Query 020840
Match_columns 320
No_of_seqs 193 out of 901
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 2E-53 4.4E-58 411.6 17.1 186 85-289 3-189 (370)
2 KOG2901 Uncharacterized conser 100.0 2.5E-49 5.4E-54 378.6 12.1 221 73-303 24-244 (415)
3 PF02636 Methyltransf_28: Puta 100.0 5.5E-35 1.2E-39 271.1 15.5 149 144-305 1-153 (252)
4 PHA03412 putative methyltransf 97.2 0.0015 3.3E-08 61.6 8.3 69 126-211 28-96 (241)
5 PF05175 MTS: Methyltransferas 97.0 0.0072 1.6E-07 53.0 10.6 73 162-256 33-105 (170)
6 TIGR00740 methyltransferase, p 97.0 0.0062 1.4E-07 55.8 10.0 48 161-213 54-101 (239)
7 PRK15451 tRNA cmo(5)U34 methyl 96.6 0.02 4.4E-07 53.1 10.9 47 161-212 57-103 (247)
8 PLN02244 tocopherol O-methyltr 96.6 0.16 3.4E-06 49.7 17.1 63 141-211 94-161 (340)
9 PRK14896 ksgA 16S ribosomal RN 96.6 0.015 3.3E-07 54.4 9.5 43 161-212 30-72 (258)
10 PF00398 RrnaAD: Ribosomal RNA 96.5 0.0055 1.2E-07 57.5 6.4 44 160-212 30-73 (262)
11 TIGR03587 Pse_Me-ase pseudamin 96.5 0.028 6.1E-07 51.1 10.5 44 161-211 44-87 (204)
12 PRK06202 hypothetical protein; 96.4 0.038 8.1E-07 50.4 11.1 49 160-211 60-108 (232)
13 TIGR03438 probable methyltrans 96.4 0.011 2.3E-07 56.8 7.7 45 162-212 65-109 (301)
14 PRK01683 trans-aconitate 2-met 96.4 0.028 6.1E-07 51.8 10.3 51 154-211 25-75 (258)
15 smart00650 rADc Ribosomal RNA 96.4 0.0087 1.9E-07 52.2 6.4 48 156-212 9-56 (169)
16 PHA03411 putative methyltransf 96.3 0.035 7.6E-07 53.5 10.5 100 84-211 9-108 (279)
17 COG0030 KsgA Dimethyladenosine 96.3 0.016 3.5E-07 55.2 8.2 43 161-212 31-73 (259)
18 PF12847 Methyltransf_18: Meth 96.3 0.013 2.8E-07 46.5 6.3 43 162-211 3-45 (112)
19 PRK11036 putative S-adenosyl-L 96.2 0.048 1.1E-06 50.6 10.4 51 152-212 37-87 (255)
20 TIGR02072 BioC biotin biosynth 96.1 0.022 4.8E-07 50.7 7.8 62 144-212 18-79 (240)
21 TIGR02752 MenG_heptapren 2-hep 96.1 0.055 1.2E-06 48.9 10.4 53 154-212 39-91 (231)
22 PRK07580 Mg-protoporphyrin IX 96.1 0.043 9.4E-07 49.2 9.7 54 150-212 53-106 (230)
23 PRK00274 ksgA 16S ribosomal RN 96.0 0.02 4.3E-07 54.1 7.1 66 124-211 19-84 (272)
24 PF13649 Methyltransf_25: Meth 95.9 0.015 3.3E-07 46.0 4.9 45 164-212 1-45 (101)
25 PF13847 Methyltransf_31: Meth 95.9 0.016 3.5E-07 49.3 5.3 47 161-213 4-50 (152)
26 TIGR00755 ksgA dimethyladenosi 95.9 0.025 5.3E-07 52.7 7.0 47 157-212 26-72 (253)
27 PF08242 Methyltransf_12: Meth 95.8 0.0013 2.8E-08 51.7 -1.4 41 165-212 1-41 (99)
28 COG3963 Phospholipid N-methylt 95.8 0.026 5.6E-07 51.2 6.5 48 160-213 48-95 (194)
29 TIGR02469 CbiT precorrin-6Y C5 95.7 0.036 7.7E-07 44.3 6.6 50 156-212 15-64 (124)
30 TIGR03533 L3_gln_methyl protei 95.7 0.19 4.1E-06 48.0 12.3 71 128-212 96-166 (284)
31 TIGR02021 BchM-ChlM magnesium 95.6 0.1 2.3E-06 47.0 9.8 44 160-212 55-98 (219)
32 PRK11805 N5-glutamine S-adenos 95.5 0.19 4.1E-06 48.7 11.9 70 129-212 109-178 (307)
33 PRK08317 hypothetical protein; 95.4 0.076 1.7E-06 47.1 8.1 50 155-210 14-63 (241)
34 PRK14103 trans-aconitate 2-met 95.4 0.056 1.2E-06 50.1 7.5 54 149-209 18-71 (255)
35 PF13679 Methyltransf_32: Meth 95.4 0.11 2.3E-06 44.3 8.6 46 159-207 24-69 (141)
36 smart00138 MeTrc Methyltransfe 95.3 0.41 8.8E-06 45.3 13.3 122 81-210 22-151 (264)
37 PF05185 PRMT5: PRMT5 arginine 95.3 0.075 1.6E-06 54.3 8.8 65 138-205 163-228 (448)
38 PRK08287 cobalt-precorrin-6Y C 95.3 0.056 1.2E-06 47.7 6.8 48 157-211 28-75 (187)
39 PRK00121 trmB tRNA (guanine-N( 95.3 0.045 9.7E-07 49.4 6.2 66 135-212 20-85 (202)
40 PRK09328 N5-glutamine S-adenos 95.2 0.076 1.6E-06 49.2 7.7 46 160-212 108-153 (275)
41 PTZ00338 dimethyladenosine tra 95.2 0.056 1.2E-06 52.2 7.0 44 161-213 37-80 (294)
42 PF13489 Methyltransf_23: Meth 95.0 0.033 7.2E-07 46.5 4.4 39 159-206 21-59 (161)
43 PRK13942 protein-L-isoaspartat 95.0 0.084 1.8E-06 48.1 7.3 47 161-213 77-123 (212)
44 TIGR02987 met_A_Alw26 type II 94.9 0.065 1.4E-06 55.2 6.9 82 127-212 2-84 (524)
45 COG2263 Predicted RNA methylas 94.8 0.23 5E-06 45.7 9.5 67 130-212 23-89 (198)
46 PRK00107 gidB 16S rRNA methylt 94.8 0.13 2.8E-06 46.4 7.9 78 125-212 13-90 (187)
47 TIGR00536 hemK_fam HemK family 94.8 0.43 9.4E-06 45.3 11.8 44 162-212 116-159 (284)
48 PRK11705 cyclopropane fatty ac 94.8 0.27 5.9E-06 49.1 10.8 56 149-212 156-211 (383)
49 PRK13944 protein-L-isoaspartat 94.7 0.12 2.7E-06 46.6 7.6 46 162-213 74-119 (205)
50 PRK11088 rrmA 23S rRNA methylt 94.7 0.12 2.6E-06 48.5 7.7 46 162-211 87-132 (272)
51 PRK00216 ubiE ubiquinone/menaq 94.7 0.14 3E-06 45.8 7.8 46 161-212 52-97 (239)
52 PRK07402 precorrin-6B methylas 94.7 0.1 2.2E-06 46.5 6.8 45 161-212 41-85 (196)
53 PF07757 AdoMet_MTase: Predict 94.7 0.05 1.1E-06 45.8 4.4 40 140-180 36-77 (112)
54 TIGR00080 pimt protein-L-isoas 94.7 0.14 3E-06 46.4 7.8 48 160-213 77-124 (215)
55 PF13659 Methyltransf_26: Meth 94.6 0.099 2.1E-06 41.8 6.0 44 162-213 2-45 (117)
56 TIGR03704 PrmC_rel_meth putati 94.6 0.47 1E-05 44.5 11.3 45 161-212 87-131 (251)
57 KOG0820 Ribosomal RNA adenine 94.6 0.097 2.1E-06 50.7 6.7 50 156-214 54-103 (315)
58 PRK09489 rsmC 16S ribosomal RN 94.5 0.18 4E-06 49.6 8.8 45 162-213 198-242 (342)
59 TIGR03534 RF_mod_PrmC protein- 94.5 0.25 5.5E-06 44.8 9.2 44 162-212 89-132 (251)
60 PRK00377 cbiT cobalt-precorrin 94.5 0.12 2.5E-06 46.3 6.8 52 156-213 36-87 (198)
61 TIGR00138 gidB 16S rRNA methyl 94.5 0.12 2.7E-06 46.0 6.8 44 162-212 44-87 (181)
62 PRK15001 SAM-dependent 23S rib 94.4 0.17 3.7E-06 50.7 8.5 45 162-213 230-274 (378)
63 KOG1540 Ubiquinone biosynthesi 94.4 0.18 3.9E-06 48.5 8.2 52 157-209 97-148 (296)
64 PRK00312 pcm protein-L-isoaspa 94.4 0.18 3.8E-06 45.4 7.9 45 160-213 78-122 (212)
65 TIGR00091 tRNA (guanine-N(7)-) 94.4 0.093 2E-06 46.9 5.9 43 162-211 18-60 (194)
66 PRK14967 putative methyltransf 94.3 0.26 5.6E-06 44.9 8.7 43 162-212 38-80 (223)
67 PF02384 N6_Mtase: N-6 DNA Met 94.3 0.079 1.7E-06 50.4 5.5 74 127-211 24-97 (311)
68 PRK10258 biotin biosynthesis p 94.2 0.17 3.8E-06 46.5 7.5 42 161-211 43-84 (251)
69 PRK00811 spermidine synthase; 94.2 0.2 4.3E-06 47.9 8.0 73 128-212 49-121 (283)
70 TIGR00537 hemK_rel_arch HemK-r 94.2 0.2 4.3E-06 43.8 7.4 42 162-212 21-62 (179)
71 TIGR01934 MenG_MenH_UbiE ubiqu 94.1 0.22 4.8E-06 44.0 7.7 49 157-211 36-84 (223)
72 KOG2904 Predicted methyltransf 94.1 0.2 4.3E-06 48.7 7.7 70 128-209 121-190 (328)
73 PF08241 Methyltransf_11: Meth 94.1 0.11 2.5E-06 39.1 5.0 40 165-212 1-40 (95)
74 TIGR00417 speE spermidine synt 93.8 0.24 5.1E-06 46.8 7.7 72 129-212 46-117 (270)
75 PRK01544 bifunctional N5-gluta 93.8 0.29 6.3E-06 50.7 8.9 45 161-212 139-183 (506)
76 COG2890 HemK Methylase of poly 93.5 0.43 9.3E-06 45.7 8.9 43 163-212 113-155 (280)
77 TIGR01983 UbiG ubiquinone bios 93.5 0.27 6E-06 43.9 7.2 62 142-212 26-88 (224)
78 PRK05785 hypothetical protein; 93.5 0.25 5.3E-06 45.6 7.0 42 161-210 52-93 (226)
79 PRK11207 tellurite resistance 93.4 0.24 5.1E-06 44.5 6.7 42 162-212 32-73 (197)
80 cd02440 AdoMet_MTases S-adenos 93.4 0.16 3.5E-06 37.5 4.7 38 163-208 1-38 (107)
81 PTZ00098 phosphoethanolamine N 93.3 0.25 5.4E-06 46.5 6.9 49 156-212 48-96 (263)
82 PRK04457 spermidine synthase; 93.2 0.19 4.1E-06 47.5 5.9 47 159-212 65-111 (262)
83 COG2226 UbiE Methylase involve 92.9 0.37 8.1E-06 45.5 7.4 51 156-213 47-97 (238)
84 PLN02233 ubiquinone biosynthes 92.9 0.47 1E-05 44.6 8.0 47 159-211 72-118 (261)
85 TIGR03439 methyl_EasF probable 92.7 0.57 1.2E-05 46.0 8.6 49 161-212 77-125 (319)
86 TIGR00477 tehB tellurite resis 92.6 0.35 7.6E-06 43.3 6.6 42 161-211 31-72 (195)
87 COG4123 Predicted O-methyltran 92.6 0.29 6.2E-06 46.6 6.2 57 142-212 33-89 (248)
88 PLN02585 magnesium protoporphy 92.5 0.55 1.2E-05 45.9 8.1 43 161-212 145-187 (315)
89 TIGR00406 prmA ribosomal prote 92.3 0.89 1.9E-05 43.3 9.3 43 162-212 161-203 (288)
90 PF06325 PrmA: Ribosomal prote 92.2 0.93 2E-05 44.0 9.3 88 149-262 151-238 (295)
91 PF05206 TRM13: Methyltransfer 92.1 0.34 7.5E-06 46.2 6.1 46 154-201 11-57 (259)
92 COG2813 RsmC 16S RNA G1207 met 92.1 0.93 2E-05 44.3 9.1 75 126-213 126-204 (300)
93 PLN02396 hexaprenyldihydroxybe 92.0 0.51 1.1E-05 46.2 7.3 42 161-211 132-173 (322)
94 PRK13943 protein-L-isoaspartat 91.9 0.47 1E-05 46.5 7.0 46 161-212 81-126 (322)
95 PRK14968 putative methyltransf 91.9 0.64 1.4E-05 40.1 7.1 42 162-212 25-66 (188)
96 COG2518 Pcm Protein-L-isoaspar 91.9 0.54 1.2E-05 43.7 6.9 70 123-213 47-116 (209)
97 PLN02336 phosphoethanolamine N 91.7 1.2 2.5E-05 45.1 9.9 44 160-211 266-309 (475)
98 PF01135 PCMT: Protein-L-isoas 91.7 0.61 1.3E-05 42.9 7.1 48 160-213 72-119 (209)
99 TIGR01444 fkbM_fam methyltrans 91.3 0.37 8E-06 40.0 4.9 43 163-212 1-43 (143)
100 COG4106 Tam Trans-aconitate me 91.2 0.41 8.9E-06 45.2 5.4 98 155-279 25-129 (257)
101 smart00828 PKS_MT Methyltransf 91.2 0.43 9.4E-06 42.8 5.5 42 163-211 2-43 (224)
102 PRK04266 fibrillarin; Provisio 91.1 0.85 1.8E-05 42.4 7.5 49 155-210 67-115 (226)
103 COG2264 PrmA Ribosomal protein 91.1 1.1 2.3E-05 43.8 8.4 56 148-212 151-206 (300)
104 PRK00517 prmA ribosomal protei 91.0 0.64 1.4E-05 43.2 6.6 43 162-212 121-163 (250)
105 TIGR00438 rrmJ cell division p 91.0 0.31 6.7E-06 43.0 4.3 38 160-203 32-69 (188)
106 PRK05134 bifunctional 3-demeth 90.7 1.1 2.3E-05 40.6 7.7 43 160-211 48-90 (233)
107 PF01209 Ubie_methyltran: ubiE 90.6 0.38 8.2E-06 44.8 4.7 48 160-213 47-94 (233)
108 PF10294 Methyltransf_16: Puta 90.5 0.79 1.7E-05 40.5 6.4 63 142-212 24-89 (173)
109 PLN02366 spermidine synthase 90.3 1.5 3.2E-05 42.8 8.6 72 129-212 65-136 (308)
110 PRK14966 unknown domain/N5-glu 90.1 1.8 3.8E-05 44.3 9.2 44 162-212 253-296 (423)
111 PF01596 Methyltransf_3: O-met 89.9 1.5 3.2E-05 40.3 7.9 46 162-213 47-92 (205)
112 PRK12335 tellurite resistance 89.9 0.8 1.7E-05 43.5 6.3 42 162-212 122-163 (287)
113 PRK03522 rumB 23S rRNA methylu 89.9 1.1 2.4E-05 43.2 7.4 42 162-212 175-216 (315)
114 PF05401 NodS: Nodulation prot 89.8 1.6 3.5E-05 40.4 7.9 50 155-213 38-87 (201)
115 PLN02490 MPBQ/MSBQ methyltrans 89.4 1.1 2.4E-05 44.3 7.0 43 161-210 114-156 (340)
116 PRK10909 rsmD 16S rRNA m(2)G96 89.1 0.58 1.3E-05 42.7 4.6 44 162-213 55-98 (199)
117 PRK01581 speE spermidine synth 89.0 1.9 4.2E-05 43.3 8.5 59 139-209 134-192 (374)
118 PF07021 MetW: Methionine bios 88.9 1.1 2.5E-05 41.1 6.3 36 162-205 15-50 (193)
119 PF00891 Methyltransf_2: O-met 88.8 3.1 6.7E-05 38.0 9.2 63 134-203 69-136 (241)
120 TIGR02081 metW methionine bios 88.8 0.75 1.6E-05 40.8 4.9 38 162-207 15-52 (194)
121 PRK06922 hypothetical protein; 88.7 0.99 2.1E-05 48.5 6.6 43 162-211 420-462 (677)
122 PRK11188 rrmJ 23S rRNA methylt 88.6 0.69 1.5E-05 42.2 4.7 35 161-201 52-86 (209)
123 KOG0822 Protein kinase inhibit 88.6 0.97 2.1E-05 47.5 6.2 62 139-203 346-407 (649)
124 TIGR00452 methyltransferase, p 88.5 1.7 3.7E-05 42.5 7.6 37 161-205 122-158 (314)
125 PLN02781 Probable caffeoyl-CoA 88.5 1.6 3.4E-05 40.5 7.1 46 162-213 70-115 (234)
126 COG2519 GCD14 tRNA(1-methylade 88.4 1.4 3.1E-05 42.1 6.8 52 156-213 90-141 (256)
127 PRK14121 tRNA (guanine-N(7)-)- 88.3 1.2 2.6E-05 45.0 6.5 41 162-209 124-164 (390)
128 PLN02823 spermine synthase 87.9 2.7 5.9E-05 41.5 8.6 72 129-212 77-148 (336)
129 COG0421 SpeE Spermidine syntha 87.6 1.6 3.5E-05 42.2 6.7 73 131-215 52-124 (282)
130 PF12147 Methyltransf_20: Puta 87.6 5.6 0.00012 39.1 10.3 49 160-213 135-183 (311)
131 PRK13168 rumA 23S rRNA m(5)U19 87.5 1.5 3.2E-05 44.4 6.8 59 142-212 282-340 (443)
132 PRK11873 arsM arsenite S-adeno 87.5 1.2 2.5E-05 41.6 5.5 46 161-212 78-123 (272)
133 PLN02336 phosphoethanolamine N 87.1 1.4 3.1E-05 44.5 6.3 38 162-208 39-76 (475)
134 PRK03612 spermidine synthase; 87.0 2.2 4.8E-05 44.3 7.8 59 139-209 281-339 (521)
135 PF08123 DOT1: Histone methyla 86.6 2.1 4.4E-05 39.4 6.6 65 138-209 20-84 (205)
136 TIGR02143 trmA_only tRNA (urac 86.5 1.7 3.7E-05 42.9 6.4 41 163-212 200-240 (353)
137 TIGR02085 meth_trns_rumB 23S r 86.4 1.7 3.7E-05 43.1 6.4 42 162-212 235-276 (374)
138 PRK04148 hypothetical protein; 86.1 2.4 5.3E-05 36.7 6.4 55 144-210 3-58 (134)
139 PTZ00146 fibrillarin; Provisio 85.8 1.8 4E-05 42.1 6.1 38 161-204 133-170 (293)
140 PF02390 Methyltransf_4: Putat 85.7 2 4.2E-05 39.0 5.9 40 163-209 20-59 (195)
141 TIGR02716 C20_methyl_CrtF C-20 85.6 2.2 4.8E-05 40.6 6.5 44 160-211 149-192 (306)
142 COG2230 Cfa Cyclopropane fatty 85.0 5 0.00011 39.0 8.6 64 142-213 54-117 (283)
143 PF08704 GCD14: tRNA methyltra 84.8 3.3 7.1E-05 39.3 7.2 52 156-213 36-87 (247)
144 PRK05031 tRNA (uracil-5-)-meth 84.5 2.6 5.6E-05 41.7 6.6 58 142-212 192-249 (362)
145 TIGR00479 rumA 23S rRNA (uraci 84.4 3 6.5E-05 41.8 7.1 42 162-212 294-335 (431)
146 KOG4300 Predicted methyltransf 84.1 1.4 3.1E-05 41.5 4.2 47 156-213 72-121 (252)
147 PRK15068 tRNA mo(5)U34 methylt 83.3 1.8 3.8E-05 42.2 4.8 36 162-205 124-159 (322)
148 TIGR00095 RNA methyltransferas 83.3 1.8 3.8E-05 39.0 4.5 43 162-212 51-93 (189)
149 PF09243 Rsm22: Mitochondrial 83.3 4.6 9.9E-05 38.5 7.5 47 160-212 33-79 (274)
150 TIGR01177 conserved hypothetic 83.2 4.4 9.5E-05 39.3 7.5 66 131-212 160-225 (329)
151 PF02353 CMAS: Mycolic acid cy 83.2 4.9 0.00011 38.4 7.7 100 142-265 44-143 (273)
152 PF01564 Spermine_synth: Sperm 82.5 3.6 7.8E-05 38.6 6.4 74 128-213 49-122 (246)
153 COG0220 Predicted S-adenosylme 82.1 3.5 7.5E-05 38.6 6.1 37 162-205 50-86 (227)
154 COG2227 UbiG 2-polyprenyl-3-me 81.6 2.6 5.7E-05 40.0 5.1 78 162-266 61-141 (243)
155 KOG2361 Predicted methyltransf 81.3 1.7 3.7E-05 41.6 3.7 59 147-210 55-116 (264)
156 PF03291 Pox_MCEL: mRNA cappin 80.1 3.6 7.9E-05 40.5 5.7 44 160-211 62-105 (331)
157 KOG2811 Uncharacterized conser 79.7 3.2 7E-05 41.9 5.2 36 162-201 184-219 (420)
158 COG4121 Uncharacterized conser 79.6 1.5 3.2E-05 41.9 2.7 76 128-204 24-107 (252)
159 TIGR00478 tly hemolysin TlyA f 79.3 7.1 0.00015 36.5 7.1 48 148-203 62-110 (228)
160 PRK10901 16S rRNA methyltransf 79.2 6 0.00013 39.9 7.1 45 161-212 245-289 (427)
161 PLN02476 O-methyltransferase 79.0 6.5 0.00014 38.0 6.9 65 136-213 101-165 (278)
162 COG2242 CobL Precorrin-6B meth 77.8 7 0.00015 35.8 6.4 43 162-211 36-78 (187)
163 PTZ00357 methyltransferase; Pr 77.3 11 0.00025 41.2 8.6 39 161-202 701-739 (1072)
164 KOG1541 Predicted protein carb 76.4 4.4 9.6E-05 38.6 4.8 70 128-208 20-89 (270)
165 PRK13255 thiopurine S-methyltr 75.9 10 0.00022 35.0 7.0 38 160-206 37-74 (218)
166 PRK00536 speE spermidine synth 75.3 9.5 0.00021 36.5 6.9 60 140-213 57-116 (262)
167 TIGR03840 TMPT_Se_Te thiopurin 73.5 11 0.00024 34.5 6.7 37 161-206 35-71 (213)
168 KOG3191 Predicted N6-DNA-methy 73.5 14 0.00029 34.3 7.0 49 161-215 44-92 (209)
169 COG4301 Uncharacterized conser 72.8 10 0.00022 36.9 6.2 58 136-206 64-121 (321)
170 PLN02672 methionine S-methyltr 72.5 5.1 0.00011 45.5 4.9 44 162-212 120-163 (1082)
171 PF05219 DREV: DREV methyltran 71.5 7 0.00015 37.7 4.9 71 124-209 64-134 (265)
172 COG4122 Predicted O-methyltran 71.4 14 0.0003 34.6 6.8 46 162-213 61-106 (219)
173 TIGR00446 nop2p NOL1/NOP2/sun 70.6 8.6 0.00019 36.2 5.3 46 162-213 73-118 (264)
174 PRK11727 23S rRNA mA1618 methy 70.4 15 0.00032 36.2 7.1 47 160-213 114-160 (321)
175 PRK14904 16S rRNA methyltransf 70.3 12 0.00025 38.0 6.6 45 162-212 252-296 (445)
176 PLN03075 nicotianamine synthas 70.3 20 0.00043 35.0 7.9 47 161-212 124-170 (296)
177 COG0286 HsdM Type I restrictio 70.2 8.7 0.00019 39.7 5.7 70 128-211 165-234 (489)
178 PF14737 DUF4470: Domain of un 70.1 10 0.00022 30.5 5.0 52 157-211 20-73 (100)
179 PRK14902 16S rRNA methyltransf 69.2 12 0.00026 37.8 6.4 45 162-212 252-296 (444)
180 PF03848 TehB: Tellurite resis 68.5 19 0.00041 32.9 6.9 38 160-206 30-67 (192)
181 TIGR00563 rsmB ribosomal RNA s 68.4 15 0.00032 37.0 6.9 45 162-213 240-284 (426)
182 KOG1270 Methyltransferases [Co 65.6 6.4 0.00014 38.2 3.4 40 162-210 91-130 (282)
183 TIGR00308 TRM1 tRNA(guanine-26 64.7 17 0.00037 36.4 6.4 47 161-213 45-91 (374)
184 PRK04338 N(2),N(2)-dimethylgua 64.5 23 0.00049 35.6 7.2 44 162-212 59-102 (382)
185 KOG3924 Putative protein methy 62.8 11 0.00024 38.4 4.6 71 138-212 170-240 (419)
186 PF03514 GRAS: GRAS domain fam 62.1 18 0.0004 36.0 6.0 114 84-199 21-149 (374)
187 PLN02589 caffeoyl-CoA O-methyl 60.3 35 0.00076 32.3 7.3 64 137-213 63-126 (247)
188 PRK14903 16S rRNA methyltransf 58.4 24 0.00053 35.8 6.2 46 162-213 239-284 (431)
189 KOG0821 Predicted ribosomal RN 57.8 12 0.00027 35.8 3.7 41 156-204 46-86 (326)
190 COG0802 Predicted ATPase or ki 57.6 17 0.00038 32.1 4.4 53 138-199 11-65 (149)
191 PRK14901 16S rRNA methyltransf 56.9 33 0.00071 34.7 6.9 45 162-212 254-298 (434)
192 COG4976 Predicted methyltransf 56.4 15 0.00032 35.4 3.9 39 162-209 127-165 (287)
193 PF03602 Cons_hypoth95: Conser 55.9 21 0.00046 32.0 4.8 67 133-213 21-87 (183)
194 KOG3010 Methyltransferase [Gen 55.9 24 0.00052 34.0 5.3 38 163-209 36-73 (261)
195 PRK13256 thiopurine S-methyltr 55.0 47 0.001 31.1 7.1 48 153-209 36-83 (226)
196 PRK15128 23S rRNA m(5)C1962 me 54.4 20 0.00043 36.2 4.9 43 162-212 222-264 (396)
197 PF05891 Methyltransf_PK: AdoM 53.0 12 0.00025 35.2 2.7 46 160-213 55-100 (218)
198 KOG2244 Highly conserved prote 52.1 7.2 0.00016 41.4 1.3 42 103-144 364-416 (786)
199 COG4076 Predicted RNA methylas 52.0 37 0.00081 31.9 5.7 63 130-212 13-75 (252)
200 PRK11783 rlmL 23S rRNA m(2)G24 51.5 23 0.0005 38.3 5.0 43 162-212 540-582 (702)
201 KOG1271 Methyltransferases [Ge 51.4 22 0.00048 33.1 4.2 87 101-206 15-106 (227)
202 PF06080 DUF938: Protein of un 50.9 21 0.00045 33.2 4.0 40 163-209 28-67 (204)
203 PRK01747 mnmC bifunctional tRN 48.9 62 0.0013 34.4 7.7 68 141-209 34-111 (662)
204 PRK00050 16S rRNA m(4)C1402 me 48.1 70 0.0015 31.2 7.3 46 162-213 21-66 (296)
205 COG0500 SmtA SAM-dependent met 48.0 46 0.001 24.6 4.9 40 164-210 52-91 (257)
206 PRK01544 bifunctional N5-gluta 47.7 37 0.0008 35.3 5.7 36 161-203 348-383 (506)
207 COG5459 Predicted rRNA methyla 46.3 9.7 0.00021 38.7 1.1 42 161-208 114-155 (484)
208 KOG2899 Predicted methyltransf 46.0 37 0.00081 32.9 4.9 47 160-213 58-104 (288)
209 PF05148 Methyltransf_8: Hypot 45.5 21 0.00044 33.6 3.1 22 157-178 69-90 (219)
210 PTZ00387 epsilon tubulin; Prov 44.5 99 0.0021 32.0 8.2 74 111-187 85-162 (465)
211 COG1331 Highly conserved prote 43.8 18 0.00038 39.2 2.7 41 103-143 301-345 (667)
212 PF11784 DUF3320: Protein of u 43.6 42 0.00091 24.2 3.9 37 74-111 1-37 (52)
213 PLN02668 indole-3-acetate carb 43.0 62 0.0013 32.8 6.3 49 135-183 34-90 (386)
214 KOG2915 tRNA(1-methyladenosine 42.7 75 0.0016 31.3 6.5 45 162-212 107-151 (314)
215 KOG2901 Uncharacterized conser 41.3 0.17 3.8E-06 50.3 -11.7 158 87-272 52-226 (415)
216 PF08003 Methyltransf_9: Prote 38.6 37 0.00081 33.6 3.8 42 161-211 116-157 (315)
217 PF05724 TPMT: Thiopurine S-me 38.5 1.1E+02 0.0025 28.1 6.9 46 152-206 29-74 (218)
218 KOG1975 mRNA cap methyltransfe 36.4 52 0.0011 33.1 4.4 53 145-205 102-154 (389)
219 PF01170 UPF0020: Putative RNA 36.4 2.8E+02 0.006 24.5 8.8 51 162-213 30-83 (179)
220 COG3876 Uncharacterized protei 36.4 10 0.00022 37.8 -0.4 35 109-143 75-112 (409)
221 COG1352 CheR Methylase of chem 36.2 2.1E+02 0.0045 27.6 8.4 115 81-204 22-142 (268)
222 PF05050 Methyltransf_21: Meth 35.7 81 0.0018 26.0 5.0 40 166-210 1-42 (167)
223 KOG2651 rRNA adenine N-6-methy 35.2 1.2E+02 0.0025 31.4 6.7 36 163-206 156-191 (476)
224 KOG1774 Small nuclear ribonucl 34.6 17 0.00037 29.2 0.7 35 100-134 43-82 (88)
225 PRK11783 rlmL 23S rRNA m(2)G24 34.4 1.5E+02 0.0032 32.2 7.9 69 142-213 174-278 (702)
226 PRK10646 ADP-binding protein; 34.2 83 0.0018 27.8 5.0 41 135-183 11-53 (153)
227 KOG3987 Uncharacterized conser 34.1 20 0.00044 34.0 1.2 63 125-208 85-151 (288)
228 PF01269 Fibrillarin: Fibrilla 33.3 1.1E+02 0.0025 28.9 6.0 37 161-203 74-110 (229)
229 KOG3178 Hydroxyindole-O-methyl 33.2 1.1E+02 0.0024 30.7 6.2 77 125-211 135-219 (342)
230 cd02190 epsilon_tubulin The tu 32.1 2E+02 0.0043 28.8 7.9 50 138-187 78-130 (379)
231 KOG2793 Putative N2,N2-dimethy 30.5 61 0.0013 31.0 3.8 41 161-209 87-127 (248)
232 PHA01634 hypothetical protein 30.5 93 0.002 27.5 4.5 44 162-213 30-73 (156)
233 COG4262 Predicted spermidine s 30.0 90 0.0019 32.2 4.9 40 162-208 291-330 (508)
234 PF11187 DUF2974: Protein of u 29.7 59 0.0013 30.2 3.5 80 62-151 116-209 (224)
235 KOG3420 Predicted RNA methylas 29.2 35 0.00076 30.8 1.8 63 129-206 24-86 (185)
236 COG3897 Predicted methyltransf 29.0 45 0.00099 31.3 2.5 29 142-176 64-95 (218)
237 TIGR00150 HI0065_YjeE ATPase, 28.1 1.2E+02 0.0025 26.2 4.8 18 166-183 30-47 (133)
238 PRK10742 putative methyltransf 27.9 1.5E+02 0.0034 28.3 6.0 69 129-213 57-132 (250)
239 PRK10719 eutA reactivating fac 27.3 3.5E+02 0.0077 28.4 8.9 96 66-175 48-161 (475)
240 PF01402 RHH_1: Ribbon-helix-h 27.3 96 0.0021 20.2 3.3 27 83-111 7-33 (39)
241 PF01728 FtsJ: FtsJ-like methy 27.2 1.2E+02 0.0027 26.1 4.9 47 150-202 10-59 (181)
242 cd06059 Tubulin The tubulin su 26.9 2.5E+02 0.0054 27.9 7.6 49 139-187 69-120 (382)
243 PF03141 Methyltransf_29: Puta 26.8 55 0.0012 34.4 3.0 55 127-181 80-138 (506)
244 PF05958 tRNA_U5-meth_tr: tRNA 26.3 1E+02 0.0022 30.4 4.7 41 163-212 199-239 (352)
245 KOG2940 Predicted methyltransf 25.0 1.6E+02 0.0034 28.7 5.4 62 139-209 52-113 (325)
246 KOG1499 Protein arginine N-met 24.5 1.1E+02 0.0023 30.8 4.4 35 161-203 61-95 (346)
247 PF13578 Methyltransf_24: Meth 24.4 38 0.00082 26.6 1.1 34 165-202 1-34 (106)
248 KOG1500 Protein arginine N-met 24.4 1.1E+02 0.0024 31.3 4.4 34 161-202 178-211 (517)
249 KOG2918 Carboxymethyl transfer 24.4 1.8E+02 0.0038 29.2 5.8 66 133-205 59-127 (335)
250 PRK15455 PrkA family serine pr 23.1 3.1E+02 0.0066 29.9 7.6 98 86-186 3-131 (644)
251 KOG3877 NADH:ubiquinone oxidor 21.8 1.1E+02 0.0025 30.4 3.9 30 159-188 70-103 (393)
252 PRK08329 threonine synthase; V 21.7 2.9E+02 0.0063 27.0 6.8 68 131-201 177-247 (347)
253 COG0116 Predicted N6-adenine-s 21.4 4.4E+02 0.0096 26.9 8.1 33 142-177 176-208 (381)
254 PF01739 CheR: CheR methyltran 21.3 3.7E+02 0.008 24.4 7.0 50 160-209 31-82 (196)
255 PRK10611 chemotaxis methyltran 21.3 7.5E+02 0.016 23.9 10.1 117 81-209 45-165 (287)
256 cd00640 Trp-synth-beta_II Tryp 20.6 5.8E+02 0.012 23.1 8.2 44 151-199 144-188 (244)
257 KOG1661 Protein-L-isoaspartate 20.3 7.6E+02 0.016 23.6 8.8 49 162-215 84-132 (237)
258 PF07942 N2227: N2227-like pro 20.0 1.1E+02 0.0025 29.4 3.5 46 135-181 31-77 (270)
259 PRK06450 threonine synthase; V 20.0 4.1E+02 0.0089 26.1 7.5 70 131-201 166-238 (338)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-53 Score=411.65 Aligned_cols=186 Identities=37% Similarity=0.695 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceE
Q 020840 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL 164 (320)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~I 164 (320)
.+..+|++.|+.. |||||++||++|||+|++|||++..+||+.||||||||||++|||+||.|++++|++.|.|.++.|
T Consensus 3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l 81 (370)
T COG1565 3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL 81 (370)
T ss_pred cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 3566778888875 999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred EEecCCchhHHHHHHHHHh-cCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeecccc
Q 020840 165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE 243 (320)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~sle 243 (320)
||||||+|+||.|||++++ ..|++|+.++|+|||+||.|+++||++|+... ..+.|...++
T Consensus 82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e 143 (370)
T COG1565 82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE 143 (370)
T ss_pred EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence 9999999999999999995 57999999999999999999999999998631 3678888889
Q ss_pred cCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEE
Q 020840 244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQ 289 (320)
Q Consensus 244 elp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~ 289 (320)
++|.+.++|||+|||||||||++|.+++++|+|++|.-+.++++.+
T Consensus 144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~ 189 (370)
T COG1565 144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVF 189 (370)
T ss_pred hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceee
Confidence 9999889999999999999999999999999999996445566655
No 2
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-49 Score=378.63 Aligned_cols=221 Identities=64% Similarity=1.079 Sum_probs=200.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHH
Q 020840 73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152 (320)
Q Consensus 73 ~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~ 152 (320)
||.++++ +...|+++|...|+.+ ||||+++||..+|.||.+|||++++.||++||||||||++|+|||+|++|...+
T Consensus 24 p~~~sp~--~t~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e 100 (415)
T KOG2901|consen 24 PPDHSPE--ETPHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE 100 (415)
T ss_pred CCCCCcc--ccHHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence 5556655 4455999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccC
Q 020840 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA 232 (320)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~ 232 (320)
|+++|.|..+++||+|||+||||.|+|+.+.++.+ ..++.|+||+||.|.+.|.++|++.+..+.. +.+..+..
T Consensus 101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~--~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~----~~~~tt~s 174 (415)
T KOG2901|consen 101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKD--EDLSVHLVEVSPALSKLQAQNLCCTDESLSE----YKKGSTLS 174 (415)
T ss_pred hhhhCCccceeEEEeccchhHHHHHHHHHHHHhcC--ceeeEEEEEecHhHHHHhhcceeEeeccHHH----Hhhccccc
Confidence 99999999999999999999999999999977652 4578999999999999999999987665444 55556667
Q ss_pred CCCeEeecccccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEEEeecCCCccchhHH
Q 020840 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQI 303 (320)
Q Consensus 233 ~~~i~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~v~~p~~~~~~~~~~ 303 (320)
+.++.|+.+++++|.++ ++|+|||||||||||+|++..++|+|++|++++++.|+|+++|.++|+...+.
T Consensus 175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~s~tp~~~~~~ 244 (415)
T KOG2901|consen 175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLM 244 (415)
T ss_pred cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCCCCChhhhcCC
Confidence 88999999999999995 99999999999999999999999999999999999999999999999877664
No 3
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=100.00 E-value=5.5e-35 Score=271.08 Aligned_cols=149 Identities=37% Similarity=0.692 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCCC-cceEEEecCCchhHHHHHHHHHhcC-cCcccceeEEEEecChhhHHHHHHhccccccCCcCc
Q 020840 144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (320)
Q Consensus 144 ~IA~~i~~~w~~~g~p~-~l~IvEiGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~ 221 (320)
|||+|++++|+++|.|. +++|||+|||+|+||.|||+++++. |+++++++|+|||+||.|+++|+++|.....+
T Consensus 1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~---- 76 (252)
T PF02636_consen 1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK---- 76 (252)
T ss_dssp HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence 69999999999999986 5999999999999999999999875 99999999999999999999999999864321
Q ss_pred ccchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEc--CCCceEEEeecCCCccc
Q 020840 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSLHQQLSFCCSAAS 299 (320)
Q Consensus 222 ~~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~--~~g~f~~v~~p~~~~~~ 299 (320)
....+.+|.|+++++++| .+|||||||||||||||+|++++++|+|++|+++ .+++|.|+..|.+++..
T Consensus 77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~p~~~~~~ 147 (252)
T PF02636_consen 77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLSPLSTPSL 147 (252)
T ss_dssp -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEESSSSTCH
T ss_pred -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeCCCCCHHH
Confidence 122456899999888887 4899999999999999999999999999999997 46789999999988766
Q ss_pred hhHHHh
Q 020840 300 GLQIKN 305 (320)
Q Consensus 300 ~~~~~~ 305 (320)
..++..
T Consensus 148 ~~~l~~ 153 (252)
T PF02636_consen 148 EEYLPQ 153 (252)
T ss_dssp CCCTTC
T ss_pred HHHHHH
Confidence 555443
No 4
>PHA03412 putative methyltransferase; Provisional
Probab=97.19 E-value=0.0015 Score=61.60 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=49.4
Q ss_pred CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 126 G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
.+.|.|+|+++|...+ + +|. .+ ..+|+|+|||+|.|+..+.+.....+ ..+++.||+++...+
T Consensus 28 ~~~GqFfTP~~iAr~~----~-----i~~-~~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al~ 90 (241)
T PHA03412 28 SELGAFFTPIGLARDF----T-----IDA-CT---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYYK 90 (241)
T ss_pred ccCCccCCCHHHHHHH----H-----Hhc-cC---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHHH
Confidence 4679999999975543 1 121 12 24899999999999999877643222 247999999999887
Q ss_pred HHHHhc
Q 020840 206 LQHHNL 211 (320)
Q Consensus 206 ~Q~e~L 211 (320)
.-++.+
T Consensus 91 ~Ar~n~ 96 (241)
T PHA03412 91 LGKRIV 96 (241)
T ss_pred HHHhhc
Confidence 666554
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.03 E-value=0.0072 Score=52.96 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=48.0
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeecc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~s 241 (320)
-+|+|+|||+|.++.-+... .| ..+++.+|+|+...+..++++....-+ ...+.+.+-
T Consensus 33 ~~vLDlG~G~G~i~~~la~~---~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~---------------~v~~~~~d~ 90 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKR---GP----DAKVTAVDINPDALELAKRNAERNGLE---------------NVEVVQSDL 90 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHT---ST----CEEEEEEESBHHHHHHHHHHHHHTTCT---------------TEEEEESST
T ss_pred CeEEEecCChHHHHHHHHHh---CC----CCEEEEEcCCHHHHHHHHHHHHhcCcc---------------ccccccccc
Confidence 48999999999999877653 22 346999999999998888777542110 023444444
Q ss_pred cccCCCCCCEEEEEe
Q 020840 242 LEQVPSGFPTIIVAH 256 (320)
Q Consensus 242 leelp~~~~~~iiAN 256 (320)
++.++.+..-+|++|
T Consensus 91 ~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 91 FEALPDGKFDLIVSN 105 (170)
T ss_dssp TTTCCTTCEEEEEE-
T ss_pred cccccccceeEEEEc
Confidence 455553334678887
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.96 E-value=0.0062 Score=55.81 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=37.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
..+|+|+|||+|.++..+++.+.. | ..+++-||+|+.+.+.-++++..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~-p----~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQ-P----NVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCC-C----CCeEEEEeCCHHHHHHHHHHHHh
Confidence 358999999999999888775421 2 35799999999998877776653
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.64 E-value=0.02 Score=53.06 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=36.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
..+|+|+|||+|.++..+++.+. .| ..+++.||+||.+.+.-++++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~-~~----~~~v~gvD~S~~ml~~A~~~~~ 103 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIH-HD----NCKIIAIDNSPAMIERCRRHID 103 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHH
Confidence 35899999999999888766432 12 3479999999999987777664
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=96.58 E-value=0.16 Score=49.65 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHcCC-----CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 141 FGEMVGVWAMCLWEQMGQ-----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 141 FGe~IA~~i~~~w~~~g~-----p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
+.++-.+.+..+.+..+. ....+|+|+|||.|.++..+.+.. ..+++-||+|+.+.+.-+++.
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~ 161 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALA 161 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHH
Confidence 334433444444444544 334689999999999988776532 236899999999877655544
No 9
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.55 E-value=0.015 Score=54.45 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=36.0
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-+|+|+|||.|.|+..+++.. .+++.||+++.+.+..++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~---------~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA---------KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHhc
Confidence 3589999999999999987641 268999999999998887764
No 10
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.53 E-value=0.0055 Score=57.55 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=37.5
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+...|+|+|||.|.|...+++.. -++++||+.+.+.+.-++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc---------CcceeecCcHhHHHHHHHHhh
Confidence 45699999999999999998865 258999999999988777665
No 11
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.49 E-value=0.028 Score=51.14 Aligned_cols=44 Identities=27% Similarity=0.195 Sum_probs=34.4
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.-+|+|+|||+|.++..+.+.+ | ..+++-||+|+.+.+.-++++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhC
Confidence 3589999999999888876542 2 246999999999988776654
No 12
>PRK06202 hypothetical protein; Provisional
Probab=96.43 E-value=0.038 Score=50.44 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=37.4
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.+.+|+|+|||+|.++..+.+..++.. ...+++.||+|+.+.+.-+++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhcc
Confidence 446899999999999988877665321 1247999999999988766654
No 13
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.41 E-value=0.011 Score=56.82 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.0
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||+|+.+.-+++.+.. ..+|+-||+|+.+-+.-+++|.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA 109 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999999999988643 2469999999998655555553
No 14
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.41 E-value=0.028 Score=51.82 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
..++.....+|+|+|||+|.++..+.+.. | ..+++-||+|+.+.+.-++++
T Consensus 25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~----~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 25 ARVPLENPRYVVDLGCGPGNSTELLVERW---P----AARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred hhCCCcCCCEEEEEcccCCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHhC
Confidence 33444445699999999999988776542 2 247999999999887666654
No 15
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.39 E-value=0.0087 Score=52.16 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=37.5
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+....-+|+|+|||.|.++..+++. ..+++.||+++.+.+.-++++.
T Consensus 9 ~~~~~~~~vLEiG~G~G~lt~~l~~~---------~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 9 ANLRPGDTVLEIGPGKGALTEELLER---------AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred cCCCCcCEEEEECCCccHHHHHHHhc---------CCeEEEEECCHHHHHHHHHHhc
Confidence 34333458999999999999998764 1268999999999887777664
No 16
>PHA03411 putative methyltransferase; Provisional
Probab=96.31 E-value=0.035 Score=53.54 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcce
Q 020840 84 SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVN 163 (320)
Q Consensus 84 ~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~ 163 (320)
..|-+.+...|... ..++-.+ .+-.|+ .|+... ++..|-|+|+..|-..| ++ . .. + .-+
T Consensus 9 ~~l~~~~~~l~~~~-~~~~~~~--~~~v~~----~~~g~~-~~~~G~FfTP~~i~~~f--~~-------~--~~-~-~gr 67 (279)
T PHA03411 9 QKLHDRVMELINSD-RPLTYEE--KEFCYN----NYHGDG-LGGSGAFFTPEGLAWDF--TI-------D--AH-C-TGK 67 (279)
T ss_pred HHHHHHHHHHHhCC-cccccCc--HHHHHH----hccccc-ccCceeEcCCHHHHHHH--Hh-------c--cc-c-CCe
Confidence 45666677777764 4454331 222222 233322 66789999999985444 11 1 11 1 238
Q ss_pred EEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
|+|+|||+|.+...+++.. + ..+++.||+||.+.+.-++++
T Consensus 68 VLDLGcGsGilsl~la~r~---~----~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 68 VLDLCAGIGRLSFCMLHRC---K----PEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred EEEcCCCCCHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHhC
Confidence 9999999999887765531 1 247999999999988776654
No 17
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.016 Score=55.23 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=36.9
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-.|+|||||.|.|..-+++... +++-||+.+.|.+.-++++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---------~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---------RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---------eEEEEEeCHHHHHHHHHhcc
Confidence 46899999999999999887532 48999999999998888775
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.28 E-value=0.013 Score=46.51 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=35.8
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
-+|+|+|||+|.++..+++.. | ..+++-||+||.+.+.-++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~---~----~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF---P----GARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH---T----TSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcC---C----CCEEEEEeCCHHHHHHHHHHH
Confidence 389999999999999888732 2 246999999999998888877
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.16 E-value=0.048 Score=50.58 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 152 ~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+...++ +.+.+|+|+|||+|.++..+.+. ..+++.||+|+.+.+.-++++.
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 333344 34469999999999988777542 1368999999999887666654
No 20
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.15 E-value=0.022 Score=50.75 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 144 ~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.++..+.+.+.......+.+|+|+|||+|.+...+++.. | ..+|+.||+|+.+.+..++++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence 344555554444332334689999999999888776543 2 2369999999999877766553
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.14 E-value=0.055 Score=48.91 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=38.6
Q ss_pred HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+.++....-+|+|+|||+|.++..+.+.+. ...+++-||+|+.+.+.-++++.
T Consensus 39 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGTADWSIALAEAVG------PEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHH
Confidence 334443345899999999999988876542 22479999999998876666554
No 22
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.14 E-value=0.043 Score=49.24 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 150 ~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.......+.+...+|+|+|||+|.++..+++. ..+|+.||+|+.+.+.-++++.
T Consensus 53 ~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---------~~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 53 LSWLPADGDLTGLRILDAGCGVGSLSIPLARR---------GAKVVASDISPQMVEEARERAP 106 (230)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 33333333444569999999999988776542 1359999999999877666654
No 23
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.00 E-value=0.02 Score=54.14 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=45.5
Q ss_pred CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.+|. .|++.+.+. .++++. ++....-+|+|+|||+|.++..+++.. + +++.||+++.+
T Consensus 19 ~~gq--~fl~~~~i~--------~~i~~~---l~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~avE~d~~~ 76 (272)
T PRK00274 19 SLGQ--NFLIDENIL--------DKIVDA---AGPQPGDNVLEIGPGLGALTEPLLERA---A------KVTAVEIDRDL 76 (272)
T ss_pred ccCc--CcCCCHHHH--------HHHHHh---cCCCCcCeEEEeCCCccHHHHHHHHhC---C------cEEEEECCHHH
Confidence 3554 488877652 222221 232233589999999999999887752 1 58999999999
Q ss_pred HHHHHHhc
Q 020840 204 QKLQHHNL 211 (320)
Q Consensus 204 r~~Q~e~L 211 (320)
.+.-++++
T Consensus 77 ~~~~~~~~ 84 (272)
T PRK00274 77 APILAETF 84 (272)
T ss_pred HHHHHHhh
Confidence 88777665
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.88 E-value=0.015 Score=46.03 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=32.0
Q ss_pred EEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
|+|+|||+|+....+++.+..-| ..+|+.||+|+.+-+.=+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~----~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGP----SSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcc----cceEEEEECCHHHHHHHHHhch
Confidence 79999999999999998862222 2579999999999877666654
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.86 E-value=0.016 Score=49.28 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.2
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
..+|+|+|||+|.++..+++.+ ....+|+-||+|+.+.+.-++++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHhhccccc
Confidence 4689999999999999887622 2234799999999998887776543
No 26
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.85 E-value=0.025 Score=52.70 Aligned_cols=47 Identities=30% Similarity=0.493 Sum_probs=36.0
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+....-.|+|+|||.|.++.-+++.. + .++.||+++.+.+.-++++.
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHhC
Confidence 33334589999999999999887653 1 38999999999877666553
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=95.85 E-value=0.0013 Score=51.70 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred EEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+|+|||+|.++..|++.+ ...+|+.||+||.+.+.-++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~ 41 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLA 41 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHH
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhh
Confidence 699999999999999875 33589999999999744444443
No 28
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.80 E-value=0.026 Score=51.18 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=37.0
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
..+.|+|+|||+|-+.+.||+.--. | -..++||.|+.....-.++...
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~-~-----~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVR-P-----ESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCC-c-----cceEEEEeCHHHHHHHHHhCCC
Confidence 3468999999999999999986321 2 2578999999998776665543
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.72 E-value=0.036 Score=44.34 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=36.8
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
++.+..-+|+|+|||.|.++..+++.. |. .+++.||.|+.+.+.-++++.
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~ 64 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLV---PN----GRVYAIERNPEALRLIERNAR 64 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHC---CC----ceEEEEcCCHHHHHHHHHHHH
Confidence 343333489999999999999887643 22 479999999998876555443
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.67 E-value=0.19 Score=48.04 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
.|-|+.-|+...+.-+.+..++ .. ..+.+|+|+|||+|.++..+.+.. | ..+++.||+|+...+.-
T Consensus 96 ~~vlipr~~te~lv~~~l~~~~-----~~--~~~~~vLDlG~GsG~i~~~la~~~---~----~~~v~avDis~~al~~A 161 (284)
T TIGR03533 96 ERVLIPRSPIAELIEDGFAPWL-----EP--EPVKRILDLCTGSGCIAIACAYAF---P----EAEVDAVDISPDALAVA 161 (284)
T ss_pred CCCccCCCchHHHHHHHHHHHh-----cc--CCCCEEEEEeCchhHHHHHHHHHC---C----CCEEEEEECCHHHHHHH
Confidence 3567766666444444433222 11 123589999999999998887643 2 24789999999998776
Q ss_pred HHhcc
Q 020840 208 HHNLK 212 (320)
Q Consensus 208 ~e~L~ 212 (320)
++++.
T Consensus 162 ~~n~~ 166 (284)
T TIGR03533 162 EINIE 166 (284)
T ss_pred HHHHH
Confidence 66654
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.58 E-value=0.1 Score=47.03 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=35.0
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
...+|+|+|||.|.++.-+.+. ..+++-||+|+.+....++++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 3468999999999988876542 1268999999999888777764
No 32
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.53 E-value=0.19 Score=48.68 Aligned_cols=70 Identities=13% Similarity=0.299 Sum_probs=46.0
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
+-|+.-|+...+--+.+..|+ .. .+ ..+|+|+|||+|.++..+.... | ..+++.||+|+...+.-+
T Consensus 109 ~vlipr~~te~lv~~~l~~~~-----~~-~~-~~~VLDlG~GsG~iai~la~~~---p----~~~V~avDis~~al~~A~ 174 (307)
T PRK11805 109 RVLVPRSPIAELIEDGFAPWL-----ED-PP-VTRILDLCTGSGCIAIACAYAF---P----DAEVDAVDISPDALAVAE 174 (307)
T ss_pred CCcCCCCchHHHHHHHHHHHh-----cc-CC-CCEEEEEechhhHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHH
Confidence 456666666444444333222 11 11 2489999999999998876542 3 247999999999988777
Q ss_pred Hhcc
Q 020840 209 HNLK 212 (320)
Q Consensus 209 e~L~ 212 (320)
+++.
T Consensus 175 ~n~~ 178 (307)
T PRK11805 175 INIE 178 (307)
T ss_pred HHHH
Confidence 6664
No 33
>PRK08317 hypothetical protein; Provisional
Probab=95.40 E-value=0.076 Score=47.08 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=37.4
Q ss_pred HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
.++.....+|+|+|||.|.++..+.+.+. ...+++.||+|+.+.+..+++
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~------~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG------PEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHH
Confidence 34444456999999999999998876541 224799999999987766554
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.39 E-value=0.056 Score=50.08 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
+..+...++....-+|+|+|||+|.++..+.+.. |. .+++-||+|+.+.+.-++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~---p~----~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRW---PG----AVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHh
Confidence 3344444554445699999999999988776532 32 369999999999775544
No 35
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.38 E-value=0.11 Score=44.33 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=35.7
Q ss_pred CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
.....||++|+|.|.|+.-+...+.+. ...++++.||.++.+.+.-
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a 69 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESA 69 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHH
Confidence 345799999999999999888777543 1346899999999885533
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.34 E-value=0.41 Score=45.25 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC---CCCCCCCCCCeecCCChhHHHHHHHHHHHHHHH-HHc
Q 020840 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLW-EQM 156 (320)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w-~~~ 156 (320)
.+...|...|..+++.. |--++++|.+....++...=.. ..--+|...-|--+.. |.. +..++...+ +..
T Consensus 22 ~k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~----~~~-l~~~vlp~l~~~~ 95 (264)
T smart00138 22 YKRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESKH----FEA-LEEKVLPLLIASR 95 (264)
T ss_pred chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHH----HHH-HHHHHhHHHHHhc
Confidence 45678899999999987 6678999999888775211110 0011232222222222 222 233333222 222
Q ss_pred CCCCcceEEEecCCchh----HHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 157 GQPNRVNLVELGPGRGT----LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 157 g~p~~l~IvEiGaG~Gt----La~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
....+++|+++|||+|. ||.-+++..... -....+++-+|+|+.+-+.-++.
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKA--REPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhc--CCCCeEEEEEECCHHHHHHHHcC
Confidence 22345899999999996 444444433211 01245899999999987655553
No 37
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.33 E-value=0.075 Score=54.30 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 138 SQMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 138 sp~FGe~IA~~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
-..|.++|...+.+........ ....|+.+|||||-|..-.+++.+... .+.+++.||.||....
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~~ 228 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAVV 228 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHHH
Confidence 3568888888777665543221 246899999999999998888865422 3468999999996543
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.27 E-value=0.056 Score=47.65 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
+.+..-+|+|+|||+|.++..+.+.. | ..+++.||+|+.+.+.-++++
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~---~----~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQF---P----SLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHH
Confidence 33344589999999999999887642 2 247999999998876555544
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.25 E-value=0.045 Score=49.43 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 135 pEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+--|.+|.+...|..- .+. ..-.|+|+|||+|.++..+.+.. |. .+++-||+|+.+.+..++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~----~~~-~~~~VLDiGcGtG~~~~~la~~~---p~----~~v~gVD~s~~~i~~a~~~~~ 85 (202)
T PRK00121 20 EELWPRLSPAPLDWAEL----FGN-DAPIHLEIGFGKGEFLVEMAKAN---PD----INFIGIEVHEPGVGKALKKIE 85 (202)
T ss_pred cccchhhcCCCCCHHHH----cCC-CCCeEEEEccCCCHHHHHHHHHC---CC----ccEEEEEechHHHHHHHHHHH
Confidence 33346666666665532 122 23589999999999999886542 32 369999999999887777664
No 40
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.19 E-value=0.076 Score=49.16 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=35.9
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
...+|+|+|||+|.++..++..+ | ..+++.+|+|+...+.-++++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 34689999999999988887654 2 2479999999998776666554
No 41
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.17 E-value=0.056 Score=52.19 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=35.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.-.|+|+|||.|.|..-++... .+++.||+++.+.+.-++++..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~---------~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA---------KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC---------CcEEEEECCHHHHHHHHHHHHh
Confidence 3589999999999998877631 2589999999999988777753
No 42
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.01 E-value=0.033 Score=46.47 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
+...+|+|+|||.|.++..+ +..+ .+++.||+|+.+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~-----~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRG-----FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTT-----SEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhC-----CEEEEEECCHHHHhh
Confidence 45569999999999877665 2221 279999999998876
No 43
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.01 E-value=0.084 Score=48.06 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=36.8
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.-+|+|+|||+|.++.-+.+.+.. ..+++-||+++.+.+.-++++..
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~------~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGK------SGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 358999999999999776654321 23689999999999888777753
No 44
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.88 E-value=0.065 Score=55.15 Aligned_cols=82 Identities=22% Similarity=0.318 Sum_probs=54.4
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCc-ccceeEEEEecChhhHH
Q 020840 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF-TESLHIHLVECSPTLQK 205 (320)
Q Consensus 127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~-~~~l~y~iVE~Sp~Lr~ 205 (320)
+.|-|+|++.|.....+++....- ........+|+|.|||+|.|...+++.+...... .-....+.+|+++.+..
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~----~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~ 77 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIG----KNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK 77 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcc----hhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence 358999999997665544332211 1111134699999999999999999987531111 11357899999999877
Q ss_pred HHHHhcc
Q 020840 206 LQHHNLK 212 (320)
Q Consensus 206 ~Q~e~L~ 212 (320)
.-+..|.
T Consensus 78 ~a~~~l~ 84 (524)
T TIGR02987 78 RAKKLLG 84 (524)
T ss_pred HHHHHHh
Confidence 6665553
No 45
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.23 Score=45.70 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=44.6
Q ss_pred CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 130 DFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
.|.|.+++.. +++......|.-+--.|+++|||+|.|+...+ ++.+-+++-||+.|...+.-++
T Consensus 23 QY~Tp~~~Aa--------~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~--------~lGa~~V~~vdiD~~a~ei~r~ 86 (198)
T COG2263 23 QYRTPAPLAA--------YILWVAYLRGDLEGKTVLDLGAGTGILAIGAA--------LLGASRVLAVDIDPEALEIARA 86 (198)
T ss_pred ecCCChHHHH--------HHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHH--------hcCCcEEEEEecCHHHHHHHHH
Confidence 4567766543 33222222343333479999999999998764 2334468899999999988877
Q ss_pred hcc
Q 020840 210 NLK 212 (320)
Q Consensus 210 ~L~ 212 (320)
+..
T Consensus 87 N~~ 89 (198)
T COG2263 87 NAE 89 (198)
T ss_pred HHH
Confidence 664
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=94.82 E-value=0.13 Score=46.43 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=49.2
Q ss_pred CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (320)
Q Consensus 125 ~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (320)
+....++++.....+++-+-+-.-+. ... ..|...+|+|+|||+|.++..+.+.. | ..+++.||+|+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~d~l~-l~~--~l~~g~~VLDiGcGtG~~al~la~~~---~----~~~V~giD~s~~~l 82 (187)
T PRK00107 13 WNKKYNLTAIRDPEELWERHILDSLA-IAP--YLPGGERVLDVGSGAGFPGIPLAIAR---P----ELKVTLVDSLGKKI 82 (187)
T ss_pred hcccccccccCCHHHHHHHHHHHHHH-HHh--hcCCCCeEEEEcCCCCHHHHHHHHHC---C----CCeEEEEeCcHHHH
Confidence 34567777777665544333322111 111 12224689999999999888877632 2 24799999999988
Q ss_pred HHHHHhcc
Q 020840 205 KLQHHNLK 212 (320)
Q Consensus 205 ~~Q~e~L~ 212 (320)
+.-++++.
T Consensus 83 ~~A~~~~~ 90 (187)
T PRK00107 83 AFLREVAA 90 (187)
T ss_pred HHHHHHHH
Confidence 76666554
No 47
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.80 E-value=0.43 Score=45.26 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=35.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||+|.++..+.... | ..+++.||+|+...+..++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---~----~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---P----NAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999998887653 2 2479999999988887777654
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.77 E-value=0.27 Score=49.07 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+..+.+.++....-+|+|+|||.|.++..+.+.. ..+++-||+|+.+.+.-+++..
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--------g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--------GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--------CCEEEEEeCCHHHHHHHHHHhc
Confidence 3334445554444589999999999987765431 2368999999999887766553
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.74 E-value=0.12 Score=46.60 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=35.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||+|.++.-+.+.+.. .-+++-||+++.+.+.-++++..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~------~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER------RGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999776654421 12699999999998877776643
No 50
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=94.71 E-value=0.12 Score=48.53 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=34.8
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.+|+|+|||+|.++..+.+.+... ...+++-||+|+.+.+.-+++.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHhC
Confidence 579999999999999887764321 1136899999999887665543
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=94.70 E-value=0.14 Score=45.78 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=35.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
..+|+|+|||+|.++..++... | ...+++.+|+|+.+.+.-++++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence 3689999999999998887754 2 13479999999988776655553
No 52
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.69 E-value=0.1 Score=46.49 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=34.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-+|+|+|||+|.++..+.+. .| ..+++.||+||.+.+.-++++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~---~~----~~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLL---CP----KGRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999998887543 22 2369999999999887666654
No 53
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.67 E-value=0.05 Score=45.81 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=31.2
Q ss_pred HHHH-HHHHHHHHHHHHcCCC-CcceEEEecCCchhHHHHHHH
Q 020840 140 MFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLR 180 (320)
Q Consensus 140 ~FGe-~IA~~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~ 180 (320)
+|=. +||.|++.+|+.+..+ .+...|++|||+|-|.. ||.
T Consensus 36 VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~-IL~ 77 (112)
T PF07757_consen 36 VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVY-ILN 77 (112)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHH-HHH
Confidence 4433 5999999999988655 56789999999998765 443
No 54
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.67 E-value=0.14 Score=46.37 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=36.6
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
..-+|+|+|||+|.++.-+.+... ...+++-||+++.+.+.-++++..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~------~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVG------RDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 335899999999999986655432 123689999999999887777653
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=94.60 E-value=0.099 Score=41.80 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=37.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.+|+|+|||+|+++..+++.. ..+++-||++|...+.-+.++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999888763 34799999999999988887754
No 56
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.57 E-value=0.47 Score=44.48 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=35.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+.+|+|+|||+|.++..+.+.. +. .+++.||+|+...+..++++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---~~----~~v~~vDis~~al~~A~~N~~ 131 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---DG----IELHAADIDPAAVRCARRNLA 131 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 3589999999999998877643 22 368999999999887777664
No 57
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.55 E-value=0.097 Score=50.74 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=40.5
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~ 214 (320)
......-.|+|+|||+|.|..-+|+.-+ .++-+|+.|.|...-.++.++-
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcCC
Confidence 3433445899999999999999998654 4889999999999888877653
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.53 E-value=0.18 Score=49.63 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=35.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||.|.++..+++. .| ..+++.||+|+.+.+.-++++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~p----~~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---SP----KIRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence 37999999999998877653 23 24799999999888777776653
No 59
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=94.52 E-value=0.25 Score=44.79 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=35.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||+|.++..++... | ..+++.||+|+.+.+.-++.+.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~---~----~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER---P----DARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 589999999999998887643 2 2479999999999887666554
No 60
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.51 E-value=0.12 Score=46.28 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=39.4
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
++....-.|+|+|||+|.++..+++.+. ...+++.||+|+.+.+.-++++..
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~------~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVG------ETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4544456899999999999998877642 124799999999998876666543
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=94.46 E-value=0.12 Score=46.04 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||+|.++..+... .| ..+++.||.|+.+.+.-++.+.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~---~~----~~~V~~iD~s~~~~~~a~~~~~ 87 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA---RP----ELKLTLLESNHKKVAFLREVKA 87 (181)
T ss_pred CeEEEecCCCCccHHHHHHH---CC----CCeEEEEeCcHHHHHHHHHHHH
Confidence 58999999999988876532 22 2469999999988765555443
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.45 E-value=0.17 Score=50.67 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=35.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||+|.++.-+.+. .|. .+++.||+|+...+..++++..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999988766543 343 4799999999988887777653
No 63
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.45 E-value=0.18 Score=48.52 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=40.1
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
+.+...+++++++|+|-.|..||++....+.. ...+++++|+||.+-+.-++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkq 148 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQ 148 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHH
Confidence 44455799999999999999999998753332 23579999999999765444
No 64
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.44 E-value=0.18 Score=45.40 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=33.6
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+|+|+|||+|.++. +|..+. -+++.||+++.+.+.-++++..
T Consensus 78 ~~~~VLeiG~GsG~~t~-~la~~~--------~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAA-VLAHLV--------RRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred CCCEEEEECCCccHHHH-HHHHHh--------CEEEEEeCCHHHHHHHHHHHHH
Confidence 34689999999999887 443321 1589999999998877776653
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.40 E-value=0.093 Score=46.91 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=33.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
-.|+|+|||+|.++..+.+. +|+ ..++-||+|+.+.+.-++++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~ 60 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKA 60 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHH
Confidence 38999999999998887753 343 36999999998876555544
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=94.31 E-value=0.26 Score=44.90 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..+.+. + ..+++.||+|+.+.+..++++.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999987765541 1 1268999999998876666553
No 67
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.29 E-value=0.079 Score=50.36 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
..|-|+|+.+|..+..+++ .....-+|++-.||+|.|...+.++++....-....+++-+|+++.....
T Consensus 24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l 92 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL 92 (311)
T ss_dssp SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence 4689999999987766654 21223479999999999999999987532111234578999999998876
Q ss_pred HHHhc
Q 020840 207 QHHNL 211 (320)
Q Consensus 207 Q~e~L 211 (320)
-+-.|
T Consensus 93 a~~nl 97 (311)
T PF02384_consen 93 AKLNL 97 (311)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65444
No 68
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=94.20 E-value=0.17 Score=46.45 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=32.0
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.-+|+|+|||+|.++..+.. . ..+++.||+|+.+.+..+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~-----~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE----R-----GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH----c-----CCeEEEEECCHHHHHHHHhhC
Confidence 35899999999998765532 1 136999999999988776654
No 69
>PRK00811 spermidine synthase; Provisional
Probab=94.20 E-value=0.2 Score=47.87 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=50.1
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
.|..-++-.---.|=|+++.--+. -.|.+-+|+++|+|.|.++..+|+. +. ..++++||+++.+.+.-
T Consensus 49 Dg~~q~~~~de~~Y~e~l~h~~~~-----~~~~p~~VL~iG~G~G~~~~~~l~~----~~---~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 49 DGCVMTTERDEFIYHEMMTHVPLF-----AHPNPKRVLIIGGGDGGTLREVLKH----PS---VEKITLVEIDERVVEVC 116 (283)
T ss_pred CCeeeecCcchhhHHHHhhhHHHh-----hCCCCCEEEEEecCchHHHHHHHcC----CC---CCEEEEEeCCHHHHHHH
Confidence 466665543334566666544321 1234458999999999999988753 21 23699999999999888
Q ss_pred HHhcc
Q 020840 208 HHNLK 212 (320)
Q Consensus 208 ~e~L~ 212 (320)
++.+.
T Consensus 117 ~~~~~ 121 (283)
T PRK00811 117 RKYLP 121 (283)
T ss_pred HHHhH
Confidence 87764
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.16 E-value=0.2 Score=43.83 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=32.6
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..+.+. . . +++.||+||.+.+.-++++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~---~----~--~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK---G----K--CILTTDINPFAVKELRENAK 62 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc---C----C--EEEEEECCHHHHHHHHHHHH
Confidence 47999999999998877652 1 1 68999999999876665553
No 71
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.11 E-value=0.22 Score=43.95 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
..+...+|+|+|||.|.++..+++.. |. ..+|+.+|+++.+.+.=++++
T Consensus 36 ~~~~~~~vldiG~G~G~~~~~~~~~~---~~---~~~~~~iD~~~~~~~~~~~~~ 84 (223)
T TIGR01934 36 GVFKGQKVLDVACGTGDLAIELAKSA---PD---RGKVTGVDFSSEMLEVAKKKS 84 (223)
T ss_pred ccCCCCeEEEeCCCCChhHHHHHHhc---CC---CceEEEEECCHHHHHHHHHHh
Confidence 33345699999999999988887654 21 247999999998876555544
No 72
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.09 E-value=0.2 Score=48.75 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=52.3
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
.|=||-=||. |-+..++++...+...-.+..|+|+|+|+|..+..+|..|. +.+++-||.|+.-.+.-
T Consensus 121 pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 121 PGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLA 188 (328)
T ss_pred CCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHH
Confidence 5677777775 44556677766665555556899999999999999987653 35789999999876644
Q ss_pred HH
Q 020840 208 HH 209 (320)
Q Consensus 208 ~e 209 (320)
++
T Consensus 189 ~e 190 (328)
T KOG2904|consen 189 KE 190 (328)
T ss_pred HH
Confidence 44
No 73
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.06 E-value=0.11 Score=39.05 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.3
Q ss_pred EEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+|+|||.|..+.-+.+. ...+|+-+|+|+.+.+.-++++.
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc
Confidence 69999999999887764 23479999999998777666664
No 74
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.83 E-value=0.24 Score=46.78 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=46.5
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
|..-++..--..|-|+++.--+ +..+.+-+|+|+|+|.|.++..+++.. ...++++||+++.+.+.-+
T Consensus 46 g~~q~~~~~e~~y~e~l~~~~l-----~~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~ 113 (270)
T TIGR00417 46 GVVQTTERDEFIYHEMIAHVPL-----FTHPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSK 113 (270)
T ss_pred CcccccCchHHHHHHHhhhhHh-----hcCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHH
Confidence 4444442223456666654221 123334599999999999988887642 1236999999999987766
Q ss_pred Hhcc
Q 020840 209 HNLK 212 (320)
Q Consensus 209 e~L~ 212 (320)
+.+.
T Consensus 114 ~~~~ 117 (270)
T TIGR00417 114 KFLP 117 (270)
T ss_pred HHhH
Confidence 6653
No 75
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.82 E-value=0.29 Score=50.66 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=35.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+.+|+|+|||+|.++..++..+ |. .+++.||+|+...+.-++++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---p~----~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---PN----ANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---CC----CeEEEEECCHHHHHHHHHHHH
Confidence 3589999999999999877643 32 479999999988887777654
No 76
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.43 Score=45.73 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=33.7
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+|+|+|+|+|.+|..+.... |+ .+++-+|+||.-.+.-+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENAE 155 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHHH
Confidence 79999999999999887654 32 479999999987666555543
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=93.50 E-value=0.27 Score=43.94 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 142 GEMVGVWAMCLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
......|+.+.+...+ .....+|+|+|||+|.++..+.+. . .+|+.+|.|+.+.+.-++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence 3334566666555432 123569999999999988766542 1 249999999988665555443
No 78
>PRK05785 hypothetical protein; Provisional
Probab=93.46 E-value=0.25 Score=45.56 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=32.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
+-+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+.-+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHhc
Confidence 3589999999999887765432 13699999999998876553
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.43 E-value=0.24 Score=44.48 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=32.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||.|.++.-+.+. ..+++.||+|+.+.+.-++++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~ 73 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA 73 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 58999999999988776542 1368999999998776655443
No 80
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.36 E-value=0.16 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=29.4
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
+|+|+|||.|.++..++. . ...+|+.+|.++......+
T Consensus 1 ~ildig~G~G~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALAS----G----PGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhc----C----CCCEEEEEeCCHHHHHHHH
Confidence 489999999998877765 1 2347999999998766554
No 81
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.31 E-value=0.25 Score=46.47 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=36.7
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
++.+...+|+|+|||.|.++..+... . ..+++.||+|+.+.+..+++..
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHHHHcC
Confidence 44445569999999999988766532 1 2479999999999887776553
No 82
>PRK04457 spermidine synthase; Provisional
Probab=93.22 E-value=0.19 Score=47.53 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=37.6
Q ss_pred CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+.+-+|+|+|+|.|+++..+++.. | ..+++.||++|.+.+.-++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---p----~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---P----DTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHcC
Confidence 334589999999999999887653 3 3479999999999998777664
No 83
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.93 E-value=0.37 Score=45.45 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=40.9
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
++......|+|+|||+|.+|..+.+... ..+++.+|+|+.|-+.-++++..
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-------~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG-------TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC-------CceEEEEECCHHHHHHHHHHhhc
Confidence 3443457999999999999988776542 45799999999999988888764
No 84
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.86 E-value=0.47 Score=44.60 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=33.8
Q ss_pred CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
+...+|+|+|||+|.++..+.+... | ..+++-||+|+.+.+.-+++.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~--~----~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVG--S----DGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHh
Confidence 3446899999999998876554321 1 236899999999987665543
No 85
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.68 E-value=0.57 Score=45.98 Aligned_cols=49 Identities=24% Similarity=0.225 Sum_probs=37.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
...|||+|||+|+=.+-+|+++.... ...+|+-||+|...-+.-.++|.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhh
Confidence 35899999999999999999986321 13579999999766555555565
No 86
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.64 E-value=0.35 Score=43.30 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=31.8
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
+.+|+|+|||+|.++..+.+. ..+++-||+|+.+.+.-+++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~ 72 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK 72 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence 358999999999999877541 136899999998877544433
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.58 E-value=0.29 Score=46.58 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
|-+||.|+. .+..-+|+|+|+|+|.+..-+-.. +...++..||+.+.+.+.-+++++
T Consensus 33 aiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r-------~~~a~I~~VEiq~~~a~~A~~nv~ 89 (248)
T COG4123 33 AILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQR-------TEKAKIVGVEIQEEAAEMAQRNVA 89 (248)
T ss_pred HHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhcc-------CCCCcEEEEEeCHHHHHHHHHHHH
Confidence 556777763 233569999999999987654321 122579999999999987777664
No 88
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=92.46 E-value=0.55 Score=45.87 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.8
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
..+|+|+|||+|.++..+.+. ..+++-||+|+.+.+.-+++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 469999999999998877652 1368999999999776666553
No 89
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=92.32 E-value=0.89 Score=43.34 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=32.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..+++ .+ .-+++.||+||.+.+.-++++.
T Consensus 161 ~~VLDvGcGsG~lai~aa~----~g----~~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALK----LG----AAKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CEEEEeCCChhHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence 5899999999999866543 11 1268999999998776666554
No 90
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=92.22 E-value=0.93 Score=44.01 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhh
Q 020840 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI 228 (320)
Q Consensus 149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~ 228 (320)
|++.+++...+. -+|+++|||+|-|+-.-+.- -+-+++-||+.|.-.+.-+++.....
T Consensus 151 cl~~l~~~~~~g-~~vLDvG~GSGILaiaA~kl--------GA~~v~a~DiDp~Av~~a~~N~~~N~------------- 208 (295)
T PF06325_consen 151 CLELLEKYVKPG-KRVLDVGCGSGILAIAAAKL--------GAKKVVAIDIDPLAVEAARENAELNG------------- 208 (295)
T ss_dssp HHHHHHHHSSTT-SEEEEES-TTSHHHHHHHHT--------TBSEEEEEESSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHhccCC-CEEEEeCCcHHHHHHHHHHc--------CCCeEEEecCCHHHHHHHHHHHHHcC-------------
Confidence 344444444444 39999999999998765431 22368999999998776666554311
Q ss_pred cccCCCCeEeecccccCCCCCCEEEEEecccccc
Q 020840 229 SSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262 (320)
Q Consensus 229 ~~~~~~~i~W~~sleelp~~~~~~iiANE~fDAL 262 (320)
....+.+.. ..+.+.+..-+|+||=+.|-|
T Consensus 209 ---~~~~~~v~~-~~~~~~~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 209 ---VEDRIEVSL-SEDLVEGKFDLVVANILADVL 238 (295)
T ss_dssp ----TTCEEESC-TSCTCCS-EEEEEEES-HHHH
T ss_pred ---CCeeEEEEE-ecccccccCCEEEECCCHHHH
Confidence 112444432 233443434689999655443
No 91
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.12 E-value=0.34 Score=46.17 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=32.3
Q ss_pred HHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840 154 EQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (320)
Q Consensus 154 ~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (320)
++.|.. ....+||+|||+|.|+.-|-..+...+ .....|++||...
T Consensus 11 ~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~--~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 11 EQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDK--PSNSRFVLIDRAS 57 (259)
T ss_pred HHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcc--cCCccEEEEecCc
Confidence 344442 456899999999999999988775321 1234699999843
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=0.93 Score=44.30 Aligned_cols=75 Identities=25% Similarity=0.274 Sum_probs=51.5
Q ss_pred CCCCCeecCCCh----hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840 126 GAEGDFITSPEV----SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (320)
Q Consensus 126 G~~GDFiTSpEI----sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (320)
|...-|+|.|-+ .--+|--| +.+.+..+..-+|+++|||.|-|..-+.+. .| ..+++|||+|.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p----~~~vtmvDvn~ 192 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SP----QAKLTLVDVNA 192 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CC----CCeEEEEecCH
Confidence 667789999877 12344322 222333333348999999999999877653 34 34799999998
Q ss_pred hhHHHHHHhccc
Q 020840 202 TLQKLQHHNLKC 213 (320)
Q Consensus 202 ~Lr~~Q~e~L~~ 213 (320)
.--+.-++++..
T Consensus 193 ~Av~~ar~Nl~~ 204 (300)
T COG2813 193 RAVESARKNLAA 204 (300)
T ss_pred HHHHHHHHhHHH
Confidence 887777777764
No 93
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.98 E-value=0.51 Score=46.23 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
..+|+|+|||.|.++..+.+. ..+++-||+|+.+.+.-+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~---------g~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM---------GATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHH
Confidence 358999999999987755431 136999999999887665543
No 94
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.94 E-value=0.47 Score=46.51 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=34.2
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-.|+|+|||+|.++.-+.+.... .-.++.||+++.+.+.-++++.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~------~g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGE------KGLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCC------CCEEEEEECCHHHHHHHHHHHH
Confidence 358999999999999887664321 1247889999999876666553
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=91.88 E-value=0.64 Score=40.06 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||+|.++..+++. ..+++.+|+|+...+.-++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence 47999999999988887663 2368999999988765555553
No 96
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.54 Score=43.70 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840 123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (320)
Q Consensus 123 ~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (320)
-++| .|-++.+|.+- |+.+. .+...+.-.|+|||+|+|..++ ||..+.. +++-||..+.
T Consensus 47 lpi~-~gqtis~P~~v-------A~m~~----~L~~~~g~~VLEIGtGsGY~aA-vla~l~~--------~V~siEr~~~ 105 (209)
T COG2518 47 LPIG-CGQTISAPHMV-------ARMLQ----LLELKPGDRVLEIGTGSGYQAA-VLARLVG--------RVVSIERIEE 105 (209)
T ss_pred ccCC-CCceecCcHHH-------HHHHH----HhCCCCCCeEEEECCCchHHHH-HHHHHhC--------eEEEEEEcHH
Confidence 3566 68888888653 33221 2232233589999999999887 4444422 6899999999
Q ss_pred hHHHHHHhccc
Q 020840 203 LQKLQHHNLKC 213 (320)
Q Consensus 203 Lr~~Q~e~L~~ 213 (320)
|.+.-+++|..
T Consensus 106 L~~~A~~~L~~ 116 (209)
T COG2518 106 LAEQARRNLET 116 (209)
T ss_pred HHHHHHHHHHH
Confidence 99988888864
No 97
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.75 E-value=1.2 Score=45.09 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=32.8
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
...+|+|+|||+|.++..+.... ..+++-||+|+.+.+..+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence 34589999999999877655422 237999999998877665544
No 98
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.67 E-value=0.61 Score=42.93 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=34.8
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+++|+|+|+|.+++=+-.-... .-+++-||+.+.|.+.-+++|..
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~------~g~Vv~vE~~~~l~~~A~~~l~~ 119 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGP------VGRVVSVERDPELAERARRNLAR 119 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHST------TEEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCc------cceEEEECccHHHHHHHHHHHHH
Confidence 3469999999999999854433322 12588999999999988888864
No 99
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.34 E-value=0.37 Score=40.01 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+++|+|||.|..+..+++. .| ..+++.||++|.+.+.-++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~---~~----~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK---GA----EGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHh---CC----CCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999997766543 22 2379999999999887666554
No 100
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=91.22 E-value=0.41 Score=45.24 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=62.0
Q ss_pred HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCC
Q 020840 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT 234 (320)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~ 234 (320)
+...-.+-+|+++|||.|....-+.+. +|+ -.+.-|+.||.|.+.-+++|-... . ..++
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~R---wP~----A~i~GiDsS~~Mla~Aa~rlp~~~-----------f---~~aD 83 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARR---WPD----AVITGIDSSPAMLAKAAQRLPDAT-----------F---EEAD 83 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHh---CCC----CeEeeccCCHHHHHHHHHhCCCCc-----------e---eccc
Confidence 333334569999999999988877654 343 268899999999988887774310 0 0012
Q ss_pred CeEeecccccCCCCCCEEEEEecccccccceeE-------EEeCCeeEEEEE
Q 020840 235 PVSWHAALEQVPSGFPTIIVAHEFYDALPVHQF-------QKTTRGWCEKLV 279 (320)
Q Consensus 235 ~i~W~~sleelp~~~~~~iiANE~fDALPv~~f-------~~~~~~w~E~~V 279 (320)
--.|. |....-+|+||-+|-=||=|.= ....|+|--+.+
T Consensus 84 l~~w~------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 84 LRTWK------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred HhhcC------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 22453 2222358999999988887732 234566654444
No 101
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=91.21 E-value=0.43 Score=42.83 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=32.4
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
+|+|+|||.|.++..+.+.. |. .+++-||+|+.+.+.-++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---~~----~~v~gid~s~~~~~~a~~~~ 43 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---PH----LQLHGYTISPEQAEVGRERI 43 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHH
Confidence 69999999999988775532 22 46889999999877666655
No 102
>PRK04266 fibrillarin; Provisional
Probab=91.14 E-value=0.85 Score=42.36 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=34.4
Q ss_pred HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
.++....-+|+|+|||+|.++..+.+... .-+++-||+|+.+.+...+.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence 34443445999999999999887765432 12689999999876644433
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.07 E-value=1.1 Score=43.84 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.|++..++...+ .-+++++|||+|-||-..+.- .+.+.+-+|+.|.--+.-+++..
T Consensus 151 lcL~~Le~~~~~-g~~vlDvGcGSGILaIAa~kL--------GA~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 151 LCLEALEKLLKK-GKTVLDVGCGSGILAIAAAKL--------GAKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHHHhhcC-CCEEEEecCChhHHHHHHHHc--------CCceEEEecCCHHHHHHHHHHHH
Confidence 445555555554 359999999999998776542 23468889999877666666554
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.05 E-value=0.64 Score=43.24 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=31.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..+.+ .. ..+++-||+||...+.-++++.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~----~g----~~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAK----LG----AKKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CEEEEeCCcHHHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence 5899999999998865432 11 1248999999998876666554
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.99 E-value=0.31 Score=43.03 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=29.1
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
..-+|+|+|||+|.++..+.+... ...+++.||+||.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~------~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG------GKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC------CCceEEEEeccccc
Confidence 345899999999999888876542 12368999999864
No 106
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.73 E-value=1.1 Score=40.60 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=32.3
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
....|+|+|||.|.++..+.+. ..+++.||+|+.+.+.-++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~---------~~~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL---------GADVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc---------CCeEEEEcCCHHHHHHHHHHH
Confidence 3468999999999998766542 135999999999876555544
No 107
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.61 E-value=0.38 Score=44.83 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=33.3
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+|+++|||+|.++..+.+.+. ...+++.||+|+.|.+.-++++..
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~------~~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVG------PNGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHCC------CccEEEEecCCHHHHHHHHHHHHh
Confidence 345999999999998887765432 223799999999999888777753
No 108
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.47 E-value=0.79 Score=40.48 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHH---HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 142 GEMVGVWAMCLWE---QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 142 Ge~IA~~i~~~w~---~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+..+|.|+...-. ....-...+|+|+|||.|....-+... ....++++-|..+.+...+ ..+.
T Consensus 24 a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~-------~~~~~Vv~TD~~~~l~~l~-~Ni~ 89 (173)
T PF10294_consen 24 ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL-------FGAARVVLTDYNEVLELLR-RNIE 89 (173)
T ss_dssp HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHH-HHHH
T ss_pred HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc-------cCCceEEEeccchhhHHHH-HHHH
Confidence 4456666665321 111123469999999999665544332 1234799999999554444 3443
No 109
>PLN02366 spermidine synthase
Probab=90.30 E-value=1.5 Score=42.79 Aligned_cols=72 Identities=17% Similarity=0.341 Sum_probs=48.4
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
|..-++..---.|-|+|+.--+. ..|.+-+|+++|+|.|.+++.++++ |.. .++.+||+++.+.+.-+
T Consensus 65 g~~q~~~~de~~Y~e~l~h~~l~-----~~~~pkrVLiIGgG~G~~~rellk~----~~v---~~V~~VEiD~~Vi~~ar 132 (308)
T PLN02366 65 GVIQLTERDECAYQEMITHLPLC-----SIPNPKKVLVVGGGDGGVLREIARH----SSV---EQIDICEIDKMVIDVSK 132 (308)
T ss_pred CEeeecCccHHHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCC---CeEEEEECCHHHHHHHH
Confidence 44433322234677777664332 2344568999999999998888654 322 36999999999888777
Q ss_pred Hhcc
Q 020840 209 HNLK 212 (320)
Q Consensus 209 e~L~ 212 (320)
+.+.
T Consensus 133 ~~f~ 136 (308)
T PLN02366 133 KFFP 136 (308)
T ss_pred Hhhh
Confidence 7664
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=90.07 E-value=1.8 Score=44.29 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=34.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..+... .| ..+++.||+|+.+.+.-++++.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~---~p----~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALE---RP----DAFVRASDISPPALETARKNAA 296 (423)
T ss_pred CEEEEEeChhhHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence 38999999999998776543 22 2468999999999887777664
No 111
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=89.95 E-value=1.5 Score=40.29 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=38.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|||.|.|.=+..+.+.+. +..+++.||.+|...+..++.+..
T Consensus 47 k~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence 3899999999999988887653 234799999999999988887754
No 112
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.90 E-value=0.8 Score=43.47 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++.-+... ..+++-||+|+...+.-+++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~ 163 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE 163 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988776541 1369999999998776555443
No 113
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=89.90 E-value=1.1 Score=43.16 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=33.1
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||+|+++.-+.+. ..+++-||+|+...+.-++++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~ 216 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA 216 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999998776541 1268999999999887666554
No 114
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=89.83 E-value=1.6 Score=40.39 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=36.2
Q ss_pred HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.+..+.--+++|+|||.|.|...+.... -++..+|+|+.-.++-++++..
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---------d~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---------DRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---------EEEEEEES-HHHHHHHHHHTTT
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---------CceEEEeCCHHHHHHHHHhcCC
Confidence 3566555689999999999998864321 2589999999999888888875
No 115
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=89.36 E-value=1.1 Score=44.33 Aligned_cols=43 Identities=14% Similarity=0.347 Sum_probs=32.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
..+|+|+|||+|.++..+++.. +. .+++.||.|+.+.+.-+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHh
Confidence 3689999999999888776542 22 3699999999986655544
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=89.14 E-value=0.58 Score=42.72 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=34.0
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.+++|+|||+|.++...|... ..+++.||+++...+.-+++++.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~--------a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRY--------AAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcC--------CCEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999997654321 13799999999998877776643
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=89.01 E-value=1.9 Score=43.32 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
-+|=|+|+.=.+. ..+.+-+|+++|+|.|..++.+|++ +. ..++++||++|.+.+.-++
T Consensus 134 ~iYHE~Lvhp~m~-----~h~~PkrVLIIGgGdG~tlrelLk~----~~---v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 134 QIYHEALVHPIMS-----KVIDPKRVLILGGGDGLALREVLKY----ET---VLHVDLVDLDGSMINMARN 192 (374)
T ss_pred HHHHHHHHHHHHH-----hCCCCCEEEEECCCHHHHHHHHHhc----CC---CCeEEEEeCCHHHHHHHHh
Confidence 4688888774431 2334459999999999988777763 21 2369999999998877664
No 118
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.93 E-value=1.1 Score=41.10 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=26.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
-+|+++|||.|+|+..+.+. ..++-+=||+++....
T Consensus 15 srVLDLGCGdG~LL~~L~~~--------k~v~g~GvEid~~~v~ 50 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE--------KQVDGYGVEIDPDNVA 50 (193)
T ss_pred CEEEecCCCchHHHHHHHHh--------cCCeEEEEecCHHHHH
Confidence 49999999999987655442 1246788999987543
No 119
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=88.82 E-value=3.1 Score=38.00 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=38.6
Q ss_pred CCChhHHHHHHHHHHHHHH-----HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 134 SPEVSQMFGEMVGVWAMCL-----WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 134 SpEIsp~FGe~IA~~i~~~-----w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.|+....|..+.+..-... ......+..-+||++|+|.|.++..+++. +|+ +++++.|.-..+
T Consensus 69 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~v~ 136 (241)
T PF00891_consen 69 DPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPN----LRATVFDLPEVI 136 (241)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STT----SEEEEEE-HHHH
T ss_pred ChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCC----CcceeeccHhhh
Confidence 3566667766665543211 12233344458999999999999988754 454 478888884444
No 120
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=88.75 E-value=0.75 Score=40.80 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=27.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
-+|+|+|||+|.++..+.+.. ...++-||+|+.+.+.-
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--------~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--------QVRGYGIEIDQDGVLAC 52 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--------CCcEEEEeCCHHHHHHH
Confidence 489999999999876554321 12467899999876544
No 121
>PRK06922 hypothetical protein; Provisional
Probab=88.74 E-value=0.99 Score=48.53 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=32.9
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.+|+|+|||+|.++..+.+. .| ..+++-||+|+.+.+..++++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~---~P----~~kVtGIDIS~~MLe~Ararl 462 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE---TE----DKRIYGIDISENVIDTLKKKK 462 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHh
Confidence 58999999999987665443 33 357999999999877666554
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=88.65 E-value=0.69 Score=42.16 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.3
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (320)
.-.|+|+|||+|.++.-+++... ....++-||+++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~------~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIG------DKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcC------CCceEEEEeccc
Confidence 34899999999999888876542 123689999998
No 123
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.59 E-value=0.97 Score=47.50 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
..|+++|-..+++.--.........|.=+|||||-|...+|++.+... .+++.++||.+|.-
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNA 407 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNA 407 (649)
T ss_pred HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcch
Confidence 467888877776653222222256888999999999999999987532 47899999999975
No 124
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=88.55 E-value=1.7 Score=42.48 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=28.1
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
.-+|+|+|||+|.++..++.. .+ -.++-||+|+.+..
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~---g~-----~~v~GiDpS~~ml~ 158 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH---GA-----KSLVGIDPTVLFLC 158 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence 358999999999998776542 11 25889999997754
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=88.46 E-value=1.6 Score=40.53 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=36.1
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|+|+|.-+.-+.+.+.. ..+++.||+++...+.-++.+..
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~------~g~v~tiD~d~~~~~~A~~n~~~ 115 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPE------DGRITAIDIDKEAYEVGLEFIKK 115 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 38999999999977777665421 24799999999998888877754
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=88.42 E-value=1.4 Score=42.07 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=42.5
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+|...--+|+|.|.|+|.|+..+++++.... +++.+|+-+...+.-+++|..
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G------~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEG------HVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCc------eEEEEEecHHHHHHHHHHHHH
Confidence 4554456999999999999999999875432 578899999999988888875
No 127
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=88.34 E-value=1.2 Score=45.03 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=30.1
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
-.++|||||+|.++..+.+. .|+ ..++-||+++.+.+.-.+
T Consensus 124 p~vLEIGcGsG~~ll~lA~~---~P~----~~~iGIEI~~~~i~~a~~ 164 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKN---NPN----KLFIGIEIHTPSIEQVLK 164 (390)
T ss_pred CeEEEEcCcccHHHHHHHHh---CCC----CCEEEEECCHHHHHHHHH
Confidence 38999999999987666443 354 369999999887554433
No 128
>PLN02823 spermine synthase
Probab=87.89 E-value=2.7 Score=41.50 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=49.0
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
|+.-++..---.|=|+++.-.+. -.|.+-+|+.+|+|.|.+++.+|++- ...++++||+.|.+.+.-+
T Consensus 77 g~~qs~~~de~~YhE~l~h~~l~-----~~~~pk~VLiiGgG~G~~~re~l~~~-------~~~~v~~VEiD~~vv~lar 144 (336)
T PLN02823 77 GKMQSAEADEFVYHESLVHPALL-----HHPNPKTVFIMGGGEGSTAREVLRHK-------TVEKVVMCDIDQEVVDFCR 144 (336)
T ss_pred CccccccchHHHHHHHHHhHHHh-----hCCCCCEEEEECCCchHHHHHHHhCC-------CCCeEEEEECCHHHHHHHH
Confidence 44444322223577777654432 23344589999999999998888631 1236999999999999888
Q ss_pred Hhcc
Q 020840 209 HNLK 212 (320)
Q Consensus 209 e~L~ 212 (320)
+.+.
T Consensus 145 ~~~~ 148 (336)
T PLN02823 145 KHLT 148 (336)
T ss_pred Hhcc
Confidence 8774
No 129
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=87.57 E-value=1.6 Score=42.16 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=52.7
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
.-|+-.-.-.+-|+++.-.+..+ +.| -+|+-||.|.|.+++-+|++.. --+.++||+.|...+..++.
T Consensus 52 ~q~~e~de~~yhEml~h~~~~ah---~~p--k~VLiiGgGdG~tlRevlkh~~-------ve~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 52 VQLTERDEFIYHEMLAHVPLLAH---PNP--KRVLIIGGGDGGTLREVLKHLP-------VERITMVEIDPAVIELARKY 119 (282)
T ss_pred hhhccchhHHHHHHHHhchhhhC---CCC--CeEEEECCCccHHHHHHHhcCC-------cceEEEEEcCHHHHHHHHHh
Confidence 33444455677777765443221 333 4999999999999999988642 12699999999999999999
Q ss_pred ccccc
Q 020840 211 LKCMD 215 (320)
Q Consensus 211 L~~~~ 215 (320)
|....
T Consensus 120 l~~~~ 124 (282)
T COG0421 120 LPEPS 124 (282)
T ss_pred ccCcc
Confidence 86543
No 130
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=87.55 E-value=5.6 Score=39.08 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=36.9
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
.+++|++|-||.|+ +||+.+.+.|.. ..++.++|.||...+.=++.++.
T Consensus 135 ~pvrIlDIAaG~GR---YvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGR---YVLDALEKHPER--PDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CceEEEEeccCCcH---HHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence 56999999999999 566666666543 34789999999997766555543
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=87.51 E-value=1.5 Score=44.36 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+.+..++.+.. .......|+|+|||+|+++.-+.+.. .+++-||+|+.+.+.-++++.
T Consensus 282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence 444555554432 21223589999999999988765431 268999999999876666553
No 132
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=87.48 E-value=1.2 Score=41.59 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=33.5
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-+|+|+|||.|.++..+.+... ...+++.||+|+.+.+.-+++..
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g------~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVG------PTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC------CCCEEEEECCCHHHHHHHHHHHH
Confidence 35999999999998775544321 22368999999999887666543
No 133
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.07 E-value=1.4 Score=44.50 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
-.|+|+|||.|.++..+.+.. -+++-||+|+.+.+.-+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~ 76 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE 76 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence 489999999999999876531 15899999999876433
No 134
>PRK03612 spermidine synthase; Provisional
Probab=87.00 E-value=2.2 Score=44.30 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
..|.|+++.-.+ ...|.+-+|+++|+|.|.++..++++ |.. .+++.||++|.+.+.-++
T Consensus 281 ~~y~e~l~~~~l-----~~~~~~~rVL~IG~G~G~~~~~ll~~----~~v---~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 281 YRYHEALVHPAM-----AASARPRRVLVLGGGDGLALREVLKY----PDV---EQVTLVDLDPAMTELART 339 (521)
T ss_pred HHHHHHHHHHHH-----hhCCCCCeEEEEcCCccHHHHHHHhC----CCc---CeEEEEECCHHHHHHHHh
Confidence 356776653211 11234458999999999999888753 221 379999999999998887
No 135
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=86.64 E-value=2.1 Score=39.43 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
+..|||+.-..+..+.+..+..+.-.+++||+|.|......--... + -+.+=||+.+.+.+..++
T Consensus 20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~----~---~~~~GIEi~~~~~~~a~~ 84 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTG----C---KKSVGIEILPELHDLAEE 84 (205)
T ss_dssp CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---------SEEEEEE-SHHHHHHHHH
T ss_pred CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC----C---cEEEEEEechHHHHHHHH
Confidence 3468888888888888877766567999999999997655432211 1 136789999998765544
No 136
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=86.54 E-value=1.7 Score=42.89 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=32.7
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.++|+|||+|+++.-+-+.. -+++.||+|+.+.+..++++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---------~~v~~vE~~~~av~~a~~n~~ 240 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---------RRVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHH
Confidence 69999999999998544331 169999999999887777664
No 137
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=86.39 E-value=1.7 Score=43.08 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=32.8
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||+|+++.-+... ..+++.||+|+...+.-++++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence 38999999999998766531 1268999999999887776654
No 138
>PRK04148 hypothetical protein; Provisional
Probab=86.14 E-value=2.4 Score=36.73 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCCcceEEEecCCchh-HHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 144 ~IA~~i~~~w~~~g~p~~l~IvEiGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
.||.|+.+..... +..+|+|+|+|.|. +|. .|... ..+++.||++|...+.-++.
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~-~L~~~--------G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAK-KLKES--------GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHH-HHHHC--------CCEEEEEECCHHHHHHHHHh
Confidence 4666665544221 23589999999996 544 44321 13699999999976644443
No 139
>PTZ00146 fibrillarin; Provisional
Probab=85.83 E-value=1.8 Score=42.10 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=29.8
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (320)
.-+|+|+|||+|+++..+.+.+... -.++-||+|+.+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~------G~VyAVD~s~r~~ 170 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPE------GVVYAVEFSHRSG 170 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCC------CEEEEEECcHHHH
Confidence 3589999999999999988865321 2588899998754
No 140
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=85.68 E-value=2 Score=38.97 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=28.0
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
.+||||||.|.++..+.. .+|+ ..|.-||++......-.+
T Consensus 20 l~lEIG~G~G~~l~~~A~---~~Pd----~n~iGiE~~~~~v~~a~~ 59 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK---RNPD----INFIGIEIRKKRVAKALR 59 (195)
T ss_dssp EEEEET-TTSHHHHHHHH---HSTT----SEEEEEES-HHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHH---HCCC----CCEEEEecchHHHHHHHH
Confidence 899999999998776543 4565 369999999876554433
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=85.58 E-value=2.2 Score=40.58 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=31.0
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
..-+|+|+|||+|+++..+++. +|+ ++++.+|. |...+.-++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~---~p~----~~~~~~D~-~~~~~~a~~~~ 192 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PGAIDLVNENA 192 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH---CCC----CEEEEEec-HHHHHHHHHHH
Confidence 3459999999999999888775 343 46888997 44444434444
No 142
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=84.99 E-value=5 Score=38.98 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+|+=..-+-...++++..+--+|+|||||-|.||.-..+. | ..+++-|..|+...+.-++++.+
T Consensus 54 ~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~-------y-~v~V~GvTlS~~Q~~~~~~r~~~ 117 (283)
T COG2230 54 EEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE-------Y-GVTVVGVTLSEEQLAYAEKRIAA 117 (283)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH-------c-CCEEEEeeCCHHHHHHHHHHHHH
Confidence 4443334444566666655579999999999998765443 1 24688999999888777776654
No 143
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=84.85 E-value=3.3 Score=39.29 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=37.3
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
++...--+|+|.|.|+|.|...+++++... -+++-.|..+...+.-++.+..
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence 444333599999999999999999998532 3578899999888877777754
No 144
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=84.50 E-value=2.6 Score=41.71 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+.+..++...... .+ -.++|++||+|+++..+.+.. -+++.||+|+...+..++++.
T Consensus 192 ~e~l~~~v~~~~~~--~~--~~vLDl~~G~G~~sl~la~~~---------~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 192 NEKMLEWALDATKG--SK--GDLLELYCGNGNFTLALARNF---------RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred HHHHHHHHHHHhhc--CC--CeEEEEeccccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence 44555555443321 11 369999999999998555432 158999999999887777654
No 145
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=84.42 E-value=3 Score=41.82 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||.|+++.-+.+.. -+++-||+|+.+.+.-++++.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~ 335 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE 335 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence 489999999999998765431 258999999999887766654
No 146
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=84.14 E-value=1.4 Score=41.51 Aligned_cols=47 Identities=13% Similarity=0.328 Sum_probs=36.0
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCccc---ceeEEEEecChhhHHHHHHhccc
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE---SLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~---~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+|...+..++|+|||+|+.-. +|. ..+++.||++|.+.+.-.+..++
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfk-----------fy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFK-----------FYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hcccCccceEEecccCCCCcc-----------cccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 355667899999999998421 333 45899999999999988776654
No 147
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=83.33 E-value=1.8 Score=42.21 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=28.0
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
-+|+|+|||+|.++..++.. .+. .++-||+|+.+..
T Consensus 124 ~~VLDIGCG~G~~~~~la~~---g~~-----~V~GiD~S~~~l~ 159 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA---GAK-----LVVGIDPSQLFLC 159 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc---CCC-----EEEEEcCCHHHHH
Confidence 58999999999999877653 121 4889999997653
No 148
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=83.32 E-value=1.8 Score=38.97 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=33.6
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+++|++||+|.++...+..- +-+++.||.++...+.-++.+.
T Consensus 51 ~~vLDLfaGsG~lglea~srg--------a~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRG--------AKVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Confidence 489999999999998877531 1258999999988876666654
No 149
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.29 E-value=4.6 Score=38.47 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=34.9
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+-+|+++|+|.||-+-.+.+.+. . ..+|+.||.|+.+.+.=+..+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~---~---~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP---S---LKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc---C---ceeeeeecCCHHHHHHHHHHHh
Confidence 456999999999997655555443 2 2379999999999887666554
No 150
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=83.24 E-value=4.4 Score=39.27 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=40.8
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
|+++..+.+-.+. .++.+. +....-.|+|.|||+|+++..... . ...++-+|+++.+.+.-+++
T Consensus 160 ~~~~~~l~~~la~----~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n 223 (329)
T TIGR01177 160 FFKPGSMDPKLAR----AMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN 223 (329)
T ss_pred ccCCCCCCHHHHH----HHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence 5555555554444 443321 222234899999999998644221 1 13688999999987766666
Q ss_pred cc
Q 020840 211 LK 212 (320)
Q Consensus 211 L~ 212 (320)
+.
T Consensus 224 l~ 225 (329)
T TIGR01177 224 LE 225 (329)
T ss_pred HH
Confidence 64
No 151
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=83.15 E-value=4.9 Score=38.40 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCc
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~ 221 (320)
.++=.+-+..+.++++....-+|+|||||-|.++..+.+.. .++++-|.+|+.-.+.-++++.... +.+
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~~~g--l~~- 112 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIREAG--LED- 112 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCST--SSS-
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHHhcC--CCC-
Confidence 34444444445556665545699999999999999877653 2468889999887765555554311 100
Q ss_pred ccchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccce
Q 020840 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH 265 (320)
Q Consensus 222 ~~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~ 265 (320)
...|.. .+..+++.. .=-|++-|.|-.++..
T Consensus 113 -----------~v~v~~-~D~~~~~~~-fD~IvSi~~~Ehvg~~ 143 (273)
T PF02353_consen 113 -----------RVEVRL-QDYRDLPGK-FDRIVSIEMFEHVGRK 143 (273)
T ss_dssp -----------TEEEEE-S-GGG---S--SEEEEESEGGGTCGG
T ss_pred -----------ceEEEE-eeccccCCC-CCEEEEEechhhcChh
Confidence 012222 122344443 2258888999999753
No 152
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=82.49 E-value=3.6 Score=38.60 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=49.3
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
.|+.-++-.--..|-|+|+...+. ..|.+-+|+-||.|.|.+++.++++ +. -.++.+||+.|...+..
T Consensus 49 dg~~q~~e~de~~y~e~l~h~~~~-----~~~~p~~VLiiGgG~G~~~~ell~~----~~---~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 49 DGDVQLSERDEFIYHEMLVHPPLL-----LHPNPKRVLIIGGGDGGTARELLKH----PP---VESITVVEIDPEVVELA 116 (246)
T ss_dssp TTEEEEETTTHHHHHHHHHHHHHH-----HSSST-EEEEEESTTSHHHHHHTTS----TT----SEEEEEES-HHHHHHH
T ss_pred CCeEEEEEechHHHHHHHhhhHhh-----cCCCcCceEEEcCCChhhhhhhhhc----CC---cceEEEEecChHHHHHH
Confidence 455444433335677887755442 2344569999999999988877653 21 13799999999999988
Q ss_pred HHhccc
Q 020840 208 HHNLKC 213 (320)
Q Consensus 208 ~e~L~~ 213 (320)
++.+..
T Consensus 117 ~~~f~~ 122 (246)
T PF01564_consen 117 RKYFPE 122 (246)
T ss_dssp HHHTHH
T ss_pred HHhchh
Confidence 887653
No 153
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=82.12 E-value=3.5 Score=38.61 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=27.8
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
..+||||+|+|++...+ .+++|+. .|.=||+...-..
T Consensus 50 pi~lEIGfG~G~~l~~~---A~~nP~~----nfiGiEi~~~~v~ 86 (227)
T COG0220 50 PIVLEIGFGMGEFLVEM---AKKNPEK----NFLGIEIRVPGVA 86 (227)
T ss_pred cEEEEECCCCCHHHHHH---HHHCCCC----CEEEEEEehHHHH
Confidence 38999999999976665 3456764 5899999865544
No 154
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=81.55 E-value=2.6 Score=40.04 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=49.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeec-
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA- 240 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~- 240 (320)
++|+++|||-|.|+.-+-+. . .+++-||+|+.+.+.-+..-.. .+..+.|-.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~----G-----a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~~ 113 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARL----G-----ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQA 113 (243)
T ss_pred CeEEEecCCccHhhHHHHHC----C-----CeeEEecCChHHHHHHHHhhhh------------------ccccccchhh
Confidence 69999999999877765442 1 3689999999987755432221 122333321
Q ss_pred ccccCCC--CCCEEEEEeccccccccee
Q 020840 241 ALEQVPS--GFPTIIVAHEFYDALPVHQ 266 (320)
Q Consensus 241 sleelp~--~~~~~iiANE~fDALPv~~ 266 (320)
..+++-. +..=+|+++|++--+|--.
T Consensus 114 ~~edl~~~~~~FDvV~cmEVlEHv~dp~ 141 (243)
T COG2227 114 TVEDLASAGGQFDVVTCMEVLEHVPDPE 141 (243)
T ss_pred hHHHHHhcCCCccEEEEhhHHHccCCHH
Confidence 1233322 2346999999998887544
No 155
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=81.25 E-value=1.7 Score=41.58 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=41.0
Q ss_pred HHHHHHHHHc-CCCCc--ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 147 VWAMCLWEQM-GQPNR--VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 147 ~~i~~~w~~~-g~p~~--l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
+|+...+-.+ ..+++ .+|+|+|||-|.....||+.-.. .++.++-.+.||.-.++-++.
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-----~~l~v~acDfsp~Ai~~vk~~ 116 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-----NRLKVYACDFSPRAIELVKKS 116 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC-----CCeEEEEcCCChHHHHHHHhc
Confidence 4555555443 22222 38999999999999999876432 246788999999887765553
No 156
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=80.05 E-value=3.6 Score=40.50 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=30.8
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
...+|+|||||+|- |+..+.+... -.|+-||+|..-.+.-+++.
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 45799999999998 8888876422 25899999987766555555
No 157
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=3.2 Score=41.92 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=25.7
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (320)
...||||||+|.|+.-|-.++... +++ .+++||..-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~-~~~---l~vlvdR~s 219 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQ-NVY---LFVLVDRKS 219 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccc-cEE---EEEeecccc
Confidence 689999999999999888776532 121 155677553
No 158
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=79.62 E-value=1.5 Score=41.89 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCCeecCCCh---hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcC-----cccceeEEEEec
Q 020840 128 EGDFITSPEV---SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN-----FTESLHIHLVEC 199 (320)
Q Consensus 128 ~GDFiTSpEI---sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~-----~~~~l~y~iVE~ 199 (320)
-+|+|++++= -..+.-+++..+-+.|..... ..+.|.|+|-|+|....-++..+..... ...++.|.-+|.
T Consensus 24 fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~-~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~ 102 (252)
T COG4121 24 FDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQ-EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIEL 102 (252)
T ss_pred hcccccccccchhhhHHHHHhccCcccccccccc-cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEe
Confidence 4677877662 234555566666556654443 4589999999999998888887764332 356788999998
Q ss_pred ChhhH
Q 020840 200 SPTLQ 204 (320)
Q Consensus 200 Sp~Lr 204 (320)
.|--.
T Consensus 103 ~P~~~ 107 (252)
T COG4121 103 DPFSP 107 (252)
T ss_pred CCCCh
Confidence 87543
No 159
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=79.35 E-value=7.1 Score=36.51 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 148 WAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 148 ~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
-+....+..+.. ....++|+|||+|.++.-+++. + .-+++-||+|+.+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~----g----a~~v~avD~~~~~ 110 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK----G----AKEVYGVDVGYNQ 110 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc----C----CCEEEEEeCCHHH
Confidence 334444444432 3458999999999999877653 1 2368999999943
No 160
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=79.19 E-value=6 Score=39.87 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=35.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.-.|+|+|||+|.++..+++.. + ..+++-+|+|+.+.+.-++++.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---~----~~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---P----QAQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence 3589999999999998887653 1 1368999999998877777664
No 161
>PLN02476 O-methyltransferase
Probab=78.96 E-value=6.5 Score=37.97 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 136 EVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 136 EIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+++.-|+.+...+ ++..| -+|+|+|.|.|.-+.-+...+.. .-+++-||.++...+.-++.+..
T Consensus 101 ~v~~~~g~lL~~L~-----~~~~a--k~VLEIGT~tGySal~lA~al~~------~G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 101 QVSPDQAQLLAMLV-----QILGA--ERCIEVGVYTGYSSLAVALVLPE------SGCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred ccCHHHHHHHHHHH-----HhcCC--CeEEEecCCCCHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 34555555543322 23334 38999999999999988776532 12588999999998888887754
No 162
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=77.79 E-value=7 Score=35.85 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=32.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
-.++++|||+|+++.++... . ...+++-||.++...+.=+++.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~---~----p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALA---G----PSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred CEEEEeCCCccHHHHHHHHh---C----CCceEEEEecCHHHHHHHHHHH
Confidence 48999999999999998732 2 3357899999887766544444
No 163
>PTZ00357 methyltransferase; Provisional
Probab=77.26 E-value=11 Score=41.20 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=33.0
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (320)
.+.|+=+|||||=|..-.|++++... -+++++.||.+|.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~g---vkVrIyAVEKNPp 739 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALG---VRLRIFAIEKNLP 739 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcC---CcEEEEEEecCcc
Confidence 46799999999999999999987543 2678999999955
No 164
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=76.44 E-value=4.4 Score=38.60 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
+.+|.|..-|--+=.+|.++.+.- ..+..|.+--|++||||+|--+. +|.. + -..++=||+||.|-+.-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLEL--Lalp~~~~~~iLDIGCGsGLSg~-vL~~----~----Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALEL--LALPGPKSGLILDIGCGSGLSGS-VLSD----S----GHQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHH--hhCCCCCCcEEEEeccCCCcchh-eecc----C----CceEEeecCCHHHHHHH
Confidence 567888888877778888776632 22333346789999999996444 3321 1 13588899999997654
Q ss_pred H
Q 020840 208 H 208 (320)
Q Consensus 208 ~ 208 (320)
.
T Consensus 89 ~ 89 (270)
T KOG1541|consen 89 V 89 (270)
T ss_pred H
Confidence 4
No 165
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=75.87 E-value=10 Score=34.96 Aligned_cols=38 Identities=16% Similarity=-0.036 Sum_probs=28.9
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
..-+++++|||.|.-|.-+.+ .-.+++-||+||.-.+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~---------~G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE---------QGHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh---------CCCeEEEEccCHHHHHH
Confidence 335999999999998776643 12369999999986654
No 166
>PRK00536 speE spermidine synthase; Provisional
Probab=75.33 E-value=9.5 Score=36.52 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 140 ~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+|=|||+.=-+. ..|.+-+|+=+|+|.|..++.+|++ |+ ++++||+.+...+.-++.|..
T Consensus 57 iYHEmLvHppl~-----~h~~pk~VLIiGGGDGg~~REvLkh----~~-----~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 57 IESELLAHMGGC-----TKKELKEVLIVDGFDLELAHQLFKY----DT-----HVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred hHHHHHHHHHHh-----hCCCCCeEEEEcCCchHHHHHHHCc----CC-----eeEEEECCHHHHHHHHHHCHH
Confidence 677877664432 3455568999999999999998876 32 799999999999888886654
No 167
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=73.50 E-value=11 Score=34.53 Aligned_cols=37 Identities=16% Similarity=-0.051 Sum_probs=28.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
.-+++++|||.|.-|.-+.+ . -.+++-||+||...+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~----~-----G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE----Q-----GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh----C-----CCeEEEEeCCHHHHHH
Confidence 35999999999998776542 1 2369999999998774
No 168
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.45 E-value=14 Score=34.35 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=35.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD 215 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~ 215 (320)
+.-.+|||||+|--..-+...+. ....|..+|++|.-.+.=+++..++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------~~~~~latDiNp~A~~~Tl~TA~~n~ 92 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------PQALYLATDINPEALEATLETARCNR 92 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------CCceEEEecCCHHHHHHHHHHHHhcC
Confidence 35789999999985554433322 23468999999999988888877643
No 169
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=72.77 E-value=10 Score=36.88 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 136 EVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 136 EIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
+|-+.++.-||.-+ | ...+||+|+|+-+=++-+|++++.... .++|+-|++|...-..
T Consensus 64 aIl~~~a~Eia~~~-------g---~~~lveLGsGns~Ktr~Llda~~~~~~---~~ryvpiDv~a~iL~~ 121 (321)
T COG4301 64 AILQARAAEIASIT-------G---ACTLVELGSGNSTKTRILLDALAHRGS---LLRYVPIDVSASILRA 121 (321)
T ss_pred HHHHHHHHHHHHhh-------C---cceEEEecCCccHHHHHHHHHhhhcCC---cceeeeecccHHHHHH
Confidence 45566665555432 4 369999999999999999999975322 2579999999875443
No 170
>PLN02672 methionine S-methyltransferase
Probab=72.51 E-value=5.1 Score=45.50 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=35.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.+|+|+|||+|.++..+.... | ..+++.||+||...+.-++++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---~----~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---L----PSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999999887643 2 1369999999999887777664
No 171
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=71.48 E-value=7 Score=37.68 Aligned_cols=71 Identities=21% Similarity=0.361 Sum_probs=42.2
Q ss_pred CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.+|+.+=|+=|.+- |..+|..-- ..|. ..-...++++||||.|.-...+-..++ +++.-|+|+.|
T Consensus 64 ~LgRG~MFvfS~~Q---~~~LL~~~~-~~~~--~~~~~~~lLDlGAGdG~VT~~l~~~f~---------~v~aTE~S~~M 128 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQ---FRKLLRISG-FSWN--PDWKDKSLLDLGAGDGEVTERLAPLFK---------EVYATEASPPM 128 (265)
T ss_pred hhcCCcEEEecHHH---HHHHhhhhc-cCCC--CcccCCceEEecCCCcHHHHHHHhhcc---------eEEeecCCHHH
Confidence 46888888877542 222222110 0111 101345899999999987666533222 37788999999
Q ss_pred HHHHHH
Q 020840 204 QKLQHH 209 (320)
Q Consensus 204 r~~Q~e 209 (320)
|.+-++
T Consensus 129 r~rL~~ 134 (265)
T PF05219_consen 129 RWRLSK 134 (265)
T ss_pred HHHHHh
Confidence 876544
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=71.38 E-value=14 Score=34.57 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|||.+.|.=+.-+++.+.. ..+++-||.+|.+.+.-++.++.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~------~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPD------DGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCC------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 48999999999988888776532 23799999999999999998865
No 173
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=70.60 E-value=8.6 Score=36.16 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=35.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||.|..+..+...+.. .-.++-+|+|+...+.-++++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~------~g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKN------EGAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCC------CCEEEEEcCCHHHHHHHHHHHHH
Confidence 48999999999999988775532 12588999999988766666643
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=70.35 E-value=15 Score=36.19 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.2
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+++|||+|+|-++.-+... .+ ..+++.+|+++...+.-++.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~---~~----~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVH---EY----GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHhh---CC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence 4579999999999665544321 12 24799999999988877777754
No 175
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=70.30 E-value=12 Score=38.04 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=35.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||+|..+..+.+.+.. .-+++-||+|+.+.+.-++++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~------~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQN------RGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCC------CcEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988877765432 1268999999999887777664
No 176
>PLN03075 nicotianamine synthase; Provisional
Probab=70.30 E-value=20 Score=35.03 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=34.9
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
+-+|+|+|+|.|-+..=++-.. .+| ..+++-+|++|...+.-++.+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~-~~p----~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKH-HLP----TTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHh-cCC----CCEEEEEeCCHHHHHHHHHHhh
Confidence 3589999999997766555431 123 3479999999999988887763
No 177
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=70.17 E-value=8.7 Score=39.75 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=54.3
Q ss_pred CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (320)
Q Consensus 128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (320)
+|+|+|+.+|+.+-.++|.- .|.. +|++-=||+|.|.....+++++.. ..+.++-.|+.+.-...-
T Consensus 165 ~GEfyTP~~v~~liv~~l~~----------~~~~-~i~DpacGsgg~l~~a~~~~~~~~---~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP----------EPRN-SIYDPACGSGGMLLQAAKYLKRHQ---DEIFIYGQEINDTTYRLA 230 (489)
T ss_pred CCccCChHHHHHHHHHHcCC----------CCCC-eecCCCCchhHHHHHHHHHHHhhc---cceeEEEEeCCHHHHHHH
Confidence 49999999999887777533 2222 899999999999999999986432 257899999988877766
Q ss_pred HHhc
Q 020840 208 HHNL 211 (320)
Q Consensus 208 ~e~L 211 (320)
+-.+
T Consensus 231 ~mN~ 234 (489)
T COG0286 231 KMNL 234 (489)
T ss_pred HHHH
Confidence 6544
No 178
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=70.10 E-value=10 Score=30.54 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=39.6
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhcCcCccc--ceeEEEEecChhhHHHHHHhc
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE--SLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~--~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
...+++.|+=+|+|..+ +||.++...+.-+. .+++++.|.+|..-+++-=.|
T Consensus 20 ~~~~~~~iLl~G~gD~R---hvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL 73 (100)
T PF14737_consen 20 PPDEDLNILLLGCGDLR---HVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLL 73 (100)
T ss_pred CCCCCceEEEecCccHH---HHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHH
Confidence 34478999999999987 77888765444433 589999999999888775433
No 179
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=69.21 E-value=12 Score=37.79 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=35.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-.|+|+|||+|..+..+++.+.. ..+++-||+|+...+.-++++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~------~~~v~avDi~~~~l~~~~~n~~ 296 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKN------TGKVVALDIHEHKLKLIEENAK 296 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999999988876521 2368999999988776666664
No 180
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=68.46 E-value=19 Score=32.93 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.1
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
++.+++++|||.|+.+.-+.+. -..++-||.|+.-.+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~---------G~~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ---------GFDVTAVDISPVALEK 67 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT---------T-EEEEEESSHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHC---------CCeEEEEECCHHHHHH
Confidence 4569999999999998865432 2369999999965443
No 181
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=68.44 E-value=15 Score=37.00 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=36.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||.|..+..+++.+. ..+++-+|+|+...+.-++++..
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999999998887542 23689999999988777776653
No 182
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=65.62 E-value=6.4 Score=38.17 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=33.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
..|+|+|||.|-|..-+-|.- .++.-||+|+.+.+.-++.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---------a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---------AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhC---------CeeEeecccHHHHHHHHHh
Confidence 469999999999988776642 2589999999999988877
No 183
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=64.67 E-value=17 Score=36.43 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=36.4
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+++|+|+.+|+|.++.-.+.... . .-+++++|++|...+.-++++..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~---g---a~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE---G---VREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC---C---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 47999999999999877665431 1 12699999999999888877743
No 184
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=64.51 E-value=23 Score=35.62 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.7
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
..|+|++||+|.++.-+.... + ..+++.+|++|...+.-++++.
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~---~----~~~V~a~Din~~Av~~a~~N~~ 102 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET---G----VEKVTLNDINPDAVELIKKNLE 102 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence 489999999999997665432 1 1368999999999887666653
No 185
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.80 E-value=11 Score=38.39 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
++.|||+.-.++.....++.....-..+++|.|=|.++.-+..+.+..+. +=+-++..-..++..|++.++
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~s----vG~eim~~pS~~a~~~~~~~k 240 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKS----VGFEIMDKPSQCAELNKEEFK 240 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccc----cceeeecCcHHHHHHHHHHHH
Confidence 67899999999999998887665568999999999999988877653222 224455555556667776554
No 186
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=62.08 E-value=18 Score=36.04 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCcc-cHHHHHHHhhcCCCCc----ccCCC--CCCCC--CCCeecCC----ChhH--HHHHHHHHH
Q 020840 84 SELVKHLKGIIKFRGGPI-SVAEYMEEVLTNPKAG----FYINR--DVFGA--EGDFITSP----EVSQ--MFGEMVGVW 148 (320)
Q Consensus 84 ~~L~~~i~~~I~~~~GpI-sf~dfM~~aLY~P~~G----YY~~~--~~~G~--~GDFiTSp----EIsp--~FGe~IA~~ 148 (320)
..|...|.+.-...|.|+ .++-|+.+||...-.| =|..- ..... ..+.+.+- +++| -||+..|++
T Consensus 21 ~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~P~~~fa~~taNq 100 (374)
T PF03514_consen 21 QELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAAYQLFYELSPFLKFAHFTANQ 100 (374)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHHHHHHHHHhhHHhhhhhchhH
Confidence 444444544433333333 5777888888765555 22110 00100 12222221 3344 467888887
Q ss_pred HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEec
Q 020840 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (320)
Q Consensus 149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (320)
.+ .+.+..-..++||++|-|.|.-=..+++.|...|.-...++++-|..
T Consensus 101 aI--leA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 101 AI--LEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HH--HHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 64 33333336799999999999999999999987655556789999988
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=60.33 E-value=35 Score=32.27 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 137 Isp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
+++.-|++|...+ + ...| -+|+|+|.+.|.=+.-+.+.+.. ..+++-||.+|...+.-++.+..
T Consensus 63 ~~~~~g~lL~~l~----~-~~~a--k~iLEiGT~~GySal~la~al~~------~g~v~tiE~~~~~~~~Ar~~~~~ 126 (247)
T PLN02589 63 TSADEGQFLNMLL----K-LINA--KNTMEIGVYTGYSLLATALALPE------DGKILAMDINRENYELGLPVIQK 126 (247)
T ss_pred cCHHHHHHHHHHH----H-HhCC--CEEEEEeChhhHHHHHHHhhCCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3555566554433 2 2233 38999999999877777665421 24799999999998877777753
No 188
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=58.37 E-value=24 Score=35.80 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=36.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+|+|||.|..+..++..+.. .-+++-+|+|+...+.-++++..
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~------~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKD------QGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999999988776432 23689999999988777776643
No 189
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=57.83 E-value=12 Score=35.76 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=29.6
Q ss_pred cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (320)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (320)
.|.-.+-.++|||||-|...++||++=. -+..+||+.+...
T Consensus 46 A~~~~~~~v~eIgPgpggitR~il~a~~--------~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 46 AGNLTNAYVYEIGPGPGGITRSILNADV--------ARLLVVEKDTRFI 86 (326)
T ss_pred ccccccceeEEecCCCCchhHHHHhcch--------hheeeeeeccccC
Confidence 3444566899999999999999997621 1456777776553
No 190
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=57.61 E-value=17 Score=32.11 Aligned_cols=53 Identities=28% Similarity=0.377 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcceEE--EecCCchhHHHHHHHHHhcCcCcccceeEEEEec
Q 020840 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (320)
Q Consensus 138 sp~FGe~IA~~i~~~w~~~g~p~~l~Iv--EiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (320)
..-||+.||..+ .+..+.++ ++|||+=||++.|++.+.....+ .+=.|+||+.
T Consensus 11 t~~lg~~l~~~l--------~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V-~SPTFtlv~~ 65 (149)
T COG0802 11 TLALGERLAEAL--------KAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNV-KSPTFTLVEE 65 (149)
T ss_pred HHHHHHHHHhhC--------CCCCEEEEEcCCcCChHHHHHHHHHHcCCCCcc-cCCCeeeehh
Confidence 456788877765 22333333 89999999999999998631111 2224666644
No 191
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=56.89 E-value=33 Score=34.70 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=34.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||.|..+..+.+.... .-+++-+|+++...+.-++++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~------~g~v~a~D~~~~rl~~~~~n~~ 298 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGD------QGEIWAVDRSASRLKKLQENAQ 298 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCC------CceEEEEcCCHHHHHHHHHHHH
Confidence 48999999999999888765421 2368999999987766555554
No 192
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.38 E-value=15 Score=35.43 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=27.6
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
-+++++|||+|-+...| |.+.. +..=|++|.+|-++-.+
T Consensus 127 ~~~lDLGCGTGL~G~~l-R~~a~--------~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 127 RRMLDLGCGTGLTGEAL-RDMAD--------RLTGVDISENMLAKAHE 165 (287)
T ss_pred ceeeecccCcCcccHhH-HHHHh--------hccCCchhHHHHHHHHh
Confidence 47999999999776543 43322 35678899998776655
No 193
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=55.92 E-value=21 Score=32.02 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=41.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 133 TSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 133 TSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
|=|....+ =|+|-.++... . -....++++=||+|.|+...|.. -+-++++||.++...+.-++++.
T Consensus 21 ~RPT~drv-realFniL~~~-~----~~g~~vLDLFaGSGalGlEALSR--------GA~~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 21 TRPTTDRV-REALFNILQPR-N----LEGARVLDLFAGSGALGLEALSR--------GAKSVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp S-SSSHHH-HHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHT--------T-SEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCcHHH-HHHHHHHhccc-c----cCCCeEEEcCCccCccHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHH
Confidence 33444333 56666666543 1 12258999999999999665432 12368999999999887777775
Q ss_pred c
Q 020840 213 C 213 (320)
Q Consensus 213 ~ 213 (320)
.
T Consensus 87 ~ 87 (183)
T PF03602_consen 87 K 87 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=55.88 E-value=24 Score=33.96 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
.++|+|||+| .|.-++... |+ +++-+|+|+.+-++-++
T Consensus 36 ~a~DvG~G~G-qa~~~iae~------~k--~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEH------YK--EVIATDVSEAMLKVAKK 73 (261)
T ss_pred eEEEeccCCC-cchHHHHHh------hh--hheeecCCHHHHHHhhc
Confidence 7999999999 555444432 11 47889999988775554
No 195
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=54.96 E-value=47 Score=31.13 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=33.5
Q ss_pred HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
|..+..+..-+|+-.|||+|.-|.-+.+. -.+++-||+|+.-.+...+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~---------G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK---------GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC---------CCcEEEEecCHHHHHHHHH
Confidence 33344444459999999999977655431 2358999999988776544
No 196
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=54.44 E-value=20 Score=36.17 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=31.6
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++...+. . ...+++.||+|+...+.-++++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~---~-----ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALM---G-----GCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred CeEEEeccCCCHHHHHHHh---C-----CCCEEEEEECCHHHHHHHHHHHH
Confidence 4899999999998654321 1 12368999999999887666654
No 197
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=52.96 E-value=12 Score=35.23 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+.+|+|||=|+...++|--+ | + ++-|||+.+.+.+.-++.|..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-----f-~--~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-----F-D--EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-------S--EEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHh-----c-C--EeEEeccCHHHHHHHHHHhcc
Confidence 45689999999999999886321 1 1 589999999998887777765
No 198
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=52.11 E-value=7.2 Score=41.40 Aligned_cols=42 Identities=43% Similarity=0.851 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCCcccCCC--CC--C-C----CCCCee--cCCChhHHHHHH
Q 020840 103 VAEYMEEVLTNPKAGFYINR--DV--F-G----AEGDFI--TSPEVSQMFGEM 144 (320)
Q Consensus 103 f~dfM~~aLY~P~~GYY~~~--~~--~-G----~~GDFi--TSpEIsp~FGe~ 144 (320)
.-+||+.-|-||..|+|... +. + | ++|-|| |+-||.++||+-
T Consensus 364 I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~ 416 (786)
T KOG2244|consen 364 ILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGEN 416 (786)
T ss_pred HHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCC
Confidence 45799999999999999863 22 2 2 478898 899999999875
No 199
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=51.97 E-value=37 Score=31.86 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=42.0
Q ss_pred CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 130 DFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
|-.|-.|---+|-++|+.-.. -...++|+|+|-|+.---.+ +-+++-||..|.-...-++
T Consensus 13 ~LL~D~eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~---------A~rViAiE~dPk~a~~a~e 72 (252)
T COG4076 13 DLLRDVERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHA---------AERVIAIEKDPKRARLAEE 72 (252)
T ss_pred hhhhhHHHHHHHHHHHHHHhh-----------hceeeccCCcchHHHHHHhh---------hceEEEEecCcHHHHHhhh
Confidence 333444444567777766432 26899999999876533222 2268899999998888888
Q ss_pred hcc
Q 020840 210 NLK 212 (320)
Q Consensus 210 ~L~ 212 (320)
+|.
T Consensus 73 N~~ 75 (252)
T COG4076 73 NLH 75 (252)
T ss_pred cCC
Confidence 763
No 200
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=51.46 E-value=23 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=34.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
-+|+|+|||+|.++..++.. .+-+++.||+|+...+.-++++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~--------Ga~~V~~vD~s~~al~~a~~N~~ 582 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG--------GAKSTTTVDMSNTYLEWAERNFA 582 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 38999999999999887652 11269999999999887777664
No 201
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=51.37 E-value=22 Score=33.14 Aligned_cols=87 Identities=22% Similarity=0.374 Sum_probs=47.4
Q ss_pred ccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHH----HHHHHHHHHHHHHcCCCCcc-eEEEecCCchhHH
Q 020840 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG----EMVGVWAMCLWEQMGQPNRV-NLVELGPGRGTLM 175 (320)
Q Consensus 101 Isf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FG----e~IA~~i~~~w~~~g~p~~l-~IvEiGaG~GtLa 175 (320)
+-..+|+. ++|.-+.-=|+. .|..|+- +|| +-|-.|+.+........+.. +|+++|+|+|.|.
T Consensus 15 LGtK~yWD-~~Y~~El~Nfr~---hgd~GEv--------WFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L 82 (227)
T KOG1271|consen 15 LGTKSYWD-AAYELELTNFRE---HGDEGEV--------WFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLL 82 (227)
T ss_pred cchHHHHH-HHHHHHHhhccc---CCCccce--------ecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHH
Confidence 55778874 456555444442 4555542 233 23444554433311111112 8999999999987
Q ss_pred HHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 176 ADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 176 ~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
..+... .++.- .+=|+-|+.-.+.
T Consensus 83 ~~L~~e--gf~~~-----L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 83 FQLAKE--GFQSK-----LTGVDYSEKAVEL 106 (227)
T ss_pred HHHHHh--cCCCC-----ccccccCHHHHHH
Confidence 776553 23321 3456677766555
No 202
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=50.94 E-value=21 Score=33.17 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.9
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
.|+|||+|+|.-+..+-.. +|. +++.--|..+.++.--+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~---lP~----l~WqPSD~~~~~~~sI~a 67 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA---LPH----LTWQPSDPDDNLRPSIRA 67 (204)
T ss_pred eEEEEcCCccHHHHHHHHH---CCC----CEEcCCCCChHHHhhHHH
Confidence 6999999999988776544 454 467777888888643333
No 203
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=48.88 E-value=62 Score=34.39 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=44.2
Q ss_pred HHHHHHHHHH-----HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc----Cc-CcccceeEEEEecChhhHHHHHH
Q 020840 141 FGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK----FK-NFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 141 FGe~IA~~i~-----~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~----~p-~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
+.|+...++. +.|...+ ...++|+|+|=|+|....-.++.+++ .| ....+++|+-||.-|-.++.-++
T Consensus 34 ~~e~~~~f~~~~~l~~r~~~~~-~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~ 111 (662)
T PRK01747 34 LEETRYVFLGGNGLPERWAEHP-RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLAR 111 (662)
T ss_pred HHHhhhhhhcCCCHHHHHhcCC-CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHH
Confidence 4555555543 2343322 24599999999999988888887742 23 23457899999987754443333
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=48.14 E-value=70 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=37.2
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-.+|+.++|.|..+..||+.+. ...+++-+|.+|.+.+.-+++|..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~------~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLG------PKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCC------CCCEEEEEcCCHHHHHHHHHhhcc
Confidence 4899999999999999997652 123688999999998887777743
No 205
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=47.96 E-value=46 Score=24.60 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
++++|||.|... ++..+.... ..+.-+|.++.+...++..
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 91 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGGRG-----AYVVGVDLSPEMLALARAR 91 (257)
T ss_pred eEEecCCcCHHH--HHHHhCCCC-----ceEEEEeCCHHHHHHHHhh
Confidence 999999999987 222222111 2345589999887765443
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=47.69 E-value=37 Score=35.30 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=27.0
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.-.+||||||+|.++..+- +.+|+. .|.-||++..-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A---~~~p~~----~~iGiE~~~~~ 383 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQA---KMNPDA----LFIGVEVYLNG 383 (506)
T ss_pred CceEEEECCCchHHHHHHH---HhCCCC----CEEEEEeeHHH
Confidence 4589999999999776553 346663 58889998763
No 207
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=46.29 E-value=9.7 Score=38.66 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=28.9
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
+-.|+++|+|-||-+-. .-..+|++- +.+|||.||.|+++=-
T Consensus 114 pqsiLDvG~GPgtgl~A---~n~i~Pdl~---sa~ile~sp~lrkV~~ 155 (484)
T COG5459 114 PQSILDVGAGPGTGLWA---LNDIWPDLK---SAVILEASPALRKVGD 155 (484)
T ss_pred cchhhccCCCCchhhhh---hcccCCCch---hhhhhccCHHHHHHHH
Confidence 45799999998884322 112246653 4789999999998653
No 208
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=45.98 E-value=37 Score=32.89 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=37.5
Q ss_pred CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
++..+++|||.+|+|...|-..+.. ..+.=|||.|.|.+.-++.+.-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-------r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-------RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-------ceeeEeeccHHHHHHHHHhccc
Confidence 3468999999999999999776532 2378899999998888877753
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=45.46 E-value=21 Score=33.63 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=14.4
Q ss_pred CCCCcceEEEecCCchhHHHHH
Q 020840 157 GQPNRVNLVELGPGRGTLMADL 178 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DI 178 (320)
..|....|.++|||.+.||..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH-
T ss_pred hcCCCEEEEECCCchHHHHHhc
Confidence 4567789999999999999654
No 210
>PTZ00387 epsilon tubulin; Provisional
Probab=44.53 E-value=99 Score=32.03 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=45.2
Q ss_pred hcCCCCcccCCCCCCCCCCCeecC-CChhHHHHHHHHHHHHHHHHHcCCCCcce-EEEecCCch-hHHHHHHHHHhc-Cc
Q 020840 111 LTNPKAGFYINRDVFGAEGDFITS-PEVSQMFGEMVGVWAMCLWEQMGQPNRVN-LVELGPGRG-TLMADLLRGASK-FK 186 (320)
Q Consensus 111 LY~P~~GYY~~~~~~G~~GDFiTS-pEIsp~FGe~IA~~i~~~w~~~g~p~~l~-IvEiGaG~G-tLa~DIL~~l~~-~p 186 (320)
||+|+.=.+.. -|+.+.|-.. ...++-+.+.+...|..+.++.+....+. +--+|+|+| -++.-|++.++. +|
T Consensus 85 ~f~~~~~i~~~---~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~ 161 (465)
T PTZ00387 85 LFDENFFVSDV---SGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFP 161 (465)
T ss_pred ccCcccccccC---CCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcc
Confidence 56665322221 3555555333 22355666777777777777776654444 448999998 677888888874 55
Q ss_pred C
Q 020840 187 N 187 (320)
Q Consensus 187 ~ 187 (320)
+
T Consensus 162 ~ 162 (465)
T PTZ00387 162 H 162 (465)
T ss_pred c
Confidence 4
No 211
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.83 E-value=18 Score=39.18 Aligned_cols=41 Identities=34% Similarity=0.668 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCcccCCC--CCCCCCCCeecC--CChhHHHHH
Q 020840 103 VAEYMEEVLTNPKAGFYINR--DVFGAEGDFITS--PEVSQMFGE 143 (320)
Q Consensus 103 f~dfM~~aLY~P~~GYY~~~--~~~G~~GDFiTS--pEIsp~FGe 143 (320)
.-+||..-||.|+.|||.+. +..|.+|-|||= -||..+-|+
T Consensus 301 i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~ 345 (667)
T COG1331 301 ILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE 345 (667)
T ss_pred HHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhcc
Confidence 56799999999999999984 678999999973 558888883
No 212
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=43.64 E-value=42 Score=24.21 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=29.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhh
Q 020840 74 PEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVL 111 (320)
Q Consensus 74 ~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aL 111 (320)
|+.-+.+.....|.+.|.+.|+.. |||..+.-.+..+
T Consensus 1 p~~f~~~~~~~~L~~~i~~Iv~~E-gPI~~~~L~~Ri~ 37 (52)
T PF11784_consen 1 PDDFYHPEYRPQLARMIRQIVEVE-GPIHEDELARRIA 37 (52)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHc-CCccHHHHHHHHH
Confidence 445555666788999999999987 9999988776654
No 213
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=42.99 E-value=62 Score=32.83 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHcC---CC-CcceEEEecCCch----hHHHHHHHHHh
Q 020840 135 PEVSQMFGEMVGVWAMCLWEQMG---QP-NRVNLVELGPGRG----TLMADLLRGAS 183 (320)
Q Consensus 135 pEIsp~FGe~IA~~i~~~w~~~g---~p-~~l~IvEiGaG~G----tLa~DIL~~l~ 183 (320)
..+....+..+.-++.+....+. .| ..+.|+|+|||+| .++..|++.++
T Consensus 34 S~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 34 SQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 33444555555444444333332 24 5789999999999 56667777775
No 214
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=42.74 E-value=75 Score=31.30 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
..|+|-|-|+|.|...|.++..-.. +.+-.|.-....+.-++-++
T Consensus 107 svV~EsGTGSGSlShaiaraV~ptG------hl~tfefH~~Ra~ka~eeFr 151 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAVAPTG------HLYTFEFHETRAEKALEEFR 151 (314)
T ss_pred CEEEecCCCcchHHHHHHHhhCcCc------ceEEEEecHHHHHHHHHHHH
Confidence 5899999999999999999875322 45667776655554444443
No 215
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.30 E-value=0.17 Score=50.30 Aligned_cols=158 Identities=9% Similarity=-0.163 Sum_probs=90.4
Q ss_pred HHHHHHHHHhc--CCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCC------
Q 020840 87 VKHLKGIIKFR--GGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ------ 158 (320)
Q Consensus 87 ~~~i~~~I~~~--~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~------ 158 (320)
+++.++..... |=.++-..||+..++.+--+||.=..-.+-.++|.|.+++++.|++.|..|---.|..++.
T Consensus 52 aeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~ 131 (415)
T KOG2901|consen 52 AEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLT 131 (415)
T ss_pred HHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEehhhhCCccceeEEEeccchhHHHHHHHHHHH
Confidence 44444444431 2235566999999999999998754334457899999999999998887766555544432
Q ss_pred -----CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc----cccCCcCcccchhhhc
Q 020840 159 -----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC----MDENNANDNVEERTIS 229 (320)
Q Consensus 159 -----p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~----~~~~~~~~~~~~~~~~ 229 (320)
.-...+||+-+ .|..++. .++.++.++.|.++.-. ++.. ++..+.+-...+
T Consensus 132 kf~~~~vs~hLve~S~--------~ls~lq~-----~~l~~~~~~~s~~~~~t---t~sg~~~~w~~sl~dvp~g~---- 191 (415)
T KOG2901|consen 132 KFKDEDLSVHLVEVSP--------ALSKLQA-----QNLCCTDESLSEYKKGS---TLSGTPIHWHRTLQDVPSGF---- 191 (415)
T ss_pred HhcCceeeEEEEEecH--------hHHHHhh-----cceeEeeccHHHHhhcc---ccccCchhcccChhhcCCce----
Confidence 22456666643 3333322 34678999988733211 1111 111111100000
Q ss_pred ccCCCCeEeecccccCCCCCCEEEEEecccccccceeEEEeCC
Q 020840 230 SLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272 (320)
Q Consensus 230 ~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~ 272 (320)
....+.|+-+.=.++... ++++|=.||++++.++.
T Consensus 192 --s~iiahef~DalpVhkfq------k~~~~w~eV~vd~~~d~ 226 (415)
T KOG2901|consen 192 --TLIIAHEFFDALPVHQFQ------KSTRGWCEVMVDVGEDS 226 (415)
T ss_pred --EEEEhHHhhhcCcchhhc------cCCCCcceeEEeccCcc
Confidence 012345654332333331 88999999999988744
No 216
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=38.61 E-value=37 Score=33.57 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=29.7
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L 211 (320)
.-+|+++|||+|..|..+++.= +-.++-||+++.. -.|-+.+
T Consensus 116 gk~VLDIGC~nGY~~frM~~~G--------A~~ViGiDP~~lf-~~QF~~i 157 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRG--------AKSVIGIDPSPLF-YLQFEAI 157 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcC--------CCEEEEECCChHH-HHHHHHH
Confidence 3489999999999998887541 2257889988765 3443333
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=38.50 E-value=1.1e+02 Score=28.09 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 152 ~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
.|..++.+...+|+--|||+|.-|.-+.+ . -.+++-||+|+.-.+.
T Consensus 29 ~~~~l~~~~~~rvLvPgCG~g~D~~~La~----~-----G~~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 29 YLDSLALKPGGRVLVPGCGKGYDMLWLAE----Q-----GHDVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHTTSTSEEEEETTTTTSCHHHHHHH----T-----TEEEEEEES-HHHHHH
T ss_pred HHHhcCCCCCCeEEEeCCCChHHHHHHHH----C-----CCeEEEEecCHHHHHH
Confidence 34444555556899999999985544332 1 1368999999987665
No 218
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=36.43 E-value=52 Score=33.15 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 145 VGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 145 IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
.-+||-.++.+.-.+..-.+.++|||.|- |+|++-+.- --.|+.|+|+..-.+
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGG---DLlKw~kAg-----I~~~igiDIAevSI~ 154 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGG---DLLKWDKAG-----IGEYIGIDIAEVSIN 154 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcc---cHhHhhhhc-----ccceEeeehhhccHH
Confidence 34455444433322222367789999997 998886431 114778877765443
No 219
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=36.40 E-value=2.8e+02 Score=24.51 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=33.7
Q ss_pred ceEEEecCCchhHHHHHHHHHhc-CcCcc--cceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASK-FKNFT--ESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~-~p~~~--~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-.|++-=||+||+..--...... .| .. +...++-+|+++...+.-++++..
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHHHHHh
Confidence 48999999999987665444433 23 11 134588999999998887777753
No 220
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.39 E-value=10 Score=37.79 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=26.1
Q ss_pred HhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHH
Q 020840 109 EVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGE 143 (320)
Q Consensus 109 ~aLY~P~~GYY~~---~~~~G~~GDFiTSpEIsp~FGe 143 (320)
.|||.|+||||.. ++..|..-|+.|---+=.+||+
T Consensus 75 ~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~ 112 (409)
T COG3876 75 TALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGV 112 (409)
T ss_pred EEEeccccccccccccccccCCCcccccCCeEEEeeec
Confidence 4899999999974 3567888888886444446664
No 221
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=36.18 E-value=2.1e+02 Score=27.56 Aligned_cols=115 Identities=10% Similarity=-0.031 Sum_probs=70.2
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCCh----hHHHHHHHHHHHHHHHHHc
Q 020840 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV----SQMFGEMVGVWAMCLWEQM 156 (320)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEI----sp~FGe~IA~~i~~~w~~~ 156 (320)
.+.+.+...|..+++.. |.=.|++|.....-+ ..-.. .-=|.+|.++. .+-.=+.++..+...+...
T Consensus 22 ~k~~~v~~Rl~~~~~~~-~~~~~~~y~~~l~~~-----~~e~~---~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~ 92 (268)
T COG1352 22 YKRTLVYRRLSRRLRKL-GLKNFEEYLNLLESD-----SEELQ---AFLDALTINVTEFFRDPEHFEELRDEVLPELVKR 92 (268)
T ss_pred hhHHHHHHHHHHHHHHh-CcccHHHHHHHHhCC-----HHHHH---HHHHHhhhccchhccCcHHHHHHHHHHHHHHHhh
Confidence 56788888899999887 644589988766544 11100 00133444443 3444466777777766554
Q ss_pred CCCCcceEEEecCCchhHHHHHHHHHhc-CcCc-ccceeEEEEecChhhH
Q 020840 157 GQPNRVNLVELGPGRGTLMADLLRGASK-FKNF-TESLHIHLVECSPTLQ 204 (320)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~-~~~l~y~iVE~Sp~Lr 204 (320)
..+.+++|...||++|.=.-.|--.+.+ .+.+ -..++++-.|+|...-
T Consensus 93 ~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 93 KKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred ccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 4436799999999999644444333332 2221 1257889999997653
No 222
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=35.68 E-value=81 Score=25.99 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=20.5
Q ss_pred EecCCch--hHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840 166 ELGPGRG--TLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (320)
Q Consensus 166 EiGaG~G--tLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~ 210 (320)
++||+.| ......+.. ...+ ..+++.+|++|.+.+.-+++
T Consensus 1 DvGA~~G~~~~~~~~~~~-~~~~----~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK-KCGP----GGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHH-HTS------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHH-HcCC----CCEEEEEECCHHHHHHHhHH
Confidence 6899999 433333221 1122 24689999999986655555
No 223
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=35.18 E-value=1.2e+02 Score=31.43 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=27.4
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
++|++|+|.|.|++-| .+.-.+.+.-||-|..+-++
T Consensus 156 ~vvD~GaG~G~LSr~l--------Sl~y~lsV~aIegsq~~~~r 191 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFL--------SLGYGLSVKAIEGSQRLVER 191 (476)
T ss_pred eeEEcCCCchHHHHHH--------hhccCceEEEeccchHHHHH
Confidence 8999999999998754 13345688999999766443
No 224
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=34.62 E-value=17 Score=29.19 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=25.5
Q ss_pred cccHHHHHHHhhcCCCCcccCC--CCCCCC---CCCeecC
Q 020840 100 PISVAEYMEEVLTNPKAGFYIN--RDVFGA---EGDFITS 134 (320)
Q Consensus 100 pIsf~dfM~~aLY~P~~GYY~~--~~~~G~---~GDFiTS 134 (320)
-+-|++||..+|=+-+.=+-.+ +..+|+ +||=||.
T Consensus 43 IvGFDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItl 82 (88)
T KOG1774|consen 43 IVGFDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITL 82 (88)
T ss_pred EechHHhhhhhhcchhhccccccCCCccccEEEcCCcEEE
Confidence 4579999999998766555443 235786 7998885
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=34.42 E-value=1.5e+02 Score=32.21 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHcCC-CCcceEEEecCCchhHHHHHHHHHh-cCcCcc------------------------------
Q 020840 142 GEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGAS-KFKNFT------------------------------ 189 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~-~~p~~~------------------------------ 189 (320)
-|.||..++.. .|. .....+++-+||+||+.---..... ..|.+.
T Consensus 174 ~etlAaa~l~~---a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 174 KENLAAAILLR---SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred cHHHHHHHHHH---cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 46677766543 333 2235899999999999855433221 112110
Q ss_pred ----cceeEEEEecChhhHHHHHHhccc
Q 020840 190 ----ESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 190 ----~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
...+++-+|+++.+.+.-++++..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~ 278 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARR 278 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHH
Confidence 123689999999998888777754
No 226
>PRK10646 ADP-binding protein; Provisional
Probab=34.16 E-value=83 Score=27.80 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHcCCCCcceEE--EecCCchhHHHHHHHHHh
Q 020840 135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGAS 183 (320)
Q Consensus 135 pEIsp~FGe~IA~~i~~~w~~~g~p~~l~Iv--EiGaG~GtLa~DIL~~l~ 183 (320)
++=..-||+.||..+ .|..+.++ ++|||+=||++.|++.+-
T Consensus 11 ~~~t~~l~~~la~~l--------~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKAC--------DGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhC--------CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 444667788887654 22222222 899999999999999985
No 227
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=34.15 E-value=20 Score=34.02 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=40.4
Q ss_pred CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCC----CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecC
Q 020840 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQP----NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200 (320)
Q Consensus 125 ~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p----~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S 200 (320)
.|+..=|+-|++- |..++++ +.| ++.+++++|||.|.....+-..+.+ ++--|.|
T Consensus 85 lgrGsMFifSe~Q---F~klL~i---------~~p~w~~~~~~lLDlGAGdGeit~~m~p~fee---------vyATElS 143 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQ---FRKLLVI---------GGPAWGQEPVTLLDLGAGDGEITLRMAPTFEE---------VYATELS 143 (288)
T ss_pred cccCceEEecHHH---HHHHHhc---------CCCccCCCCeeEEeccCCCcchhhhhcchHHH---------HHHHHhh
Confidence 4667778888763 4444433 222 4679999999999876655433322 4446888
Q ss_pred hhhHHHHH
Q 020840 201 PTLQKLQH 208 (320)
Q Consensus 201 p~Lr~~Q~ 208 (320)
-.|+.+-+
T Consensus 144 ~tMr~rL~ 151 (288)
T KOG3987|consen 144 WTMRDRLK 151 (288)
T ss_pred HHHHHHHh
Confidence 88876443
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=33.31 E-value=1.1e+02 Score=28.91 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=29.1
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.-.|+=+||.+||-..+|-+..... -.++-||.||..
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~------G~VYaVEfs~r~ 110 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPD------GVVYAVEFSPRS 110 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTT------SEEEEEESSHHH
T ss_pred CCEEEEecccCCCccchhhhccCCC------CcEEEEEecchh
Confidence 3589999999999999998876432 247889999955
No 229
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=33.24 E-value=1.1e+02 Score=30.67 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=45.9
Q ss_pred CC-CCCCeecCCCh-hHHHHHHHHHHHHHHHHH------cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEE
Q 020840 125 FG-AEGDFITSPEV-SQMFGEMVGVWAMCLWEQ------MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHL 196 (320)
Q Consensus 125 ~G-~~GDFiTSpEI-sp~FGe~IA~~i~~~w~~------~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~i 196 (320)
.| ..|.|+++-+. +..|-+.- ..+..++.. .|...-...|++|+|.|+.+..||. .+|. +-+
T Consensus 135 ~G~~l~~~~~~~~~~~~~~~~sm-~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~---~fp~------ik~ 204 (342)
T KOG3178|consen 135 HGMMLGGYGGADERFSKDFNGSM-SFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS---KYPH------IKG 204 (342)
T ss_pred cchhhhhhcccccccHHHHHHHH-HHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH---hCCC------Cce
Confidence 47 57888888553 44443332 111222221 1222345899999999999999987 3443 456
Q ss_pred EecChhhHHHHHHhc
Q 020840 197 VECSPTLQKLQHHNL 211 (320)
Q Consensus 197 VE~Sp~Lr~~Q~e~L 211 (320)
||.-....-.+++.+
T Consensus 205 infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 205 INFDLPFVLAAAPYL 219 (342)
T ss_pred eecCHHHHHhhhhhh
Confidence 666666666666655
No 230
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=32.15 E-value=2e+02 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCcc-eEEEecCCch-hHHHHHHHHHhc-CcC
Q 020840 138 SQMFGEMVGVWAMCLWEQMGQPNRV-NLVELGPGRG-TLMADLLRGASK-FKN 187 (320)
Q Consensus 138 sp~FGe~IA~~i~~~w~~~g~p~~l-~IvEiGaG~G-tLa~DIL~~l~~-~p~ 187 (320)
++-+.+-+-..|....++.+...-+ -+-.+|+|+| -++.-|++.++. +|+
T Consensus 78 g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 78 GHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred chhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 4444555556666666666655333 4559999997 567777787873 554
No 231
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=30.53 E-value=61 Score=30.96 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=23.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
..+|+|+|+|+| ...++-++.- ..+|.+-+....+...+..
T Consensus 87 ~~~vlELGsGtg--lvG~~aa~~~------~~~v~ltD~~~~~~~L~~~ 127 (248)
T KOG2793|consen 87 YINVLELGSGTG--LVGILAALLL------GAEVVLTDLPKVVENLKFN 127 (248)
T ss_pred ceeEEEecCCcc--HHHHHHHHHh------cceeccCCchhhHHHHHHh
Confidence 467999999999 3445554421 1245555555544444444
No 232
>PHA01634 hypothetical protein
Probab=30.50 E-value=93 Score=27.53 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=33.5
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~ 213 (320)
-+|+.+||+-|.-|.-.+- + .+-.++.+|++|.|++.-++.++.
T Consensus 30 KtV~dIGA~iGdSaiYF~l--~------GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLL--R------GASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CEEEEecCCccchhhHHhh--c------CccEEEEeccCHHHHHHHHHHhhh
Confidence 4899999999986655432 1 223588999999999999887654
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=29.96 E-value=90 Score=32.16 Aligned_cols=40 Identities=28% Similarity=0.544 Sum_probs=32.3
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (320)
-.++=+|+|.|--++.+|+ +|.+ .++++||..|.+.+.-+
T Consensus 291 ~~vLvlGGGDGLAlRellk----yP~~---~qI~lVdLDP~miela~ 330 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK----YPQV---EQITLVDLDPRMIELAS 330 (508)
T ss_pred ceEEEEcCCchHHHHHHHh----CCCc---ceEEEEecCHHHHHHhh
Confidence 4788999999997776665 4644 47999999999998776
No 234
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=29.70 E-value=59 Score=30.18 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=54.4
Q ss_pred EEEEccCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCC-----------CCCC
Q 020840 62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG-----------AEGD 130 (320)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G-----------~~GD 130 (320)
..++|-+||.. ..-+ ... .+.++.+|.. -++=.++.-..|.++..-.|.+....| ..|+
T Consensus 116 vy~fDgPGf~~---~~~~---~~~-~~~~~~kI~~---~vp~~siVg~ll~~~~~~~vV~S~~~gi~QH~~~sW~v~~~~ 185 (224)
T PF11187_consen 116 VYSFDGPGFSE---EFLE---SPG-YQRIKDKIHN---YVPQSSIVGMLLEHPEPYTVVKSNAKGIMQHDPYSWQVEGGD 185 (224)
T ss_pred EEEeeCCCCCh---hhcc---cHh-HHHHhhhhEE---EcCCcceecccccCCCCeEEEECCCCChhhcCCeeEEEcCCc
Confidence 56788888876 1111 223 3456677764 377788888899998876665432222 4799
Q ss_pred eecCCCh---hHHHHHHHHHHHHH
Q 020840 131 FITSPEV---SQMFGEMVGVWAMC 151 (320)
Q Consensus 131 FiTSpEI---sp~FGe~IA~~i~~ 151 (320)
|+++.++ +.+|.++|..|+..
T Consensus 186 fv~~~~~t~~s~~~~~~~~~w~~~ 209 (224)
T PF11187_consen 186 FVYADGLTPESKFFDKTIKSWISS 209 (224)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHh
Confidence 9999776 67888888888864
No 235
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=35 Score=30.80 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (320)
Q Consensus 129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (320)
-.|-|+|+|..-.=++|-.- .|.-+.-.|.++|||.|-|+... . .+..-.+.=+++.|.--+.
T Consensus 24 EQY~T~p~iAasM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~-----s---m~~~e~vlGfDIdpeALEI 86 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAF-----S---MPKNESVLGFDIDPEALEI 86 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhh-------hccccCcchhhhcCchhhhHHHh-----h---cCCCceEEeeecCHHHHHH
Confidence 35779999865444443322 24223347999999999988321 1 1222245667888766543
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=28.99 E-value=45 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHcCCC---CcceEEEecCCchhHHH
Q 020840 142 GEMVGVWAMCLWEQMGQP---NRVNLVELGPGRGTLMA 176 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p---~~l~IvEiGaG~GtLa~ 176 (320)
|..+|+|+. ..| ...+|+|+|+|+|--+-
T Consensus 64 G~~lAR~i~------~~PetVrgkrVLd~gagsgLvaI 95 (218)
T COG3897 64 GQVLARYID------DHPETVRGKRVLDLGAGSGLVAI 95 (218)
T ss_pred hHHHHHHHh------cCccccccceeeecccccChHHH
Confidence 556777775 333 23589999999997554
No 237
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=28.06 E-value=1.2e+02 Score=26.18 Aligned_cols=18 Identities=44% Similarity=0.835 Sum_probs=16.7
Q ss_pred EecCCchhHHHHHHHHHh
Q 020840 166 ELGPGRGTLMADLLRGAS 183 (320)
Q Consensus 166 EiGaG~GtLa~DIL~~l~ 183 (320)
++|+|+-||++.+.+.+.
T Consensus 30 ~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 899999999999999874
No 238
>PRK10742 putative methyltransferase; Provisional
Probab=27.91 E-value=1.5e+02 Score=28.34 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=46.7
Q ss_pred CCeecCCCh-hHHHH----HHHHHHHHHHHHHcCCCC--cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840 129 GDFITSPEV-SQMFG----EMVGVWAMCLWEQMGQPN--RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (320)
Q Consensus 129 GDFiTSpEI-sp~FG----e~IA~~i~~~w~~~g~p~--~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (320)
-||++...- -..|| +.|++.+ |..+ ..+|+++=||.|..+.-++.. -.++++||.||
T Consensus 57 vDF~~~~~a~rR~~~~g~~~~l~kAv-------glk~g~~p~VLD~TAGlG~Da~~las~---------G~~V~~vEr~p 120 (250)
T PRK10742 57 VDFVGGAMAHRRKFGGGRGEAVAKAV-------GIKGDYLPDVVDATAGLGRDAFVLASV---------GCRVRMLERNP 120 (250)
T ss_pred EEccCchHHHHHHhcCCCccHHHHHh-------CCCCCCCCEEEECCCCccHHHHHHHHc---------CCEEEEEECCH
Confidence 488764322 24555 5555443 3222 238999999999988765432 23599999999
Q ss_pred hhHHHHHHhccc
Q 020840 202 TLQKLQHHNLKC 213 (320)
Q Consensus 202 ~Lr~~Q~e~L~~ 213 (320)
.+...-++.|..
T Consensus 121 ~vaalL~dgL~r 132 (250)
T PRK10742 121 VVAALLDDGLAR 132 (250)
T ss_pred HHHHHHHHHHHH
Confidence 999988888764
No 239
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=27.35 E-value=3.5e+02 Score=28.38 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=61.7
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC-CC------------CCC-CCCCCe
Q 020840 66 DRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI-NR------------DVF-GAEGDF 131 (320)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~-~~------------~~~-G~~GDF 131 (320)
=||..+-+|--++..-+...+.+.+.+.-++. | |+-++- +-|+.. +. .++ +..|||
T Consensus 48 yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~A-g-i~~~di--------e~~ahIITg~~~~~~Nl~~~v~~~~~~~gdf 117 (475)
T PRK10719 48 YRSPIYFTPLLKQGEIDEAAIKELIEEEYQKA-G-IAPESI--------DSGAVIITGETARKENAREVVMALSGSAGDF 117 (475)
T ss_pred EecCceecCCCCCccccHHHHHHHHHHHHHHc-C-CCHHHc--------cccEEEEEechhHHHHHHHHHHHhcccccce
Confidence 36666777888888888999999999999886 4 666663 234442 10 112 246999
Q ss_pred e--cC-CChhHHHH-HHHHHHHHHHHHHcCCCCcceEEEecCCchhHH
Q 020840 132 I--TS-PEVSQMFG-EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLM 175 (320)
Q Consensus 132 i--TS-pEIsp~FG-e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa 175 (320)
+ || +++-.++. .+-|..++.. +.. ...-+|++|+|+=.++
T Consensus 118 VVA~AG~~le~iva~~ASg~avLse--Eke--~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 118 VVATAGPDLESIIAGKGAGAQTLSE--ERN--TRVLNIDIGGGTANYA 161 (475)
T ss_pred eeeccCccHHHhhhHHHhhHHHhhh--hcc--CceEEEEeCCCceEEE
Confidence 9 66 88855443 3344444432 222 2368999999986544
No 240
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.32 E-value=96 Score=20.18 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhcCCcccHHHHHHHhh
Q 020840 83 ESELVKHLKGIIKFRGGPISVAEYMEEVL 111 (320)
Q Consensus 83 ~~~L~~~i~~~I~~~~GpIsf~dfM~~aL 111 (320)
+.++.+.|.+..+.. | +|.++||..++
T Consensus 7 ~~~~~~~l~~~a~~~-g-~s~s~~ir~ai 33 (39)
T PF01402_consen 7 PDELYERLDELAKEL-G-RSRSELIREAI 33 (39)
T ss_dssp EHHHHHHHHHHHHHH-T-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-C-cCHHHHHHHHH
Confidence 356777788888877 5 99999999987
No 241
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=27.15 E-value=1.2e+02 Score=26.10 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHcC--CC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840 150 MCLWEQMG--QP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (320)
Q Consensus 150 ~~~w~~~g--~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (320)
.+..++.+ .+ ...+++++||+.|-...-+++.. ..+.+++-|++.+.
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG------GPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST------TTEEEEEEEESSST
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc------cccceEEEEecccc
Confidence 34444445 23 45899999999999988877654 12346777887776
No 242
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=26.92 E-value=2.5e+02 Score=27.88 Aligned_cols=49 Identities=18% Similarity=0.044 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcc-eEEEecCCch-hHHHHHHHHHhc-CcC
Q 020840 139 QMFGEMVGVWAMCLWEQMGQPNRV-NLVELGPGRG-TLMADLLRGASK-FKN 187 (320)
Q Consensus 139 p~FGe~IA~~i~~~w~~~g~p~~l-~IvEiGaG~G-tLa~DIL~~l~~-~p~ 187 (320)
+-+.+.+-..+..+.+..+...-+ -+-.+|+|+| -++.-|++.++. +|+
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~ 120 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPK 120 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCc
Confidence 344555556666666666654333 4558999987 666777788874 553
No 243
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=26.76 E-value=55 Score=34.40 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCCeecCCChhHHHHHHHHHHHHHHHHHcCC---C-CcceEEEecCCchhHHHHHHHH
Q 020840 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ---P-NRVNLVELGPGRGTLMADLLRG 181 (320)
Q Consensus 127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~---p-~~l~IvEiGaG~GtLa~DIL~~ 181 (320)
..||.++=|-=+.+|-.-...|+.++-+-... . .--..+++|||.|+++..++..
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred ecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC
Confidence 35777766665556655555555333222221 1 2346789999999999998864
No 244
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=26.35 E-value=1e+02 Score=30.36 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=28.6
Q ss_pred eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (320)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~ 212 (320)
.|+|+=||.|++..-+-+.. -+++-||+++...+.-++.+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~---------~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---------KKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---------SEEEEEES-HHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhC---------CeEEEeeCCHHHHHHHHHHHH
Confidence 79999999999988653321 258899999998765555443
No 245
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=24.96 E-value=1.6e+02 Score=28.68 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
+.|-|.||--+.+-.......- -...+||||.|.++..++..- + -..++++.|-.|.+.-+.
T Consensus 52 dylkeeig~rlaDrvfD~kk~f-p~a~diGcs~G~v~rhl~~e~-----v---ekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSF-PTAFDIGCSLGAVKRHLRGEG-----V---EKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhC-cceeecccchhhhhHHHHhcc-----h---hheeeeecchHHHHHhhc
Confidence 6677777777766554443322 278999999999999876531 1 147889999998765443
No 246
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=24.54 E-value=1.1e+02 Score=30.83 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=25.2
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (320)
.-.|+++|||+|-|..--.++ -+-+++.||.|.-.
T Consensus 61 dK~VlDVGcGtGILS~F~akA--------GA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA--------GARKVYAVEASSIA 95 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh--------CcceEEEEechHHH
Confidence 348999999999765533332 13468999999876
No 247
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=24.44 E-value=38 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=5.5
Q ss_pred EEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (320)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (320)
||+|...|.-+.-|+..++.... .+++.||..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~----~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR----GKLYSVDPFPG 34 (106)
T ss_dssp ------------------------------EEEESS--
T ss_pred Ccccccccccccccccccccccc----CCEEEEECCCc
Confidence 69999999988888888764321 46899999985
No 248
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=24.44 E-value=1.1e+02 Score=31.26 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (320)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (320)
.-.++++|||+|.|..--..+ .+-+++-||.|.-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA--------GA~~vYAvEAS~M 211 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA--------GAKKVYAVEASEM 211 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh--------CcceEEEEehhHH
Confidence 347999999999765432221 1236888999964
No 249
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=1.8e+02 Score=29.17 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=43.0
Q ss_pred cCCChh-HHHHHHHHHH--HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840 133 TSPEVS-QMFGEMVGVW--AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (320)
Q Consensus 133 TSpEIs-p~FGe~IA~~--i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (320)
-+|+|. -.|..+.|+- +....++. .++.+||.+|||.-+|+..++.... ++.+.|+=||.++....
T Consensus 59 r~P~inRGy~~R~~aI~~~v~~Fl~~~--~~~~qivnLGcG~D~l~frL~s~~~-----~~~~~fievDfp~~~~r 127 (335)
T KOG2918|consen 59 RAPEINRGYWARTMAIRHAVRAFLEQT--DGKKQIVNLGAGFDTLYFRLLSSGE-----LDRVKFIEVDFPEVVER 127 (335)
T ss_pred CCceecchhhHHHHHHHHHHHHHHHhc--CCceEEEEcCCCccchhhhhhccCC-----CCcceEEEecCcHHHHH
Confidence 357774 3666665542 33444542 3568999999999999999987642 24455666666666544
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=23.09 E-value=3.1e+02 Score=29.91 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=57.7
Q ss_pred HHHHHHHHHHh-cCCcccHHHHHHHhhcCCCCcccCCC-----CCCCCCCCeecC--CChhHHHH---------------
Q 020840 86 LVKHLKGIIKF-RGGPISVAEYMEEVLTNPKAGFYINR-----DVFGAEGDFITS--PEVSQMFG--------------- 142 (320)
Q Consensus 86 L~~~i~~~I~~-~~GpIsf~dfM~~aLY~P~~GYY~~~-----~~~G~~GDFiTS--pEIsp~FG--------------- 142 (320)
|.+++++.-.. ..-++||.+|.+.|--+|. .|.+. +-||..+---|. |-++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~sl~eyL~~vk~~p~--~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yG 80 (644)
T PRK15455 3 IFDHYQQRYEAAKEEEFSLQEYLELCKQDPS--AYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYG 80 (644)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHhcChH--HHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccC
Confidence 34444444333 2256899999999999986 56542 235654433332 44555555
Q ss_pred --HH---HHHHHHHHHHHcCCCCcceEE---EecCCchhHHHHHHHHHhcCc
Q 020840 143 --EM---VGVWAMCLWEQMGQPNRVNLV---ELGPGRGTLMADLLRGASKFK 186 (320)
Q Consensus 143 --e~---IA~~i~~~w~~~g~p~~l~Iv---EiGaG~GtLa~DIL~~l~~~p 186 (320)
+. |..++....+.++...+ .|+ .-|.|.=+|+.-|-+.+.++|
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~-IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQ-ILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCc-eEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 22 23344444455554432 333 557788899999999988775
No 251
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=21.81 E-value=1.1e+02 Score=30.36 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=23.6
Q ss_pred CCcceEEE--ecCCchhHHHHHHHHHh--cCcCc
Q 020840 159 PNRVNLVE--LGPGRGTLMADLLRGAS--KFKNF 188 (320)
Q Consensus 159 p~~l~IvE--iGaG~GtLa~DIL~~l~--~~p~~ 188 (320)
-.++.+|| ||+|.|+||..|.+.|- .+|++
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~ 103 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEF 103 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccc
Confidence 35567776 99999999999999873 57754
No 252
>PRK08329 threonine synthase; Validated
Probab=21.70 E-value=2.9e+02 Score=27.04 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=41.2
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC---cCcccceeEEEEecCh
Q 020840 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF---KNFTESLHIHLVECSP 201 (320)
Q Consensus 131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~---p~~~~~l~y~iVE~Sp 201 (320)
|+..+..+|++-+--.--..+.|++++.| ..|=++.|+|.++..|...++.. ..+-...+++.||...
T Consensus 177 ~~~~~~~np~~~eG~~t~~~Ei~eql~~p---D~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g 247 (347)
T PRK08329 177 PYVSHWLNPYFLEGTKTIAYEIYEQIGVP---DYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEG 247 (347)
T ss_pred eeccCCCCchhhccchhHHHHHHHHcCCC---CEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Confidence 44344334444333233334567777754 44556889999999999998753 1222335788898864
No 253
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=21.42 E-value=4.4e+02 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHH
Q 020840 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177 (320)
Q Consensus 142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~D 177 (320)
=|.||.-|+.+ .|....-.+++-=||+||++--
T Consensus 176 ketLAaAil~l---agw~~~~pl~DPmCGSGTi~IE 208 (381)
T COG0116 176 KETLAAAILLL---AGWKPDEPLLDPMCGSGTILIE 208 (381)
T ss_pred hHHHHHHHHHH---cCCCCCCccccCCCCccHHHHH
Confidence 56777766543 3443334799999999998743
No 254
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=21.30 E-value=3.7e+02 Score=24.41 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=29.7
Q ss_pred CcceEEEecCCchhHHHHHHHHHhc-CcCccc-ceeEEEEecChhhHHHHHH
Q 020840 160 NRVNLVELGPGRGTLMADLLRGASK-FKNFTE-SLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~~~-~l~y~iVE~Sp~Lr~~Q~e 209 (320)
.+++|.-.||++|.=+--|.-.+.. .+.... .+++.-.|+|+...+.-++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 6799999999999754444333322 122222 5789999999987655444
No 255
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=21.30 E-value=7.5e+02 Score=23.92 Aligned_cols=117 Identities=7% Similarity=0.053 Sum_probs=67.4
Q ss_pred CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcC
Q 020840 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157 (320)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~---~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g 157 (320)
.+...|...|..+++.. |-=++++|.+....++....-.. .--+| .-.|+==|+.-..+.+ .+ ...
T Consensus 45 ~k~~~l~~rl~~r~~~~-g~~s~~~y~~~L~~~~~~~e~~~li~~ltin-eT~FFRd~~~f~~L~~----~~----~~~- 113 (287)
T PRK10611 45 HKREMVYNRLVRRLRSL-GLNDFGQYLALLESNQNSAEWQAFINALTTN-LTAFFREAHHFPILAE----HA----RRR- 113 (287)
T ss_pred chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHhhCC-CCCccCCcHHHHHHHH----HH----Hhc-
Confidence 45678889999999987 66689999988887642111110 00122 2223322222223322 22 111
Q ss_pred CCCcceEEEecCCchhHHHHHHHHHhc-CcCcccceeEEEEecChhhHHHHHH
Q 020840 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHH 209 (320)
Q Consensus 158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~~~~l~y~iVE~Sp~Lr~~Q~e 209 (320)
..+++|.-.||.+|.=+--|.-.+.+ .+..-..++++-+|+|+..-+.-++
T Consensus 114 -~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 114 -SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred -CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 23599999999999755555444432 1221225789999999876554443
No 256
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=20.61 E-value=5.8e+02 Score=23.06 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-cCcccceeEEEEec
Q 020840 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVEC 199 (320)
Q Consensus 151 ~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~ 199 (320)
+.+++++.. ....|=++.|+|.++..+..+++.. | ..+++.||.
T Consensus 144 Ei~~q~~~~-~~d~ivvp~GtGg~~~G~~~~~~~~~~----~~~ii~v~~ 188 (244)
T cd00640 144 EILEQLGGQ-KPDAVVVPVGGGGNIAGIARALKELLP----NVKVIGVEP 188 (244)
T ss_pred HHHHHcCCC-CCCEEEEecCccHHHHHHHHHHHHhCC----CCEEEEEee
Confidence 445555541 2356678889999999999999753 3 346666665
No 257
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=7.6e+02 Score=23.59 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=36.4
Q ss_pred ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccc
Q 020840 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD 215 (320)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~ 215 (320)
+..+++|.|+|.|..-+-+.+..- .- ..+=||--|.|.+.-++.|..+.
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~--g~---~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGAT--GG---NVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCC--Cc---cccchhhhHHHHHHHHHHHHhhc
Confidence 689999999999988776665321 11 12778999999988888886543
No 258
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=20.05 E-value=1.1e+02 Score=29.42 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHHHHHHH-cCCCCcceEEEecCCchhHHHHHHHH
Q 020840 135 PEVSQMFGEMVGVWAMCLWEQ-MGQPNRVNLVELGPGRGTLMADLLRG 181 (320)
Q Consensus 135 pEIsp~FGe~IA~~i~~~w~~-~g~p~~l~IvEiGaG~GtLa~DIL~~ 181 (320)
+|-.+.|+-+|.. +.+..-. .....+.+|+==|||-|+||.+|-..
T Consensus 31 ~ER~~~~~~I~~~-L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 31 EERDPCYSPILDE-LESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred HHHHHHHHHHHHH-HHHhhcccccCCCccEEEEcCCCcchHHHHHhhc
Confidence 4667777766543 2222211 11235689999999999999999653
No 259
>PRK06450 threonine synthase; Validated
Probab=20.00 E-value=4.1e+02 Score=26.07 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=43.8
Q ss_pred eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-c-Ccccc-eeEEEEecCh
Q 020840 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-K-NFTES-LHIHLVECSP 201 (320)
Q Consensus 131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p-~~~~~-l~y~iVE~Sp 201 (320)
|+-.+...|.+=+--.--..++|++++.. ....|=+..|+|.++..|-+.+++. + .+.++ .+++.||...
T Consensus 166 ~~~~~~~np~~ieG~kTia~EI~eql~~~-~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g 238 (338)
T PRK06450 166 YYASHVLQPQFRDGIRTLAYEIAKDLDWK-IPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQ 238 (338)
T ss_pred EeccCCCCccHHHHHHHHHHHHHHHcCCC-CCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCC
Confidence 44444445555554444445678888721 1256667888999999999998753 1 22233 3789998743
Done!