BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020843
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2
Length = 489
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 18/247 (7%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L + + R P S FR+F E
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILVEPEPLFGAPKRRRPAR--SIFDGFRDFQTET 118
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
R E E D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 119 IR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 175
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250
++F+ LNRD W+NEAV I +FIFWQVY D+ EG++ +YKL P V ++DP T
Sbjct: 176 QDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRT 235
Query: 251 GQKMRSW 257
GQK+ W
Sbjct: 236 GQKLVEW 242
>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2
Length = 489
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 124/247 (50%), Gaps = 18/247 (7%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L + + R P S FR+F E
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILVEPEPLFGAPKRRRPAR--SIFDGFRDFQTET 118
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
R E E D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 119 IR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 175
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250
++F+ LNRD W+NEAV I +FIFWQVY D+ EG++ +YKL P V ++DP T
Sbjct: 176 QDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRT 235
Query: 251 GQKMRSW 257
GQK+ W
Sbjct: 236 GQKLVEW 242
>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2
Length = 467
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP 70
+ ++ F I G + L+A + L+ A+ +F G G IA + + ++
Sbjct: 14 KGLIQQFTAI-TGASESVGKHMLEACNNNLEMAVTMFLDG---GGIAEEPSTSSASVSTV 69
Query: 71 GPEENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEM 130
P +EVRAP+P ++ L EP L R ++E+
Sbjct: 70 RPHTE---------EEVRAPIPQKQEILV----------------EPEPLFGVRQ-EQEL 103
Query: 131 KRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST 190
+ G D LA L+RPP LM GSFE AK+ +Q+KWL++N+Q+
Sbjct: 104 RNGGA----------IDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNV 153
Query: 191 KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250
++F+ LNRD W+NEAV I +FIFWQVY D+ EG++ +YKL P V ++DP T
Sbjct: 154 QDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRT 213
Query: 251 GQKMRSW 257
GQK+ W
Sbjct: 214 GQKLVEW 220
>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum
GN=ubxd7 PE=4 SV=1
Length = 503
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 12/262 (4%)
Query: 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANPGP 72
++S+FL I + A L+ +W ++ ++ F+ N+ + + S
Sbjct: 6 ILSNFLSITGCDDSSLATTILENNNWDVERSVDFFFTMNDPSNVKPTTSSKKTSSPPTAS 65
Query: 73 EENSVTAGQEIGDEVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKR 132
++ + DE R P+P D L D +Y + Y + + AFR+F++E
Sbjct: 66 SSSASSEFDYNEDEFRDPIPQKMDKLVD--HYYQPTQRSYQ-KQTNVFEAFRDFEKER-- 120
Query: 133 PGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 192
G+ + + A + +L+ L++PP ++ G+F++ K A + ++LVN+Q +E
Sbjct: 121 -GINQDK------ATEKQKSLSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQE 173
Query: 193 FSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252
F LNRDTW+N+ + + I NF+FWQV EGK Y + P + ++DP TGQ
Sbjct: 174 FDCQKLNRDTWSNKDLKELIGENFVFWQVNSANPEGKWFTQIYPVFKFPYIAIIDPRTGQ 233
Query: 253 KMRSWCGMVQPESLLEDLVPFM 274
K++ G + E + + LV F+
Sbjct: 234 KLQDMTGFIDAEEMAQYLVTFL 255
>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1
Length = 427
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 29/299 (9%)
Query: 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIA 68
D+ S+V++F I T E A ++L L AI LF+ ESG + S E +
Sbjct: 4 DEASLVANFCAI-TNSTPEKAQEYLSVADGDLSTAITLFF---ESGGVTDVQSSYIEAPS 59
Query: 69 NPGPEENSVTAGQEIGDEVRAPLPVVRDTLYDD-AMFYAGSG--------ARYPLHEPSS 119
P E E+RAP+ R+ L D A AG+ +P
Sbjct: 60 QTEPVE-----------EIRAPIAPTREVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQ 108
Query: 120 LIAFRNFDE---EMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAA 176
FD+ ++ P + S + S LA L+RPP+ ++ N S ++A+ A
Sbjct: 109 RRRMGIFDQSPSQIPFPSSNTEDSSEESDSSSRASRLAKLFRPPYDIISNLSLDEARIEA 168
Query: 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 236
S Q +W+LVNLQ++ F +LNRD W +E+V + I +F+F Q+ DD G + +Y
Sbjct: 169 SSQKRWILVNLQTSTSFECQVLNRDLWKDESVKEVIRAHFLFLQLLDDEEPGMEFKRFYP 228
Query: 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSST 295
+ S P + ++DP TG++++ W P + L F++G ++ + K P G+ +
Sbjct: 229 VRSTPHIAILDPRTGERVKEWSKSFTPADFVIALNDFLEGCTLDETS--GRKNPLGAKS 285
>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1
Length = 500
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 146/365 (40%), Gaps = 72/365 (19%)
Query: 14 VSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANP-GP 72
V F+ I A A QF++ L+ AI LF+ N A+ S++ +P + P P
Sbjct: 6 VDEFMAITGADDAAIATQFIEMADGNLNTAISLFF-ENGGAALLSSNNTPTPSNSTPMAP 64
Query: 73 EENSVTAGQEIGDE---------------VRAPLPVVRDTLYDDAMF---YAGSGARY-P 113
A ++ + VR P + L + + F Y G G R+ P
Sbjct: 65 TSVDSDADAQLAERLQREAYQQQQPDQDYVRPPDEARHEVLTETSGFPISYGGIGGRFEP 124
Query: 114 LHE---------PSSLIAFRNFD--------------------------EEMKRPGVWES 138
LH P S+ R D E ++ P +
Sbjct: 125 LHRVNDMFDEGRPESIFNQRLDDTNTNTYINDNSSDSLDSEEENDDDEYEYVEEPVIELD 184
Query: 139 EQGAAS---------TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQS 189
E G S LA L+RPPF +M + AK A + KW+++N+Q
Sbjct: 185 EDGNIKEYTKLVRKPKTISKEQKLALLFRPPFSIMSKLDLDAAKQKARAKQKWIMINIQD 244
Query: 190 TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL---DSIPVVLVV 246
+ F LNRD W++ V I NF+F Q ++ + +Y L D +P + ++
Sbjct: 245 SGIFQCQALNRDLWSSRPVKTIIKENFVFLQYQYESRNAQPYLQFYHLNNKDDLPHIAIL 304
Query: 247 DPITGQKMRSWCGMVQ-PESLLEDLVPFMDG---GPREQHAKVSHKRPRGSSTTPQQKNK 302
DPITG++++ W +V PE + ++ F+ P+ + V+ P+ TT ++ +
Sbjct: 305 DPITGERVKQWNRVVPIPEQFISEINEFLASFSLDPKVPNPTVNEPLPKVDPTTLTEEQQ 364
Query: 303 GKLQL 307
+L +
Sbjct: 365 MELAI 369
>sp|Q96CS3|FAF2_HUMAN FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2
Length = 445
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A + A + ++LLV L S R+T V I+T +FW
Sbjct: 153 VFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLFWACS 212
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMDGG 277
+ EG +V + ++ P + ++ + ++M G++QP+ L+ L MD
Sbjct: 213 TNKPEGYRVSQALRENTYPFLAMI-MLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 269
>sp|Q2HJD0|FAF2_BOVIN FAS-associated factor 2 OS=Bos taurus GN=FAF2 PE=2 SV=1
Length = 445
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 159 PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIF 218
P F+L G++ +A + A + ++LLV L S R+T V I+T +F
Sbjct: 152 PVFYL---GTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISLINTRMLF 208
Query: 219 WQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMD 275
W + EG +V + ++ P + ++ + ++M G++QP+ L+ L MD
Sbjct: 209 WACSTNKPEGYRVSQALRENTYPFLAMI-MLKDRRMTVVGRLEGLIQPDDLINQLTFIMD 267
Query: 276 GG 277
Sbjct: 268 AN 269
>sp|Q3TDN2|FAF2_MOUSE FAS-associated factor 2 OS=Mus musculus GN=Faf2 PE=2 SV=2
Length = 445
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A + A + ++LLV L S R+ V I++ +FW
Sbjct: 153 VFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNALCAPEVISLINSRMLFWACS 212
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMDGG 277
+ EG +V + ++ P + ++ + ++M G++QP+ L+ L MD
Sbjct: 213 TNKPEGYRVSQALRENTYPFLAMI-MLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 269
>sp|Q5BK32|FAF2_RAT FAS-associated factor 2 OS=Rattus norvegicus GN=Faf2 PE=2 SV=1
Length = 346
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A A + ++LLV L S R+ V I++ +FW
Sbjct: 54 VFYQGTYSQALSDAKRELRFLLVYLHGDDHQDSDEFCRNALCAPEVISLINSRMLFWACS 113
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMDGG 277
+ EG +V + ++ P + ++ + ++M G++QP+ L+ L MD
Sbjct: 114 TNKPEGYRVSQALRENTYPFLAMI-MLKDRRMTVVGRLEGLIQPDDLINQLTFIMDAN 170
>sp|Q6GQ69|FAF2B_XENLA FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1
Length = 445
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A + A + ++LLV L S R+T V+ I++ +FW
Sbjct: 153 VFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSDDFCRNTLCTSEVTHFINSRMLFWACS 212
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMDGG 277
+ EG +V + P + ++ + ++M G++QP+ L+ L ++
Sbjct: 213 SNKPEGFRVSQALHESTYPFLAMI-MLKDRRMTVVGRLEGLIQPQDLINQLTFIIEAN 269
>sp|Q6AZH6|FAF2A_XENLA FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1
Length = 445
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A + A + ++LLV L S R+T V+ I++ +FW
Sbjct: 153 VFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSDDFCRNTLCTPEVTHFINSRMLFWACS 212
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDL 270
+ EG +V + ++ P + ++ + ++M G++QP+ L+ L
Sbjct: 213 TNKPEGFRVSQALRENTYPFLGMIM-LKDRRMTVVGRLEGLMQPQDLINQL 262
>sp|Q28BP9|FAF2_XENTR FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1
Length = 445
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 222
+ + G++ +A + A + ++LLV L S R+T V+ +++ +FW
Sbjct: 153 VFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSDDFCRNTLCIPEVTNFLNSRMLFWACS 212
Query: 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDL 270
+ EG +V + ++ P + ++ + ++M G++QP+ L+ L
Sbjct: 213 TNKPEGFRVSQALRENTYPFLAMI-MLKDRRMTVVGRLEGLIQPQDLINQL 262
>sp|C5CAR1|SECA_MICLC Protein translocase subunit SecA OS=Micrococcus luteus (strain ATCC
4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 /
NCTC 2665 / VKM Ac-2230) GN=secA PE=3 SV=1
Length = 911
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDE 42
S+L D Q V F+E AVG + A + QAT W LD+
Sbjct: 662 SILEGEDLQDRVRRFVEDAVGNIVDAATEEGQATDWDLDQ 701
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNF---IFWQVYDDTSEGKKV 231
+LV L+S + ++ H++N DTW N + + I T+ FW++ D G +
Sbjct: 15 MLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTI 66
>sp|Q9JL58|KCNK9_CAVPO Potassium channel subfamily K member 9 OS=Cavia porcellus GN=KCNK9
PE=1 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 211 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW-----------CG 259
T+ T + T GK C +Y + IP+ LV+ G++M ++ CG
Sbjct: 89 TVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCG 148
Query: 260 MVQPESLLEDLV 271
M E +E++V
Sbjct: 149 MRNTEVSMENMV 160
>sp|Q9ES08|KCNK9_RAT Potassium channel subfamily K member 9 OS=Rattus norvegicus
GN=Kcnk9 PE=1 SV=2
Length = 396
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 211 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW-----------CG 259
T+ T + T GK C +Y + IP+ LV+ G++M ++ CG
Sbjct: 89 TVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCG 148
Query: 260 MVQPESLLEDLV 271
M E +E++V
Sbjct: 149 MRNTEVSMENMV 160
>sp|Q3LS21|KCNK9_MOUSE Potassium channel subfamily K member 9 OS=Mus musculus GN=Kcnk9
PE=2 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 211 TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW-----------CG 259
T+ T + T GK C +Y + IP+ LV+ G++M ++ CG
Sbjct: 89 TVITTIGYGHAAPGTDAGKAFCMFYAVLGIPLTLVMFQSLGERMNTFVRYLLKRIKKCCG 148
Query: 260 MVQPESLLEDLV 271
M E +E++V
Sbjct: 149 MRNTEVSMENMV 160
>sp|Q08743|YO292_YEAST Vacuolar membrane protein YOR292C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOR292C PE=1 SV=1
Length = 309
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 181 KWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD 238
WLL+ + T +F+SH R +AN AV T+ TN + + + D ++ Y +D
Sbjct: 57 HWLLLVIWVTSLWKFTSHY--RQLYANSAVFATLCTNILLFGISDILAQSIACFYSYHVD 114
Query: 239 SIPVVL 244
IP +L
Sbjct: 115 PIPQIL 120
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 209 SQTISTNFIFWQVYDDTSEGKKVCTYYK-LDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267
S+ I TN+ Q +T+E C++ K + + P L+ +PI KM +CG+ + E+
Sbjct: 2151 SENILTNYEN-QSRVETNERANECSHSKNIQNFPSDLIENPIMKSKMSKFCGVNETEN-- 2207
Query: 268 EDLV----PFMDGGPR----EQHAKVSHKRPRGSSTTPQQKNKGKLQ 306
ED P D PR H K+ H + + T + N K +
Sbjct: 2208 EDNTNRDSPIFDYSPRLSALLSHDKLMHSQGSFNDTHTPESNGNKCE 2254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,772,195
Number of Sequences: 539616
Number of extensions: 4969555
Number of successful extensions: 8927
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8903
Number of HSP's gapped (non-prelim): 30
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)