49 3tpo_A Importin subunit alpha- 95.1 0.68 2.3E-05 45.4 16.4 187 42-247 257-451 (529)
50 1w63_A Adapter-related protein 94.9 0.4 1.4E-05 48.3 14.5 139 80-243 108-261 (618)
51 4ady_A RPN2, 26S proteasome re 94.9 1.1 3.6E-05 48.0 18.0 90 131-244 550-640 (963)
52 3now_A UNC-45 protein, SD10334 94.9 0.66 2.2E-05 48.8 16.4 195 36-244 290-523 (810)
53 3ul1_B Importin subunit alpha- 94.7 0.32 1.1E-05 47.7 12.7 186 39-243 146-343 (510)
54 1w63_A Adapter-related protein 94.7 0.89 3E-05 45.8 16.2 126 37-174 143-282 (618)
55 2z6h_A Catenin beta-1, beta-ca 94.6 1.4 4.8E-05 44.1 17.7 188 37-244 57-252 (644)
56 2z6g_A B-catenin; FULL-length, 94.5 1.8 6.3E-05 44.7 18.6 177 49-245 206-389 (780)
57 3nmw_A APC variant protein; AR 94.5 1.8 6.2E-05 40.7 16.9 154 80-243 128-290 (354)
58 3nmz_A APC variant protein; pr 94.3 3.1 0.00011 40.6 18.6 151 81-245 288-450 (458)
59 1jdh_A Beta-catenin; beta-cate 94.1 4.1 0.00014 38.8 19.6 186 39-244 62-255 (529)
60 3nmz_A APC variant protein; pr 94.1 3.3 0.00011 40.4 18.4 155 79-243 243-406 (458)
61 1xqr_A HSPBP1 protein; armadil 93.4 0.92 3.2E-05 41.7 12.3 133 94-244 55-195 (296)
62 2iw3_A Elongation factor 3A; a 92.6 6.7 0.00023 42.1 19.1 160 70-249 166-328 (986)
63 4ady_A RPN2, 26S proteasome re 90.9 3.1 0.0001 44.5 14.0 133 81-244 394-536 (963)
64 3tt9_A Plakophilin-2; cell adh 88.9 12 0.0004 33.1 15.0 144 81-243 10-178 (233)
65 3opb_A SWI5-dependent HO expre 88.5 5.3 0.00018 41.7 13.3 160 80-245 458-635 (778)
66 2vgl_A Adaptor protein complex 88.3 21 0.00071 35.8 17.6 128 91-248 50-180 (621)
67 1xm9_A Plakophilin 1; armadill 87.8 3.8 0.00013 39.3 11.3 149 81-244 285-448 (457)
68 3m1i_C Exportin-1; heat repeat 87.6 12 0.00043 39.6 16.1 134 99-248 433-572 (1049)
69 3l6x_A Catenin delta-1; cateni 87.6 8.3 0.00029 38.8 14.0 145 81-243 50-219 (584)
70 1wa5_C Importin alpha RE-expor 87.1 32 0.0011 36.0 25.6 133 97-246 379-526 (960)
71 1wa5_C Importin alpha RE-expor 86.8 15 0.0005 38.6 15.9 155 38-204 498-672 (960)
72 2x1g_F Cadmus; transport prote 86.5 16 0.00056 38.1 16.0 145 73-228 578-746 (971)
73 2iw3_A Elongation factor 3A; a 86.1 40 0.0014 36.1 19.1 194 37-249 15-208 (986)
74 1xm9_A Plakophilin 1; armadill 85.7 25 0.00086 33.5 17.6 126 82-225 5-136 (457)
75 2vgl_A Adaptor protein complex 83.1 40 0.0014 33.7 22.7 183 37-247 188-397 (621)
76 2x19_B Importin-13; nuclear tr 83.0 40 0.0014 34.9 17.1 114 117-246 440-557 (963)
77 1vsy_5 Proteasome activator BL 81.5 5.6 0.00019 42.7 9.9 183 51-249 484-668 (997)
78 3l6x_A Catenin delta-1; cateni 80.8 34 0.0012 34.4 14.9 158 79-244 308-475 (584)
79 4gmo_A Putative uncharacterize 80.4 5.7 0.00019 40.4 9.2 75 78-156 34-109 (684)
80 2x1g_F Cadmus; transport prote 79.9 49 0.0017 34.4 16.4 165 76-245 119-325 (971)
81 2x19_B Importin-13; nuclear tr 78.2 66 0.0022 33.2 16.7 157 37-206 530-718 (963)
82 3oc3_A Helicase MOT1, MOT1; re 76.4 12 0.00041 38.1 9.7 149 37-241 175-324 (800)
83 3gjx_A Exportin-1; transport, 75.5 25 0.00084 38.0 12.7 121 117-248 472-598 (1073)
84 4gmo_A Putative uncharacterize 74.9 42 0.0014 33.9 13.8 34 118-151 416-453 (684)
85 2of3_A ZYG-9; multifunctional 72.8 54 0.0018 29.5 22.1 178 41-246 51-237 (266)
86 3tjz_B Coatomer subunit gamma; 67.8 80 0.0027 29.5 13.7 141 81-244 106-278 (355)
87 2of3_A ZYG-9; multifunctional 67.2 71 0.0024 28.7 12.2 106 36-156 132-240 (266)
88 1te4_A Conserved protein MTH18 65.0 6.4 0.00022 30.5 4.1 94 117-243 7-100 (131)
89 3oc3_A Helicase MOT1, MOT1; re 64.8 15 0.0005 37.5 7.4 103 120-240 297-399 (800)
90 4ffb_C Protein STU2; tubulin f 64.1 73 0.0025 27.7 11.6 103 45-155 112-215 (278)
91 3tt9_A Plakophilin-2; cell adh 60.8 41 0.0014 29.5 9.0 100 123-237 9-116 (233)
92 3gs3_A Symplekin, LD45768P; he 60.1 94 0.0032 27.7 14.4 112 118-243 49-171 (257)
93 2db0_A 253AA long hypothetical 57.9 97 0.0033 27.1 23.0 179 36-246 32-211 (253)
94 3ebb_A Phospholipase A2-activa 54.8 1.2E+02 0.0041 27.6 11.4 101 51-153 163-264 (304)
95 1x5b_A Signal transducing adap 52.9 80 0.0027 26.0 9.1 69 79-147 52-120 (163)
96 1h2v_C 80 kDa nuclear CAP bind 51.2 96 0.0033 32.2 11.2 130 35-173 9-138 (771)
97 4hat_C Exportin-1; heat repeat 50.7 2.6E+02 0.0088 29.8 16.9 121 117-248 446-572 (1023)
98 3m1i_C Exportin-1; heat repeat 49.0 2.6E+02 0.0088 29.4 16.2 177 48-246 61-264 (1049)
99 3grl_A General vesicular trans 47.1 2.5E+02 0.0084 28.6 13.1 164 73-249 19-196 (651)
100 3dad_A FH1/FH2 domain-containi 46.5 1.9E+02 0.0064 27.0 19.9 208 37-311 119-336 (339)
101 1mhq_A ADP-ribosylation factor 43.9 1.3E+02 0.0043 24.4 11.2 86 81-168 40-131 (148)
102 3g2s_A C-terminal fragment of 43.6 1.3E+02 0.0045 24.4 8.8 106 37-148 11-122 (149)
103 4hat_C Exportin-1; heat repeat 43.5 1.9E+02 0.0064 30.9 12.3 120 118-248 491-621 (1023)
104 3tjz_B Coatomer subunit gamma; 42.9 2.1E+02 0.0072 26.6 17.8 140 77-248 66-205 (355)
105 1juq_A ADP-ribosylation factor 39.4 1.6E+02 0.0056 24.3 10.7 125 37-169 13-144 (171)
106 3b2a_A TON_1937, putative unch 36.6 2.4E+02 0.0081 25.4 15.4 145 36-203 75-219 (265)
107 3zyq_A Hepatocyte growth facto 34.2 49 0.0017 28.8 5.0 70 79-148 45-114 (226)
108 4atg_A TAF6; transcription, TF 32.1 2.4E+02 0.0081 24.1 10.1 93 53-148 62-158 (196)
109 1lsh_A Lipovitellin (LV-1N, LV 29.4 3.4E+02 0.012 28.9 11.5 176 37-242 392-595 (1056)
110 1h2v_C 80 kDa nuclear CAP bind 29.1 5E+02 0.017 26.8 12.5 101 70-174 79-186 (771)
111 1vdy_A Hypothetical protein (R 27.4 2.4E+02 0.0083 22.7 8.1 78 159-248 45-133 (140)
112 4g9j_C Synthetic peptide, seri 23.0 18 0.00061 20.4 0.0 22 291-312 2-23 (26)
113 1dvp_A HRS, hepatocyte growth 23.0 1E+02 0.0034 26.4 5.0 66 79-144 42-107 (220)
114 3l9t_A Putative uncharacterize 22.3 4E+02 0.014 23.4 15.8 166 37-240 34-202 (240)
115 3ldz_A STAM-1, signal transduc 21.0 3.1E+02 0.011 21.6 10.1 66 81-147 44-109 (140)
116 3grl_A General vesicular trans 20.1 6.9E+02 0.024 25.3 12.4 31 216-246 122-152 (651)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=1.1e-06 Score=78.29 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=140.3
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHhHHhhhcCCCCChHHH
Q 020839 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVGYGENSREI 119 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~i-kkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i 119 (320)
+.+.+..|.-+.|..++..|..++.... .+....+..++..+.+.+ |.....=+..|+++++.++-.+|.. -+..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~ 95 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHP--KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNY 95 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCC--CCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence 5566788999999999999998887632 122334467788888888 4555666689999999999888853 4566
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHH
Q 020839 120 LEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF 199 (320)
Q Consensus 120 ~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~l 199 (320)
...+.|.|...+.|. ...+|.+++.||..+.- ... +..+|+.+...+.. .++.+...++..-+.
T Consensus 96 ~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~--~~~---~~~ll~~l~~~l~~----------~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 96 ASACVPSLLEKFKEK-KPNVVTALREAIDAIYA--STS---LEAQQESIVESLSN----------KNPSVKSETALFIAR 159 (242)
T ss_dssp HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT--TSC---HHHHHHHHHHHTTC----------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHcC----------CChHHHHHHHHHHHH
Confidence 677888888888875 45677788777765432 222 44566666665533 457888888888888
Q ss_pred HHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 200 LLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 200 LlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
++....+.......+...+|.|..+|+..+.+||-+|-++|+.++....
T Consensus 160 ~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 160 ALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 7877654433346778999999999999999999999999999998755
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.47 E-value=6.2e-06 Score=74.79 Aligned_cols=192 Identities=14% Similarity=0.188 Sum_probs=134.3
Q ss_pred HHHHhccchhHHHHHHHHHHHH-HHHhhhhHHHh--hhhHHHHHHHHHHhh-cCCCHHHHHHHHHHHhHHhhhcC-CCCC
Q 020839 41 ALDALYEKRGSTREKALSSIIE-AFNNTLQHQFV--EKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVG-YGEN 115 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~-~l~~~~~~~~v--~~~~~tL~~~~~~~i-kkg~~~E~~lA~~~l~Ll~ltlg-~~~~ 115 (320)
+-+.+..|.-+.|.++|..|.. ++.... ++. ...+.++++.+.+.+ ++....-+..|+++++.++-.++ ++
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~--~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~-- 96 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTK--KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-- 96 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCC--CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCC--ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--
Confidence 3445677888889999999988 776521 222 234467899999999 66667778999999999998887 43
Q ss_pred hH-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 116 SR-EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN-DPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 116 ~~-~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~-~~~~-~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
-. .....+.|.|...+.|.. ..+|.++..||-.++-.... .... ...+|+.+...+.+ .++.+..+
T Consensus 97 f~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----------k~~~vk~~ 165 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----------KTPQIRME 165 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----------SSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----------CChHHHHH
Confidence 23 566678888888887765 34444444444322222211 1111 34567766666643 46788888
Q ss_pred HHHHHHHHHhcCCC--CccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 193 MVSAWSFLLTTMDG--CSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 193 AL~aW~lLlT~l~~--~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
++..-+-++...+. ..+. ..+ ...+|.|..+|..++.+||-+|-++++.++-..-
T Consensus 166 al~~l~~~~~~~~~~~~~l~-~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQ-RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHH-HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCcchhHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 88888888877654 2232 456 7899999999999999999999999999998744
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.97 E-value=0.00029 Score=69.07 Aligned_cols=101 Identities=11% Similarity=-0.059 Sum_probs=59.7
Q ss_pred HhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHh
Q 020839 44 ALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEES 123 (320)
Q Consensus 44 ~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~ 123 (320)
.+.......|..+...|.++...... ..+. ..++..+.+..+.....-+..|+++++.++-.++ ..+...+
T Consensus 95 l~~~~~~~vR~~a~~~L~~l~~~~~~-~~~~---~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-----~~~~~~l 165 (588)
T 1b3u_A 95 LATVEETVVRDKAVESLRAISHEHSP-SDLE---AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-----SAVKAEL 165 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCH-HHHH---HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----HHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHCCH-HHHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----HHHHHHH
Confidence 34566777899999888877654432 2222 2233333333333334555667777776665544 2456677
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVG 154 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~ 154 (320)
.|.|.+.+.|. ++.+|..++.+|+-++-..
T Consensus 166 ~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~ 195 (588)
T 1b3u_A 166 RQYFRNLCSDD-TPMVRRAAASKLGEFAKVL 195 (588)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 77777776653 5567777777777655443
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.95 E-value=0.00059 Score=66.80 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=122.8
Q ss_pred HHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHH
Q 020839 43 DALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEE 122 (320)
Q Consensus 43 d~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~ 122 (320)
..+.+.....|..++..|........... ....++..+...++-....=+..|+.+++-++-.++ .+.+...
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 242 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEAL 242 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC----HHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcHHh----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC----HHHHHHH
Confidence 34466677778888877766554322211 234566777777765555555678888888887776 3567788
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHh
Q 020839 123 SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (320)
Q Consensus 123 ~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT 202 (320)
+.|.+.+.+.|. +..+|..++.+|+.+.-..+.+ .-...++..+...+. | +++.+..+|..+++-+..
T Consensus 243 ~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~--d--------~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 243 VMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLMK--D--------CEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp THHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHHT--C--------SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHHHhC--C--------CcHHHHHHHHHHHHHHHH
Confidence 999999888654 4578889999998776544321 112344555555552 2 567899999999999998
Q ss_pred cCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 203 TMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 203 ~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.+++.......+...+|.+..+++..+..||.+|..+|.-+.+
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred HhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8876422223456777888888888888888888776655443
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.91 E-value=0.00018 Score=75.01 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=131.9
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhc---------CCC----HHH---------H
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIK---------RGS----SRE---------I 96 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ik---------kg~----~~E---------~ 96 (320)
.-++..+..+....|..+++.+..+........++......++..++..+. ++. +.| +
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr 338 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLR 338 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHH
Confidence 334445566777789999988877655444555566667788888887774 122 111 5
Q ss_pred HHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCC
Q 020839 97 ALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETERTMQIMWQIVHPK 175 (320)
Q Consensus 97 ~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~-~~~~~~m~~l~~i~~~~ 175 (320)
..|+++++.++-.+| +.++..+.|.|...+.+. +...|.+++.+||.++-.++... .-....+..+...+.
T Consensus 339 ~~a~~~L~~la~~~~-----~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-- 410 (852)
T 4fdd_A 339 KCSAAALDVLANVYR-----DELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-- 410 (852)
T ss_dssp HHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--
Confidence 678889998887776 257778889998888765 57888899999887653322110 012233333444331
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 176 LGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 176 ~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.+++.|..+|+.+-+-+...++..... .+....+|.|...|..++..||.+|..+|+-+.|...
T Consensus 411 --------d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 411 --------DKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp --------CSSHHHHHHHHHHHHHTHHHHHHSCTT-TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred --------CCCHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 266788888888888777766543332 4567889999999998999999999999999887643
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.89 E-value=0.00064 Score=59.59 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=125.0
Q ss_pred hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhh--HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCC
Q 020839 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQ--HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY 112 (320)
Q Consensus 35 ~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~--~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~ 112 (320)
...+..++..|.......|..++..|.+.+..... ..++. ...+..+.+.++.+++.-+..|+.+++-++..-.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGN- 86 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH---cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-
Confidence 35688888999888888999999999887765221 12222 3567788888888776666788888777764222
Q ss_pred CCChHHHHHH-hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCC
Q 020839 113 GENSREILEE-SVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPS 186 (320)
Q Consensus 113 ~~~~~~i~~~-~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~ 186 (320)
+....+.+. ..|.|.+.+.++ ++..|..|+.+|+-++. ........ .+..+..++.. ++
T Consensus 87 -~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~----------~~ 151 (252)
T 4db8_A 87 -EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSS----------PN 151 (252)
T ss_dssp -HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHGGGC----------SC
T ss_pred -HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhc---CCchHHHHHHHCCCHHHHHHHHhC----------CC
Confidence 223334433 788999999884 56777788888887643 22222122 23344444432 56
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 187 APIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 187 ~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
+.+...|+.+-+-|...-+.. ....+ ...+|.|..+|.+++..||..|..+|+-+.
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHH--HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChHH--HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 677777777766665432211 11111 367999999999999999999999988774
No 7
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00092 Score=60.67 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=114.9
Q ss_pred HHhccchhHHHHHHHHHHHHHHHhhhhH---HHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH--
Q 020839 43 DALYEKRGSTREKALSSIIEAFNNTLQH---QFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR-- 117 (320)
Q Consensus 43 d~l~eKrss~Re~~L~~l~~~l~~~~~~---~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~-- 117 (320)
+.|..|.=+.|.+||+.|.+.+...... +.....+..+...+.+.++-....=+..|+.++..++-.++......
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 6899999999999999999988765432 11112234455666677753334444567777777776665421111
Q ss_pred --HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 020839 118 --EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (320)
Q Consensus 118 --~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~ 195 (320)
.+...+.|.|..-+-..+....|..++.++-.+........ .+++.+...+. ..+|.+.++++.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~----~~~e~l~~~l~----------~Knpkv~~~~l~ 161 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT----QSVELVIPFFE----------KKLPKLIAAAAN 161 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH----HHHHHHGGGGG----------CSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHh----------ccCHHHHHHHHH
Confidence 22333444443322122345667777777765555544322 22333333232 267888888888
Q ss_pred HHHHHHhcCCCCccch-hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 196 AWSFLLTTMDGCSLDS-KKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 196 aW~lLlT~l~~~~~~~-~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.-.-++.......+.. ..+...++.+..+|++.|.+||-+|-+.+.-+|=
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8887877655544432 2445667788899999999999999998888874
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.85 E-value=0.0015 Score=70.87 Aligned_cols=193 Identities=10% Similarity=0.059 Sum_probs=139.2
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
..+...++.+..--...|..|+..|.+.+..... .+-......++..+.+.+....++-+..|+++++-++-.++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~---- 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK---- 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC----
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC----
Confidence 3577788888877788899999988887755422 11123345777778888875556777889998888776554
Q ss_pred hHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhcCCCCCccccCCCChH
Q 020839 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGND-------PEETERTMQIMWQIVHPKLGSNVVATRPSAP 188 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~-------~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~ 188 (320)
+.....+.+.|...+.|+.. ..|..++.+|+-++-..+.. ..-...++..+...+.. .+++.
T Consensus 81 -~~~~~~i~~~Ll~~l~d~~~-~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---------~~~~~ 149 (1230)
T 1u6g_C 81 -EYQVETIVDTLCTNMLSDKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---------QEDVS 149 (1230)
T ss_dssp -HHHHHHHHHHHHHHTTCSSS-HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---------CSCHH
T ss_pred -HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---------CCchH
Confidence 35567788888888776544 55888899998665544432 11345677777776642 15578
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 189 IITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 189 v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
+...|+.+|+-++...+.. +. .+....++.|...|.+++..||.+|..+|+.+.+.
T Consensus 150 ~~~~al~~l~~~~~~~~~~-l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGL-LV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSS-CT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhHhH-HH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 8999999999998766542 22 34578899999999999999999999999998765
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.80 E-value=0.00066 Score=64.32 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=125.0
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhh---hHHHhhhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHhHHhhhcCCC
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL---QHQFVEKKFATLLHQCLSSIKRG-SSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~---~~~~v~~~~~tL~~~~~~~ikkg-~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
+...+..+.......|+.++..|.+++.... ....+.. ..++..+.+.++.+ .+.-+..|+++++-++..-.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~--~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-- 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST--PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-- 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTS--TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHc--CCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--
Confidence 5566777766667789999999998876322 1222211 15777788888887 56667788888877764211
Q ss_pred CChHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCCh
Q 020839 114 ENSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 114 ~~~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
+....+. ....|.|.+.+.++ ++..|..|+.+|+-++.-. .+.... .+..+..++.. ..++
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~~l~~---------~~~~ 164 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS---TMCRDYVLDCNILPPLLQLFSK---------QNRL 164 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHHTTS---------CCCH
T ss_pred HHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC---HHHHHHHHHCCCHHHHHHHhcC---------CCCH
Confidence 1122232 35789999998874 6678888889988776432 221111 23344444432 2567
Q ss_pred HHHHHHHHHHHHHHhcC-CCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTM-DGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l-~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.+...|+.+++-|...- +.... ......+|.|..+|.++|..||..|..+|.-+.+
T Consensus 165 ~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 165 TMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 88888888888777654 22221 3346889999999999999999999998887754
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.74 E-value=0.0012 Score=57.26 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=120.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
+...+..+.......|..++..|.++..... ...++. ...+..+.+.++.+++.-+..|+.+++-++..-. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD---AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EA 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH---CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HH
Confidence 5566777777777889999988888776553 222222 3567778888888776667788888887764322 11
Q ss_pred hHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCChHH
Q 020839 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 116 ~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
...+.+ ...|.|.+.+.++ +...|..|+.+|+-++. ..++.... .+..+..++.. +++.+
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~ 144 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIAS---GPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV 144 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHcC----------CCHHH
Confidence 223333 3678888888854 46777788888877664 22332222 23334444432 55778
Q ss_pred HHHHHHHHHHHHhcCCCCccchhh-HHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTMDGCSLDSKK-WQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~~~~~~~~~-~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
...|+.+-+-|...-+.. .. .+ -...+|.|..+|.+++..||..|..+|.-+.
T Consensus 145 ~~~a~~~L~~l~~~~~~~-~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 145 QKEAARALANIASGPDEA-IK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHHTTSCHHH-HH-HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHH-HH-HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888877777765542221 01 11 1357999999999999999999999888774
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.74 E-value=0.0041 Score=58.80 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=124.3
Q ss_pred hccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhc-------------
Q 020839 45 LYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTV------------- 110 (320)
Q Consensus 45 l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~-tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltl------------- 110 (320)
+.......|..++..|..+....+ +++..... .++..+..+++...+.=+..|+..+.-++-..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 334455668888888877776553 23333344 66777777776544333456666555554321
Q ss_pred ------CCCCChHHHHHHhHHHHHHHhhcC------CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCC
Q 020839 111 ------GYGENSREILEESVAPISQALKSG------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGS 178 (320)
Q Consensus 111 ------g~~~~~~~i~~~~~~~L~~~i~d~------s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~ 178 (320)
....-.......+.|.|.+.+.+. .+...|.+++.+|+.++-..+. .-+..++.++...+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~---- 377 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKN---- 377 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTC----
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcC----
Confidence 000011223466778887777542 1236788999999977766553 2234566666665532
Q ss_pred ccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 179 NVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 179 ~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.++.+.-+|+.+.+-+....+...+. ..+...+|.+..+|.+++..||.+|..+|.-+.+...
T Consensus 378 ------~~~~~r~aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 378 ------PDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp ------SSHHHHHHHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred ------CChHHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 56889999999999998866543333 3456889999999999999999999999999988743
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.65 E-value=0.0029 Score=58.72 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=121.8
Q ss_pred ccchhhhHHHHHHHhccc----------hh--HHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHH-hhcCCCHHHH
Q 020839 31 QLEKDTLLDEALDALYEK----------RG--STREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLS-SIKRGSSREI 96 (320)
Q Consensus 31 ~~~~~~~l~~~id~l~eK----------rs--s~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~-~ikkg~~~E~ 96 (320)
+.|+.+.+++++..|... .. ..|+.+|..|.......- ...|+. .--+..++. .++.+.+.=+
T Consensus 23 ~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~---~G~l~~Lv~~lL~s~~~~vr 99 (296)
T 1xqr_A 23 QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQ---LSGMHLLVGRYLEAGAAGLR 99 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHH---TTHHHHHHHTTTTCSSHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHH---cCCHHHHHHHHHcCCCHHHH
Confidence 355667899999988653 11 238888877776554322 222322 223455666 8887765556
Q ss_pred HHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHH
Q 020839 97 ALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQ 170 (320)
Q Consensus 97 ~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~ 170 (320)
..|+.+++-++-.-. .....+.+ ...|+|.+++...+....|..|++||+-++- +....... .+..|..
T Consensus 100 ~~Aa~~Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~---~~~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 100 WRAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR---EQEAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc---CCcHHHHHHHHCCCHHHHHH
Confidence 788888887763211 11222333 4779999999866567778888898886542 22222221 2334444
Q ss_pred hhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 171 IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 171 i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
++.+ +++.+...|+.+.+-|... ++... ..++ ...+|.|+.+|.++|..||..|-.+|+-|...
T Consensus 175 lL~~----------~d~~v~~~A~~aLs~L~~~-~~~~~-~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 175 AMQQ----------QVQKLKVKSAFLLQNLLVG-HPEHK-GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHS----------SCHHHHHHHHHHHHHHHHH-CGGGH-HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcC----------CCHHHHHHHHHHHHHHHhC-ChHHH-HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4433 5567777777666666665 22211 1222 26799999999999999999999999887654
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.65 E-value=0.0017 Score=63.58 Aligned_cols=189 Identities=12% Similarity=0.142 Sum_probs=125.2
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhh---hHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTL---QHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~---~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg 111 (320)
..+...+..|.......|..++..|.+++.... ...++. ..++..+.+.++.++ +.-+..|+.+++-++. +
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~---~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~ 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ---SGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--G 148 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH---TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH---CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--C
Confidence 357788888877777789999999988876543 223332 356677777787765 5556778888877774 2
Q ss_pred CCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCC
Q 020839 112 YGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRP 185 (320)
Q Consensus 112 ~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~ 185 (320)
..+....+.+ ...|.|.+++.++ +...|..|+.+|+-++.- ++.-... .+..+..++.. ..
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL~~---------~~ 215 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQLNE---------HT 215 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTCCT---------TC
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHHhc---------CC
Confidence 1111222332 4788899988874 567888999999988642 2221111 22233333321 25
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 186 SAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 186 ~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
++.+...|+.+.+-|...-+.... .....++|.|..+|.++|.+||..|..+|+-+-
T Consensus 216 ~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 216 KLSMLRNATWTLSNFCRGKPQPSF--EQTRPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCCH--HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 567777777777766665433222 345688999999999999999999998887764
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.64 E-value=0.0022 Score=54.60 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=118.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.......+.......|..++..|..+..... ...++. ...+..+.+.++.+++.-+..|+.+++-++..-. +.
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~ 88 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID---AGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQ 88 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--HH
Confidence 3345556677778889999988887663322 112222 3567778888888776667778888777663221 11
Q ss_pred hHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCCChHH
Q 020839 116 SREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 116 ~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
...++ ....|.|.+.+.++ +...|..|+.+|+-++. .+.+..... +..+..++.+ +++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v 154 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSS----------PNEQI 154 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHc---CCHHHHHHHHHcCcHHHHHHHHcC----------CCHHH
Confidence 22333 23678898988776 46677778888876654 333333222 3334444432 45678
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
...|+.+-+-|...-+... ..+. ...+|.|..+|.+.+..||..|..+|.-+
T Consensus 155 ~~~a~~aL~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQK--QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888777777665422211 1222 25789999999999999999999999876
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.63 E-value=0.0036 Score=67.84 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=134.5
Q ss_pred hHHHHHHHhccchh--HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCC--
Q 020839 37 LLDEALDALYEKRG--STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGY-- 112 (320)
Q Consensus 37 ~l~~~id~l~eKrs--s~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~-- 112 (320)
.+..+++.+.++.. ..|..++..+...+...- ++........++..+.+++.....+-+..|+.+++-++-.+|.
T Consensus 476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~ 554 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS-PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD 554 (1230)
T ss_dssp HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC-GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC-HHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc
Confidence 33444455556543 678888888777665332 2212224456777777778765544445567777777766664
Q ss_pred ---CCChHHHHHHhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCCCCccccCCCCh
Q 020839 113 ---GENSREILEESVAPISQALKS-GFDSSKIASLLECLAVITFVGGNDP-EETERTMQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 113 ---~~~~~~i~~~~~~~L~~~i~d-~s~s~~r~~~i~aLa~~~f~~~~~~-~~~~~~m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
+......++.+.|.|.+.+.. ..+...|..|+.|||.++-.+|... ..+..+|..+...+.. .
T Consensus 555 ~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~----------e-- 622 (1230)
T 1u6g_C 555 QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN----------E-- 622 (1230)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS----------S--
T ss_pred cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc----------c--
Confidence 123456788899998888863 3456899999999999888866432 2345667766665532 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 020839 188 PIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (320)
....+++.+++.+........+. ..+...+|.|...|..++..+|.+|.++++-+....
T Consensus 623 ~~r~~~~~al~~i~~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 623 ITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp SHHHHHHHHHHHHTTCSSCCCCH-HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhCccccchH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 23456788888887765444443 677889999999999999999999999999998764
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.60 E-value=0.0031 Score=54.56 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=120.5
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+...+..+.......|..++..|.++..... ....+. ....+..+.+.++.+++.=+..|+.+++-++..-. +.
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 120 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EA 120 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HH
Confidence 45556666776667778888887777655422 122221 13456777888887765556778888877774221 11
Q ss_pred hHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCChHH
Q 020839 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 116 ~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
...+.+ ...|.|.+.+.++. ...+..|+.+|+-++. ..++.... .+..+..++.+ +++.+
T Consensus 121 ~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v 186 (252)
T 4hxt_A 121 IKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIAS---GPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV 186 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHc---CCHHHHHHHHHCcCHHHHHHHHCC----------CCHHH
Confidence 233333 36788888887654 5667778888876653 23332222 33344454432 55788
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 190 ITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
...|+.+.+-|...-+. ....+. ...+|.|.++|.+++..||..|-.+|+-+.....
T Consensus 187 ~~~a~~~L~~l~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 187 QKEAARALANIASGPTS--AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHTTSBHH--HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 88888777776652111 111111 2578999999999999999999999999987644
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.56 E-value=0.0055 Score=51.94 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=106.9
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.....+|..|..+....|..++..|...-. ...++.+.+.++.+.+.-+..|+++++-+ +.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~--- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQI----GD--- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC---
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC---
Confidence 467788999999999999999977664211 13345566777766666667777777654 32
Q ss_pred hHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 020839 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~ 195 (320)
....|.|.+.+.| .++.+|..++.+|+-+ + +.+. +..+...+. .+++.|..+|+.
T Consensus 75 -----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~---~--~~~~----~~~L~~~l~----------d~~~~vr~~a~~ 129 (201)
T 3ltj_A 75 -----ERAVEPLIKALKD-EDGWVRQSAAVALGQI---G--DERA----VEPLIKALK----------DEDWFVRIAAAF 129 (201)
T ss_dssp -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGGG----HHHHHHHTT----------CSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh---C--cHHH----HHHHHHHHc----------CCCHHHHHHHHH
Confidence 1356778887776 4678899999999864 2 2322 233333332 266788888887
Q ss_pred HHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 196 aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
+.+-+-. ...++.|..+|.+++..||.+|-++|+-+
T Consensus 130 aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 130 ALGEIGD------------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHTC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7766521 26779999999999999999999999876
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.56 E-value=0.0067 Score=62.37 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=125.5
Q ss_pred hhHHHHHHHhccc--hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEK--RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eK--rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg--~~~E~~lA~~~l~Ll~ltlg 111 (320)
+.+...+..+... ....|+.+|..+..++.. +.++.+......++..+.++++.+ +..-+..|+++++-++-.++
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQD-IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-cCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555 667799999877776653 223445566788889999999876 45667888898887665444
Q ss_pred CCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCH-HHHH-HHHHHHHHhhcCCCCCccccCCCChHH
Q 020839 112 YGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETE-RTMQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 112 ~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~-~~~~-~~m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
..-........+.+.+.+.+.+ .+...|..++.+|+-+.-....-. .-+. .++++++..+. ..++.+
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~v 275 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK----------SDIDEV 275 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT----------CSSHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc----------CCchHH
Confidence 2101111112366777666543 345788888898886665433211 1222 45555555442 256788
Q ss_pred HHHHHHHHHHHHhcCC-------------------CCccchhhHHhhHHHHHhhhc-------CCCHHHHHHHHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTMD-------------------GCSLDSKKWQQSISYFSTLLD-------KDDRSIRIAAGEALALI 243 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~-------------------~~~~~~~~~~~~l~~l~~lL~-------s~d~~VRiAAGEaiALl 243 (320)
...|+..|.-+..... ........+...+|.+...|. +++..+|.+|..++..+
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 9999999998876421 111111234566777777764 34678999999999988
Q ss_pred HHh
Q 020839 244 LET 246 (320)
Q Consensus 244 ~E~ 246 (320)
.+.
T Consensus 356 ~~~ 358 (876)
T 1qgr_A 356 ATC 358 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.51 E-value=0.0065 Score=51.91 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=106.8
Q ss_pred hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC
Q 020839 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 35 ~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
...+...+..|..+....|..++..|...-. ...++.+.+.++.+.+.-+..|+++++-+. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~-- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D-- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----C--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C--
Confidence 3467788888888999999999977664211 234455667777666666677777776643 1
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
....|.|.+.+.| .++.+|..++.+|+-+ + +.+. +..+...+. .+++.|..+|+
T Consensus 80 ------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~---~--~~~~----~~~L~~~l~----------d~~~~vr~~a~ 133 (211)
T 3ltm_A 80 ------ERAVEPLIKALKD-EDGWVRQSAAVALGQI---G--DERA----VEPLIKALK----------DEDWFVRIAAA 133 (211)
T ss_dssp ------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGGG----HHHHHHHTT----------CSSHHHHHHHH
T ss_pred ------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHh---C--cHHH----HHHHHHHHh----------CCCHHHHHHHH
Confidence 2356777777765 4567888999999865 2 2222 333344442 26678888888
Q ss_pred HHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 195 SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.+.+-+- . ...+|.|..+|++++..||.+|-++|+-+
T Consensus 134 ~aL~~~~----~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 134 FALGEIG----D--------ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHC----C--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcC----C--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8877651 1 25779999999999999999999999876
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.49 E-value=0.0025 Score=62.68 Aligned_cols=190 Identities=12% Similarity=0.093 Sum_probs=125.4
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhh--h-hHHHhhhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNT--L-QHQFVEKKFATLLHQCLSSIKRG-SSREIALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~--~-~~~~v~~~~~tL~~~~~~~ikkg-~~~E~~lA~~~l~Ll~ltlg 111 (320)
..+..++..|.......|..++..|.+++... . ....+. ..++..+.+.++.+ .+.-+..|+.+++-++....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~---~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQ---AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH---TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHH---CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 35677778887767778999999998887642 1 122222 35677888888877 55566778888877764221
Q ss_pred CCCChHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhhcCCCCCccccCCC
Q 020839 112 YGENSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE-----RTMQIMWQIVHPKLGSNVVATRP 185 (320)
Q Consensus 112 ~~~~~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~-----~~m~~l~~i~~~~~g~~~~~~~~ 185 (320)
+....+. ....|.|.+.+.++ +...|..|+.+|+-++.- +++... ..+..+..++.. .
T Consensus 164 --~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~----------~ 227 (530)
T 1wa5_B 164 --AQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGD---STDYRDYVLQCNAMEPILGLFNS----------N 227 (530)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHGGGS----------C
T ss_pred --HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC---CccchHHHHHcCcHHHHHHHhcc----------C
Confidence 1122222 45788999988863 567888888998877632 221111 123334444432 4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 186 SAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 186 ~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
++.+...|+.+.+-|...-.+.. ........+|.|..+|.++|..||..|..+|.-+..
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788888887777776542221 123456889999999999999999999999887753
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.49 E-value=0.0039 Score=58.98 Aligned_cols=192 Identities=10% Similarity=0.056 Sum_probs=120.9
Q ss_pred hHHHHHHHhccc-hhHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC
Q 020839 37 LLDEALDALYEK-RGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 37 ~l~~~id~l~eK-rss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
.+...+..+... ....|..++..|.++..... ...++. ..++..+.+.++.+++.=+..|+.+++-++.....
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~- 140 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ---AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM- 140 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH-
Confidence 455555666555 56678888877776665321 112221 35777888888877766667888888877753221
Q ss_pred CChHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 020839 114 ENSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGN--DPEETERTMQIMWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 114 ~~~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~--~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
....+. ..+.|.|.+.+.+..+...|..++.+|+-++..... ...-+...+..+..++.. +++.+.
T Consensus 141 -~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----------~~~~v~ 209 (450)
T 2jdq_A 141 -CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV----------SDTDVL 209 (450)
T ss_dssp -HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC----------CCHHHH
T ss_pred -HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc----------CCHHHH
Confidence 122233 357899999998767778888999999877754311 112223445555555533 446677
Q ss_pred HHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 191 TAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 191 ~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
..|+.+.+-|....+.. . .... ...+|.|..+|.+++..||.+|..+|+-+..
T Consensus 210 ~~a~~~L~~l~~~~~~~-~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 210 ADACWALSYLSDGPNDK-I-QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHHHHHTSSSHHH-H-HHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCcHH-H-HHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 77766665554432111 1 1111 3579999999999999999999999987743
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.47 E-value=0.0079 Score=61.74 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=131.0
Q ss_pred hHHHHHHHhccchh-HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEKRG-STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrs-s~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+..++..+....+ ..|+.++..+-.+.. ..-.+| ......++..+.+.++....+-+..|..+++-++-.+|. .
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~-~~~~~~-~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~ 673 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAA-SLGKGF-EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--D 673 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHH-HHGGGG-HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--G
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHH-HHhhhH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--h
Confidence 33344444544444 678887765543332 222222 224466777888888644445566788888888888773 3
Q ss_pred hHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhhcCCCCCccccCCCC-----hH
Q 020839 116 SREILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSNVVATRPS-----AP 188 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s-~s~~r~~~i~aLa~~~f~~~~~~~~-~~~~m~~l~~i~~~~~g~~~~~~~~~-----~~ 188 (320)
-......+.|.|.+.+.+.. +...|..++.|++-++-..+.+... +..+|..+...+..+.|. + .++ ..
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--~--d~d~~~~~~~ 749 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPEN--G--TLEALDYQIK 749 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSS--S--SHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC--C--ChHHHHHHHH
Confidence 55667788888888888763 4688999999999877776654433 335566565555432221 0 011 35
Q ss_pred HHHHHHHHHHHHHhcCCCC--ccchhhHHhhHHHHHhhhcCC----CHHHHHHHHHHHHHHHHhc
Q 020839 189 IITAMVSAWSFLLTTMDGC--SLDSKKWQQSISYFSTLLDKD----DRSIRIAAGEALALILETG 247 (320)
Q Consensus 189 v~~AAL~aW~lLlT~l~~~--~~~~~~~~~~l~~l~~lL~s~----d~~VRiAAGEaiALl~E~~ 247 (320)
+..+++.+|+-++..+... .+. .++...++.|...+... +..||.+|..+|.-+....
T Consensus 750 vr~~~l~~~~~i~~~l~~~~~~~~-~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLHDKPEALF-PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHG-GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 7789999999999887642 222 34556667776777553 8899999999999998863
No 23
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.43 E-value=0.016 Score=52.48 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=138.2
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHh--hhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNN--TLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~--~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~ 113 (320)
.++.-.+..|++|-+.++.++|..|-+++.. ..+.. ..+..+++.+++-.|....+=..-|.|++..+.-+.+-
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~---~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL- 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM---MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM- 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-
Confidence 3788888899999999999999998888876 33322 24567888888888755444457899999988776665
Q ss_pred CChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 020839 114 ENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAM 193 (320)
Q Consensus 114 ~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AA 193 (320)
+++-|..+...|+.+++ ..+...+-.++..||.+ =+. ...-..++++..++.+ .+..+.+||
T Consensus 109 --~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-kv~----~~~~~V~~~l~sLl~S----------kd~~vK~ag 170 (265)
T 3b2a_A 109 --GSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-QPL----EDSKLVRTYINELVVS----------PDLYTKVAG 170 (265)
T ss_dssp --CHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-CBS----CCCHHHHHHHHHHHTC----------SSHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-Ccc----cchHHHHHHHHHHHhC----------CChhHHHHH
Confidence 46789999999999999 55666777888999988 222 1245678888898855 678999999
Q ss_pred HHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 194 VSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 194 L~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
|.+..=+.+.-.+. +++...+..+.++|.++|+-++- .+|..+.++.-
T Consensus 171 l~~L~eia~~S~D~----~i~~~I~~eI~elL~~eD~~l~e---~aLd~Le~ils 218 (265)
T 3b2a_A 171 FCLFLNMLNSSADS----GHLTLILDEIPSLLQNDNEFIVE---LALDVLEKALS 218 (265)
T ss_dssp HHHHHHHGGGCSSC----CCGGGTTTTHHHHHTCSCHHHHH---HHHHHHHHHTT
T ss_pred HHHHHHhhcccCCH----HHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHc
Confidence 98765555544333 44567788899999999999886 45777777644
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.42 E-value=0.0094 Score=56.27 Aligned_cols=199 Identities=13% Similarity=0.072 Sum_probs=118.1
Q ss_pred hhHHHHHHHhccc--hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCC--CHHHHHHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEK--RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG--SSREIALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eK--rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg--~~~E~~lA~~~l~Ll~ltlg 111 (320)
+.+...+..+... ....|+.+|..|..++... .++++......++..+.++++.. ++.=+..|+++++-+.-.+.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC-CchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555 5677999998887766532 23344555678899999999876 44334667776665432222
Q ss_pred CCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCH-HHHH-HHHHHHHHhhcCCCCCccccCCCChHH
Q 020839 112 YGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDP-EETE-RTMQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 112 ~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~-~~~~-~~m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
...+...+...+.++|.+.+.+ .+...|..++.+|+.+.-...... .-+. .+++++...+.. .++.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~v 275 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEV 275 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC----------SSHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CchHH
Confidence 1000111222346666665543 456788888999886664432110 0111 334444443322 56788
Q ss_pred HHHHHHHHHHHHhcC-------------------CCCccchhhHHhhHHHHHhhhc-------CCCHHHHHHHHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTM-------------------DGCSLDSKKWQQSISYFSTLLD-------KDDRSIRIAAGEALALI 243 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l-------------------~~~~~~~~~~~~~l~~l~~lL~-------s~d~~VRiAAGEaiALl 243 (320)
...|+..|+-+.... ....+....+...+|.+...|. .++..+|.+|+.+|..+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 899999999887653 1111111234566777777763 23468999999999998
Q ss_pred HHh
Q 020839 244 LET 246 (320)
Q Consensus 244 ~E~ 246 (320)
.+.
T Consensus 356 ~~~ 358 (462)
T 1ibr_B 356 ATC 358 (462)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 25
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.42 E-value=0.013 Score=52.39 Aligned_cols=96 Identities=8% Similarity=0.001 Sum_probs=62.0
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+...+..|.......|..++..|.+.-. ...+..+.+.++...+.-+..|+.+++-+ |...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~~~-- 85 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KICK-- 85 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CCCT--
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----cccc--
Confidence 56677788888888889998876664321 23455666677766666667777776653 3211
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVIT 151 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~ 151 (320)
.....+.|.|...+....++.+|..++.+|+-+.
T Consensus 86 -~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 86 -KCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp -TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 1233455666654444557788889999998765
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.39 E-value=0.01 Score=58.55 Aligned_cols=192 Identities=10% Similarity=0.124 Sum_probs=115.8
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhh---HHHhhhhHHHHHHHHHHhhcCCCHHH-HHHHHHHHhHHhhhcCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQ---HQFVEKKFATLLHQCLSSIKRGSSRE-IALASHAIGLLALTVGY 112 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~---~~~v~~~~~tL~~~~~~~ikkg~~~E-~~lA~~~l~Ll~ltlg~ 112 (320)
.+++++..+.-.-...+..|...++++|+..-. ...+. .-++..+.+.++++...+ +.-|+.+++=++ .|.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~---~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nia--s~~ 132 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR---AGLIPKFVSFLGKTDCSPIQFESAWALTNIA--SGT 132 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHH---TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHH--TSC
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH---CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHh--cCC
Confidence 578888888777777788999999999865432 22222 346778888888765334 456777777666 343
Q ss_pred CCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCCC
Q 020839 113 GENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPS 186 (320)
Q Consensus 113 ~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~~ 186 (320)
.+....|.+ ...|.|.+.+.++ +...|..|+.||+-++.- +++--... +..+..++...+.. ...
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d---~~~~r~~v~~~G~i~~Ll~lL~~~~~~-----~~~ 203 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGD---GSAFRDLVIKHGAIDPLLALLAVPDLS-----TLA 203 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTCSSCGG-----GSC
T ss_pred HHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCChHHHHHHHHhccch-----hhh
Confidence 222344544 3679999988764 457777899999877632 22211111 23344444331111 111
Q ss_pred hHHHHHHHHHHHHHHhcCCCC-ccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 187 APIITAMVSAWSFLLTTMDGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 187 ~~v~~AAL~aW~lLlT~l~~~-~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
..+...| +|++--...... ...-......+|.|..+|.+++.+||..|..+|+-+-
T Consensus 204 ~~~~~~a--~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 204 CGYLRNL--TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHHHHH--HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2222222 233322221111 1111344678999999999999999999998887764
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.37 E-value=0.0063 Score=63.33 Aligned_cols=194 Identities=8% Similarity=-0.001 Sum_probs=128.4
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+...+..+.++....|..++..|..+....+ +++......++..+.+.++...+.=+..|+..+.-++=........
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRM--DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44445555677888889999998887776543 4555566778888888887544333456665554443110000000
Q ss_pred HHHHHHhHHHHHHHh-----------hcC----------CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 020839 117 REILEESVAPISQAL-----------KSG----------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPK 175 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i-----------~d~----------s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~ 175 (320)
...+..+.|+|.+.+ .|. .....|..++.+|+.++-..+. +-+..++.++...+.+
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~~l~~~l~~~l~~- 370 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLPHILPLLKELLFH- 370 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcC-
Confidence 113446677776665 231 1124677889999877776552 3344677777776643
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 176 LGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 176 ~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
+++.+..+|+.+.+-+...++. .+. ..+...+|.+..+|..++..||.+|..+|+-+.+.
T Consensus 371 ---------~~~~~R~aa~~alg~i~~~~~~-~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 371 ---------HEWVVKESGILVLGAIAEGCMQ-GMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp ---------SSHHHHHHHHHHHHHTTTTTHH-HHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999998877654 232 45678899999999999999999999999877764
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.36 E-value=0.0076 Score=58.93 Aligned_cols=190 Identities=14% Similarity=0.081 Sum_probs=120.3
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC
Q 020839 38 LDEALDALYEKR-GSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 38 l~~~id~l~eKr-ss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
+...+..|.... ...|..++..|.++..... ...++. ...+..+.+.++.+++.=+..|+.+++-++..-..
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-- 193 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID---HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-- 193 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH--
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh---CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh--
Confidence 444455555544 5668888877776665322 112221 24667777888877665567788888777642111
Q ss_pred ChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 115 NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGG-NDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 115 ~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~-~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
....+.+ ...|+|.+.+....+...+..++.+|+-++.-.. ....-....+..+..++.+ +++.+...
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~ 263 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS----------NDEEVLTD 263 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC----------CCHHHHHH
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC----------CCHHHHHH
Confidence 1122322 4778888888766777888889999987776532 2222233455556665533 56788888
Q ss_pred HHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
|+.+.+-|...-+ .... .++ ...+|.|..+|.+++..||..|-.+|+-+.
T Consensus 264 a~~aL~~l~~~~~-~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 264 ACWALSYLSDGTN-DKIQ-AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp HHHHHHHHTSSCH-HHHH-HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCH-HHHH-HHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 8888877764322 1111 112 257999999999999999999999987764
No 29
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.35 E-value=0.016 Score=59.53 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=123.9
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhc---------
Q 020839 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTV--------- 110 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~-tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltl--------- 110 (320)
+...+.......|..++..|..++..++. ++..... .++..+..+++...+.=+..|+..+.-++-..
T Consensus 222 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 299 (876)
T 1qgr_A 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQ--YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSGG--GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcc
Confidence 33445555667799999888877765542 2333344 67777777775433322445555554444221
Q ss_pred ----C------CCCChHHHHHHhHHHHHHHhhcC------CChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 020839 111 ----G------YGENSREILEESVAPISQALKSG------FDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHP 174 (320)
Q Consensus 111 ----g------~~~~~~~i~~~~~~~L~~~i~d~------s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~ 174 (320)
+ ...-....++.+.|.|.+.+... .+...|.+++.+|+.++-..+. .-+..++.++...+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKN 377 (876)
T ss_dssp HHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHTTC
T ss_pred ccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHHHccC
Confidence 0 00001223467778887777532 2237788899999877766542 2244566666555532
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 020839 175 KLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 175 ~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (320)
.++.+.-+|+.+++-+...+++..+. .++...+|.+...|..++..||.+|..+|+-+.+..
T Consensus 378 ----------~~~~~r~~a~~~l~~i~~~~~~~~~~-~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 378 ----------PDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp ----------SSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred ----------CChHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence 56889999999999888776533333 456788999999999999999999999999888863
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.34 E-value=0.0046 Score=53.98 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=112.7
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
...+..+.......|..++..|.++..... ....+. ....+..+.+.++.+++.=+..|+.+++-++..-. ....
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~ 132 (252)
T 4db8_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQ 132 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc--hHHH
Confidence 344555666666678888877766654221 111111 12467778888888775556677777776653221 1102
Q ss_pred HHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 118 EILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 118 ~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
.+.+ ...|.|.+.+.++ +...|..++.+|+-++. .+.+..... +..+..++.. +++.+..
T Consensus 133 ~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~ 198 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQIQAVIDAGALPALVQLLSS----------PNEQILQ 198 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTCHHHHHHGGGC----------SSHHHHH
T ss_pred HHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc---CChHHHHHHHHCCCHHHHHHHHCC----------CCHHHHH
Confidence 3333 3778999988765 55677778888776653 233333222 2334444432 5678888
Q ss_pred HHHHHHHHHHhcCCCCccchhhHH-hhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 192 AMVSAWSFLLTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~~~~~~~~~-~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.|+.+.+-|...-+. ....+.+ ..+|.|..+|.+.+..||..|..+|.-+
T Consensus 199 ~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 199 EALWALSNIASGGNE--QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHHhcCCHH--HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888887777643221 1112222 4789999999999999999999888644
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.28 E-value=0.0075 Score=59.16 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=118.8
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
...+..+.......|+.++..|.++..... ..+.+.. ..++..+.+.++.++..=+..|+.+++-++..-++. ...
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~ 252 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ--CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-PDW 252 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-CCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH--cCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-CcH
Confidence 334444555566678888877777664322 1122211 245667777777655555567888888777544222 234
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 118 EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
.+...+.|.|.+++.++ +...+..++.+|+-++. ...+..... +..+..++.. +++.+...
T Consensus 253 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~v~~Lv~lL~~----------~~~~v~~~ 318 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSM-DTETLVDACWAISYLSD---GPQEAIQAVIDVRIPKRLVELLSH----------ESTLVQTP 318 (530)
T ss_dssp HHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHS---SCHHHHHHHHHTTCHHHHHHGGGC----------SCHHHHHH
T ss_pred HHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhC---CCHHHHHHHHhcCcHHHHHHHHCC----------CChhhHHH
Confidence 56678899999998765 46777788888776552 223322222 2234444422 56788888
Q ss_pred HHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
|+.+.+-+.+.-+.. ...++ ...+|.|..+|.+++..||.+|..+|+-+-.
T Consensus 319 a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQ--TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHTTSCHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHH--HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 988888777543221 11112 2678999999999999999999999988754
No 32
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.28 E-value=0.023 Score=58.22 Aligned_cols=187 Identities=11% Similarity=0.090 Sum_probs=124.0
Q ss_pred hccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCC-----------
Q 020839 45 LYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFA-TLLHQCLSSIKRGSSREIALASHAIGLLALTVGY----------- 112 (320)
Q Consensus 45 l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~-tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~----------- 112 (320)
+.......|..++..|..+....+ +++..... .++..+...++.....=+..|+.++.-++-....
T Consensus 233 ~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 310 (861)
T 2bpt_A 233 TQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS 310 (861)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 444556679989888877766543 33334445 7777777777654433345666666555443210
Q ss_pred ----CCChHHHHHHhHHHHHHHhhcCC------ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcccc
Q 020839 113 ----GENSREILEESVAPISQALKSGF------DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVA 182 (320)
Q Consensus 113 ----~~~~~~i~~~~~~~L~~~i~d~s------~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~ 182 (320)
..-...++..+.|.|...+.+.. +...|..++.+|+.++-..+ ..-+..+|.++...+.+
T Consensus 311 ~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~~l~~~l~~~l~~-------- 380 (861)
T 2bpt_A 311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILEPVLEFVEQNITA-------- 380 (861)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTC--------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHHHHHHHHHHHcCC--------
Confidence 00123456778888888777431 23778888999987665544 23355677777776643
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 183 TRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 183 ~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.++.+.-+|+.+++-+.....+..+. ..+...+|.|...|..++..||.+|..+|+-+.+.
T Consensus 381 --~~~~~r~~a~~~l~~i~~~~~~~~~~-~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 381 --DNWRNREAAVMAFGSIMDGPDKVQRT-YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp --SSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --CChhHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45778889999988887554422332 45667889999999999999999999988877665
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.22 E-value=0.018 Score=48.63 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+...+..+.++....|..++..|...-. ...++.+.+.++...+.-+..|+++++-+ +.
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---- 105 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD---- 105 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----
Confidence 55666777777777788888866554211 12345566667766666667777777654 32
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
....|.|.+.+.|+ ++.+|..++.+|+-+. +.. .+..+...+.. +++.+..+|+.+
T Consensus 106 ----~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~-----~~~----~~~~L~~~l~d----------~~~~vr~~A~~a 161 (201)
T 3ltj_A 106 ----ERAVEPLIKALKDE-DWFVRIAAAFALGEIG-----DER----AVEPLIKALKD----------EDGWVRQSAADA 161 (201)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHT-----CGG----GHHHHHHHTTC----------SSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-----CHH----HHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 13567777777544 6788999999998762 222 23344444422 567888888888
Q ss_pred HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.+-+ .. ..+++.|..+|+.++..||.+|-++|+-+
T Consensus 162 L~~~---------~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 162 LGEI---------GG---ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHH---------CS---HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHh---------Cc---hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7776 11 36789999999999999999999998754
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.17 E-value=0.023 Score=56.03 Aligned_cols=194 Identities=11% Similarity=0.114 Sum_probs=115.0
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhh---HHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQ---HQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVG 111 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~---~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg 111 (320)
..+++++..+.-.-...+..++..++++|+...- ...+. .-++..+.+.++++. +.=+..|+.+++-++. +
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~---~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~--~ 150 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR---AGLIPKFVSFLGKTDCSPIQFESAWALTNIAS--G 150 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH---TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH---CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc--C
Confidence 3678888888777777788999999998865432 22332 456778888887776 4455677777776663 3
Q ss_pred CCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCC
Q 020839 112 YGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRP 185 (320)
Q Consensus 112 ~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~ 185 (320)
..+....+.+ ...|+|.+.+.++ +...+..|+.||+-++.- +++--..+ +..+..++...+.. ..
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~---~~~~r~~i~~~g~i~~Ll~lL~~~~~~-----~~ 221 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGA---GSAFRDLVIKHGAIDPLLALLAVPDLS-----TL 221 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHTTCSSCGG-----GS
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcc---CHHHHHHHHHcCCcHHHHHHHhccchh-----Hh
Confidence 2222333443 3678888877654 456677888999877532 22211122 22344444321100 01
Q ss_pred ChHHHHHHHHHHHHHHhcCCCC-ccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 186 SAPIITAMVSAWSFLLTTMDGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 186 ~~~v~~AAL~aW~lLlT~l~~~-~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
...+... -+|++--...... ...-.....++|.|..+|.+++.+|+..|.-+|+-+-.
T Consensus 222 ~~~~~~~--a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 222 ACGYLRN--LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp CHHHHHH--HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH--HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 1122222 2343322222111 11113456889999999999999999999988876643
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.11 E-value=0.069 Score=51.46 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=115.0
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+...+..+.......|..++..|.++..... ....+. ....+..+.+.++.++.+-+..++.++.-++. +..+.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~~~~~ 177 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQES 177 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--CCHHH
Confidence 34455556666667778888888887765422 111111 13566777888887776666777777776664 32111
Q ss_pred hHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 116 SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 116 ~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~--~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
...+.+ ...|.|.+++.++.....+.+++.+|..++. +......+. ..+..+..++. .+++.+...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~----------~~~~~~~~~ 246 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLT----------DPSQRLVQN 246 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTT----------SSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHh----------CCChHHHHH
Confidence 222222 4678888888887766666666677666553 111111111 11222333332 145677777
Q ss_pred HHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
|+.+++-|....+.... ....+|.|..+|.+++.+||..|..+|+-+
T Consensus 247 a~~~L~~l~~~~~~~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 247 CLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp HHHHHHHHHTTCTTCSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 87777777665444332 247899999999999999999998888766
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.08 E-value=0.062 Score=54.20 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=117.2
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhh--hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTL--QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~--~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
.+...+..+.......|..++..|.++..... ...++ ....+..+.+.++.++.+.+..++.++.-++. +..+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~~~~ 173 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR---LAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQE 173 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHH---HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHH---HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--cCcH
Confidence 44555666666667778888888888776532 11121 14567788888888887777788888877775 2211
Q ss_pred ChHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH--HHHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 115 NSREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER--TMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 115 ~~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~--~m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
....+. ....|.|.+++.+......+..++.+|..+++ +......+.. .+..+..++.. ++..+..
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~----------~~~~~~~ 242 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTD----------PSQRLVQ 242 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTC----------SCHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhc----------CCHHHHH
Confidence 122222 24578888888887666666677777776664 1111111111 12223333321 3566766
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 192 AMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
.|+....-|...-+.... ....+|.|..+|.++|.+||..|..+|+-+.
T Consensus 243 ~a~~~L~nL~~~~~~~~~----~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp HHHHHHHHHGGGCTTCCS----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhh----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 776666666544333322 2478999999999999999999999887664
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.99 E-value=0.027 Score=59.27 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=114.6
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHH
Q 020839 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL 120 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~ 120 (320)
.+..+...+...|+.+...|.++-...-....+.+ .-.+..+++.++.|+..=+..|+.+++=++....+ +.+|
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~--~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p----~~~~ 573 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ--EGGVKALLRMALEGTEKGKRHATQALARIGITINP----EVSF 573 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH----HHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh----hhhh
Confidence 44446666778899999888877533222222221 23455666777788755467888888877765332 2222
Q ss_pred -----HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHhhcCCCCCccccCCCChHHH
Q 020839 121 -----EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPII 190 (320)
Q Consensus 121 -----~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~ 190 (320)
....|+|..++........+..++.||+-++. .+++......+ .|.....+ +++.+.
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~---~~d~~~~~Ii~aG~l~~Lv~LL~s----------~~~~Vq 640 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS---MNESVRQRIIKEQGVSKIEYYLME----------DHLYLT 640 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHHHHHS----------CCTTHH
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHcC----------CCHHHH
Confidence 24789999988744444444455565554443 23322222222 23333332 456788
Q ss_pred HHHHHHHHHHHhcCCCCccchhhH--HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 191 TAMVSAWSFLLTTMDGCSLDSKKW--QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 191 ~AAL~aW~lLlT~l~~~~~~~~~~--~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.+|+.+.+-|.+.-+ ....+. ...+|.|..+|++++.++|.+|+-+||-+-.
T Consensus 641 ~~A~~~L~NLa~~~~---~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 641 RAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHHHHTTSHH---HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChH---HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 999999998877422 212333 2579999999999999999999999999975
No 38
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.98 E-value=0.041 Score=46.82 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=100.6
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+...+..+.+.....|..++..|.+.-. ...+..+.+.++..++.=+..|+.+++-+ +.
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~---- 110 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD---- 110 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----
Confidence 45556667777777778888866554311 22345566667666655566777777654 32
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
....|.|.+.+.| .+..+|..++.+|+-+ + +.+ .+..+...+.. +++.|..+|+.+
T Consensus 111 ----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~---~--~~~----~~~~L~~~l~d----------~~~~vr~~a~~a 166 (211)
T 3ltm_A 111 ----ERAVEPLIKALKD-EDWFVRIAAAFALGEI---G--DER----AVEPLIKALKD----------EDGWVRQSAADA 166 (211)
T ss_dssp ----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHH---C--CGG----GHHHHHHHTTC----------SSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhC-CCHHHHHHHHHHHHHc---C--CHH----HHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 1356777777754 4668888999999876 2 222 23444444422 567888888888
Q ss_pred HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
-+-+- . ..+++.|..+|++++..||.+|-++|.-+..
T Consensus 167 L~~~~---------~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEIG---------G---ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHC---------S---HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHhC---------c---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 77651 1 3678899999999999999999999876533
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.028 Score=58.74 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=109.9
Q ss_pred chhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHH---HHHHHHHHHhHHhhhcCCCCChHHHHH--
Q 020839 48 KRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSR---EIALASHAIGLLALTVGYGENSREILE-- 121 (320)
Q Consensus 48 Krss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~---E~~lA~~~l~Ll~ltlg~~~~~~~i~~-- 121 (320)
-....|+.+...|..+-...- ....+. .--+..++..++.|+.. =+..|+++++=+.++..+ ..+|.
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvq---qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np----~~~f~~~ 541 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQ---QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP----GLIFKKY 541 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHH---TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH----HHHSSSS
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH----HHHcCCC
Confidence 345568888877776642221 122222 23455677777777533 256888888877776542 23331
Q ss_pred ---HhHHHHHHHhhc-CC-C----------h-HHHHHHHHHHHHHHHHcCCCHHHHH-HH------HHHHHHhhcCCCCC
Q 020839 122 ---ESVAPISQALKS-GF-D----------S-SKIASLLECLAVITFVGGNDPEETE-RT------MQIMWQIVHPKLGS 178 (320)
Q Consensus 122 ---~~~~~L~~~i~d-~s-~----------s-~~r~~~i~aLa~~~f~~~~~~~~~~-~~------m~~l~~i~~~~~g~ 178 (320)
...|+|..++.. +. . + ..+..++.||+-++-...++.+++. .. +..+.+...+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---- 617 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---- 617 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC----
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC----
Confidence 577899998883 22 1 1 2266778888777665432223332 22 3334444432
Q ss_pred ccccCCCChHHHHHHHHHHHHHHhcCCC--Cccch---hhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 179 NVVATRPSAPIITAMVSAWSFLLTTMDG--CSLDS---KKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 179 ~~~~~~~~~~v~~AAL~aW~lLlT~l~~--~~~~~---~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
++..|..||+..++-|.+.-.. .++.. .....-++.|+.+++++|.++|.||+-+||.+-
T Consensus 618 ------~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 618 ------ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp ------SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 5678999999999999985432 12221 111124889999999999999999999999984
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.95 E-value=0.015 Score=51.79 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=38.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVI 150 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~ 150 (320)
+.+.+.++.+++.-+..|+++++-+. . ....|.|.+.+.|+ ++..|..++.+|+-+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~----~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG----G--------QDAVRLAIEFCSDK-NYIRRDIGAFILGQI 81 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC----C--------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC----C--------chHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 45666677666667777888777543 1 23567777777764 567888888888754
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.76 E-value=0.21 Score=43.66 Aligned_cols=149 Identities=11% Similarity=0.070 Sum_probs=103.9
Q ss_pred hHHHHHHHhc-cchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALY-EKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~-eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+......+. ++....|..++..|..+.. .+... +......++..++..++-.+..=+..|..++.-++-..+
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~-~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAK-GLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 4444555564 7888889999988776664 33333 355778999999999987665555666666665554433
Q ss_pred hHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG---NDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~---~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
++.+.|.|...+.+. ++..|..++..|+.+.--.+ ........+|..+...+.. ..+.|..+
T Consensus 131 ----~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D----------~~~~VR~~ 195 (242)
T 2qk2_A 131 ----LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE----------PDPTVRDS 195 (242)
T ss_dssp ----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS----------SCHHHHHH
T ss_pred ----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC----------CChHHHHH
Confidence 466778888877764 67889888888887543332 1234455777777777632 66789999
Q ss_pred HHHHHHHHHhcCCC
Q 020839 193 MVSAWSFLLTTMDG 206 (320)
Q Consensus 193 AL~aW~lLlT~l~~ 206 (320)
|..+.+.+...++.
T Consensus 196 A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 196 SAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCH
Confidence 99999999988865
No 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.71 E-value=0.16 Score=52.88 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=113.0
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~-~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+...+..|.......|..++..|.++...... ...+. ....+..+.+.++.++.+-+..|+.++..++. +..+.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~--~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~ 310 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQES 310 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHH
Confidence 344555566666667788888888877665321 11111 13466777788887665556677777776664 22111
Q ss_pred hHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 116 SREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE--RTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 116 ~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~--~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
...+. ....+.|.+++.+++....+..++.+|..++. +......+. ..+..+..++.. .++.++..
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~----------~~~~~~~~ 379 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTD----------PSQRLVQN 379 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTC----------SCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcC----------CchHHHHH
Confidence 12222 23567788888877666666566777776664 221111111 112333333322 34566677
Q ss_pred HHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
|+.+..-|....+..... ...+|.|..+|.+.+..||..|..+|+-|
T Consensus 380 a~~~L~~L~~~~~~~~~~----~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HHHHHHHHHTTCTTCSCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 765555565554443222 47899999999999999999998888766
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.58 E-value=0.02 Score=48.41 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~ 160 (320)
..+.+.++.+++.-+..|+.+++-++..-. +....+.+ ...|.|.+.+.++ ++..|..|+.+|+-++. .+.+.
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~~~~ 88 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGN--EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS---GGNEQ 88 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT---SCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhc---CCcHH
Confidence 345555666666667788888877763221 11223332 4678888888876 56777788888887653 23333
Q ss_pred HHHHH-----HHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHH
Q 020839 161 TERTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRI 234 (320)
Q Consensus 161 ~~~~m-----~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRi 234 (320)
....+ ..+..++.. +++.+...|+.+-+-|...-+.. . ..++ ...+|.|..+|.+++..||.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~-~-~~~~~~~~i~~L~~ll~~~~~~v~~ 156 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSS----------PNEQILQEALWALSNIASGGNEQ-I-QAVIDAGALPALVQLLSSPNEQILQ 156 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTC----------SCHHHHHHHHHHHHHHTTSCHHH-H-HHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcC----------CcHHHHHHHHHHHHHHHcCCHHH-H-HHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 22222 334444422 45677777766666555421111 1 1111 35799999999999999999
Q ss_pred HHHHHHHHHHH
Q 020839 235 AAGEALALILE 245 (320)
Q Consensus 235 AAGEaiALl~E 245 (320)
.|..+|+-+..
T Consensus 157 ~a~~aL~~l~~ 167 (210)
T 4db6_A 157 EALWALSNIAS 167 (210)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999888754
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.41 E-value=0.25 Score=49.43 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHH
Q 020839 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (320)
Q Consensus 81 ~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~ 160 (320)
+..+.+.++..++.-+.+|+++++-+. ..++.+.+.|.+.+.+.| +++.+|..|+.|++-+.-.+.+-..+
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~~~~~ 158 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQMVED 158 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChhhccc
Confidence 455556666555666778877766443 236778888999988875 47788888888888666543322211
Q ss_pred HHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCC---------------------------------
Q 020839 161 TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC--------------------------------- 207 (320)
Q Consensus 161 ~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~--------------------------------- 207 (320)
...++.+...+.. +++.|..+|+.+.+-+...-+..
T Consensus 159 -~~~~~~l~~lL~d----------~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 159 -QGFLDSLRDLIAD----------SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLS 227 (591)
T ss_dssp -HHHHHHHHHTTSC----------SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHhCC----------CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 2345555555532 33444444444443332221110
Q ss_pred ---ccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 208 ---SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 208 ---~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
..........++.+..+|++.+..|+.+|..+|.-+.
T Consensus 228 ~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 228 NYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp TSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 0011223567888999999999999998888876653
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.82 E-value=0.88 Score=45.39 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=113.2
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+......+..+....|..|...+.+++...+ +.+.. ..+++.+...+.-.++.=+.-|+.+++=++-.-+... .
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~ 196 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-L 196 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-S
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-c
Confidence 44456667888888899999988888876432 22221 3567778888864444334455556655553322100 0
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
-.+.....+.|.+.+.+ .++-.++..+.+| ..++..+..+....++.+...+.+ .++.|+-+|+.+
T Consensus 197 ~~l~~~~~~~Ll~~l~~-~~~~~q~~il~~l---~~l~~~~~~~~~~~l~~l~~~l~~----------~~~~V~~ea~~~ 262 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNE-CTEWGQIFILDCL---SNYNPKDDREAQSICERVTPRLSH----------ANSAVVLSAVKV 262 (591)
T ss_dssp CCCHHHHHHHHHHHHHH-CCHHHHHHHHHHH---HTSCCCSHHHHHHHHHHHTTCSCS----------STTHHHHHHHHH
T ss_pred hhccHHHHHHHHHcCCC-CCchHHHHHHHHH---HHhCCCChHHHHHHHHHHHHHHcC----------CChHHHHHHHHH
Confidence 01111222333333333 3444455555544 555666666666666666554432 556899999999
Q ss_pred HHHHHhcCC-CCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 197 WSFLLTTMD-GCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 197 W~lLlT~l~-~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
|.-+...++ ..+..........+.|..+++ +|.+||.+|=++|+.+...
T Consensus 263 i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 888765442 222222334466677777664 8899999999999999876
No 46
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.65 Score=41.36 Aligned_cols=154 Identities=6% Similarity=-0.004 Sum_probs=92.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHhH-HhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC-CCHH--
Q 020839 84 CLSSIKRGSSREIALASHAIGL-LALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGG-NDPE-- 159 (320)
Q Consensus 84 ~~~~ikkg~~~E~~lA~~~l~L-l~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~-~~~~-- 159 (320)
|...+...+-+|+.-|+..+.- ++-....-.....=|.++...|++.+...++..+|..++.||+.++--.+ ....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4445555568888877776666 54221110000111456677888888767777778899999997664433 3333
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHH
Q 020839 160 ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEA 239 (320)
Q Consensus 160 ~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEa 239 (320)
-...++-.+.+.+.. ..+.|..+|-.+---++..+++.... ..++..++.|...|++.+..||.++-..
T Consensus 101 y~~~llp~ll~~l~d----------kk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKE----------KKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHHHHHHHHHGGGC----------CCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 233455555554422 22445444333333333334432211 1145788999999999999999999999
Q ss_pred HHHHHHhcC
Q 020839 240 LALILETGS 248 (320)
Q Consensus 240 iALl~E~~~ 248 (320)
|+-+.+...
T Consensus 170 l~~~~~~~~ 178 (249)
T 2qk1_A 170 FNASMKEEK 178 (249)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcC
Confidence 999988744
No 47
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.26 E-value=0.092 Score=41.63 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
.|.|.+.+.| .++.+|..++.+|+-+. +...+..+++.+. . +++.|..+|+.+.+-+-
T Consensus 44 ~~~L~~~L~d-~~~~vR~~A~~aL~~~~-----~~~a~~~L~~~L~----d----------~~~~VR~~A~~aL~~~~-- 101 (131)
T 1te4_A 44 FEPLLESLSN-EDWRIRGAAAWIIGNFQ-----DERAVEPLIKLLE----D----------DSGFVRSGAARSLEQIG-- 101 (131)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHGGGC-----SHHHHHHHHHHHH----H----------CCTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHc----C----------CCHHHHHHHHHHHHHhC--
Confidence 3778888875 56789999999987642 3333334443332 1 45678788877666542
Q ss_pred CCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 020839 204 MDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (320)
Q Consensus 204 l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiA 241 (320)
. ..++|.|..+|+++|..||.+|.++|+
T Consensus 102 -------~---~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 102 -------G---ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -------S---HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -------c---HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 367899999999999999999998875
No 48
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.15 E-value=1.4 Score=41.56 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=102.5
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHh---hhhHHHhhhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 40 EALDALYEKRGSTREKALSSIIEAFNN---TLQHQFVEKKFATLLHQCLSSIKR-GSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 40 ~~id~l~eKrss~Re~~L~~l~~~l~~---~~~~~~v~~~~~tL~~~~~~~ikk-g~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
..+..|.......|+.+...|.++-.. ......++ .-.+..+.+.+.+ ++..-+..|+.++.-++.... +.
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~---~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--~n 205 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE---VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT--EN 205 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH---TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH--HH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH---CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh--hh
Confidence 334444444445566666555544321 11111111 1234455554433 444444566666665554211 12
Q ss_pred hHHHH--HHhHHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHhhcCCCCCccccCCC
Q 020839 116 SREIL--EESVAPISQALKSGFDS---SKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRP 185 (320)
Q Consensus 116 ~~~i~--~~~~~~L~~~i~d~s~s---~~r~~~i~aLa~~~f~~~~~~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~ 185 (320)
...|. ....|+|.+++..++.. ..+..++.+|.-++.+.+.+.+......+ .+...+.+ +
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~----------~ 275 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS----------H 275 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC----------S
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC----------C
Confidence 33453 46789999999876543 46667888888777543334443433332 23333322 4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 186 SAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 186 ~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
+..+...|+.+-+-|.+. ..+....++ ...+|.|.++|.+.+..+|..|..+|.-|..-
T Consensus 276 ~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp CHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 445655555444444322 111111222 25699999999999999999998888877654
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.09 E-value=0.68 Score=45.38 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=106.0
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHhhh-hHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHH
Q 020839 42 LDALYEKRGSTREKALSSIIEAFNNTL-QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL 120 (320)
Q Consensus 42 id~l~eKrss~Re~~L~~l~~~l~~~~-~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~ 120 (320)
+..+.......+..+...|..+..... ....+. ...++..+...++.++..=+.-|+++++-++- +.......+.
T Consensus 257 ~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~--~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~--~~~~~~~~i~ 332 (529)
T 3tpo_A 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV--KKGVVPQLVKLLGATELPIVTPALRAIGNIVT--GTDEQTQKVI 332 (529)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH--TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH--hccchHHHHHHhcCCChhHHHHHHHHHHHHHc--cchHHHHHHh
Confidence 334555566667777766655443221 111111 12345556666776665556677777776552 3211122222
Q ss_pred -HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 121 -EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 121 -~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
....|+|..++.++ ....|..|+.+|+-++. +..+.....++ .+..++.+ ++..+...|.
T Consensus 333 ~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~---~~~~~~~~v~~~g~i~~Lv~lL~~----------~~~~v~~~A~ 398 (529)
T 3tpo_A 333 DAGALAVFPSLLTNP-KTNIQKEATWTMSNITA---GRQDQIQQVVNHGLVPFLVGVLSK----------ADFKTQKAAA 398 (529)
T ss_dssp HTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT---SCHHHHHHHHHTTHHHHHHHHHHS----------SCHHHHHHHH
T ss_pred hcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc---ccHHHHHHHHhcCcHHHHHHHhcC----------CCHHHHHHHH
Confidence 34678888888754 44566678888876553 33433333332 23333332 4556666665
Q ss_pred HHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 020839 195 SAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~ 247 (320)
.+-+-|.+.-+...+. .++ ...+|.|.++|.+.|..|+..+-++|.-|...+
T Consensus 399 ~aL~nl~~~~~~~~~~-~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIV-YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHSCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHH-HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 5555455443322211 122 257999999999999999999999998887664
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.93 E-value=0.4 Score=48.30 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=88.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
.+..+.+.++..++--+.+|+++++-+. ..++.+.+.|.+.+.+.+ +++.+|.+|+.|++-+.-.. ++
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--------~~~~~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~---p~ 175 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--------SSEMCRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKV---PE 175 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHC---hH
Confidence 4556667777666778899999998875 146788899999999987 45778888888888776653 33
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcC------------
Q 020839 160 ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK------------ 227 (320)
Q Consensus 160 ~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s------------ 227 (320)
.+...++.+...+. ..++.|+.+|+.+.+-+...-+. . ...+...+|.|..+|..
T Consensus 176 ~v~~~~~~l~~lL~----------D~d~~V~~~Al~~L~~i~~~~~~--~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~ 242 (618)
T 1w63_A 176 LMEMFLPATKNLLN----------EKNHGVLHTSVVLLTEMCERSPD--M-LAHFRKLVPQLVRILKNLIMSGYSPEHDV 242 (618)
T ss_dssp GGGGGGGGTTTSTT----------CCCHHHHHHHHHHHHHHCCSHHH--H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCS
T ss_pred HHHHHHHHHHHHhC----------CCCHhHHHHHHHHHHHHHHhChH--H-HHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 22222222222121 26688999998877766533111 1 12344666777766652
Q ss_pred ---CCHHHHHHHHHHHHHH
Q 020839 228 ---DDRSIRIAAGEALALI 243 (320)
Q Consensus 228 ---~d~~VRiAAGEaiALl 243 (320)
.+.-+|+..=+.++.+
T Consensus 243 ~~~~~~~~q~~il~~L~~l 261 (618)
T 1w63_A 243 SGISDPFLQVRILRLLRIL 261 (618)
T ss_dssp SSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHh
Confidence 4677777665655544
No 51
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.93 E-value=1.1 Score=48.01 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=51.8
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccc
Q 020839 131 LKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLD 210 (320)
Q Consensus 131 i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~ 210 (320)
+....++..|..++.++|+ ++.|.++...+..++..+.. ..+..|..+|+-+.|+++..=+
T Consensus 550 L~~~~dp~vRygaa~algl-AyaGTGn~~aIq~LL~~~~~-------------d~~d~VRraAViaLGlI~~g~~----- 610 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIAL-AYAGTGNNSAVKRLLHVAVS-------------DSNDDVRRAAVIALGFVLLRDY----- 610 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHH-HTTTSCCHHHHHHHHHHHHH-------------CSCHHHHHHHHHHHHHHTSSSC-----
T ss_pred HHhCCCHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhcc-------------CCcHHHHHHHHHHHHhhccCCH-----
Confidence 3333455555555555442 33444455545445544432 1345677888888888765421
Q ss_pred hhhHHhhHHHHHhh-hcCCCHHHHHHHHHHHHHHH
Q 020839 211 SKKWQQSISYFSTL-LDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 211 ~~~~~~~l~~l~~l-L~s~d~~VRiAAGEaiALl~ 244 (320)
+.+|++.++ +++.|..||-+|..+++++.
T Consensus 611 -----e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 -----TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp -----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 234566664 34668888888888888874
No 52
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.92 E-value=0.66 Score=48.79 Aligned_cols=195 Identities=10% Similarity=0.004 Sum_probs=121.2
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC-
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE- 114 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~- 114 (320)
-.+..++..+..+....++.++..+..+.......++|.+.-. +.+...++.++..=+.+|+-+++=++...+.+.
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv---~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV---DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH---HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc---HHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc
Confidence 3566777788888888899999999998888777788766432 556666665553323455555555543211000
Q ss_pred ---ChHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHhhcCCCCCccccCCCCh
Q 020839 115 ---NSREILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPEETE---RTMQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 115 ---~~~~i~~~~~~~L~~~i~d~s-~s~~r~~~i~aLa~~~f~~~~~~~~~~---~~m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
-.+.-.+.+.|.|.+.+..+. +...|..|+.+|+-++.-... -+.+. ..+..|..+..+ +++
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v-k~~lv~d~g~Ip~LV~LL~s----------~d~ 435 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC-KEKLIEDKASIHALMDLARG----------GNQ 435 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH-HHHHHHCHHHHHHHHHHHHT----------TCG
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH-HHHHHHccchHHHHHHHhCC----------CCh
Confidence 011124567788888888763 667788888998877653211 11111 123334444433 345
Q ss_pred HHHHHHHHHHHHHHhcCCCCc---------------c------c-hhhHH---------hhHHHHHhhhcCCCHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTMDGCS---------------L------D-SKKWQ---------QSISYFSTLLDKDDRSIRIAA 236 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~---------------~------~-~~~~~---------~~l~~l~~lL~s~d~~VRiAA 236 (320)
.+...|+..-+=|.+.-+..+ + . .+..+ .++|.|+.+|.+++.+||-.|
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~A 515 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELI 515 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 677777777777776332110 0 0 01111 579999999999999999999
Q ss_pred HHHHHHHH
Q 020839 237 GEALALIL 244 (320)
Q Consensus 237 GEaiALl~ 244 (320)
..+|.-|-
T Consensus 516 a~aL~NLA 523 (810)
T 3now_A 516 ARVLNAVC 523 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988773
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.68 E-value=0.32 Score=47.68 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=103.3
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhh-HHHhhhhHHHHHHHHHHhhcCCCHHH-----HHHHHHHHhHHhhhcCC
Q 020839 39 DEALDALYEKRGSTREKALSSIIEAFNNTLQ-HQFVEKKFATLLHQCLSSIKRGSSRE-----IALASHAIGLLALTVGY 112 (320)
Q Consensus 39 ~~~id~l~eKrss~Re~~L~~l~~~l~~~~~-~~~v~~~~~tL~~~~~~~ikkg~~~E-----~~lA~~~l~Ll~ltlg~ 112 (320)
...+..|.......|+.++..|.++...... .+.+.+ .-.+..+...++...... ...++.++.-++..-.+
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~--~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 223 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK--HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc
Confidence 3344455566666677777777766543221 111211 223445555565543221 22344444444432222
Q ss_pred CCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHhhcCCCCCccccCCCCh
Q 020839 113 GENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERT-----MQIMWQIVHPKLGSNVVATRPSA 187 (320)
Q Consensus 113 ~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~-----m~~l~~i~~~~~g~~~~~~~~~~ 187 (320)
.. .-.....+.|.|.+++.+. +...+..++.||+-++ ....+..... +..+..++. .+++
T Consensus 224 ~~-~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~---~~~~~~~~~i~~~g~i~~Lv~lL~----------~~~~ 288 (510)
T 3ul1_B 224 AP-PLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLT---DGPNERIEMVVKKGVVPQLVKLLG----------ATEL 288 (510)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHT---SSCHHHHHHHHTTTCHHHHHHHHT----------CSCH
T ss_pred hh-HHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHh---hchhhhHHHHHhcccchhhhhhhc----------CCCh
Confidence 21 2334567889999988754 4456667777776543 3333222221 122333332 2567
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 188 PIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 188 ~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.+...|+.+.+-+.+.-+.... .++ ...+|.|..+|.+.+.+||..|.-+|+=|
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~--~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl 343 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQ--KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 343 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHH--HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhcCCHHHHH--HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888999988888765332211 111 25789999999999999999999888766
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.65 E-value=0.89 Score=45.78 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=70.6
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+......+..++...|..|...+.+++...+ +.+. .+++.+...+...++.=+..|+.++.-++-. ..+.
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~---~~~~ 213 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER---SPDM 213 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS---HHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh---ChHH
Confidence 34455556677777778888888888776543 2222 3444455555543433344555555544321 1011
Q ss_pred HHHHHHhHHHHHHHhhc--------------CCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 020839 117 REILEESVAPISQALKS--------------GFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHP 174 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d--------------~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~ 174 (320)
...|..+.|.|.+++.+ ..++-.+...+.+|+. ++..+++.....++++..++.+
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~---l~~~~~~~~~~~~~~L~~l~~~ 282 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI---LGRNDDDSSEAMNDILAQVATN 282 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH---HTTTCHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHhc
Confidence 24677777777766654 2345555556666554 4455666555666777776643
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.65 E-value=1.4 Score=44.12 Aligned_cols=188 Identities=8% Similarity=0.038 Sum_probs=108.3
Q ss_pred hHHHHHHHhccc-hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALYEK-RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eK-rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+...+..|... ....|..+...|..+....-....+.+ ...+..+.+.++.+.+.=+..|+.++.-++..-.. .
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~--~ 132 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--A 132 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT--H
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch--h
Confidence 345555556543 456677887777643222111111111 24677788888877765567888888877765432 2
Q ss_pred hHHHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCChHH
Q 020839 116 SREIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPI 189 (320)
Q Consensus 116 ~~~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~~v 189 (320)
...+. ....|.|.+.+.++ +...+..++.+|..+++ .+.+.... .+..|..++.. .....+
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~---~~~~~~~~i~~~g~v~~Lv~lL~~---------~~~~~~ 199 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRT---------YTYEKL 199 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHTT---------CCCHHH
T ss_pred HHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh---cCcHHHHHHHHcCChHHHHHHHHc---------CChHHH
Confidence 33343 46789999999876 34566667777776665 12222111 23344455533 123344
Q ss_pred HHHHHHHHHHHHhcCCCCccchhhHH-hhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 190 ITAMVSAWSFLLTTMDGCSLDSKKWQ-QSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 190 ~~AAL~aW~lLlT~l~~~~~~~~~~~-~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
.-+|+.+-..|.. .+. ....+++ ..+|.|..+|.+.+..+|..|..+|.-+.
T Consensus 200 ~~~a~~~L~nLs~-~~~--~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 200 LWTTSRVLKVLSV-CSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHHHHTT-CTT--HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhc-Ccc--cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4455544333332 222 1112222 46899999999999999999888877664
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.51 E-value=1.8 Score=44.75 Aligned_cols=177 Identities=8% Similarity=0.001 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHH-HHhHHHH
Q 020839 49 RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREIL-EESVAPI 127 (320)
Q Consensus 49 rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~-~~~~~~L 127 (320)
....|..+...|.++....-....+. ....+..+.+.++.+++.=+..|+.++.-++..-.. ....+. ....|.|
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~--~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIF--KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHH
Confidence 44567777777776322211111111 135677888888887765567888888887765442 123332 3678899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHh
Q 020839 128 SQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLT 202 (320)
Q Consensus 128 ~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT 202 (320)
.+++.++ +...+..++.+|..+++- +.+.... .+..+..++.. + ....+..+|+.+-..|..
T Consensus 282 v~lL~~~-~~~v~~~a~~aL~~La~~---~~e~~~~i~~~~~i~~Lv~lL~~--~-------~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 282 VALLNKT-NVKFLAITTDCLQILAYG---NQESKLIILASGGPQALVNIMRT--Y-------TYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHGGGCC-CHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHHTT--C-------CCHHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHhcC---ChHHHHHHHHcCCHHHHHHHHhc--C-------CHHHHHHHHHHHHHHhhc
Confidence 9998873 445666777888866642 1211111 12223333432 1 223343333333333332
Q ss_pred cCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 203 TMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 203 ~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.+.. ...++ ...+|.|..+|.+.+..++..|..+|+-+..
T Consensus 349 -~~~~--~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 349 -CSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp -STTH--HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHT
T ss_pred -ChHH--HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 2221 11222 2568999999999999999988777776643
No 57
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.46 E-value=1.8 Score=40.67 Aligned_cols=154 Identities=13% Similarity=0.101 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC-hHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN-SREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~-~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~ 157 (320)
.+..+.+.++.++++=+..|+.++.-++.. ..++ ...|.+ ...|+|.+++....+...+..++.+|.-++..+...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhcc--CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 477788888877755556677766666542 1111 233332 467888887765555555556777776665432111
Q ss_pred HHHHH---HHHHHHHHhhcCCCCCccccCCCChHHHHH---HHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCH
Q 020839 158 PEETE---RTMQIMWQIVHPKLGSNVVATRPSAPIITA---MVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDR 230 (320)
Q Consensus 158 ~~~~~---~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A---AL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~ 230 (320)
-..+. -.+..|..++...+ . .....+... +|..-+..++.-+... ..+. ...+|.|+.+|.+.+.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~-~-----~~~~~v~~~A~~aL~nLs~~~a~~~~~~--~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRS-Q-----TNTLAIIESGGGILRNVSSLIATNEDHR--QILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCC-S-----SSCCHHHHHHHHHHHHHHHHHTTCHHHH--HHHHTTTHHHHHHHHTTCSCH
T ss_pred hHHHHHhcCcHHHHHHHhccCC-C-----cccHHHHHHHHHHHHHHHhhccCCHHHH--HHHHHcCCHHHHHHHHcCCCh
Confidence 11121 23444555554311 0 011123333 3333222222222211 1122 2469999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020839 231 SIRIAAGEALALI 243 (320)
Q Consensus 231 ~VRiAAGEaiALl 243 (320)
.||..|.-+|.-+
T Consensus 278 ~v~~~A~~aL~nL 290 (354)
T 3nmw_A 278 TIVSNACGTLWNL 290 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777765
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.25 E-value=3.1 Score=40.57 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=89.6
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHhHHhhhcCCCCChHHHH--HHhHHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHc
Q 020839 81 LHQCLSSIKR-GSSREIALASHAIGLLALTVGYGENSREIL--EESVAPISQALKSGFDS---SKIASLLECLAVITFVG 154 (320)
Q Consensus 81 ~~~~~~~ikk-g~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~--~~~~~~L~~~i~d~s~s---~~r~~~i~aLa~~~f~~ 154 (320)
+..+.+.+.+ ++..-+..|++++.-++.... +....|. ....|+|.+++..++.. ..+..++.+|.-++.+.
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~--~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCT--ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 4455555443 444445667777766665222 1234443 45789999999876554 46677888888777653
Q ss_pred CCCHHHHHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCC
Q 020839 155 GNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKD 228 (320)
Q Consensus 155 ~~~~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~ 228 (320)
+.+++....+.+ .+...+.+ ++..+...|+.+-+-|.+. ..+....++ ...+|.|.++|.+.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~----------~~~~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKS----------HSLTIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSC----------SCHHHHHHHHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcC----------CChHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhCC
Confidence 334444444333 23333322 4445666665554444432 111111222 25799999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 020839 229 DRSIRIAAGEALALILE 245 (320)
Q Consensus 229 d~~VRiAAGEaiALl~E 245 (320)
+..+|..|..+|.=|..
T Consensus 434 ~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999888877754
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.12 E-value=4.1 Score=38.76 Aligned_cols=186 Identities=8% Similarity=0.015 Sum_probs=101.8
Q ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChH
Q 020839 39 DEALDALYEK-RGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSR 117 (320)
Q Consensus 39 ~~~id~l~eK-rss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~ 117 (320)
...+..+... ....|..+...|.++....-....+. ....+..+.+.++.+.+.=+..|+.++.-++..-+. ...
T Consensus 62 ~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 137 (529)
T 1jdh_A 62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF--KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKM 137 (529)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHH
Confidence 3334444332 34457777766665332211111111 124667788888877755567888888887766442 133
Q ss_pred HHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 118 EIL-EESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 118 ~i~-~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
.+. ....|.|.+.+.++ +...+..++.+|+.+++ .+.+.... .+..+..++.. .+...+..
T Consensus 138 ~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~---~~~~~~~~i~~~~~i~~L~~ll~~---------~~~~~~~~ 204 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRT---------YTYEKLLW 204 (529)
T ss_dssp HHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHHHHH---------CCCHHHHH
T ss_pred HHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHHHHHHh---------CChHHHHH
Confidence 332 46789999998874 45666677777776654 22221111 12233333432 12334444
Q ss_pred HHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 192 AMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
++...-.-|. ..+. ....++ ...+|.|..+|.+.+..+|..|..+|.-+-
T Consensus 205 ~a~~~L~~l~-~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 205 TTSRVLKVLS-VCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHHT-TSTT--HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCcc--cHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 4444322222 2222 111222 267999999999999999998877776553
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.09 E-value=3.3 Score=40.40 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=84.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC-ChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE-NSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~-~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
-.+..+.+-++.++++=+..|+.++.-++. +.++ .-..|.+ ...|+|.+++....+...+..++.+|.-++..+..
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~--~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSW--RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 346777888887775445666666666653 2111 1233433 46788888776655666666777777766654321
Q ss_pred CHHHHH---HHHHHHHHhhcCCCCCccccCCCChHHHHH---HHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCC
Q 020839 157 DPEETE---RTMQIMWQIVHPKLGSNVVATRPSAPIITA---MVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDD 229 (320)
Q Consensus 157 ~~~~~~---~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A---AL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d 229 (320)
.-..+. -.+..|..++.... . .....+... +|..-+..++.-+.. ...+. ...+|.|+.+|.+.+
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~-~-----~~~~~v~~~A~~aL~nLs~~~a~~~~~--~~~i~~~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRS-Q-----TNTLAIIESGGGILRNVSSLIATNEDH--RQILRENNCLQTLLQHLKSHS 392 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCC-S-----SSTTHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHSSCSC
T ss_pred HHHHHHHhcCcHHHHHHHhcCCC-C-----cchHHHHHHHHHHHHHHHhcccCCHHH--HHHHHHcccHHHHHHHHcCCC
Confidence 111221 13444555554311 0 011123332 333222222222221 11222 257999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 020839 230 RSIRIAAGEALALI 243 (320)
Q Consensus 230 ~~VRiAAGEaiALl 243 (320)
..||..|.-+|+-+
T Consensus 393 ~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 393 LTIVSNACGTLWNL 406 (458)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999888888766
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.36 E-value=0.92 Score=41.65 Aligned_cols=133 Identities=10% Similarity=0.076 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHH-HhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHH
Q 020839 94 REIALASHAIGLLALTVGYGENSREILE-ESVAPISQ-ALKSGFDSSKIASLLECLAVITFVGGNDPEETER-----TMQ 166 (320)
Q Consensus 94 ~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~-~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~-----~m~ 166 (320)
+++..|+..+.-++-..+ .+..+.+ ...|+|.. .+.. +++..|..|+.+||.++- +++.-... .+.
T Consensus 55 e~k~~Al~~L~~lv~~~d---na~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~ 127 (296)
T 1xqr_A 55 QEREGALELLADLCENMD---NAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHTSHH---HHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhChh---hHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHH
Confidence 455667766666654433 2344433 34577777 7654 567888899999997653 23322222 334
Q ss_pred HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 167 IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 167 ~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
.|..++.+ .+++.+...|+.+-+-+...-++. ...+. ...+|.|..+|.++|..||..|.-+|+-+.
T Consensus 128 ~Ll~LL~~---------~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 128 KLLRLLDR---------DACDTVRVKALFAISCLVREQEAG--LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHHHHHH---------CSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcc---------CCCHHHHHHHHHHHHHHHcCCcHH--HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45565543 135677777776666655432221 11222 267999999999999999999988887664
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.62 E-value=6.7 Score=42.06 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=101.5
Q ss_pred HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 020839 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAV 149 (320)
Q Consensus 70 ~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~ 149 (320)
++.+..+..+++..+..++---+++=...|.+++.-+|-.++..+ .+-+.|.|...+.+++. ...|++.|+.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-----~~~~~~~~~~~~~~p~~---~~~~~~~l~~ 237 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIADPTE---VPETVHLLGA 237 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-----TGGGHHHHHHHHHCTTH---HHHHHHHHTT
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-----hhhhHHHHHHHhcChhh---hHHHHHHhhc
Confidence 345556778888989988876665445677788888888888642 34577888888888733 5679999999
Q ss_pred HHHHcCCCHHHHHHHHHH-HHHhhcCCCCCccccCCCChHHH-HHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcC
Q 020839 150 ITFVGGNDPEETERTMQI-MWQIVHPKLGSNVVATRPSAPII-TAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK 227 (320)
Q Consensus 150 ~~f~~~~~~~~~~~~m~~-l~~i~~~~~g~~~~~~~~~~~v~-~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s 227 (320)
+||+..-+.- +..+|-= |..-+. . .+.++- -+|+ -..=+--++++......++-..+|.+...-+.
T Consensus 238 ~tfv~~v~~~-~l~~~~p~l~r~l~--~--------~~~~~~r~~~~-~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 238 TTFVAEVTPA-TLSIMVPLLSRGLN--E--------RETGIKRKSAV-IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp CCCCSCCCHH-HHHHHHHHHHHHHT--S--------SSHHHHHHHHH-HHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT
T ss_pred CeeEeeecch-hHHHHHHHHHhhhc--c--------CcchhheeeEE-EEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc
Confidence 9999876543 4445542 222221 1 111111 1110 11122234444333334555666776666664
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCC
Q 020839 228 -DDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 228 -~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.|+++|--|..+++.+...+-.
T Consensus 306 ~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHhhcc
Confidence 5999999999999999887553
No 63
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.89 E-value=3.1 Score=44.50 Aligned_cols=133 Identities=13% Similarity=0.083 Sum_probs=64.9
Q ss_pred HHHHHHhhcCC-C--HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCC-------ChHHHHHHHHHHHHH
Q 020839 81 LHQCLSSIKRG-S--SREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGF-------DSSKIASLLECLAVI 150 (320)
Q Consensus 81 ~~~~~~~ikkg-~--~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s-------~s~~r~~~i~aLa~~ 150 (320)
+..+.+.+.++ + +.-+.-|+-++|++. .|.+ .++++.+.++ +.+.+ .+..|..|+.+||++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~--ag~~---~~~~~lL~~~----L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIY--AGFG---RDTTDYLKNI----IVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHT--TTTT---HHHHHHHHHH----HHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhc--CCCc---HHHHHHHHHH----HcCccccccccccHHHHHHHHHHHHHH
Confidence 34444555532 2 222345555666654 4433 2455544444 44333 246787888888884
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCH
Q 020839 151 TFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDR 230 (320)
Q Consensus 151 ~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~ 230 (320)
|+|..+++-+..+ ..++.. +++.+...|--+-|++ .+... +.+.++..+..+. +..+-
T Consensus 465 -~~GS~~eev~e~L----~~~L~d----------d~~~~~~~AalALGli--~vGTg--n~~ai~~LL~~~~---e~~~e 522 (963)
T 4ady_A 465 -AMGSANIEVYEAL----KEVLYN----------DSATSGEAAALGMGLC--MLGTG--KPEAIHDMFTYSQ---ETQHG 522 (963)
T ss_dssp -STTCCCHHHHHHH----HHHHHT----------CCHHHHHHHHHHHHHH--HTTCC--CHHHHHHHHHHHH---HCSCH
T ss_pred -hcCCCCHHHHHHH----HHHHhc----------CCHHHHHHHHHHHhhh--hcccC--CHHHHHHHHHHHh---ccCcH
Confidence 4466655433333 333332 2222222333333333 23222 2233333333333 34466
Q ss_pred HHHHHHHHHHHHHH
Q 020839 231 SIRIAAGEALALIL 244 (320)
Q Consensus 231 ~VRiAAGEaiALl~ 244 (320)
.||-+|+.+||+++
T Consensus 523 ~vrR~aalgLGll~ 536 (963)
T 4ady_A 523 NITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh
Confidence 78888888888874
No 64
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=88.92 E-value=12 Score=33.08 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCC
Q 020839 81 LHQCLSSIKRGSS--REIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGND 157 (320)
Q Consensus 81 ~~~~~~~ikkg~~--~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~ 157 (320)
+..+.+.++.+++ .-+..|+..+..++..-. +....|.+ ...|+|.+.+..+ +...+..++.+|..+++- +
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~--~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~---~ 83 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKS--EARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFE---D 83 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc--HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC---C
Confidence 3456677887775 455677777777775433 22344543 3679999999764 456677888888887762 3
Q ss_pred HHHHHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHH-HHHHHHHhcCCCCccchhhHHhhHHHHHhhhc-----
Q 020839 158 PEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMV-SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD----- 226 (320)
Q Consensus 158 ~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL-~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~----- 226 (320)
.+....+.+ .|-.++.+ .++..+.-.|. --|.| +..+.. ...+.+..+|.|+.+|-
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~---------~~~~~~~e~a~~aL~nL--S~~~~~--k~~i~~~~i~~Lv~ll~~p~sG 150 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQ---------TRDLETKKQITGLLWNL--SSNDKL--KNLMITEALLTLTENIIIPFSG 150 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH---------CCCHHHHHHHHHHHHHH--HTSGGG--HHHHHHHHHHHHCCCCCHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHcc---------CCCHHHHHHHHHHHHHH--HcChhh--HHHHHhccHHHHHHHHhccccC
Confidence 333333333 23344432 12333433332 33444 233332 23566788999998773
Q ss_pred -----------CCCHHHHHHHHHHHHHH
Q 020839 227 -----------KDDRSIRIAAGEALALI 243 (320)
Q Consensus 227 -----------s~d~~VRiAAGEaiALl 243 (320)
+.+.+|+..|.-+|.-+
T Consensus 151 ~~~~~~~~~~~~~~~~v~~na~~~L~nL 178 (233)
T 3tt9_A 151 WPEGDYPKANGLLDFDIFYNVTGCLRNM 178 (233)
T ss_dssp CCGGGCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHHH
Confidence 24779999998887765
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.50 E-value=5.3 Score=41.73 Aligned_cols=160 Identities=8% Similarity=-0.008 Sum_probs=97.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHc--
Q 020839 80 LLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDS--SKIASLLECLAVITFVG-- 154 (320)
Q Consensus 80 L~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s--~~r~~~i~aLa~~~f~~-- 154 (320)
.+..+...++.+++.=+..|++++.-++..-. ....+.+ ...|+|.+++..++.. ..|..|+.||+=++...
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~---~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKN---FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG---GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 45556666777776666788888877775422 2334444 4668888888877543 36788999998776432
Q ss_pred -----CCCHHHHHHHHHHHHHhhcCCCCCc---cccCCCChHH-HHHHHHHHHHHHhcCCC--CccchhhHH--hhHHHH
Q 020839 155 -----GNDPEETERTMQIMWQIVHPKLGSN---VVATRPSAPI-ITAMVSAWSFLLTTMDG--CSLDSKKWQ--QSISYF 221 (320)
Q Consensus 155 -----~~~~~~~~~~m~~l~~i~~~~~g~~---~~~~~~~~~v-~~AAL~aW~lLlT~l~~--~~~~~~~~~--~~l~~l 221 (320)
+... ......|..++.+..+.. .-....-+.+ ..-|+.|-+=|++.-++ .++...++. .++|.|
T Consensus 535 ~~~f~~~~~---~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 535 GLIFKKYSA---LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp HHHSSSSCS---TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHcCCCcc---ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 2111 123344445444201100 0000012223 56788888888876422 122234554 489999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHH
Q 020839 222 STLLDKDDRSIRIAAGEALALILE 245 (320)
Q Consensus 222 ~~lL~s~d~~VRiAAGEaiALl~E 245 (320)
.++|.+++..||.||-|+|+-+..
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999975
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.33 E-value=21 Score=35.82 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=80.6
Q ss_pred CCHHHHHH-HHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 020839 91 GSSREIAL-ASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMW 169 (320)
Q Consensus 91 g~~~E~~l-A~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~ 169 (320)
.++.++.- -.+++.+. .+|.+ .. ..++...+.+.++.-..+|. --|++..+. ..+++.+.-..+.+.
T Consensus 50 ~~~~~k~~~l~Kli~l~--~~G~d--~s----~~~~~vvkl~~s~~~~~Krl---~YL~l~~~~-~~~~e~~~L~iN~l~ 117 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFIF--LLGHD--ID----FGHMEAVNLLSSNRYTEKQI---GYLFISVLV-NSNSELIRLINNAIK 117 (621)
T ss_dssp CCHHHHHHHHHHHHHHH--HHSCC--CC----SCHHHHHHGGGCSCHHHHHH---HHHHHHHSC-CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HcCCC--Cc----hhHHHHHHHhcCCCHHHHHH---HHHHHHHHc-cCCcHHHHHHHHHHH
Confidence 35666643 44465553 46743 21 24445555665554456662 223333333 344554444444343
Q ss_pred HhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhh--cCCCHHHHHHHHHHHHHHHHhc
Q 020839 170 QIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL--DKDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 170 ~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL--~s~d~~VRiAAGEaiALl~E~~ 247 (320)
.=+. .+++-+.+.||.+-+-+-+ .++++..+|.+..+| .+.++-||.+|.-++.=+|...
T Consensus 118 kDl~----------~~n~~ir~lALr~L~~i~~--------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 118 NDLA----------SRNPTFMGLALHCIANVGS--------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHH----------SCCHHHHHHHHHHHHHHCC--------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HhcC----------CCCHHHHHHHHHHhhccCC--------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3221 2678899999999988743 356678889999999 8889999999999999999974
Q ss_pred C
Q 020839 248 S 248 (320)
Q Consensus 248 ~ 248 (320)
.
T Consensus 180 p 180 (621)
T 2vgl_A 180 P 180 (621)
T ss_dssp G
T ss_pred h
Confidence 4
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=87.81 E-value=3.8 Score=39.33 Aligned_cols=149 Identities=18% Similarity=0.187 Sum_probs=85.0
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCCChHH----HH--HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 020839 81 LHQCLSSIKRGS-SREIALASHAIGLLALTVGYGENSRE----IL--EESVAPISQALKSGFDSSKIASLLECLAVITFV 153 (320)
Q Consensus 81 ~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~~~~~----i~--~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~ 153 (320)
+..+...++.++ +.-+.-|+.++. -++.|.+..+.. +. ....|+|.+++.++. ...+..++.+|+-++.
T Consensus 285 l~~L~~lL~~~~~~~~~e~a~~aL~--nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls~- 360 (457)
T 1xm9_A 285 IRTYLNLMGKSKKDATLEACAGALQ--NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRSGASLLSNMSR- 360 (457)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHH--HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH--HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHHHHHHHHHHhc-
Confidence 444555555544 322333444444 444554332222 33 357799999998875 4555577788887764
Q ss_pred cCCCHHHHHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH--HhhHHHHHhhhc
Q 020839 154 GGNDPEETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW--QQSISYFSTLLD 226 (320)
Q Consensus 154 ~~~~~~~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~--~~~l~~l~~lL~ 226 (320)
+. .....+. -|-.++.. +... ...+..++.+++.+.+-+++.-+.. ...+ ...+|+|..++.
T Consensus 361 ---~~-~~~~~i~~~~i~~Lv~lL~~--~~~~--~~~~~~v~~~~l~~l~ni~~~~~~~---~~~i~~~g~l~~L~~L~~ 429 (457)
T 1xm9_A 361 ---HP-LLHRVMGNQVFPEVTRLLTS--HTGN--TSNSEDILSSACYTVRNLMASQPQL---AKQYFSSSMLNNIINLCR 429 (457)
T ss_dssp ---SG-GGHHHHHHHTHHHHHHTTTS--CCSC--STTHHHHHHHHHHHHHHHHTTCTHH---HHHHCCHHHHHHHHHHHH
T ss_pred ---CH-HHHHHHHHhhhHHHHHhccC--CCCC--CCCcHHHHHHHHHHHHHHHhcCHHH---HHHHHHcCCHHHHHHHHc
Confidence 11 2222222 23333322 1110 0134568888888888777653321 1111 267999999999
Q ss_pred CC-CHHHHHHHHHHHHHHH
Q 020839 227 KD-DRSIRIAAGEALALIL 244 (320)
Q Consensus 227 s~-d~~VRiAAGEaiALl~ 244 (320)
+. +..++..|...|.-+|
T Consensus 430 ~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 430 SSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp CTTCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 99 9999999998876544
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.64 E-value=12 Score=39.60 Aligned_cols=134 Identities=8% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHcCCCHH---H-HHHHHHHHHHhhc
Q 020839 99 ASHAIGLLALTVGYGENSREILEESVAPISQALKSG-FDSSKIASLLECLAVITFVGGNDPE---E-TERTMQIMWQIVH 173 (320)
Q Consensus 99 A~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~-s~s~~r~~~i~aLa~~~f~~~~~~~---~-~~~~m~~l~~i~~ 173 (320)
+..++-.++ .++ ...+..-+.+.|.+.+..+ .+-..|-+++.|+|.++ ++.... . ...++.++..+..
T Consensus 433 ~~~~L~~l~-~~~----~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia--~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 433 EREVLVYLT-HLN----VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHH-HHC----HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-ccC----HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHHHHHHh
Confidence 344555554 444 3567777778888777643 33467788888888443 332222 2 3345555554332
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHHHHhcCCCC-ccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 174 PKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 174 ~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~-~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
.+.| +++..++.+. -.| ++...+.+ .-..+.+...++.|.+.|.+++..||.+|+-++.-+.+..+
T Consensus 506 ~~~~------~~~~~~v~~~-~~~--~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 506 KKRG------KDNKAVVASD-IMY--VVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp SSCS------HHHHHHHHHH-HHH--HHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhcc------ccchHHHHHH-HHH--HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2111 0222333321 233 22222221 01235678889999999998899999999999998887533
No 69
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=87.64 E-value=8.3 Score=38.84 Aligned_cols=145 Identities=9% Similarity=0.130 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHH
Q 020839 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPE 159 (320)
Q Consensus 81 ~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~ 159 (320)
+..+.+.++.+.+.-+..|+.++..+|..-. +.-..|.+ ...|+|.+++..+ +...+..++.||..+++.. +.+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~--~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~--~~~ 124 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRND--KVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGR--DQD 124 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSS--CHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh--HHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccC--CHH
Confidence 3456667777776666778777777765322 22333443 3668999998764 4566677888887776531 233
Q ss_pred HHHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHH-HHHHHHHhcCCCCccchhhHHhhHHHHHhhh--------
Q 020839 160 ETERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMV-SAWSFLLTTMDGCSLDSKKWQQSISYFSTLL-------- 225 (320)
Q Consensus 160 ~~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL-~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL-------- 225 (320)
....+.+ .|..++.+ ..+..+...|. --|.| +..+ .....++...+|.|+.+|
T Consensus 125 nk~~I~~~GaIp~LV~LL~s---------~~~~~~~e~aa~aL~nL--S~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRK---------ARDMDLTEVITGTLWNL--SSHD--SIKMEIVDHALHALTDEVIIPHSGWE 191 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---------CCSHHHHHHHHHHHHHH--TTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHHHcC---------CCCHHHHHHHHHHHHHH--hCCc--hhhHHHHhccHHHHHHHHhccccccc
Confidence 3333322 23444433 12233322222 22333 2222 222345677899999887
Q ss_pred ----------cCCCHHHHHHHHHHHHHH
Q 020839 226 ----------DKDDRSIRIAAGEALALI 243 (320)
Q Consensus 226 ----------~s~d~~VRiAAGEaiALl 243 (320)
+++|.+|+..|..+|.-|
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NL 219 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNV 219 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHH
Confidence 234678888777666544
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.08 E-value=32 Score=35.99 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=84.2
Q ss_pred HHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhc-----CCChHHHHHHHHHHHHHHHHc--CC-CHH------HHH
Q 020839 97 ALASHAIGLLALTVGYGENSREILEESVAPISQALKS-----GFDSSKIASLLECLAVITFVG--GN-DPE------ETE 162 (320)
Q Consensus 97 ~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d-----~s~s~~r~~~i~aLa~~~f~~--~~-~~~------~~~ 162 (320)
..|..++..++-..| +.+...+.+++.+.+.. ..+-..|-+|+.++|.++--+ +. ... ++.
T Consensus 379 ~aa~~~L~~l~~~~~-----~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 379 RACTDFLKELKEKNE-----VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp HHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred HHHHHHHHHHHHHcc-----hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 356667777776655 46677777777777662 223367778999999886332 11 111 232
Q ss_pred HH-HHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 020839 163 RT-MQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (320)
Q Consensus 163 ~~-m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiA 241 (320)
.. .+.+...+...+ +..+.|..+|+..-+=..+.+ ..+.+...+|.+...|.+++.-||.+|+-+|.
T Consensus 454 ~~l~~~v~p~l~~~~-------~~~p~vr~~a~~~lg~~~~~~-----~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~ 521 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNN-------IPHIILRVDAIKYIYTFRNQL-----TKAQLIELMPILATFLQTDEYVVYTYAAITIE 521 (960)
T ss_dssp HHHHHHTHHHHHCSS-------CSCHHHHHHHHHHHHHTGGGS-----CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhcCCC-------CCCceehHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 22 122222222201 136788888886665555544 23567788999999999889999999999999
Q ss_pred HHHHh
Q 020839 242 LILET 246 (320)
Q Consensus 242 Ll~E~ 246 (320)
-+.|.
T Consensus 522 ~~~~~ 526 (960)
T 1wa5_C 522 KILTI 526 (960)
T ss_dssp HHTTC
T ss_pred HHHhc
Confidence 88775
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=86.76 E-value=15 Score=38.61 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=88.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhh---------hhHHHhhhhHHHHHHHHHHhhcCCC---HH--HHHHHHHHH
Q 020839 38 LDEALDALYEKRGSTREKALSSIIEAFNNT---------LQHQFVEKKFATLLHQCLSSIKRGS---SR--EIALASHAI 103 (320)
Q Consensus 38 l~~~id~l~eKrss~Re~~L~~l~~~l~~~---------~~~~~v~~~~~tL~~~~~~~ikkg~---~~--E~~lA~~~l 103 (320)
+...+..+.....-.|..|-..|...+... .....+......|+..+.+.+.++. .+ |...+..++
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al 577 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHH
Confidence 344445555554456888887777665531 1234455677889998888888752 12 445667777
Q ss_pred hHHhhhcCCCC--ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHH----HHHHHHHHhhcCCCC
Q 020839 104 GLLALTVGYGE--NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETE----RTMQIMWQIVHPKLG 177 (320)
Q Consensus 104 ~Ll~ltlg~~~--~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~----~~m~~l~~i~~~~~g 177 (320)
+-++-..+..- -...+...+...+.++++++++...+..++.|++.+.... +++... .+|..+..++.. ++
T Consensus 578 ~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~--~~~~~~~~~~~~~p~~~~iL~~-~~ 654 (960)
T 1wa5_C 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSE-DI 654 (960)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHHh-hh
Confidence 77666665321 1233444444444444455666677777888888777763 233233 444555555544 22
Q ss_pred CccccCCCChHHHHHHHHHHHHHHhcC
Q 020839 178 SNVVATRPSAPIITAMVSAWSFLLTTM 204 (320)
Q Consensus 178 ~~~~~~~~~~~v~~AAL~aW~lLlT~l 204 (320)
..+.-.+++.|+.++...
T Consensus 655 ---------~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 655 ---------QEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp ---------TTTHHHHHHHHHHHHHHC
T ss_pred ---------HhhHHHHHHHHHHHHHhc
Confidence 234444666666665443
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.46 E-value=16 Score=38.07 Aligned_cols=145 Identities=18% Similarity=0.227 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh----cCC-ChHHHHHHHH
Q 020839 73 VEKKFATLLHQCLSSIKRGS--SREIALASHAIGLLALTVGYGENSREILEESVAPISQALK----SGF-DSSKIASLLE 145 (320)
Q Consensus 73 v~~~~~tL~~~~~~~ikkg~--~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~----d~s-~s~~r~~~i~ 145 (320)
+......|+..+...+.++. .+++..+..+++-++..++ .++....+..+.+++...+. ... +...+...+.
T Consensus 578 l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 656 (971)
T 2x1g_F 578 LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 33456788888888888753 6888899999999887776 34455666666655554333 222 3333444445
Q ss_pred HHHHHHH----HcCC-C--------HH----HHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCc
Q 020839 146 CLAVITF----VGGN-D--------PE----ETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCS 208 (320)
Q Consensus 146 aLa~~~f----~~~~-~--------~~----~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~ 208 (320)
+++.++- ++.. + .+ -...+|.++..++.. . ..++.++-+++..|+-+++.+...
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~-------~~~~~v~e~~~~~~~~~~~~~~~~- 727 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-W-------VEEIDVLEAACSAMKHAITNLRSS- 727 (971)
T ss_dssp HHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-T-------TTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-c-------cccHHHHHHHHHHHHHHHHhhhhh-
Confidence 5543322 2221 0 11 123455555555532 1 246688999999999999887443
Q ss_pred cchhhHHhhHHHHHhhhcCC
Q 020839 209 LDSKKWQQSISYFSTLLDKD 228 (320)
Q Consensus 209 ~~~~~~~~~l~~l~~lL~s~ 228 (320)
+. .++...++.|...+.+.
T Consensus 728 ~~-p~l~~~~~~l~~~~~~~ 746 (971)
T 2x1g_F 728 FQ-PMLQDLCLFIVASFQTR 746 (971)
T ss_dssp -C-THHHHHHHHHHHHCC--
T ss_pred cc-ccHHHHHHHHHHHHhcC
Confidence 33 34555666666555553
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.14 E-value=40 Score=36.15 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=123.1
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
.+++.+..++--....|..+-..|...+........+. ..+++.+.+.++..+.. .-|+.++.-+|-..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 55555555543223345555556666665443322232 36777888888754433 44566677777666654334
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
|-++=.++|.+.....|... .+|.++.. ++-+++..-.++.+..++..+...+.+ ...+....+||..
T Consensus 90 e~~~~~~~~~~~~~~~dk~~-~v~~aa~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~kw~~k~~~l~~ 157 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDK-EIQSVASE--TLISIVNAVNPVAIKALLPHLTNAIVE---------TNKWQEKIAILAA 157 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSH-HHHHHHHH--HHHHHHHHSCGGGHHHHHHHHHHHHHH---------CCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCch-HHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHH
Confidence 44444556666666655543 45544433 444555555677777778877777744 2446788899999
Q ss_pred HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
..=|....|. .+ ...+.+.+|.+.+..-..-.+|..||..++-=+..+.-+
T Consensus 158 ~~~~~~~~~~-~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 158 FSAMVDAAKD-QV-ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHSHH-HH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhHH-HH-HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 9988877642 22 245668889999998888999999999999888776443
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=85.70 E-value=25 Score=33.47 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=74.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHH
Q 020839 82 HQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILE-ESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (320)
Q Consensus 82 ~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~-~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~ 160 (320)
..+.+.++.+++..+..|+.++.-++. +.......|.+ ...|.|.+.+.+ .++..+..++.+|.-+++- +++.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~---~~~~ 78 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFR---STTN 78 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSS---CHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC---CHHH
Confidence 456677777877778888888888774 32221224443 467889998885 3455666788888877762 2333
Q ss_pred HHHHHH-----HHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhh
Q 020839 161 TERTMQ-----IMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLL 225 (320)
Q Consensus 161 ~~~~m~-----~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL 225 (320)
...+.+ .|..++.. .+++.+.-.|..+-+-|... +..+ ..+++.++|.|+.+|
T Consensus 79 k~~i~~~G~i~~Lv~lL~~---------~~~~~~~~~a~~aL~nLa~~-~~~~--~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRR---------TGNAEIQKQLTGLLWNLSST-DELK--EELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTT---------CCCHHHHHHHHHHHHHHHTS-SSTH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhh---------CCCHHHHHHHHHHHHHHhcC-HHhH--HHHHhccHHHHHHHH
Confidence 333322 34444431 13455555554333334443 3322 245568899999999
No 75
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=83.08 E-value=40 Score=33.70 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=104.4
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCC-------------CHHHHHHHHHHH
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRG-------------SSREIALASHAI 103 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg-------------~~~E~~lA~~~l 103 (320)
.++...+.|.++....+.+++..|..+....+. .|. .....++..+.+.+-.+ ++-=+....+++
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-~~~-~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-EFK-TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH-HHT-THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH-HHH-HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 455566677888888999999888887765542 111 11122333333322222 122234555555
Q ss_pred hHHhhhcCCCCChHHHHHHhHHHHHHHhh---cCC--------Ch--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 020839 104 GLLALTVGYGENSREILEESVAPISQALK---SGF--------DS--SKIASLLECLAVITFVGGNDPEETERTMQIMWQ 170 (320)
Q Consensus 104 ~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~---d~s--------~s--~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~ 170 (320)
+.++-+ ++ .+..+.+.++|.++++ +.. ++ .+.-+|+.++-- +. ...+-.....+.+-.
T Consensus 266 ~~~~~~----~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~---l~-~~~~~~~~~~~~L~~ 336 (621)
T 2vgl_A 266 QCYPPP----ED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIH---HD-SEPNLLVRACNQLGQ 336 (621)
T ss_dssp GGSSSC----SS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHH---HC-CCHHHHHHHHHHHHH
T ss_pred HHhCCC----CC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHh---cC-CcHHHHHHHHHHHHH
Confidence 554421 11 2445555555655553 222 11 344444444322 22 345445556666666
Q ss_pred hhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc-CCCHHHHHHHHHHHHHHHHhc
Q 020839 171 IVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD-KDDRSIRIAAGEALALILETG 247 (320)
Q Consensus 171 i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~-s~d~~VRiAAGEaiALl~E~~ 247 (320)
++.+ .++.+.-.||.+...++..-|. ...++.+.+.+..+|. ++|..||.-|=+ ++|.+.
T Consensus 337 ~L~~----------~~~niry~aL~~l~~l~~~~~~----~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~---lL~~l~ 397 (621)
T 2vgl_A 337 FLQH----------RETNLRYLALESMCTLASSEFS----HEAVKTHIETVINALKTERDVSVRQRAVD---LLYAMC 397 (621)
T ss_dssp HSSC----------SCHHHHHHHHHHHHHHTTCTTT----HHHHHTTHHHHHHHHTTCCCHHHHHHHHH---HHHHHC
T ss_pred HhcC----------CCcchHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHhccCCCHhHHHHHHH---HHHHHc
Confidence 6633 5678888999999888876543 1455788899999998 889999986554 455554
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.02 E-value=40 Score=34.89 Aligned_cols=114 Identities=9% Similarity=0.090 Sum_probs=66.3
Q ss_pred HHHHHHhHHHHHHHhh---cCCChHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 117 REILEESVAPISQALK---SGFDSSKIASLLECLAVITFVGGNDPEE-TERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~---d~s~s~~r~~~i~aLa~~~f~~~~~~~~-~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
..++..+.+.+.+.+. ++.+-..|-+++.|+|.++=.+..+... +..+|+ ++.. -. .+.+.|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~~-l~------~~~~~vr~~ 508 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIPR-IS------ISNVQLADT 508 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGGG-SC------CCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHHh-CC------CCcHHHHHH
Confidence 3566666667777664 2334466777777777654332222211 222333 2211 10 135667666
Q ss_pred HHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 193 MVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
++..-+=....+... .+.+...++.|...|.+ ..||.+|+-++.-+.+.
T Consensus 509 ~~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 509 VMFTIGALSEWLADH---PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHHTHHHHHHC---HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 665555444433221 25677889999988854 88999999999877765
No 77
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=81.50 E-value=5.6 Score=42.72 Aligned_cols=183 Identities=10% Similarity=0.023 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhh--hcCCCCChHHHHHHhHHHHH
Q 020839 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLAL--TVGYGENSREILEESVAPIS 128 (320)
Q Consensus 51 s~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~l--tlg~~~~~~~i~~~~~~~L~ 128 (320)
..|-..+.+|++++.+.+-.. ....+...+++-+.+.....+.+|+.+++=+.. .--+.+..+.+++-+.|.|.
T Consensus 484 ~~~v~l~k~lf~l~~rn~~~~----~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~ 559 (997)
T 1vsy_5 484 SGNVSFFSLVILLISSGFCEL----NMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLA 559 (997)
T ss_dssp HHHHHHHHHHHHHHTTTTCCC----CGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcccchh----hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 347788888888775554322 234566667775555445566777775544332 22245567889999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCc
Q 020839 129 QALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCS 208 (320)
Q Consensus 129 ~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~ 208 (320)
+++.++-.++.. -....++-..+.+.|+.-..+++++|..+-.+-+.. .+++-..+..|+-+.-++..+. |+
T Consensus 560 ~~l~~~lt~et~--~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~-----~~ssf~~~~rl~ll~~~l~~~~-wr 631 (997)
T 1vsy_5 560 KCLDYELNHDAF--EIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRE-----SDAATHQTSKIYMLRSILMSME-FR 631 (997)
T ss_dssp HHHSSCCCTTHH--HHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCC-----SSCCCCCCSSHHHHHHHHHHHT-TS
T ss_pred HHHhccCCchhH--HHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCC-----CCcHHHHHHHHHHHHHHHHHhc-cc
Confidence 999954443332 135555555666678888888888774432110100 0111112223444444444443 23
Q ss_pred cchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 209 LDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 209 ~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
.. + ++..+..+. |+++...||-+-|..++.++.....
T Consensus 632 ~~-~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~ 668 (997)
T 1vsy_5 632 AP-D-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSN 668 (997)
T ss_dssp SC-C-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCC
T ss_pred cc-c-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcc
Confidence 32 1 234455554 8999999999999999999998653
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=80.79 E-value=34 Score=34.37 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCCHHHH-HHHHHHHhHHhhhcCCCCChHH---HH--HHhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYGENSRE---IL--EESVAPISQALKSGFDSSKIASLLECLAVITF 152 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~-~lA~~~l~Ll~ltlg~~~~~~~---i~--~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f 152 (320)
..+..+++-++.+...+. .-|+.++.-+| .|....+.. +. +...|+|.+++..++. ..+..++.+|+-++.
T Consensus 308 ~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~--ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~-~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 308 EVVRIYISLLKESKTPAILEASAGAIQNLC--AGRWTYGRYIRSALRQEKALSAIADLLTNEHE-RVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--SSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCH-HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHccCCCHHHHHHHHHHHHHHH--cCCccccHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHhC
Confidence 344555666655432222 34444444443 343211212 22 3568899999987654 555678889988876
Q ss_pred HcCCCHHHHHHHHHHHHHhhcC-CCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhH-HhhHHHHHhhhcCC--
Q 020839 153 VGGNDPEETERTMQIMWQIVHP-KLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKW-QQSISYFSTLLDKD-- 228 (320)
Q Consensus 153 ~~~~~~~~~~~~m~~l~~i~~~-~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~s~-- 228 (320)
-.. ....+. -..+-.++.- ..+...-.......++++|+.+.+=|++.=+... ..++ ...+|.|+.+|.+.
T Consensus 385 ~~~-~~~~I~--~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~--~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 385 DAR-NKELIG--KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA--KKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp TCS-CHHHHH--HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHHHHTCSSS
T ss_pred Chh-HHHHHH--hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHHHhCCCC
Confidence 432 222221 1223333321 0111100001245778888888877776522211 1222 25799999999986
Q ss_pred CHHHHHHHHHHHHHHH
Q 020839 229 DRSIRIAAGEALALIL 244 (320)
Q Consensus 229 d~~VRiAAGEaiALl~ 244 (320)
...++.+|+-+|.-+.
T Consensus 460 ~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 460 SEKEVRAAALVLQTIW 475 (584)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 7888888888877654
No 79
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=80.41 E-value=5.7 Score=40.43 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHH-HHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 78 ATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVA-PISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 78 ~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~-~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
..+...+ .-++.++++++..|+.+++-++- ++......+.+...+ +|.+.+.|+ +..+|.+++.||.-++.-+|.
T Consensus 34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCc
Confidence 4455544 34787788999999999999983 221112234444544 455566654 567888999999988887654
No 80
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.85 E-value=49 Score=34.37 Aligned_cols=165 Identities=11% Similarity=0.125 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcCC------CHHHHHHHHHHHhHHh--hh-cCCCCChH----H---HHHHhHHHHHHHhhcCCCh--
Q 020839 76 KFATLLHQCLSSIKRG------SSREIALASHAIGLLA--LT-VGYGENSR----E---ILEESVAPISQALKSGFDS-- 137 (320)
Q Consensus 76 ~~~tL~~~~~~~ikkg------~~~E~~lA~~~l~Ll~--lt-lg~~~~~~----~---i~~~~~~~L~~~i~d~s~s-- 137 (320)
+..+++..+...++.+ ++.-...+..++..++ +. ........ . .+..+.+.+.+++.+...+
T Consensus 119 ~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~ 198 (971)
T 2x1g_F 119 EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVW 198 (971)
T ss_dssp C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 4566777777777654 2233456777777665 21 11100111 1 1234555666666643322
Q ss_pred -----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc-----C---C-CCCccccCCCChHHHHHHHHHHHHHHhc
Q 020839 138 -----SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVH-----P---K-LGSNVVATRPSAPIITAMVSAWSFLLTT 203 (320)
Q Consensus 138 -----~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~-----~---~-~g~~~~~~~~~~~v~~AAL~aW~lLlT~ 203 (320)
..+..++.||.....++.-.......+++.+.. +. + + +|.+. .+++.+..+|+.+|.-++..
T Consensus 199 ~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~l~~i~~~ 274 (971)
T 2x1g_F 199 DAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMT---ADENELAESCLKTMVNIIIQ 274 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCC---HHHHHHHHHHHHHHHHHHHC
T ss_pred CccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccC---cCCcHHHHHHHHHHHHHHcC
Confidence 567788898886666532232234466776665 31 1 1 22111 14568889999999999987
Q ss_pred CCCCccchhhHHhhHHHHHhhh-------cCCCH---HHHHHHHHHHHHHHH
Q 020839 204 MDGCSLDSKKWQQSISYFSTLL-------DKDDR---SIRIAAGEALALILE 245 (320)
Q Consensus 204 l~~~~~~~~~~~~~l~~l~~lL-------~s~d~---~VRiAAGEaiALl~E 245 (320)
-++.+.. ..+...+|.+.+++ ...|. ++....++.+..+.|
T Consensus 275 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~ 325 (971)
T 2x1g_F 275 PDCHNYP-KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVE 325 (971)
T ss_dssp SGGGGCH-HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHH
T ss_pred ccccccH-HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4432222 44555566655432 33453 666667777666554
No 81
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=78.24 E-value=66 Score=33.23 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=84.9
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC--HHHHHHHHHHHhHHhhhcCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~--~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
.+...+..+.++ ..|..|-..|.++... . ...+......|+..+...+.++. .+++..+..+++.++...+ .+
T Consensus 530 vl~~l~~~l~~~--~V~~~A~~al~~l~~~-~-~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~ 604 (963)
T 2x19_B 530 VLPLVLHALGNP--ELSVSSVSTLKKICRE-C-KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VE 604 (963)
T ss_dssp THHHHHHHTTCG--GGHHHHHHHHHHHHHH-T-GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHHHHHhCCc--hHHHHHHHHHHHHHHH-H-HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HH
Confidence 444455555553 3455555555544421 1 12223345677777777777653 6778888999999887766 23
Q ss_pred ChHHHHHHhHHHHHHHhh----cCCChH---HHHHHHHHHH-HHHHHcCCCH------------------HHHH----HH
Q 020839 115 NSREILEESVAPISQALK----SGFDSS---KIASLLECLA-VITFVGGNDP------------------EETE----RT 164 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~----d~s~s~---~r~~~i~aLa-~~~f~~~~~~------------------~~~~----~~ 164 (320)
.....++.+.+++...+. .+.++. .+..++.||+ +...++.... ..+. .+
T Consensus 605 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (963)
T 2x19_B 605 EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV 684 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence 355666777766655443 222333 3445667774 3444442111 1122 33
Q ss_pred HHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCC
Q 020839 165 MQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDG 206 (320)
Q Consensus 165 m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~ 206 (320)
|..+..++.. . ..++.++-.++..|.-++..++.
T Consensus 685 ~~~~~~~l~~-~-------~~~~~v~e~~~~~l~~~~~~~~~ 718 (963)
T 2x19_B 685 FQLIQKVLSK-W-------LNDAQVVEAVCAIFEKSVKTLLD 718 (963)
T ss_dssp HHHHHHHHHH-H-------TTCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHh-c-------cCchHHHHHHHHHHHHHHHhhcc
Confidence 3333333322 1 13456777777788877766554
No 82
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=76.36 E-value=12 Score=38.12 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=91.4
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhh-cCCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT-VGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~lt-lg~~~~ 115 (320)
..+.....|..-+=.+|=-|--+|+.+++.+-..- .+. .... . -+|+|+++++++. .|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA---GR~--------~~~N----~--DLAvRLLCVLALDRFGDY-- 235 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG---DIQ--------IRVD----S--KLFSKIYEILVTDKFNDF-- 235 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-------CC--------CCCC----T--THHHHHHHHHHHBCCBBC--
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC---cee--------cccc----H--HHHHHHHHHHHhcccccc--
Confidence 44445555666666667666666666666554210 111 0011 1 7899999998864 3321
Q ss_pred hHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 020839 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~ 195 (320)
+.|...+.+|-.|+.+||.+ ..-..+ .+++..++.. . ..+...+.-++|-
T Consensus 236 ---------------VSDqVVAPVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~-l------~~~~WEVRHGGLL 285 (800)
T 3oc3_A 236 ---------------VDDRTVAPVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGF-L------DSGDWQVQFSGLI 285 (800)
T ss_dssp ---------------SSSSCBCHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTG-G------GCSCHHHHHHHHH
T ss_pred ---------------ccCeeeeehHHHHHHHHHHH-HhCChh-------HHHHHHHHhh-c------CCCCeeehhhhHH
Confidence 22444558899999999998 443333 2233333321 1 1366788888888
Q ss_pred HHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHH
Q 020839 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALA 241 (320)
Q Consensus 196 aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiA 241 (320)
|--.+--.+. . +...+|.+..-|...|-+||.+|++++.
T Consensus 286 GLKYL~DLL~------~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 286 ALGYLKEFVE------D-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp HHHHTGGGCC------C-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHH------H-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 8777711111 1 5678899999999999999999998864
No 83
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.46 E-value=25 Score=38.05 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=79.0
Q ss_pred HHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHcCCCHH-H---HHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 117 REILEESVAPISQALKSGF-DSSKIASLLECLAVITFVGGNDPE-E---TERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s-~s~~r~~~i~aLa~~~f~~~~~~~-~---~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
.+.+..+.+.|.+-+.... +-..+-+++.|+|.++ |+-.++ + +-.+|+++..+.+.+-| .+...+.
T Consensus 472 ~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa--g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~-------kd~k~~v 542 (1073)
T 3gjx_A 472 VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS--GAMHEEDEKRFLVTVIKDLLGLCEQKRG-------KDNKAII 542 (1073)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHSCS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH--CcCCcccccchHHHHHHHHhcccccccc-------cchhHHH
Confidence 4566667777776554332 3377777788888776 665532 2 34677777776654322 2233444
Q ss_pred HHHHHHHHHHhcCCCCcc-chhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 192 AMVSAWSFLLTTMDGCSL-DSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~~~-~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
|+.-.| ++...+.|-. ..++++..+.+|.+.+..++..|+-||..|++-+-+.-+
T Consensus 543 as~i~~--vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 543 ASNIMY--IVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHH--HHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHH--HHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 444444 5556555422 236778889999999999999999999999998877633
No 84
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.91 E-value=42 Score=33.93 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHhhcC-CCh---HHHHHHHHHHHHHH
Q 020839 118 EILEESVAPISQALKSG-FDS---SKIASLLECLAVIT 151 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~-s~s---~~r~~~i~aLa~~~ 151 (320)
.+...++|.|.++..-. +++ ..|..++.||.-++
T Consensus 416 ~ll~~~~P~l~~~~~~~~~~~~~~~l~~rAl~aLnNl~ 453 (684)
T 4gmo_A 416 ELIQTAVPQLIRLSNLPIDSDESLTIQSHALSALNNIS 453 (684)
T ss_dssp HHHHTHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 46677888888876643 332 67888999997554
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=72.83 E-value=54 Score=29.51 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=103.1
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhh----cCCCHHHHHHHHHHHhHHhhhcCCC--C
Q 020839 41 ALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSI----KRGSSREIALASHAIGLLALTVGYG--E 114 (320)
Q Consensus 41 ~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~i----kkg~~~E~~lA~~~l~Ll~ltlg~~--~ 114 (320)
....+..|.-+.|.++++.|.+.+.+.. +.....+|.+.+-+ ......=...++.++..+.-.++.. .
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~------~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP------RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH------HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555778888889999999999876533 12223333344421 1223332334444444443323211 1
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
-.+.-...+.|.|..-+-|+. ...|.++-..+-.+..++. .....+++..-+.+ .++-.....|
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ks----------KN~R~R~e~l 188 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKS----------KNARQRSECL 188 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGC----------SCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHcc----------CCHHHHHHHH
Confidence 122223457788866665544 3455555555555555432 22234444443433 3466777777
Q ss_pred HHHHHHHhcCCCCccchhhHHhhH---HHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 195 SAWSFLLTTMDGCSLDSKKWQQSI---SYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~~~~l---~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
..-+-++..-... . ..++ |.+..+|...|.+||-||=-++.-+|=.
T Consensus 189 ~~l~~li~~~G~~---~---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 189 LVIEYYITNAGIS---P---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHCSG---G---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC---c---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7777776664333 1 2467 9999999999999999999888877754
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=67.79 E-value=80 Score=29.51 Aligned_cols=141 Identities=9% Similarity=0.022 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHH
Q 020839 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEE 160 (320)
Q Consensus 81 ~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~ 160 (320)
+..+.+-+..+++--+.+|.|.++-+. .+ ++.+.+.+.+++.+.|......| +|+.|.. -. .-..++-
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~------~m~~~l~~~lk~~L~d~~pyVRk-~A~l~~~--kL-~~~~pe~ 173 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQIT--DS------TMLQAIERYMKQAIVDKVPSVSS-SALVSSL--HL-LKCSFDV 173 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CT------TTHHHHHHHHHHHHTCSSHHHHH-HHHHHHH--HH-TTTCHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCC--CH------HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH--HH-hccCHHH
Confidence 344555555555666678888877654 22 57888999999999887655444 4433322 22 2345665
Q ss_pred HHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH---------------------------HHHH--HHh---cCCCCc
Q 020839 161 TERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS---------------------------AWSF--LLT---TMDGCS 208 (320)
Q Consensus 161 ~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~---------------------------aW~l--LlT---~l~~~~ 208 (320)
+...++-+.+.+.. .++.|+..|+. .|+. ++- .+-+..
T Consensus 174 v~~~~~~l~~ll~d----------~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d 243 (355)
T 3tjz_B 174 VKRWVNEAQEAASS----------DNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE 243 (355)
T ss_dssp HHTTHHHHHHHTTC----------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHhcC----------CCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc
Confidence 55555555554432 22333332222 2332 111 111111
Q ss_pred cchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHH
Q 020839 209 LDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL 244 (320)
Q Consensus 209 ~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~ 244 (320)
. +......++.+..+|.+.+..|-..|..+|--+.
T Consensus 244 ~-~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 244 D-GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp --------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred c-hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 0 1112355677888888888888888877775543
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=67.18 E-value=71 Score=28.68 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=68.1
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
..+-..|+.+.+-+.+.|+.+-.-+ ..+..-+.+. .+.+.+..++|.-+.+-+.-.++.++-+.=+.|..
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il-~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-- 201 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIV-NVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-- 201 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHH-HHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH-HHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--
Confidence 3555667778777778888876544 3443333333 34455666776545666666666666665566642
Q ss_pred hHHHHHHhH---HHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 116 SREILEESV---APISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 116 ~~~i~~~~~---~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
..... |.+-+.+.| +++.+|-+|+.|+.-+-...|+
T Consensus 202 ----~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHHTT
T ss_pred ----ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhH
Confidence 22345 777777766 7889999999999977777664
No 88
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=65.05 E-value=6.4 Score=30.53 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
...+....|.|...+.++ ++..|..++.+|+-+ +.. . ...+...+.. +++.+..+|+.+
T Consensus 7 ~~~~~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~---~~~---~----~~~L~~~L~d----------~~~~vR~~A~~a 65 (131)
T 1te4_A 7 HHHHSSGLVPRGSHMADE-NKWVRRDVSTALSRM---GDE---A----FEPLLESLSN----------EDWRIRGAAAWI 65 (131)
T ss_dssp --------------CCSS-CCCSSSSCCSSTTSC---SST---T----HHHHHHGGGC----------SCHHHHHHHHHH
T ss_pred cccccccHHHHHHHhcCC-CHHHHHHHHHHHHHh---Cch---H----HHHHHHHHcC----------CCHHHHHHHHHH
Confidence 345566677788888764 455666777776632 221 1 2334444432 567888877765
Q ss_pred HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
.+-+ .. ..+++.|..+|+++|..||.+|.++|+-+
T Consensus 66 L~~~----~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 66 IGNF----QD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HGGG----CS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHhc----CC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4432 11 35689999999999999999999999865
No 89
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=64.80 E-value=15 Score=37.50 Aligned_cols=103 Identities=10% Similarity=0.035 Sum_probs=63.2
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHH
Q 020839 120 LEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSF 199 (320)
Q Consensus 120 ~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~l 199 (320)
+..+.|.+..-+.|. +-.+|+.|+.+|.=++ .++.+..+++.+|+.+...|.- ..+.+- -+.--+-
T Consensus 297 Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA-----~p~~l~~LL~iLWd~L~~LDDL-----SASTgS---VMdLLAk 362 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSP-DEDIKLLSAELLCHFP-----ITDSLDLVLEKCWKNIESEELI-----SVSKTS---NLSLLTK 362 (800)
T ss_dssp HHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC-----CSSTHHHHHHHHHHHHHTCCSC-----CTTHHH---HHHHHHH
T ss_pred HHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc-----chhhHHHHHHHHHHHhhhhccc-----chhhHH---HHHHHHH
Confidence 555666666666665 4577777777765444 5677889999999988663321 122222 2222222
Q ss_pred HHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHH
Q 020839 200 LLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (320)
Q Consensus 200 LlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEai 240 (320)
|.+.-+..... ...+|+|-.+|.++=.+||.|+-+++
T Consensus 363 L~s~p~~a~~d----p~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 363 IYRENPELSIP----PERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp HHHHCTTCCCC----SGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred HHcCCcccccC----hHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 22221211111 27889999999999999999976654
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=64.15 E-value=73 Score=27.74 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred hccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC-hHHHHHHh
Q 020839 45 LYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN-SREILEES 123 (320)
Q Consensus 45 l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~-~~~i~~~~ 123 (320)
+...|..+|..++..+..++...... ..+++.+..+++..+++=+.-++..+.-+.-..|.... .......+
T Consensus 112 l~~~k~~~~~~a~~~l~~~~~~~~~~-------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i 184 (278)
T 4ffb_C 112 LTSSRATTKTQSMSCILSLCGLDTSI-------TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPEL 184 (278)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTSSSS-------HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHH
Confidence 34456777888887776655432221 22345566667665554444445555444444553211 22233334
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC
Q 020839 124 VAPISQALKSGFDSSKIASLLECLAVITFVGG 155 (320)
Q Consensus 124 ~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~ 155 (320)
.+.+.+.+ +.+++.+|.+|+.+++-+--+.|
T Consensus 185 ~~~l~k~l-~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 185 LKHVPQLA-GHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp GGGHHHHH-TCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhC
Confidence 44444443 45678999999888876655444
No 91
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=60.83 E-value=41 Score=29.50 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=56.9
Q ss_pred hHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 123 SVAPISQALKSGFD-SSKIASLLECLAVITFVGGNDPEETERTM-----QIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 123 ~~~~L~~~i~d~s~-s~~r~~~i~aLa~~~f~~~~~~~~~~~~m-----~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
..|.|.+.+..+.. ...+..++.+|..+++= +.+....+. ..|-.+..+ +++.+...|..+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~---~~~~r~~I~~~G~Ip~LV~lL~s----------~~~~vq~~Aa~a 75 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKV----------QNEDVQRAVCGA 75 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTHHHHHHHGGGC----------CCHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC---CcHHHHHHHHcCCHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 46778888876654 35566667777666653 222222222 234444433 556777777555
Q ss_pred HHHHHhcCCCCccchhhH-HhhHHHHHhhhc-CCCHHHHHHHH
Q 020839 197 WSFLLTTMDGCSLDSKKW-QQSISYFSTLLD-KDDRSIRIAAG 237 (320)
Q Consensus 197 W~lLlT~l~~~~~~~~~~-~~~l~~l~~lL~-s~d~~VRiAAG 237 (320)
-.-|...-+..+ ..+. ...+|.|+.+|. +.+.++|-.|.
T Consensus 76 L~nLa~~~~~nk--~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~ 116 (233)
T 3tt9_A 76 LRNLVFEDNDNK--LEVAELNGVPRLLQVLKQTRDLETKKQIT 116 (233)
T ss_dssp HHHHHTTCHHHH--HHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCHHHH--HHHHHcCCHHHHHHHHccCCCHHHHHHHH
Confidence 444443211111 1122 257999999998 57889887664
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=60.13 E-value=94 Score=27.67 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH--
Q 020839 118 EILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS-- 195 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~-- 195 (320)
.+|.+++|.+.....+ +....|..++.=+.=+ |...++-....++.++.++.. +++.|+=.++.
T Consensus 49 ~ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~---~~~k~~l~~~~l~~L~~Ll~d----------~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHD-SNMEVRKQVVAFVEQV---CKVKVELLPHVINVVSMLLRD----------NSAQVIKRVIQAC 114 (257)
T ss_dssp GGHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHH---HHHCGGGHHHHHHHHHHHTTC----------SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 4788888888777666 4566665555443322 244666677788888887743 33444444444
Q ss_pred --HHHHHHhcCCCCcc----chhhHHhh---HHHHHhhhcCCCHHHHHHHHHHHHHH
Q 020839 196 --AWSFLLTTMDGCSL----DSKKWQQS---ISYFSTLLDKDDRSIRIAAGEALALI 243 (320)
Q Consensus 196 --aW~lLlT~l~~~~~----~~~~~~~~---l~~l~~lL~s~d~~VRiAAGEaiALl 243 (320)
-|-+++-.+-...- ....|+.. =..+..++++.+..||+.|=.-+--+
T Consensus 115 ~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 115 GSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 44444443332221 12456533 35577789999999999987655443
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=57.91 E-value=97 Score=27.11 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=109.6
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHhHHhhhcCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS-SREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~-~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
+.+++.|..|++-==..|.++|.-|..+...++ +-.+-+.+-+..-+||.- -.=..--++++|.++.-=
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~------el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---- 101 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE------DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---- 101 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG------GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH------HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC----
Confidence 467777777777766678888865554433222 233556666666667653 111112256777777542
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
.++...+.|+|..-..-+ ++..|+...++|+=+.-.. +.-.-....-+....++++ ..=.-+||
T Consensus 102 --Pe~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaran---P~l~~~v~rdi~smltskd----------~~Dkl~aL 165 (253)
T 2db0_A 102 --PELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKAN---PMLMASIVRDFMSMLSSKN----------REDKLTAL 165 (253)
T ss_dssp --HHHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHTSCSS----------HHHHHHHH
T ss_pred --HHHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhC---hHHHHHHHHHHHHHhcCCC----------hHHHHHHH
Confidence 367788888888877766 7888888888887655442 3322222222333333321 11122333
Q ss_pred HHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 195 SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
.|+-.. .... ...+...+|+|..||...|.-||.+|-|++.=+-+.
T Consensus 166 ---nFi~al-Gen~--~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 166 ---NFIEAM-GENS--FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp ---HHHHTC-CTTT--HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred ---HHHHHH-hccC--ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 344333 2222 245668899999999999999999999998877665
No 94
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=54.79 E-value=1.2e+02 Score=27.63 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHH
Q 020839 51 STREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREI-ALASHAIGLLALTVGYGENSREILEESVAPISQ 129 (320)
Q Consensus 51 s~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~-~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~ 129 (320)
..|.-+|+-++++|.+..-..++...+.++++.+..+.-..+..=+ ++|.=++-+-+...... +.+ --..+...+.+
T Consensus 163 ~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~-~~~-~~~~ll~~l~~ 240 (304)
T 3ebb_A 163 ANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH-NIE-GKAQCLSLIST 240 (304)
T ss_dssp HHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC-CHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC-Cch-HHHHHHHHHHH
Confidence 3489999999999998887777777888999988876543232222 22222332222222111 122 23346667777
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHH
Q 020839 130 ALKSGFDSSKIASLLECLAVITFV 153 (320)
Q Consensus 130 ~i~d~s~s~~r~~~i~aLa~~~f~ 153 (320)
++....+++..-.++.|||.+.+.
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHhC
Confidence 777666777777899999977764
No 95
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.90 E-value=80 Score=26.02 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aL 147 (320)
.-+.++.+-|+.+.+.++.+|+.++-.+.-..|..-..+-.-+++..-|.+++....++.+|..++.-+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 344566677777789999999999999988888421001111456666777776556666666665544
No 96
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=51.23 E-value=96 Score=32.19 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=82.3
Q ss_pred hhhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC
Q 020839 35 DTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 35 ~~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
.+.++..|-.+.+|.+++=+.-+..|.+.|... +...+..+++.+.+|+-.-. .=.-.-+-+++++-.....
T Consensus 9 ~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~-----l~~~r~~i~~~l~~~~~~~P-~Kt~vyAaLVgllN~k~pe-- 80 (771)
T 1h2v_C 9 EDHLESLICKVGEKSACSLESNLEGLAGVLEAD-----LPNYKSKILRLLCTVARLLP-EKLTIYTTLVGLLNARNYN-- 80 (771)
T ss_dssp -CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHcCChh--
Confidence 568999999999998876666677777666433 34456788888888876432 2234455667777665553
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVH 173 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~ 173 (320)
-++++.+.+...+++.+..+.-..+| .++.-||-+.-.+--.+..+..+++.|.+...
T Consensus 81 ~G~~lv~~l~~~f~~~l~~~~~~~~k-~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~ 138 (771)
T 1h2v_C 81 FGGEFVEAMIRQLKESLKANNYNEAV-YLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQ 138 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHccChHHHH-HHHHHHHHhccCCeecHHHHHHHHHHHHHhhh
Confidence 36788888888888888755322232 23333333322222466777777777777553
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=50.66 E-value=2.6e+02 Score=29.82 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=76.4
Q ss_pred HHHHHHhHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHcCCCHH-H---HHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 020839 117 REILEESVAPISQALKSGFD-SSKIASLLECLAVITFVGGNDPE-E---TERTMQIMWQIVHPKLGSNVVATRPSAPIIT 191 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~-s~~r~~~i~aLa~~~f~~~~~~~-~---~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~ 191 (320)
.++...+.+.|.+.+..... =..|-+++.|+|.+. +|.+++ + +-..|..+.++...+.| .++.++.
T Consensus 446 ~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa--~~~~~~~e~~~l~~vi~~Ll~l~~~~~~-------~d~k~~v 516 (1023)
T 4hat_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS--GTMSEDTEKRFVVTVIKDLLDLCVKKRG-------KDNKAVV 516 (1023)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHCCS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHHHHhhhcccc-------CcchHHH
Confidence 46777778888877765433 377888888888655 554443 1 22556666666543222 2234444
Q ss_pred HHHHHHHHHHhcCCCC-ccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 192 AMVSAWSFLLTTMDGC-SLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 192 AAL~aW~lLlT~l~~~-~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
+..-+|.+ ...+.| ....+++...+.+|.+.|..++..|+-+|..++.-+-|..+
T Consensus 517 ~~t~~~~l--Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 517 ASDIMYVV--GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHHHHH--HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 43344433 233332 11235677888888888877889999999999999988644
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=48.98 E-value=2.6e+02 Score=29.37 Aligned_cols=177 Identities=10% Similarity=0.054 Sum_probs=90.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC--HH----H---HHHHHHHHhHHhhhcCCCCChHH
Q 020839 48 KRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS--SR----E---IALASHAIGLLALTVGYGENSRE 118 (320)
Q Consensus 48 Krss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~--~~----E---~~lA~~~l~Ll~ltlg~~~~~~~ 118 (320)
....+|..|+..|.+.+.+++.. .-.+.+..|-..++..+.+.. +. + +.-.+.+++.++....++
T Consensus 61 ~~~~vr~~aa~~Lk~~i~~~W~~-l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----- 134 (1049)
T 3m1i_C 61 TNPQSKFIALSILDKLITRKWKL-LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----- 134 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCHHHHHHHHHHHHHHHHhhCcc-CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc-----
Confidence 34556888887777777665421 112233344444444443211 10 1 123455666666664432
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHH-HHcC---CC--H-------HH----HHHHHHHHHHhhcCCCCCccc
Q 020839 119 ILEESVAPISQALKSGFDSSKIASLLECLAVIT-FVGG---ND--P-------EE----TERTMQIMWQIVHPKLGSNVV 181 (320)
Q Consensus 119 i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~-f~~~---~~--~-------~~----~~~~m~~l~~i~~~~~g~~~~ 181 (320)
-|.++.|.|.+.+. +....+..++..|..++ -+.. .+ . +. ...++.++..++..
T Consensus 135 ~Wp~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~------- 205 (1049)
T 3m1i_C 135 NWPEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ------- 205 (1049)
T ss_dssp TCTTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cchHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 15566677776664 23333444555555444 2221 11 0 11 12223333444432
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHh-hhcCCCHHHHHHHHHHHHHHHHh
Q 020839 182 ATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFST-LLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 182 ~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~-lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
..++.+..+||.+..-.+.-+|...+.. ...++.+.+ ++ .+.++|.+|-+++.-+...
T Consensus 206 --~~~~~~~~~aL~~l~~~l~wi~~~~~~~---~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 206 --GSSSSLIVATLESLLRYLHWIPYRYIYE---TNILELLSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCTHHHHS---SSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHHHHHHHhhCCHHHHhh---hhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 1456788889988877776666432221 234454442 33 3789999999998888766
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=47.07 E-value=2.5e+02 Score=28.59 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=87.0
Q ss_pred hhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHHH
Q 020839 73 VEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALK-SGFDSSKIASLLECLAVIT 151 (320)
Q Consensus 73 v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~-d~s~s~~r~~~i~aLa~~~ 151 (320)
..+-+.+|++.+..+.--..-+.+.+++|-+ +=+ -..++=..-+|.|..+++ |..+.+....++.+|.++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~---sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l- 89 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSL---SKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI- 89 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHT---TTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHH---HHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH-
Confidence 4456677777776544321223333333333 212 124555667888888887 556775555677877665
Q ss_pred HHcCCCHHHHH-------H-HHHHHHHhhcCCCCCc--cc-cCCCChHHHHHHHHHHHHHHhcCCCCccchhhHH--hhH
Q 020839 152 FVGGNDPEETE-------R-TMQIMWQIVHPKLGSN--VV-ATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQ--QSI 218 (320)
Q Consensus 152 f~~~~~~~~~~-------~-~m~~l~~i~~~~~g~~--~~-~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~--~~l 218 (320)
|-+..+.+... + -+.+...++...++-. ++ -...+--+.-.|++.-..|++.-+.. ....++. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi 168 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGV 168 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccH
Confidence 22222211110 0 0111222222211100 00 01255567777888877777764431 2112222 568
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 020839 219 SYFSTLLDKDDRSIRIAAGEALALILETGSL 249 (320)
Q Consensus 219 ~~l~~lL~s~d~~VRiAAGEaiALl~E~~~~ 249 (320)
|+|+++|+.+..-||- |+|.||.++.+.
T Consensus 169 ~~Lv~lL~d~rE~iRn---eallLL~~Lt~~ 196 (651)
T 3grl_A 169 SRLMDLLADSREVIRN---DGVLLLQALTRS 196 (651)
T ss_dssp HHHHGGGGCSSHHHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHhCchHHHHH---HHHHHHHHHhcC
Confidence 9999999998888885 889999888774
No 100
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=46.55 E-value=1.9e+02 Score=27.02 Aligned_cols=208 Identities=17% Similarity=0.250 Sum_probs=112.9
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHH--hhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCC
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFN--NTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGE 114 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~--~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~ 114 (320)
...++|+.|.......+-.+|-.|.++|. ..+.++||...= +.++++.+..|+++-+..+++++.=+-.....
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G---L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-- 193 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEG---LSCLIRVGAAADHNYQSYILRALGQLMLFVDG-- 193 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH---HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhcc---HHHHHHHHHhcChHHHHHHHHHHHHHHhcccc--
Confidence 67788888887667778888888888775 345678886432 44666677777888888888876654433221
Q ss_pred ChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 020839 115 NSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMV 194 (320)
Q Consensus 115 ~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL 194 (320)
-..|... .+.++++ ..|++..+..-+...+++|+.++... +....++..|+
T Consensus 194 -m~gvvs~-~~fI~~l-------------------yslv~s~~~~V~k~AL~LL~v~V~~s--------e~~~~lv~~av 244 (339)
T 3dad_A 194 -MLGVVAH-SDTIQWL-------------------YTLCASLSRLVVKTALKLLLVFVEYS--------ENNAPLFIRAV 244 (339)
T ss_dssp -HHHHHHC-HHHHHHH-------------------HHGGGCSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHH
T ss_pred -ccchhCC-HHHHHHH-------------------HHHHcCccHHHHHHHHHHHHHHHccC--------cccchHHHHHH
Confidence 1233321 1122222 22222222222334455555555431 13345666676
Q ss_pred HHHHHHHhcCCCCccchhhHHhhHHHHHhhhc---CCCHHHHHHHHHHHHHHHHhcCCccccccccCCCCCChhhhhhhh
Q 020839 195 SAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD---KDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQ 271 (320)
Q Consensus 195 ~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~---s~d~~VRiAAGEaiALl~E~~~~~~~~~e~~~~~~~~~~~~~~~~ 271 (320)
.+.. +.- . ....+.|+.+|. +.|.++++. +++||--+... -.++ +.|
T Consensus 245 ~~v~---~~~-----~----~~p~~~Lv~~L~~~~~~D~elq~~---amtLIN~lL~~--apd~---------d~~---- 294 (339)
T 3dad_A 245 NSVA---STT-----G----APPWANLVSILEEKNGADPELLVY---TVTLINKTLAA--LPDQ---------DSF---- 294 (339)
T ss_dssp HHHH---HHH-----C----CCTTHHHHHHHTTTTSCCHHHHHH---HHHHHHHHHHH--CSSH---------HHH----
T ss_pred HHhh---hcc-----C----CCcHHHHHHHHhccCCCCHHHHHH---HHHHHHHHHhc--CCCh---------hHH----
Confidence 6631 110 0 112456777776 789999998 67887765332 0000 101
Q ss_pred hhHHHHHHHHHHHHhh-----hcCCCcchhhhHHHHHHHHHHHHH
Q 020839 272 GLKGKILNQVRNLSVE-----AGGKGSAKKDLTSQRNLFKDILEF 311 (320)
Q Consensus 272 ~~~~~l~~~l~~La~d-----~s~K~~sKkdrk~qRs~FRdil~t 311 (320)
.+++..|.++--+ .=+|+....|-+.|-.+|-.++..
T Consensus 295 ---~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE~~~~~ 336 (339)
T 3dad_A 295 ---YDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALKL 336 (339)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHHHHhhc
Confidence 1222222211110 013444567999999999887764
No 101
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.93 E-value=1.3e+02 Score=24.37 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=50.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcC-----CChHHHHHHHHHHHH-HHHHc
Q 020839 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSG-----FDSSKIASLLECLAV-ITFVG 154 (320)
Q Consensus 81 ~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~-----s~s~~r~~~i~aLa~-~~f~~ 154 (320)
+.++.+-|+.+++.++.+|+.++-.+.-..|..-..+---+++..-|.+++... +...+|..++.-+-- ..-|.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 446667777778999999999999999888842111111244556677777642 345666666555432 22233
Q ss_pred CCCHHHHHHHHHHH
Q 020839 155 GNDPEETERTMQIM 168 (320)
Q Consensus 155 ~~~~~~~~~~m~~l 168 (320)
+++. +.++.+.|
T Consensus 120 -~~p~-i~~~y~~L 131 (148)
T 1mhq_A 120 -EDIK-IRDAYQML 131 (148)
T ss_dssp -TCHH-HHHHHHHH
T ss_pred -CCch-HHHHHHHH
Confidence 3443 44444443
No 102
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.55 E-value=1.3e+02 Score=24.40 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=58.2
Q ss_pred hHHHHHHHhc-cchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALY-EKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~-eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.++..|+..+ +.-.+.--.+.-.|++.+.+... ..-.-+.++.+-|+.+++.++.+|+.++-.+.-..|..-.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~------~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFE------GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH 84 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSS------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4555555433 22222233344445555444331 1123345667777777799999999999998888884211
Q ss_pred hHHHHHHhHHHHHHHhhcC-----CChHHHHHHHHHHH
Q 020839 116 SREILEESVAPISQALKSG-----FDSSKIASLLECLA 148 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~-----s~s~~r~~~i~aLa 148 (320)
.+---+++..-|.+++.+. +...+|..++.-+-
T Consensus 85 ~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 85 DEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 1112334555677777652 44566666655443
No 103
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=43.45 E-value=1.9e+02 Score=30.87 Aligned_cols=120 Identities=5% Similarity=-0.019 Sum_probs=75.0
Q ss_pred HHHHHhHHHHHHHhhcCCC--h--HHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 020839 118 EILEESVAPISQALKSGFD--S--SKIASLLECLA-VITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITA 192 (320)
Q Consensus 118 ~i~~~~~~~L~~~i~d~s~--s--~~r~~~i~aLa-~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~A 192 (320)
.+...+.|.|..++..... + ..|..+++++| .+-|+ ...++-...+|+.+...+.. +.+.|..+
T Consensus 491 ~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl-~~~~~~L~~vl~~L~~~l~~----------~~~~v~~~ 559 (1023)
T 4hat_C 491 RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL-KAHWNFLRTVILKLFEFMHE----------THEGVQDM 559 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH-HHCHHHHHHHHHHHHHHTTC----------SCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhc----------CCHHHHHH
Confidence 4566777888877765332 3 23445567777 34444 33566666777776665532 45678888
Q ss_pred HHHHHHHHHhcCCCCccc------hhhHHhhHHHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 020839 193 MVSAWSFLLTTMDGCSLD------SKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS 248 (320)
Q Consensus 193 AL~aW~lLlT~l~~~~~~------~~~~~~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~~~ 248 (320)
|..+..-|...+...-.. +.++...+..+...++.-+..-+..+-|+|+.+.....
T Consensus 560 A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 888877777765432110 12445555566666665567777888999998877644
No 104
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=42.90 E-value=2.1e+02 Score=26.59 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 020839 77 FATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGN 156 (320)
Q Consensus 77 ~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~ 156 (320)
...+.-.+.+.+...+-.-+.+.+-.+..++=. + +++. -+-..|++=++++ ++-.|..++++|+-+ .
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~----~e~i-Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I-----~ 132 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--A----EDVI-IVTSSLTKDMTGK-EDSYRGPAVRALCQI-----T 132 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--S----SCGG-GGHHHHHHHHHSS-CHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--H----HHHH-HHHHHHHhhcCCC-cHhHHHHHHHHHhcC-----C
Confidence 345666778888876666666666655555433 1 1222 3445566655554 456676666666544 2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHH
Q 020839 157 DPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAA 236 (320)
Q Consensus 157 ~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAA 236 (320)
+++=++.+...+..-+.. .+|-|.-+|+-++.=|+-.. .+.++..++.+.++|.+.+.-|..
T Consensus 133 ~~~m~~~l~~~lk~~L~d----------~~pyVRk~A~l~~~kL~~~~------pe~v~~~~~~l~~ll~d~n~~V~~-- 194 (355)
T 3tjz_B 133 DSTMLQAIERYMKQAIVD----------KVPSVSSSALVSSLHLLKCS------FDVVKRWVNEAQEAASSDNIMVQY-- 194 (355)
T ss_dssp CTTTHHHHHHHHHHHHTC----------SSHHHHHHHHHHHHHHTTTC------HHHHHTTHHHHHHHTTCSSHHHHH--
T ss_pred CHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHHhccC------HHHHHHHHHHHHHHhcCCCccHHH--
Confidence 332233333334443422 66788777777766444332 345567889999999999999984
Q ss_pred HHHHHHHHHhcC
Q 020839 237 GEALALILETGS 248 (320)
Q Consensus 237 GEaiALl~E~~~ 248 (320)
-+++++||+..
T Consensus 195 -~Al~lL~ei~~ 205 (355)
T 3tjz_B 195 -HALGLLYHVRK 205 (355)
T ss_dssp -HHHHHHHHHHT
T ss_pred -HHHHHHHHHHh
Confidence 78999999955
No 105
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.38 E-value=1.6e+02 Score=24.31 Aligned_cols=125 Identities=8% Similarity=0.015 Sum_probs=68.0
Q ss_pred hHHHHHHHhc-cchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 37 LLDEALDALY-EKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 37 ~l~~~id~l~-eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
.+++.|+..+ +.-.+.--.+.-.|++.+.+... ..-.-+.++.+-|+.+++.++.+|+.++-.+.-..|..-.
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~------~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh 86 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELE------GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH 86 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4555665433 33322334444456666555431 1233445677778878899999999999999888884211
Q ss_pred hHHHHHHhHHHHHHHhhc-----CCChHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHH
Q 020839 116 SREILEESVAPISQALKS-----GFDSSKIASLLECLA-VITFVGGNDPEETERTMQIMW 169 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d-----~s~s~~r~~~i~aLa-~~~f~~~~~~~~~~~~m~~l~ 169 (320)
.+-.-+++..-|.+++.. .+...+|..++.-+- ...-|+ .++ .+.++.+.|-
T Consensus 87 ~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~-~~~-~i~~~y~~Lk 144 (171)
T 1juq_A 87 NEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP-EEA-KIKDAYHMLK 144 (171)
T ss_dssp HHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT-TCH-HHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC-CCc-HHHHHHHHHH
Confidence 111122345567777753 234566666655553 222333 344 3555554443
No 106
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=36.59 E-value=2.4e+02 Score=25.35 Aligned_cols=145 Identities=10% Similarity=0.007 Sum_probs=92.7
Q ss_pred hhHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCC
Q 020839 36 TLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGEN 115 (320)
Q Consensus 36 ~~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~ 115 (320)
..|+.+|..+.+|--.+-..|++.|..++..-+++. +.+.-+++++..-+++|++-=..-|+..++-+-++..
T Consensus 75 ~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~---~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~---- 147 (265)
T 3b2a_A 75 RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS---KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED---- 147 (265)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC----
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc----
Confidence 467777777777777777788888888887777654 4667888888888898875445567777777633322
Q ss_pred hHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 020839 116 SREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195 (320)
Q Consensus 116 ~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~ 195 (320)
+..+...|.+++ .+.+...+++++.+|--+.-+.++ .+-.....+=+-+++.+ .++.++-=||.
T Consensus 148 ----~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D-~~i~~~I~~eI~elL~~----------eD~~l~e~aLd 211 (265)
T 3b2a_A 148 ----SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSAD-SGHLTLILDEIPSLLQN----------DNEFIVELALD 211 (265)
T ss_dssp ----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSS-CCCGGGTTTTHHHHHTC----------SCHHHHHHHHH
T ss_pred ----hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 445666788888 556778887777776655544431 11111111112222222 56777777777
Q ss_pred HHHHHHhc
Q 020839 196 AWSFLLTT 203 (320)
Q Consensus 196 aW~lLlT~ 203 (320)
+---.+|.
T Consensus 212 ~Le~ils~ 219 (265)
T 3b2a_A 212 VLEKALSF 219 (265)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHcC
Confidence 77666665
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.22 E-value=49 Score=28.81 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLA 148 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa 148 (320)
.-+.++.+-|+.+++.++.+|+.++-.+.-..|..-..+-.-+++...|.+++...+...+|..++.-+-
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3445677777777899999999999999888884111111123344556667765566666655555443
No 108
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=32.06 E-value=2.4e+02 Score=24.05 Aligned_cols=93 Identities=11% Similarity=0.108 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCC---HHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHH
Q 020839 53 REKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGS---SREIALASHAIGLLALTVGYGENSREILEESVAPISQ 129 (320)
Q Consensus 53 Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~---~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~ 129 (320)
....+-.++++|.+..- -|++...-.|+..++.|+=..+ ..=+..|+++++.+|-+.|.. -..+...+...|.+
T Consensus 62 ~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~--y~~L~~RI~~tl~k 138 (196)
T 4atg_A 62 VLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS--YKTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT--STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc--CchHHHHHHHHHHH
Confidence 44444455555544442 1344445566666666663222 323469999999999999964 34567777778888
Q ss_pred HhhcCCCh-HHHHHHHHHHH
Q 020839 130 ALKSGFDS-SKIASLLECLA 148 (320)
Q Consensus 130 ~i~d~s~s-~~r~~~i~aLa 148 (320)
++.|+..+ ...-.|+.+|+
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLS 158 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHH
Confidence 88888765 55655555554
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=29.44 E-value=3.4e+02 Score=28.91 Aligned_cols=176 Identities=18% Similarity=0.135 Sum_probs=95.4
Q ss_pred hHHHHHHHhcc----chhHHHHHHHHHHHHHHHhhhhHH--H-hhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhh
Q 020839 37 LLDEALDALYE----KRGSTREKALSSIIEAFNNTLQHQ--F-VEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT 109 (320)
Q Consensus 37 ~l~~~id~l~e----Krss~Re~~L~~l~~~l~~~~~~~--~-v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~lt 109 (320)
.++.+.+.+.. ++...|+.++=++-.+.. ++..+ . -.+-+..+.+.+...+.++...|..++++++|=+..-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~-k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVF-RYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH-HHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHH-HHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 44555555432 233346666655444433 33211 1 1122455666677777888888899999999976531
Q ss_pred cCCCCChHHHHHHhHHHHHHHhhc-----CCCh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccC
Q 020839 110 VGYGENSREILEESVAPISQALKS-----GFDS-SKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVAT 183 (320)
Q Consensus 110 lg~~~~~~~i~~~~~~~L~~~i~d-----~s~s-~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~ 183 (320)
...++|.+.+.. .+.+ ..|.+|+.||--+. +..+ ...-++++.|+..+
T Consensus 471 ------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~~~p---~~v~~il~~i~~n~-------- 524 (1056)
T 1lsh_A 471 ------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---KRDP---RKVQEIVLPIFLNV-------- 524 (1056)
T ss_dssp ------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---GTCH---HHHHHHHHHHHHCT--------
T ss_pred ------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---hhch---HHHHHHHHHHhcCC--------
Confidence 245677777653 1222 56677888876544 2233 33455678888552
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCcc------------chhhHHhhHHHHHhhhcCCCHH---HHHHHHHHHHH
Q 020839 184 RPSAPIITAMVSAWSFLLTTMDGCSL------------DSKKWQQSISYFSTLLDKDDRS---IRIAAGEALAL 242 (320)
Q Consensus 184 ~~~~~v~~AAL~aW~lLlT~l~~~~~------------~~~~~~~~l~~l~~lL~s~d~~---VRiAAGEaiAL 242 (320)
..++.+.+||+..+ +-+-|+... +.....=....|..+..++++. ++.++--++-+
T Consensus 525 ~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a~~~ 595 (1056)
T 1lsh_A 525 AIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKM 595 (1056)
T ss_dssp TSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 36678888776533 333344211 1122222346677777777653 44444444433
No 110
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=29.08 E-value=5e+02 Score=26.80 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=58.3
Q ss_pred HHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhh-cCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHH-HH-H
Q 020839 70 HQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALT-VGYGENSREILEESVAPISQALKSGFDSSKIASL-LE-C 146 (320)
Q Consensus 70 ~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~lt-lg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~-i~-a 146 (320)
++|...-+..++..+.+++++|.-.+..+.+|.++-|.-+ +-. ...+++-+. .|.....+.+.+..|+.- ++ +
T Consensus 79 pe~G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~---~~~il~lL~-~Ll~~~~e~~~~q~r~D~~v~~v 154 (771)
T 1h2v_C 79 YNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIA---APSMVAMFE-NFVSVTQEEDVPQVRRDWYVYAF 154 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBC---HHHHHHHHH-HHHHGGGCSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeec---HHHHHHHHH-HHHHhhhhcCCcccchhHHHHHH
Confidence 5666677888999999999999988999999977766544 332 234444333 233333333334433331 11 2
Q ss_pred HHHHHHHcC----CCHHHHHHHHHHHHHhhcC
Q 020839 147 LAVITFVGG----NDPEETERTMQIMWQIVHP 174 (320)
Q Consensus 147 La~~~f~~~----~~~~~~~~~m~~l~~i~~~ 174 (320)
|..+-.+|. ...+....+|+-+..++..
T Consensus 155 L~~Lp~~G~~L~e~~~~~l~~lle~~~~yl~~ 186 (771)
T 1h2v_C 155 LSSLPWVGKELYEKKDAEMDRIFANTESYLKR 186 (771)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 222222232 2345667778878777743
No 111
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=27.41 E-value=2.4e+02 Score=22.68 Aligned_cols=78 Identities=12% Similarity=0.210 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHHHHHHHhcCCCCccchhhHHhhHHHHHhhhc---------CCC
Q 020839 159 EETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLD---------KDD 229 (320)
Q Consensus 159 ~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~aW~lLlT~l~~~~~~~~~~~~~l~~l~~lL~---------s~d 229 (320)
+...++|++||.-+.. .++.++-=||.---.|+-. .+..+. ..++..+..+..+.+ .+|
T Consensus 45 ~~~~eim~~L~kRL~~----------k~~~vk~KaL~lL~yL~~~-Gs~~f~-~~~r~~~~~Ik~l~~F~g~~dp~~G~d 112 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDN----------KSPIVKQKALRLIKYAVGK-SGSEFR-REMQRNSVAVRNLFHYKGHPDPLKGDA 112 (140)
T ss_dssp HHHHHHHHHHHHHHTS----------SSHHHHHHHHHHHHHHTTT-SCHHHH-HHHHHTTHHHHTTTTCCCCCCTTTSSC
T ss_pred hHHHHHHHHHHHHhcC----------CCcceeehHHHHHHHHHHh-CCHHHH-HHHHHhHHHHHHHHhcCCCCCcccccc
Confidence 3357899999998854 3345666677655555432 122222 233444444444443 222
Q ss_pred --HHHHHHHHHHHHHHHHhcC
Q 020839 230 --RSIRIAAGEALALILETGS 248 (320)
Q Consensus 230 --~~VRiAAGEaiALl~E~~~ 248 (320)
..||-+|-|.++|||.-.+
T Consensus 113 ~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 113 LNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHHHHHHHHHHTCCSS
T ss_pred hhHHHHHHHHHHHHHHhCcCC
Confidence 7999999999999976533
No 112
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=23.04 E-value=18 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=17.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHH
Q 020839 291 KGSAKKDLTSQRNLFKDILEFL 312 (320)
Q Consensus 291 K~~sKkdrk~qRs~FRdil~tv 312 (320)
+++.|+.||+-|-+|.+.-.-|
T Consensus 2 rkrpkrkrknarvtfaeaaeii 23 (26)
T 4g9j_C 2 RKRPKRKRKNARVTFAEAAEII 23 (26)
T ss_pred CcccccccccceeeHHHhhhHh
Confidence 4677999999999998765544
No 113
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.00 E-value=1e+02 Score=26.45 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 020839 79 TLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLL 144 (320)
Q Consensus 79 tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i 144 (320)
..+..+.+-|+.+++.++.+|+.++-.+.-..|..-..+-.-+++..-|.+++.+.....+|..++
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil 107 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKML 107 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 344456666777778889999998888888777310011111224555666666655556665443
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=22.30 E-value=4e+02 Score=23.45 Aligned_cols=166 Identities=10% Similarity=0.062 Sum_probs=90.6
Q ss_pred hHHHHHHHhccchhHHHHHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCCh
Q 020839 37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS 116 (320)
Q Consensus 37 ~l~~~id~l~eKrss~Re~~L~~l~~~l~~~~~~~~v~~~~~tL~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~ 116 (320)
-.+++|..+..+=+. =|.++.-|.++-..-+. ....+.++..+....+-...+.+.+|+.+++-+ . .
T Consensus 34 ~~~~~~~~~~~~~~~-~~~gf~~~~~~a~~~~~----~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~--~--~---- 100 (240)
T 3l9t_A 34 SMKQYVARLEKDFSL-IEHGFKEEEQRALTDYK----SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL--S--K---- 100 (240)
T ss_dssp CHHHHHHHHHHHHTC------CHHHHHHHHHHH----HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT--T--T----
T ss_pred HHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHH----hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc--c--C----
Confidence 567777776544332 25555544443322221 112345555555555555566678888876654 1 1
Q ss_pred HHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHH
Q 020839 117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA 196 (320)
Q Consensus 117 ~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aLa~~~f~~~~~~~~~~~~m~~l~~i~~~~~g~~~~~~~~~~~v~~AAL~a 196 (320)
..++.|.++..+.+...=.+|-.++.+++=.+. ..+++.+ +..+..-... +++-|.-+|+.+
T Consensus 101 ---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~--~~~pe~~---l~~~~~W~~d----------~n~~VRR~Ase~ 162 (240)
T 3l9t_A 101 ---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK--KIEYKKA---LPIIDEWLKS----------SNLHTRRAATEG 162 (240)
T ss_dssp ---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--HHCTTTT---HHHHHHHHHC----------SSHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--hcCHHHH---HHHHHHHhcC----------CCHHHHHHHHHh
Confidence 134677787744433333555555566653333 1123333 3333333332 667777777666
Q ss_pred ---HHHHHhcCCCCccchhhHHhhHHHHHhhhcCCCHHHHHHHHHHH
Q 020839 197 ---WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240 (320)
Q Consensus 197 ---W~lLlT~l~~~~~~~~~~~~~l~~l~~lL~s~d~~VRiAAGEai 240 (320)
|+.+ +....+. +..+|.+..+.+.++.=||.|-|=+|
T Consensus 163 ~rpW~~~----~~~k~dp---~~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 163 LRIWTNR----PYFKENP---NEAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp TCSGGGS----TTTTTCH---HHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred hHHHhcc----chhhcCH---HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 7743 3333332 46789999999999999999999865
No 115
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.98 E-value=3.1e+02 Score=21.63 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhHHhhhcCCCCChHHHHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 020839 81 LHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECL 147 (320)
Q Consensus 81 ~~~~~~~ikkg~~~E~~lA~~~l~Ll~ltlg~~~~~~~i~~~~~~~L~~~i~d~s~s~~r~~~i~aL 147 (320)
+.++.+-|+.+.+.++.+|+.++-.+.-..|..-..+-.-.++..-|.+++.. +++.+|..++.-+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li 109 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 34566667777788888888888888877773100000113444555566542 4455555554443
No 116
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=20.13 E-value=6.9e+02 Score=25.30 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=28.2
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 020839 216 QSISYFSTLLDKDDRSIRIAAGEALALILET 246 (320)
Q Consensus 216 ~~l~~l~~lL~s~d~~VRiAAGEaiALl~E~ 246 (320)
+.++.|.++|+++|-.||..|=..|..+...
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999988765
Done!