BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020840
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54S83|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Dictyostelium discoideum GN=midA PE=1 SV=1
Length = 484
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 170/285 (59%), Gaps = 23/285 (8%)
Query: 32 FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
F ++S S + N + ++ D EH A +S D+SGL P+ + +
Sbjct: 28 FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84
Query: 84 --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
++ K+L+ I K RG P+S+ +++EVLTNPK G+Y+N+DVFG GDFIT+PEVSQ+F
Sbjct: 85 PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143
Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
GEM+G+W + WE MG+P ++ +VE+GPGRGTLM D+LR FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203
Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSLA-GTPVSWHAALEQVPSGFPTIIVAHEFYD 260
+K Q NL + N + +TI G V+W LE+VP+ PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261
Query: 261 ALPVH--QFQKTTRGWCEKLVDIAEDSSLHQQ--LSFCCSAASGL 301
ALP+H +F + WCE LVD ED + H + L F S L
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVD--EDITEHGEYYLRFVQSKGPTL 304
>sp|Q9VGR2|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1
Length = 437
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 145/231 (62%), Gaps = 15/231 (6%)
Query: 72 NPPEHSHERKLESE-----LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
PP+ E ++E L K L+ I GPI VAEYM EVLTNP+AG+Y+NRDVFG
Sbjct: 33 EPPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFG 91
Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
EGDFITSPE+SQ+FGE+VG+W + W +MG P+ LVELGPGRGTL D+L+ +KFK
Sbjct: 92 REGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFK 151
Query: 187 NFTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAAL 242
E +H+VE SP L K Q + + E+ + +E T +S GT WH L
Sbjct: 152 QDAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRL 208
Query: 243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSF 293
E VP GF ++++AHEF+DALPVH+ Q W E L+D+A S Q+ SF
Sbjct: 209 EDVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVA-SSDGAQEASF 257
>sp|Q08BY0|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Danio rerio GN=ndufaf7 PE=2 SV=1
Length = 422
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/206 (47%), Positives = 135/206 (65%), Gaps = 11/206 (5%)
Query: 82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
+ ++KHL I GPISVAEYM E LTNP G+Y+ D+ GA GDFITSPE+SQ+F
Sbjct: 26 INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84
Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVEC 199
GE++GVW + W G+ + + LVELGPGRG+L +D+LR S+ K + IHLVE
Sbjct: 85 GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144
Query: 200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
SP L ++Q +C+ N N++ R+ ++ G P+ W+ ++E VP GF +I +A
Sbjct: 145 SPKLSQVQA---ECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200
Query: 256 HEFYDALPVHQFQKTTRGWCEKLVDI 281
HEF+DALP+H+FQ+T GW E LVDI
Sbjct: 201 HEFFDALPIHKFQRTENGWREVLVDI 226
>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1
Length = 437
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 146/238 (61%), Gaps = 12/238 (5%)
Query: 75 EHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFIT 133
E +R + L+ HL I K + GPI+V+EYM EVLTNP G+Y++ D+ G GDF+T
Sbjct: 35 EKPQKRTSANALLNHL--IFKIKSTGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVT 92
Query: 134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES-- 191
SPE+SQ+FGE++GVW + W G+P + LVELGPGRGTL DLLR S F +S
Sbjct: 93 SPEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCD 152
Query: 192 LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSG 248
+ +HLVE SP L +Q L K ++ E ++N V + I+ G PV W+ ++ VP+G
Sbjct: 153 ISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNG 211
Query: 249 FPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNW 306
+ + +AHEF+DALP+H+ QK GW E L+DI D L +L F + L K +
Sbjct: 212 Y-SFYIAHEFFDALPIHKLQKIKDGWREMLIDI--DPKLPDKLRFVLGSNMSLVAKTF 266
>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos
taurus GN=NDUFAF7 PE=2 SV=2
Length = 441
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 13/247 (5%)
Query: 67 RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
R ++ E + +++HL IK GPI+VAEYM+EVLTNP G+Y+NRD+ G
Sbjct: 24 RGKYFSSGNEPAENNTVTPMLRHLIYKIK-STGPITVAEYMKEVLTNPAKGYYMNRDMLG 82
Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
EGDFITSPE+SQMFGE++G+W + W G+ LVELGPG+GTL+ D+LR S+
Sbjct: 83 EEGDFITSPEISQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLG 142
Query: 187 NFTESLHI--HLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
+ ++ I HLVE S L ++Q L K E NA V + ++ +G PVSW+
Sbjct: 143 SLLKNCDISLHLVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRD 201
Query: 242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC---CSAA 298
L+ VP + + +AHEF+D LPVH+FQKT GW E LVDI D + +L F C+
Sbjct: 202 LQDVPKEY-SFYLAHEFFDVLPVHKFQKTPHGWREVLVDI--DPQVSDKLRFVLAPCATP 258
Query: 299 SGLQIKN 305
+G I+N
Sbjct: 259 AGAFIQN 265
>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1
Length = 430
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 137/214 (64%), Gaps = 10/214 (4%)
Query: 86 LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMV 145
L+ HL IK GPI+V+EYM EVLTNP G+Y++ D+ G GDF+TSPE+SQ+FGE++
Sbjct: 43 LLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHHDMLGEHGDFVTSPELSQIFGELL 101
Query: 146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTL 203
GVW + W G+P + LVELGPGRGTL DLLR S F S + +HLVE SP L
Sbjct: 102 GVWCISEWMSAGKPKSLQLVELGPGRGTLTDDLLRVFSNFGRLLNSCDISVHLVEVSPKL 161
Query: 204 QKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
+Q L K ++ E + N V ++ I+ G PV W+ ++ VP+GF + +AHEF+D
Sbjct: 162 SDIQAQRLTGKAIEVELDKNSPVYKKGITK-TGFPVCWYQDIQDVPTGF-SFYIAHEFFD 219
Query: 261 ALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC 294
ALP+H+ QKT GW E L+DI D + +L F
Sbjct: 220 ALPIHKLQKTKDGWREILIDI--DPGIPDKLRFV 251
>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus
musculus GN=Ndufaf7 PE=2 SV=4
Length = 436
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 152/248 (61%), Gaps = 10/248 (4%)
Query: 67 RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
R Y+ E + +++HL IK GPI+VAEYM+EVLTNP G+Y+++D+ G
Sbjct: 19 RGKCYSSGNEPAESNQVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVHQDMLG 77
Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
+GDFITSPE+SQ+FGE++GVW + W G+ LVELGPGRGTL AD+LR S+
Sbjct: 78 EKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLG 137
Query: 187 NF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
+ T ++ IHLVE S L ++Q L K E +A V + ++ +G PVSW+
Sbjct: 138 SVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWYRD 196
Query: 242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS--LHQQLSFCCSAAS 299
L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E VD+ +S L L+ C + A
Sbjct: 197 LKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQASDKLRFVLAPCATPAE 255
Query: 300 GLQIKNWR 307
++ R
Sbjct: 256 AFIQRDER 263
>sp|Q7L592|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1
Length = 441
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 10/221 (4%)
Query: 84 SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGE 143
+ +++HL IK GPI+VAEYM+EVLTNP G+Y+ RD+ G +GDFITSPE+SQ+FGE
Sbjct: 41 TPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGE 99
Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSP 201
++G+W + W G+ LVELGPGRGTL+ D+LR ++ + ++ + +HLVE S
Sbjct: 100 LLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQ 159
Query: 202 TLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEF 258
L ++Q L K E NA V + ++ +G P+SW+ L VP G+ + +AHEF
Sbjct: 160 KLSEIQALTLTKEKVPLERNAGSPVYMKGVTK-SGIPISWYRDLHDVPKGY-SFYLAHEF 217
Query: 259 YDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAAS 299
+D LPVH+FQKT +GW E VDI D + +L F + ++
Sbjct: 218 FDVLPVHKFQKTPQGWREVFVDI--DPQVSDKLRFVLAPSA 256
>sp|Q5XI79|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1
Length = 436
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 11/257 (4%)
Query: 59 ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
A T I SI R ++ E + +++HL IK GPI+VAEYM+EVLTNP G
Sbjct: 10 ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKG 68
Query: 118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
+Y++ D+ G +GDFITSPE+SQ+FGE++GVW + W G+ LVELGPGRGTL AD
Sbjct: 69 YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128
Query: 178 LLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLA 232
+LR S+ + T + IHLVE S L ++Q L E +A V + ++ +
Sbjct: 129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187
Query: 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS--SLHQQ 290
G P+SW+ L+ VP+G+ + +AHEF+D LPVH+FQKT GW E VDI S L
Sbjct: 188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDIDPQSPDKLRFV 246
Query: 291 LSFCCSAASGLQIKNWR 307
L+ C + A ++ R
Sbjct: 247 LAPCATPAEAFIQRDER 263
>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4
Length = 426
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 85 ELVKHLKGII--KFR-GGPISVAEYMEEVLTNPKAGFY----INRDVFGAEGDFITSPEV 137
E HLK + K R GPI+VAEYM+ ++ P G+Y ++ VFGA+GDFITSPE+
Sbjct: 30 EKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYGQFSKDQKVFGAKGDFITSPEL 89
Query: 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197
+Q+FGEM+GVW G LVELGPGR LM D+L +KF + + + +HLV
Sbjct: 90 TQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMNDVLNALAKFND--KDVSVHLV 147
Query: 198 ECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHE 257
E S L Q +L N+ D R + G + W+ +++ +P GF T+ + +E
Sbjct: 148 ETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNIYWYKSIDDIPDGF-TVFIGNE 206
Query: 258 FYDALPVHQFQKTTRGWCEKLVDIAEDSSL 287
F DALP+HQF K+ W E V++ +D L
Sbjct: 207 FLDALPIHQFHKSGDSWNEVYVNLTKDGDL 236
>sp|B0RUI3|RSMA_XANCB Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain B100) GN=rsmA PE=3
SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q8PCE3|RSMA_XANCP Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rsmA PE=3 SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q4UR39|RSMA_XANC8 Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=rsmA PE=3
SV=1
Length = 262
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q8PP25|RSMA_XANAC Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rsmA PE=3 SV=1
Length = 262
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L E + + L+ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALRIIHRDVLSVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 LADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q5GWB9|RSMA_XANOR Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
oryzae pv. oryzae (strain KACC10331 / KXO85) GN=rsmA
PE=3 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L E + + L H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRDVLSVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 LADGTPIRLVGNLPYNISSPILFHA 122
>sp|B2SPT3|RSMA_XANOP Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
oryzae pv. oryzae (strain PXO99A) GN=rsmA PE=3 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L E + + L H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRDVLSVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 LADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q2NZI4|RSMA_XANOM Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
oryzae pv. oryzae (strain MAFF 311018) GN=rsmA PE=3 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L E + + L H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRDVLSVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 LADGTPIRLVGNLPYNISSPILFHA 122
>sp|A7I2T7|MNMC_CAMHC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=mnmC PE=3
SV=1
Length = 667
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200
FGE V+ + E + NRV + ELG G G + L A+KFKN + LH +E
Sbjct: 24 FGESEFVFGSAVNEILKTQNRVIVAELGFGLGR---NFLNIAAKFKNSDKILHFVSIEKF 80
Query: 201 PTLQK 205
P LQK
Sbjct: 81 P-LQK 84
>sp|B0TTR5|RIMK_SHEHH Ribosomal protein S6 modification protein OS=Shewanella
halifaxensis (strain HAW-EB4) GN=rimK PE=3 SV=1
Length = 458
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE 190
F SP ++ +MVG G P V L+E G+G ++A+ + A N +
Sbjct: 282 FANSPVDTKDLIDMVG----------GAPLIVKLLEGTQGKGVVLAETTKAAESVINAFK 331
Query: 191 SLHIHLVECSPTLQKLQHHNLKC 213
SLH++L+ +++ Q +L+C
Sbjct: 332 SLHVNLL-VQEFIKEAQGKDLRC 353
>sp|Q3ZT31|SNX25_MOUSE Sorting nexin-25 OS=Mus musculus GN=Snx25 PE=2 SV=3
Length = 840
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES 191
ITS EV++ GE + + + RVNL E+G G T + R S+F+N
Sbjct: 514 ITSAEVTEENGEQMPCYFV----------RVNLQEVG-GVETKNWTVPRRLSEFQN---- 558
Query: 192 LHIHLVECSPTLQKLQ 207
LH L EC P+L+K+Q
Sbjct: 559 LHRKLSECVPSLKKVQ 574
>sp|Q5SIY4|LEU3_THET8 3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=leuB PE=1 SV=1
Length = 345
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 238 WHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
W +E+V G+P + + H++ DA+ +H + R
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPAR 229
>sp|P61494|LEU3_THET2 3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=leuB PE=3 SV=1
Length = 345
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 238 WHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
W +E+V G+P + + H++ DA+ +H + R
Sbjct: 195 WRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPAR 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,704,821
Number of Sequences: 539616
Number of extensions: 5218610
Number of successful extensions: 13566
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13526
Number of HSP's gapped (non-prelim): 31
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)