BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020843
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
Containing Protein 7
Length = 153
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 142 AASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD 201
+S D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+ ++F+ LNRD
Sbjct: 4 GSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRD 63
Query: 202 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261
W+NEAV I +FIFWQVY D+ EG++ +YKL P V ++DP TGQK+ W +
Sbjct: 64 VWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQL 122
Query: 262 QPESLLEDLVPFM 274
S L+ + F+
Sbjct: 123 DVSSFLDQVTGFL 135
>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
Fam100b
Length = 66
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48
Q M++ F+ +A G A+ A Q LQA W+ + A+ F+
Sbjct: 18 QVMINQFV-LAAGCAADQAKQLLQAAHWQFETALSTFF 54
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 93 VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
+VR L DD + A G+ LH SL+ RN M P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 259 GMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKGKLQLL 308
GMV EDL+ F G ++S + GSS PQ+KN L+L+
Sbjct: 245 GMVHLSRFAEDLIFFNTG--EAGFVELSDRVTSGSSLMPQKKNPDALELI 292
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 16 SFLEIAVGQTAE-TAVQFLQATSWKLDEAIQLF--YVGNESGAIASASRSPAEEIANPGP 72
+F E+ ++A T + + S LD Q + Y GN GA +S I NPG
Sbjct: 102 TFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGS 161
Query: 73 EE-NSVTAGQEIGDEVRAPLPVVR-----DTLYDDAMFYAGSGARYPLH 115
EE T EIG + P D Y+DA+ YA ++ +H
Sbjct: 162 EEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAV-YAEDSYQFSIH 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,460,867
Number of Sequences: 62578
Number of extensions: 397614
Number of successful extensions: 685
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)