Query 020843
Match_columns 320
No_of_seqs 258 out of 674
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00594 UAS UAS domain. 100.0 1.9E-28 4.1E-33 203.8 12.4 116 156-271 2-122 (122)
2 cd02958 UAS UAS family; UAS is 100.0 7.1E-28 1.5E-32 197.3 14.0 113 164-276 1-113 (114)
3 KOG1364 Predicted ubiquitin re 100.0 3.1E-28 6.7E-33 229.8 13.3 194 8-283 4-198 (356)
4 cd02991 UAS_ETEA UAS family, E 99.9 1.3E-26 2.8E-31 191.8 14.7 114 164-277 1-116 (116)
5 cd02990 UAS_FAF1 UAS family, F 99.9 9E-23 2E-27 172.7 14.0 114 164-277 1-136 (136)
6 PF13899 Thioredoxin_7: Thiore 99.7 1.1E-16 2.4E-21 123.6 10.1 79 167-248 4-82 (82)
7 cd02955 SSP411 TRX domain, SSP 99.6 4.1E-15 8.9E-20 124.4 12.3 89 170-259 5-99 (124)
8 cd02960 AGR Anterior Gradient 99.6 1.3E-15 2.8E-20 128.2 8.7 90 167-260 10-99 (130)
9 cd02951 SoxW SoxW family; SoxW 99.6 9.7E-15 2.1E-19 120.8 13.0 108 169-276 2-121 (125)
10 cd02953 DsbDgamma DsbD gamma f 99.5 1.1E-13 2.3E-18 110.9 9.8 100 171-270 2-103 (104)
11 PF03190 Thioredox_DsbH: Prote 99.4 6.6E-13 1.4E-17 115.7 10.4 114 158-276 17-143 (163)
12 PF13098 Thioredoxin_2: Thiore 99.4 4.5E-13 9.8E-18 108.1 4.8 94 176-270 1-112 (112)
13 PF14555 UBA_4: UBA-like domai 99.4 7.2E-13 1.6E-17 90.8 4.5 41 11-52 1-41 (43)
14 COG2143 Thioredoxin-related pr 99.3 7.8E-12 1.7E-16 107.2 10.7 109 167-276 29-151 (182)
15 PRK00293 dipZ thiol:disulfide 99.3 6E-12 1.3E-16 129.7 11.7 105 167-273 461-569 (571)
16 cd02959 ERp19 Endoplasmic reti 99.3 2.4E-12 5.3E-17 106.4 7.0 104 167-275 6-114 (117)
17 cd02950 TxlA TRX-like protein 99.3 9.5E-11 2.1E-15 100.0 14.3 102 174-279 14-115 (142)
18 cd02985 TRX_CDSP32 TRX family, 99.0 7.1E-09 1.5E-13 83.3 11.6 93 168-271 5-100 (103)
19 cd02956 ybbN ybbN protein fami 99.0 5.2E-09 1.1E-13 82.1 10.4 94 168-270 2-95 (96)
20 COG4232 Thiol:disulfide interc 98.9 3E-09 6.6E-14 107.9 9.9 101 172-274 464-568 (569)
21 KOG2507 Ubiquitin regulatory p 98.9 9E-09 1.9E-13 100.3 11.2 110 164-275 3-112 (506)
22 cd02997 PDI_a_PDIR PDIa family 98.9 1.5E-08 3.2E-13 80.0 10.3 94 167-269 8-103 (104)
23 PRK10996 thioredoxin 2; Provis 98.9 2.6E-08 5.6E-13 84.6 12.3 91 176-273 48-138 (139)
24 KOG0910 Thioredoxin-like prote 98.9 1.3E-08 2.8E-13 87.3 10.2 102 167-275 48-149 (150)
25 PF00085 Thioredoxin: Thioredo 98.9 3.4E-08 7.3E-13 77.4 11.2 97 166-272 6-102 (103)
26 cd02949 TRX_NTR TRX domain, no 98.9 4.6E-08 1E-12 77.4 11.9 96 167-270 1-96 (97)
27 PHA02278 thioredoxin-like prot 98.8 5.5E-08 1.2E-12 78.8 11.4 83 178-268 12-99 (103)
28 cd02963 TRX_DnaJ TRX domain, D 98.8 4.7E-08 1E-12 79.6 11.0 100 165-271 7-109 (111)
29 cd02993 PDI_a_APS_reductase PD 98.8 3.3E-08 7.1E-13 80.0 9.7 96 167-268 9-107 (109)
30 cd02948 TRX_NDPK TRX domain, T 98.8 8.8E-08 1.9E-12 76.7 11.7 88 176-272 13-101 (102)
31 KOG0907 Thioredoxin [Posttrans 98.8 6.3E-08 1.4E-12 79.0 10.6 86 166-261 7-94 (106)
32 KOG1363 Predicted regulator of 98.8 9.4E-09 2E-13 103.0 6.6 99 150-248 148-252 (460)
33 cd03002 PDI_a_MPD1_like PDI fa 98.8 6E-08 1.3E-12 77.5 9.9 99 166-270 7-108 (109)
34 TIGR00385 dsbE periplasmic pro 98.8 7.3E-08 1.6E-12 84.4 10.9 93 176-275 59-172 (173)
35 cd02984 TRX_PICOT TRX domain, 98.8 8.4E-08 1.8E-12 75.0 10.0 93 168-270 4-96 (97)
36 PLN00410 U5 snRNP protein, DIM 98.7 1.3E-07 2.8E-12 81.0 10.9 100 167-277 12-123 (142)
37 cd03004 PDI_a_ERdj5_C PDIa fam 98.7 1.3E-07 2.7E-12 75.3 10.1 93 167-268 9-102 (104)
38 cd03006 PDI_a_EFP1_N PDIa fami 98.7 1.3E-07 2.8E-12 77.9 10.0 97 164-268 14-111 (113)
39 TIGR01068 thioredoxin thioredo 98.7 3.4E-07 7.4E-12 71.2 11.9 89 178-273 12-100 (101)
40 COG1331 Highly conserved prote 98.7 4.7E-08 1E-12 100.8 8.2 84 170-254 33-122 (667)
41 cd02961 PDI_a_family Protein D 98.7 2E-07 4.3E-12 71.9 9.5 92 172-269 7-100 (101)
42 PRK09381 trxA thioredoxin; Pro 98.7 3.9E-07 8.4E-12 73.2 11.5 97 168-274 12-108 (109)
43 cd03000 PDI_a_TMX3 PDIa family 98.7 2.5E-07 5.3E-12 74.0 10.2 96 168-272 4-102 (104)
44 cd02954 DIM1 Dim1 family; Dim1 98.6 6.2E-07 1.3E-11 74.1 12.4 85 179-273 13-110 (114)
45 TIGR01126 pdi_dom protein disu 98.6 3.6E-07 7.8E-12 71.5 10.4 95 167-272 4-100 (102)
46 cd02999 PDI_a_ERp44_like PDIa 98.6 2E-07 4.3E-12 74.7 8.9 84 177-268 15-98 (100)
47 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 4.4E-07 9.5E-12 72.0 10.0 91 167-268 9-99 (101)
48 cd02996 PDI_a_ERp44 PDIa famil 98.6 5.3E-07 1.1E-11 72.5 10.5 93 166-269 8-107 (108)
49 cd02947 TRX_family TRX family; 98.6 6.6E-07 1.4E-11 67.4 10.3 86 175-270 5-92 (93)
50 cd02986 DLP Dim1 family, Dim1- 98.6 5.5E-07 1.2E-11 74.3 10.4 95 167-273 3-110 (114)
51 PTZ00051 thioredoxin; Provisio 98.6 7.6E-07 1.6E-11 69.8 10.8 84 171-265 9-94 (98)
52 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 2.4E-07 5.1E-12 75.6 7.5 94 173-270 13-122 (123)
53 cd02994 PDI_a_TMX PDIa family, 98.5 1E-06 2.2E-11 69.6 10.5 92 166-271 8-100 (101)
54 PRK15412 thiol:disulfide inter 98.5 9.1E-07 2E-11 78.4 10.9 93 178-277 66-179 (185)
55 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 7.3E-07 1.6E-11 70.1 9.1 91 167-268 8-102 (104)
56 cd02998 PDI_a_ERp38 PDIa famil 98.5 5.7E-07 1.2E-11 70.7 8.4 93 168-268 9-103 (105)
57 cd03005 PDI_a_ERp46 PDIa famil 98.5 1.6E-06 3.6E-11 68.1 10.8 90 167-268 8-100 (102)
58 cd02987 Phd_like_Phd Phosducin 98.5 1.6E-06 3.5E-11 76.6 11.8 98 167-276 71-173 (175)
59 TIGR02738 TrbB type-F conjugat 98.4 2E-06 4.3E-11 74.6 10.1 90 178-273 48-152 (153)
60 TIGR02740 TraF-like TraF-like 98.4 4.3E-06 9.3E-11 78.9 12.9 94 176-275 162-265 (271)
61 cd03001 PDI_a_P5 PDIa family, 98.4 4E-06 8.7E-11 66.0 10.8 87 177-269 15-101 (103)
62 cd02989 Phd_like_TxnDC9 Phosdu 98.4 3.2E-06 6.8E-11 69.3 10.5 77 174-260 16-94 (113)
63 cd02957 Phd_like Phosducin (Ph 98.4 1.9E-06 4.2E-11 70.1 9.2 81 168-260 13-95 (113)
64 PTZ00443 Thioredoxin domain-co 98.4 4.3E-06 9.3E-11 76.9 12.2 104 164-274 35-139 (224)
65 cd03065 PDI_b_Calsequestrin_N 98.4 4.7E-06 1E-10 69.4 11.2 100 166-275 16-120 (120)
66 TIGR01295 PedC_BrcD bacterioci 98.3 8.5E-06 1.8E-10 67.8 11.9 92 168-268 12-118 (122)
67 cd03010 TlpA_like_DsbE TlpA-li 98.3 2E-06 4.4E-11 70.8 8.1 85 174-265 19-125 (127)
68 PRK03147 thiol-disulfide oxido 98.3 7.6E-06 1.6E-10 70.6 11.6 92 178-272 59-170 (173)
69 cd02975 PfPDO_like_N Pyrococcu 98.3 9.9E-06 2.1E-10 66.3 11.2 91 175-275 17-111 (113)
70 cd02965 HyaE HyaE family; HyaE 98.3 2.1E-05 4.5E-10 64.7 12.2 100 151-267 4-109 (111)
71 cd03009 TryX_like_TryX_NRX Try 98.3 6.1E-06 1.3E-10 68.4 9.2 72 178-256 16-115 (131)
72 cd02962 TMX2 TMX2 family; comp 98.2 1.1E-05 2.4E-10 69.9 10.4 81 167-259 36-126 (152)
73 TIGR00424 APS_reduc 5'-adenyly 98.2 1E-05 2.2E-10 81.6 11.2 114 153-271 344-460 (463)
74 cd02966 TlpA_like_family TlpA- 98.2 1.4E-05 3E-10 62.5 9.4 78 175-259 14-116 (116)
75 cd02992 PDI_a_QSOX PDIa family 98.2 1.5E-05 3.3E-10 65.2 9.4 76 167-248 9-87 (114)
76 TIGR01130 ER_PDI_fam protein d 98.1 1.5E-05 3.3E-10 78.8 10.2 98 167-275 9-110 (462)
77 cd02952 TRP14_like Human TRX-r 98.1 1.9E-05 4.2E-10 65.7 9.1 68 179-254 20-103 (119)
78 PTZ00102 disulphide isomerase; 98.1 1.9E-05 4E-10 79.1 10.4 98 167-276 40-140 (477)
79 PRK14018 trifunctional thiored 98.1 2E-05 4.4E-10 80.5 10.5 85 179-272 55-171 (521)
80 cd02982 PDI_b'_family Protein 98.1 1.9E-05 4.1E-10 62.3 8.2 89 180-273 12-102 (103)
81 cd02964 TryX_like_family Trypa 98.1 2.3E-05 5E-10 65.3 8.8 79 171-256 8-115 (132)
82 PTZ00102 disulphide isomerase; 98.0 1.4E-05 3E-10 80.0 8.1 106 166-280 364-471 (477)
83 PLN02919 haloacid dehalogenase 98.0 4.1E-05 8.9E-10 84.5 12.1 94 179-279 419-541 (1057)
84 cd03008 TryX_like_RdCVF Trypar 98.0 1.8E-05 4E-10 68.1 7.5 73 177-256 22-128 (146)
85 cd02988 Phd_like_VIAF Phosduci 98.0 0.00012 2.6E-09 65.7 12.3 80 167-260 90-171 (192)
86 PLN02309 5'-adenylylsulfate re 97.9 6.1E-05 1.3E-09 75.9 10.9 115 152-272 337-455 (457)
87 COG3118 Thioredoxin domain-con 97.9 6.6E-05 1.4E-09 71.2 10.1 102 166-275 30-131 (304)
88 PTZ00062 glutaredoxin; Provisi 97.9 0.00013 2.7E-09 66.3 11.3 87 169-274 6-94 (204)
89 PRK13728 conjugal transfer pro 97.9 0.00012 2.7E-09 65.2 10.7 86 184-276 73-173 (181)
90 KOG0908 Thioredoxin-like prote 97.9 6.6E-05 1.4E-09 69.5 9.0 92 173-275 14-107 (288)
91 PF13905 Thioredoxin_8: Thiore 97.9 0.00011 2.3E-09 57.3 9.0 69 180-252 1-94 (95)
92 TIGR02187 GlrX_arch Glutaredox 97.8 0.0002 4.4E-09 64.9 10.3 89 179-276 19-113 (215)
93 PHA02125 thioredoxin-like prot 97.8 0.00016 3.4E-09 54.7 8.1 71 184-270 2-73 (75)
94 cd02969 PRX_like1 Peroxiredoxi 97.7 0.00036 7.9E-09 60.5 10.7 99 179-280 24-158 (171)
95 TIGR00411 redox_disulf_1 small 97.7 0.00032 7E-09 52.8 9.0 77 184-274 3-82 (82)
96 TIGR02739 TraF type-F conjugat 97.7 0.00073 1.6E-08 63.3 12.4 92 180-277 150-251 (256)
97 TIGR02661 MauD methylamine deh 97.7 0.00039 8.5E-09 61.9 10.2 89 177-276 71-180 (189)
98 PTZ00056 glutathione peroxidas 97.7 0.0006 1.3E-08 61.4 11.4 92 178-276 37-180 (199)
99 cd03007 PDI_a_ERp29_N PDIa fam 97.6 0.00041 9E-09 57.5 8.7 93 166-271 8-113 (116)
100 cd02967 mauD Methylamine utili 97.6 0.00051 1.1E-08 55.0 8.9 73 179-255 20-110 (114)
101 PRK13703 conjugal pilus assemb 97.5 0.00082 1.8E-08 62.7 11.0 93 180-278 143-245 (248)
102 TIGR01130 ER_PDI_fam protein d 97.5 0.00032 6.9E-09 69.4 8.9 96 166-273 353-453 (462)
103 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00053 1.2E-08 56.5 8.2 77 177-260 20-125 (126)
104 PLN02399 phospholipid hydroper 97.5 0.0013 2.8E-08 61.0 11.4 36 239-275 200-235 (236)
105 PF13728 TraF: F plasmid trans 97.5 0.0012 2.5E-08 60.4 11.0 86 179-270 119-214 (215)
106 cd03017 PRX_BCP Peroxiredoxin 97.4 0.0016 3.5E-08 54.0 10.4 88 179-269 22-138 (140)
107 PLN02412 probable glutathione 97.4 0.0013 2.7E-08 57.4 10.1 95 179-276 28-166 (167)
108 PRK15000 peroxidase; Provision 97.4 0.0023 5E-08 57.7 11.6 121 179-303 33-190 (200)
109 TIGR00412 redox_disulf_2 small 97.4 0.0011 2.5E-08 50.3 7.9 69 185-270 3-75 (76)
110 cd00340 GSH_Peroxidase Glutath 97.4 0.00027 5.9E-09 60.4 4.9 26 242-268 125-150 (152)
111 KOG2501 Thioredoxin, nucleored 97.3 0.0015 3.3E-08 56.7 9.0 95 173-271 26-153 (157)
112 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.00077 1.7E-08 58.8 7.1 94 176-272 25-155 (173)
113 PRK10382 alkyl hydroperoxide r 97.3 0.0047 1E-07 55.2 12.0 140 159-302 9-184 (187)
114 PF08534 Redoxin: Redoxin; In 97.2 0.0013 2.9E-08 55.1 7.6 82 177-262 25-136 (146)
115 TIGR02187 GlrX_arch Glutaredox 97.2 0.0028 6.2E-08 57.4 10.0 82 178-272 130-214 (215)
116 TIGR03137 AhpC peroxiredoxin. 97.1 0.0059 1.3E-07 54.2 11.3 91 178-271 29-153 (187)
117 PRK09437 bcp thioredoxin-depen 97.1 0.0066 1.4E-07 51.5 10.8 94 178-275 28-153 (154)
118 TIGR02540 gpx7 putative glutat 97.1 0.0064 1.4E-07 51.9 10.7 97 175-273 17-152 (153)
119 PRK11509 hydrogenase-1 operon 97.0 0.0059 1.3E-07 51.7 9.3 58 215-276 69-126 (132)
120 smart00804 TAP_C C-terminal do 96.9 0.0015 3.2E-08 48.4 4.6 42 8-50 10-51 (63)
121 KOG2244 Highly conserved prote 96.9 0.0011 2.4E-08 67.2 5.1 80 170-249 102-187 (786)
122 PF03943 TAP_C: TAP C-terminal 96.9 0.00064 1.4E-08 48.2 2.3 42 11-53 1-42 (51)
123 PRK00522 tpx lipid hydroperoxi 96.8 0.01 2.3E-07 51.6 9.9 87 178-271 42-166 (167)
124 PTZ00253 tryparedoxin peroxida 96.8 0.012 2.6E-07 52.7 10.3 91 179-272 35-162 (199)
125 TIGR01626 ytfJ_HI0045 conserve 96.7 0.021 4.4E-07 51.1 10.9 86 176-268 55-174 (184)
126 KOG0191 Thioredoxin/protein di 96.7 0.0094 2E-07 58.7 9.5 96 174-276 41-136 (383)
127 cd03026 AhpF_NTD_C TRX-GRX-lik 96.7 0.02 4.4E-07 44.9 9.4 83 174-268 5-88 (89)
128 PF00627 UBA: UBA/TS-N domain; 96.6 0.004 8.7E-08 40.9 4.4 35 10-46 2-36 (37)
129 KOG0190 Protein disulfide isom 96.6 0.0059 1.3E-07 62.0 7.3 98 164-272 30-130 (493)
130 cd00194 UBA Ubiquitin Associat 96.6 0.0057 1.2E-07 40.0 4.8 37 11-49 2-38 (38)
131 PF00578 AhpC-TSA: AhpC/TSA fa 96.5 0.011 2.3E-07 47.7 7.2 70 179-255 24-123 (124)
132 PRK13190 putative peroxiredoxi 96.5 0.03 6.5E-07 50.4 10.7 116 178-297 25-176 (202)
133 smart00165 UBA Ubiquitin assoc 96.5 0.0058 1.3E-07 39.8 4.5 36 11-48 2-37 (37)
134 PTZ00256 glutathione peroxidas 96.3 0.046 9.9E-07 48.3 10.7 38 237-275 142-182 (183)
135 PTZ00137 2-Cys peroxiredoxin; 96.3 0.031 6.7E-07 52.6 9.9 117 179-299 97-249 (261)
136 cd02971 PRX_family Peroxiredox 96.1 0.046 9.9E-07 45.1 9.0 80 179-261 21-130 (140)
137 cd02968 SCO SCO (an acronym fo 96.1 0.022 4.8E-07 47.1 7.1 22 178-199 20-42 (142)
138 cd02973 TRX_GRX_like Thioredox 96.0 0.026 5.7E-07 40.9 6.5 54 184-245 3-58 (67)
139 cd03014 PRX_Atyp2cys Peroxired 95.9 0.047 1E-06 45.5 8.3 75 179-260 25-129 (143)
140 PRK10606 btuE putative glutath 95.9 0.082 1.8E-06 47.2 10.1 69 175-252 20-102 (183)
141 PRK13189 peroxiredoxin; Provis 95.9 0.15 3.2E-06 46.8 12.1 92 179-273 34-162 (222)
142 cd01659 TRX_superfamily Thiore 95.6 0.024 5.2E-07 38.1 4.6 62 184-249 1-63 (69)
143 cd03016 PRX_1cys Peroxiredoxin 95.6 0.051 1.1E-06 48.9 7.6 90 181-273 26-153 (203)
144 KOG0912 Thiol-disulfide isomer 95.6 0.022 4.7E-07 54.6 5.3 93 180-276 13-108 (375)
145 cd03018 PRX_AhpE_like Peroxire 95.4 0.11 2.3E-06 43.5 8.6 82 176-260 23-133 (149)
146 PRK13191 putative peroxiredoxi 95.3 0.11 2.4E-06 47.3 9.1 92 179-273 32-160 (215)
147 PF13192 Thioredoxin_3: Thiore 94.9 0.17 3.7E-06 38.1 7.5 69 188-270 6-75 (76)
148 PF06110 DUF953: Eukaryotic pr 94.7 0.078 1.7E-06 44.2 5.8 74 168-247 7-97 (119)
149 cd02970 PRX_like2 Peroxiredoxi 94.7 0.29 6.4E-06 40.4 9.4 64 180-248 24-88 (149)
150 PRK13599 putative peroxiredoxi 94.6 0.23 4.9E-06 45.3 9.2 91 179-272 27-154 (215)
151 COG0526 TrxA Thiol-disulfide i 94.5 0.17 3.7E-06 38.2 7.0 83 180-271 32-121 (127)
152 TIGR02196 GlrX_YruB Glutaredox 94.5 0.27 5.8E-06 35.3 7.6 68 184-269 2-72 (74)
153 PF02114 Phosducin: Phosducin; 94.2 0.2 4.4E-06 47.3 7.9 112 158-279 121-239 (265)
154 PRK11657 dsbG disulfide isomer 94.0 0.29 6.2E-06 45.7 8.5 92 172-271 109-249 (251)
155 PF13848 Thioredoxin_6: Thiore 93.9 0.55 1.2E-05 40.2 9.6 113 149-270 67-182 (184)
156 KOG0190 Protein disulfide isom 93.8 0.11 2.3E-06 53.1 5.7 96 173-279 377-474 (493)
157 PRK10877 protein disulfide iso 93.6 0.32 6.8E-06 44.9 8.0 87 174-272 101-229 (232)
158 KOG4277 Uncharacterized conser 93.4 0.19 4E-06 48.3 6.2 100 167-273 31-131 (468)
159 PF14595 Thioredoxin_9: Thiore 93.3 0.17 3.8E-06 42.5 5.3 77 175-259 36-116 (129)
160 KOG2086 Protein tyrosine phosp 92.9 0.038 8.2E-07 54.2 0.8 41 10-51 4-44 (380)
161 KOG0191 Thioredoxin/protein di 92.9 0.25 5.4E-06 48.6 6.5 97 174-277 156-255 (383)
162 KOG1364 Predicted ubiquitin re 92.7 0.011 2.3E-07 57.3 -3.2 80 175-254 6-93 (356)
163 PF02845 CUE: CUE domain; Int 92.1 0.36 7.7E-06 32.4 4.5 39 11-49 2-40 (42)
164 TIGR02180 GRX_euk Glutaredoxin 91.7 0.65 1.4E-05 34.6 6.2 57 185-247 2-61 (84)
165 TIGR02200 GlrX_actino Glutared 91.4 1.4 3.1E-05 32.1 7.7 71 184-271 2-76 (77)
166 smart00546 CUE Domain that may 91.4 0.62 1.3E-05 31.3 5.2 40 11-50 3-42 (43)
167 TIGR00264 alpha-NAC-related pr 91.1 0.31 6.7E-06 40.4 4.0 35 10-45 78-112 (116)
168 TIGR03143 AhpF_homolog putativ 90.9 1.7 3.8E-05 44.9 10.4 86 171-270 466-554 (555)
169 PRK06369 nac nascent polypepti 90.6 0.35 7.7E-06 40.0 4.0 36 10-46 76-111 (115)
170 KOG4351 Uncharacterized conser 90.1 0.054 1.2E-06 49.7 -1.3 47 6-52 19-67 (244)
171 cd02976 NrdH NrdH-redoxin (Nrd 90.1 2.9 6.3E-05 29.6 8.2 67 184-268 2-71 (73)
172 cd02983 P5_C P5 family, C-term 89.3 2 4.4E-05 36.0 7.6 94 180-277 20-118 (130)
173 cd03419 GRX_GRXh_1_2_like Glut 89.0 1.9 4E-05 32.0 6.6 55 185-247 3-60 (82)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 88.8 0.41 8.9E-06 42.5 3.3 94 170-269 67-196 (197)
175 KOG1731 FAD-dependent sulfhydr 88.6 0.39 8.4E-06 49.6 3.3 101 167-276 47-155 (606)
176 PF00462 Glutaredoxin: Glutare 88.4 1.8 3.8E-05 30.6 5.8 51 185-245 2-55 (60)
177 PRK15317 alkyl hydroperoxide r 86.7 4.8 0.0001 41.2 10.1 90 171-272 106-196 (517)
178 KOG3414 Component of the U4/U6 86.2 7.3 0.00016 33.0 8.9 94 177-275 20-121 (142)
179 KOG3763 mRNA export factor TAP 85.2 1.2 2.7E-05 45.9 4.7 42 10-52 535-576 (585)
180 COG1225 Bcp Peroxiredoxin [Pos 85.0 11 0.00024 32.9 9.9 97 173-273 23-155 (157)
181 COG1308 EGD2 Transcription fac 83.8 1.7 3.6E-05 36.3 4.1 35 11-46 85-119 (122)
182 KOG0911 Glutaredoxin-related p 83.5 1.8 3.8E-05 39.9 4.5 96 162-272 5-100 (227)
183 TIGR02183 GRXA Glutaredoxin, G 83.1 5.3 0.00011 30.7 6.5 53 184-247 2-64 (86)
184 TIGR03140 AhpF alkyl hydropero 82.9 8.7 0.00019 39.3 9.9 92 170-273 106-198 (515)
185 cd03013 PRX5_like Peroxiredoxi 82.7 3.6 7.8E-05 35.3 6.0 67 179-248 28-98 (155)
186 cd02066 GRX_family Glutaredoxi 80.2 8.4 0.00018 26.9 6.4 50 186-245 4-56 (72)
187 PF02966 DIM1: Mitosis protein 79.0 7.5 0.00016 33.0 6.4 91 177-274 17-117 (133)
188 cd03028 GRX_PICOT_like Glutare 78.4 9.4 0.0002 29.5 6.6 55 181-247 8-70 (90)
189 PF02630 SCO1-SenC: SCO1/SenC; 78.0 10 0.00022 33.1 7.4 21 178-198 50-71 (174)
190 PRK11200 grxA glutaredoxin 1; 78.0 9.8 0.00021 28.8 6.5 69 184-272 3-81 (85)
191 cd03072 PDI_b'_ERp44 PDIb' fam 77.2 7.7 0.00017 31.5 6.0 60 214-275 48-109 (111)
192 PF05768 DUF836: Glutaredoxin- 77.0 9.4 0.0002 28.9 6.1 79 184-271 2-81 (81)
193 PRK10329 glutaredoxin-like pro 74.2 36 0.00078 25.8 9.0 67 186-270 5-73 (81)
194 cd03418 GRX_GRXb_1_3_like Glut 74.1 13 0.00029 26.9 6.1 52 185-247 3-58 (75)
195 TIGR02190 GlrX-dom Glutaredoxi 73.1 14 0.0003 27.7 6.1 57 177-245 5-63 (79)
196 PHA03050 glutaredoxin; Provisi 72.2 14 0.0003 30.0 6.2 53 184-247 15-76 (108)
197 TIGR02181 GRX_bact Glutaredoxi 71.8 13 0.00028 27.4 5.7 50 187-247 4-56 (79)
198 cd03029 GRX_hybridPRX5 Glutare 71.7 17 0.00038 26.3 6.2 51 185-247 4-57 (72)
199 CHL00098 tsf elongation factor 71.2 5.5 0.00012 36.1 4.0 39 12-51 3-41 (200)
200 KOG1752 Glutaredoxin and relat 70.7 5.2 0.00011 32.5 3.4 62 174-245 8-73 (104)
201 PF03413 PepSY: Peptidase prop 69.8 15 0.00033 25.6 5.4 58 167-257 2-64 (64)
202 PRK12332 tsf elongation factor 69.2 6.5 0.00014 35.6 4.0 40 11-51 5-44 (198)
203 TIGR00116 tsf translation elon 68.9 6.3 0.00014 37.8 4.0 40 11-51 5-44 (290)
204 TIGR00365 monothiol glutaredox 68.1 36 0.00079 26.7 7.7 62 174-247 6-74 (97)
205 KOG2756 Predicted Mg2+-depende 67.8 3.6 7.7E-05 39.2 2.1 37 14-50 28-64 (349)
206 cd03027 GRX_DEP Glutaredoxin ( 67.5 25 0.00055 25.6 6.3 51 186-247 5-58 (73)
207 PRK09377 tsf elongation factor 67.4 8 0.00017 37.1 4.4 41 10-51 5-45 (290)
208 KOG2792 Putative cytochrome C 67.2 18 0.0004 34.2 6.6 51 226-277 213-278 (280)
209 cd03073 PDI_b'_ERp72_ERp57 PDI 67.1 28 0.0006 28.3 7.0 63 207-273 42-110 (111)
210 KOG3171 Conserved phosducin-li 66.9 7.2 0.00016 35.9 3.8 115 157-281 133-254 (273)
211 KOG3425 Uncharacterized conser 66.5 18 0.00039 30.3 5.8 74 167-247 13-103 (128)
212 PF11009 DUF2847: Protein of u 65.4 69 0.0015 26.1 8.9 89 168-266 9-104 (105)
213 PF11547 E3_UbLigase_EDD: E3 u 63.6 19 0.00041 25.3 4.5 43 8-50 7-49 (53)
214 TIGR02189 GlrX-like_plant Glut 62.7 29 0.00062 27.5 6.2 66 184-266 10-81 (99)
215 PF03765 CRAL_TRIO_N: CRAL/TRI 62.0 12 0.00026 26.2 3.5 26 22-47 27-52 (55)
216 PF01216 Calsequestrin: Calseq 59.9 88 0.0019 31.0 10.0 100 167-276 42-146 (383)
217 KOG1071 Mitochondrial translat 59.6 11 0.00024 36.5 3.8 39 9-48 45-83 (340)
218 COG0386 BtuE Glutathione perox 59.0 34 0.00073 30.0 6.3 81 193-275 63-161 (162)
219 COG3531 Predicted protein-disu 58.2 25 0.00054 32.0 5.6 47 227-275 162-210 (212)
220 KOG3077 Uncharacterized conser 57.8 5.5 0.00012 37.5 1.4 38 10-48 8-46 (260)
221 PRK10638 glutaredoxin 3; Provi 57.1 45 0.00097 25.0 6.2 51 186-247 6-59 (83)
222 PRK10824 glutaredoxin-4; Provi 55.5 48 0.001 27.3 6.5 69 170-254 5-81 (115)
223 COG0695 GrxC Glutaredoxin and 54.6 72 0.0016 24.1 7.0 67 185-268 4-75 (80)
224 COG1999 Uncharacterized protei 53.2 41 0.00089 30.4 6.3 41 235-276 166-206 (207)
225 cd04598 CBS_pair_GGDEF_assoc T 52.5 51 0.0011 25.3 6.1 62 202-268 57-118 (119)
226 cd03023 DsbA_Com1_like DsbA fa 52.3 36 0.00078 27.7 5.4 39 178-222 3-45 (154)
227 PF07449 HyaE: Hydrogenase-1 e 52.2 56 0.0012 26.7 6.3 52 207-262 52-103 (107)
228 PF00571 CBS: CBS domain CBS d 52.2 25 0.00054 23.9 3.8 56 208-271 1-56 (57)
229 KOG1672 ATP binding protein [P 50.4 30 0.00066 31.4 4.8 99 169-276 74-176 (211)
230 COG0264 Tsf Translation elonga 49.0 27 0.00058 33.6 4.5 40 11-51 6-45 (296)
231 PF13462 Thioredoxin_4: Thiore 48.2 48 0.001 27.4 5.6 38 228-272 125-162 (162)
232 PF03474 DMA: DMRTA motif; In 47.4 20 0.00044 24.0 2.4 26 22-47 13-38 (39)
233 cd04606 CBS_pair_Mg_transporte 47.2 91 0.002 23.6 6.7 94 167-269 6-108 (109)
234 cd04599 CBS_pair_GGDEF_assoc2 46.5 1.2E+02 0.0026 22.5 7.8 91 166-267 9-103 (105)
235 cd04595 CBS_pair_DHH_polyA_Pol 44.8 1.3E+02 0.0029 22.6 7.7 91 166-267 10-108 (110)
236 COG2103 Predicted sugar phosph 44.0 34 0.00074 32.6 4.3 39 11-50 234-272 (298)
237 PF02401 LYTB: LytB protein; 43.7 86 0.0019 29.9 7.1 105 166-276 167-280 (281)
238 cd03023 DsbA_Com1_like DsbA fa 43.3 54 0.0012 26.6 5.1 35 229-270 119-153 (154)
239 TIGR02194 GlrX_NrdH Glutaredox 43.2 81 0.0017 22.8 5.5 64 187-267 4-69 (72)
240 PF06972 DUF1296: Protein of u 43.2 67 0.0015 23.5 4.7 41 10-50 5-45 (60)
241 PF01323 DSBA: DSBA-like thior 42.6 71 0.0015 27.3 6.0 37 229-271 157-193 (193)
242 PRK05441 murQ N-acetylmuramic 41.9 30 0.00066 33.1 3.8 38 12-50 237-274 (299)
243 PF13462 Thioredoxin_4: Thiore 40.7 32 0.00069 28.5 3.4 36 178-215 10-45 (162)
244 COG2761 FrnE Predicted dithiol 40.5 86 0.0019 29.0 6.3 46 229-280 174-219 (225)
245 cd04640 CBS_pair_27 The CBS do 40.3 1.7E+02 0.0037 22.9 7.6 99 166-268 9-125 (126)
246 TIGR03143 AhpF_homolog putativ 39.0 4.5E+02 0.0097 27.2 12.1 102 162-276 346-456 (555)
247 TIGR00274 N-acetylmuramic acid 38.3 38 0.00082 32.3 3.8 39 11-50 231-269 (291)
248 PTZ00062 glutaredoxin; Provisi 36.6 1.9E+02 0.0041 26.2 7.8 71 169-254 102-179 (204)
249 PF13743 Thioredoxin_5: Thiore 36.4 42 0.00092 29.3 3.6 72 167-264 101-172 (176)
250 PF13778 DUF4174: Domain of un 36.2 2E+02 0.0044 23.4 7.4 45 227-272 65-110 (118)
251 PF03646 FlaG: FlaG protein; 34.7 70 0.0015 25.5 4.3 32 239-274 66-97 (107)
252 cd03019 DsbA_DsbA DsbA family, 34.5 86 0.0019 26.4 5.1 42 229-275 133-174 (178)
253 PRK12570 N-acetylmuramic acid- 33.2 49 0.0011 31.7 3.7 39 11-50 232-270 (296)
254 KOG0944 Ubiquitin-specific pro 32.5 70 0.0015 34.2 4.8 41 10-52 635-675 (763)
255 PF07912 ERp29_N: ERp29, N-ter 32.3 1.3E+02 0.0028 25.4 5.5 54 215-269 54-114 (126)
256 TIGR02113 coaC_strep phosphopa 32.2 1.2E+02 0.0027 26.6 5.8 66 176-273 108-176 (177)
257 PRK01045 ispH 4-hydroxy-3-meth 31.8 1.8E+02 0.004 28.0 7.3 107 165-277 167-282 (298)
258 cd03019 DsbA_DsbA DsbA family, 30.6 82 0.0018 26.5 4.4 24 179-202 14-37 (178)
259 PRK10954 periplasmic protein d 30.4 1.7E+02 0.0037 26.0 6.5 39 229-271 157-201 (207)
260 cd02972 DsbA_family DsbA famil 30.4 1.5E+02 0.0032 21.4 5.3 19 229-247 73-91 (98)
261 PRK10954 periplasmic protein d 30.4 94 0.002 27.6 4.9 44 180-223 37-82 (207)
262 PF13848 Thioredoxin_6: Thiore 30.2 3.3E+02 0.007 22.8 8.7 59 207-272 14-73 (184)
263 PF03096 Ndr: Ndr family; Int 29.5 53 0.0012 31.4 3.2 44 180-225 22-65 (283)
264 PF07319 DnaI_N: Primosomal pr 29.0 33 0.00072 27.0 1.5 22 194-215 20-41 (94)
265 PRK07738 flagellar protein Fla 28.9 1E+02 0.0022 25.6 4.4 33 239-275 75-107 (117)
266 PRK08452 flagellar protein Fla 28.9 1E+02 0.0022 25.9 4.4 34 239-276 82-115 (124)
267 PRK07313 phosphopantothenoylcy 28.6 1.9E+02 0.0042 25.5 6.5 70 175-276 108-180 (182)
268 cd03024 DsbA_FrnE DsbA family, 28.6 1.1E+02 0.0025 26.3 5.0 36 229-270 165-200 (201)
269 PF00681 Plectin: Plectin repe 28.3 60 0.0013 21.9 2.5 25 244-268 12-40 (45)
270 cd04630 CBS_pair_17 The CBS do 28.1 2.7E+02 0.0058 21.1 8.0 92 167-267 10-112 (114)
271 TIGR00400 mgtE Mg2+ transporte 27.9 3.1E+02 0.0067 27.6 8.6 108 158-273 138-254 (449)
272 PRK03991 threonyl-tRNA synthet 27.7 2.3E+02 0.005 30.0 7.9 75 207-282 517-600 (613)
273 cd04624 CBS_pair_11 The CBS do 27.3 2.7E+02 0.0058 20.8 8.4 93 166-267 9-110 (112)
274 PF09673 TrbC_Ftype: Type-F co 26.9 1.2E+02 0.0026 24.7 4.5 41 230-270 62-112 (113)
275 cd04602 CBS_pair_IMPDH_2 This 25.7 3E+02 0.0065 20.9 6.8 94 166-267 10-112 (114)
276 PRK01862 putative voltage-gate 25.7 2.8E+02 0.006 28.8 8.0 111 155-273 451-573 (574)
277 cd04615 CBS_pair_2 The CBS dom 24.8 3E+02 0.0065 20.6 7.9 100 160-267 3-111 (113)
278 PRK12360 4-hydroxy-3-methylbut 24.5 3.3E+02 0.0071 26.0 7.5 103 166-276 169-280 (281)
279 COG1334 FlaG Uncharacterized f 23.5 1.1E+02 0.0023 25.6 3.6 34 239-276 78-111 (120)
280 KOG2456 Aldehyde dehydrogenase 23.1 1.2E+02 0.0027 30.7 4.4 48 154-214 334-381 (477)
281 cd04596 CBS_pair_DRTGG_assoc T 23.1 2.3E+02 0.005 21.3 5.3 92 167-267 11-106 (108)
282 PF01011 PQQ: PQQ enzyme repea 22.7 1.3E+02 0.0027 19.2 3.1 17 242-258 11-27 (38)
283 KOG2603 Oligosaccharyltransfer 22.5 1.4E+02 0.0029 29.2 4.5 103 167-277 48-165 (331)
284 TIGR00216 ispH_lytB (E)-4-hydr 22.4 4E+02 0.0087 25.4 7.7 105 166-276 166-279 (280)
285 COG2239 MgtE Mg/Co/Ni transpor 21.7 1.7E+02 0.0037 29.9 5.3 100 168-275 150-257 (451)
286 cd03031 GRX_GRX_like Glutaredo 21.6 3.2E+02 0.0069 23.4 6.3 53 183-245 2-66 (147)
287 cd04582 CBS_pair_ABC_OpuCA_ass 21.4 3.4E+02 0.0074 20.0 7.8 93 166-267 9-104 (106)
288 PRK11543 gutQ D-arabinose 5-ph 20.9 5.2E+02 0.011 24.2 8.3 108 152-267 198-316 (321)
289 COG0293 FtsJ 23S rRNA methylas 20.7 49 0.0011 30.2 1.1 108 166-276 56-178 (205)
290 cd04629 CBS_pair_16 The CBS do 20.6 3.7E+02 0.008 20.1 6.3 54 205-267 59-112 (114)
291 TIGR00715 precor6x_red precorr 20.6 3.1E+02 0.0067 25.6 6.5 75 163-238 109-199 (256)
292 PF04221 RelB: RelB antitoxin; 20.6 1.2E+02 0.0026 23.1 3.2 25 26-50 13-37 (83)
293 TIGR02742 TrbC_Ftype type-F co 20.6 2.2E+02 0.0047 24.0 4.9 43 229-271 61-112 (130)
294 cd02977 ArsC_family Arsenate R 20.4 1E+02 0.0022 24.2 2.8 77 185-272 2-85 (105)
No 1
>smart00594 UAS UAS domain.
Probab=99.96 E-value=1.9e-28 Score=203.78 Aligned_cols=116 Identities=48% Similarity=0.762 Sum_probs=109.4
Q ss_pred hcCCCc-cccccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHH
Q 020843 156 LYRPPF-HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 234 (320)
Q Consensus 156 lf~Ppf-~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~ 234 (320)
+|.||+ ..|+.|+|++|++.|++++|++|||||++||.+|+.|||+||+|++|+++|++|||+|++|+++++|.++++.
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence 578888 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEecCCCce----EEEEecCCChHHHHHHHH
Q 020843 235 YKLDSIPVVLVVDPITGQK----MRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 235 Y~v~~~P~i~Iidp~tG~~----v~~~~G~~~~~~fl~~L~ 271 (320)
|++.+||+++||+|++|+. +.+++|++++++|+..|.
T Consensus 82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhhC
Confidence 9999999999999988764 456789999999998873
No 2
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.95 E-value=7.1e-28 Score=197.29 Aligned_cols=113 Identities=48% Similarity=0.900 Sum_probs=109.7
Q ss_pred cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
+|.|+|++|++.|++++||||||||++||..|+.|+|+||+|+.|+++|++|||+|++|+++++|.++++.|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
+||+|++|+.+.++.|++++++|+..|.++++.
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 999998899999999999999999999999875
No 3
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-28 Score=229.80 Aligned_cols=194 Identities=37% Similarity=0.686 Sum_probs=152.4
Q ss_pred cchHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCCcC
Q 020843 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANPGPEENSVTAGQEIGDEV 87 (320)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~~~~~~~~~~~sp~~~~~~~~~d~~~~~~~~~~~d~V 87 (320)
..+.+++.+|++||..++.+.|++||++++|||+.||++||+.++.....++ ...+
T Consensus 4 ~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~------------------------~~~a 59 (356)
T KOG1364|consen 4 GAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSS------------------------SSAA 59 (356)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCC------------------------cccC
Confidence 3478899999999555999999999999999999999999998764222111 0112
Q ss_pred CCCCcccccccccCcccccCCCCCCCCCCCcch-hccccchhhhcCCCcccCcCCCCCccchhHHhhhhhcCCCcccccc
Q 020843 88 RAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSL-IAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFN 166 (320)
Q Consensus 88 raPi~~~~etLv~~~~~~~~~~~~~~~~~~~~~-~~~r~f~~e~~~~~~~~~~~~~~~~~~s~~~~l~~lf~Ppf~~~~~ 166 (320)
-+|++.+|++|+..... +. ...... .+-+ +|.+. +...+++.+|+.|||||++|+++
T Consensus 60 ~sp~~~~re~l~~~~~~---~d-----~~~~s~~~p~~----------~~~~~----s~~~~~~srL~slfrpp~~i~~~ 117 (356)
T KOG1364|consen 60 PSPIEPQREVLFDPLGI---MD-----QSTSSILDPSE----------NQDDE----SEHASSQSRLASLFRPPTDILSH 117 (356)
T ss_pred CCcccccceeeeccccc---cc-----cCcccccCccc----------ccchh----hhhccccchhhhhcCCCcchhhc
Confidence 33899999999864310 00 000000 0101 11111 12245678999999999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
|++++|+..|.++.+|||| +.++.+|+++..+|++..+|||+||
T Consensus 118 gsld~ak~~a~sk~~wllV------------------------------------~~Dtseg~~~~~Fy~~~~~P~i~ii 161 (356)
T KOG1364|consen 118 GSLDAAKSTASSKQRWLLV------------------------------------LDDTSEGQPFSAFYHISSLPHIAII 161 (356)
T ss_pred CChhhhhhcccccceEEEE------------------------------------eeccCCCCchhhheeccCCceEEEE
Confidence 9999999999999999999 5678899999999999999999999
Q ss_pred ecCCCceEEEEecCCChHHHHHHHHHHHhcCCCcccc
Q 020843 247 DPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHA 283 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~~fl~~L~~fld~~~~d~~~ 283 (320)
||+||++|++|.|.+.|+.|+..|.+|++.+++|+-+
T Consensus 162 Dp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~va 198 (356)
T KOG1364|consen 162 DPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVA 198 (356)
T ss_pred CCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccc
Confidence 9999999999999999999999999999999999644
No 4
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.94 E-value=1.3e-26 Score=191.78 Aligned_cols=114 Identities=23% Similarity=0.417 Sum_probs=108.0
Q ss_pred cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
+|.|+|++|++.||++.|+||||||++.|.+|..|||+||+|++|+++|++|||+|++|++++||.++++.+++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCc--eEEEEecCCChHHHHHHHHHHHhcC
Q 020843 244 LVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 244 ~Iidp~tG~--~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
+||+|++++ .+.+++|+++|++|+..|..+++++
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999987654 4788999999999999999998763
No 5
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.89 E-value=9e-23 Score=172.69 Aligned_cols=114 Identities=23% Similarity=0.297 Sum_probs=104.0
Q ss_pred cccccHHHHHHHH----HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH------------
Q 020843 164 MFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------ 227 (320)
Q Consensus 164 ~~~gsf~~A~~~A----k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e------------ 227 (320)
+|.|+|++|++.| +++.|+|+||||++.+..|..|||+++|++.|.++|++|||+|.+|+..++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 4679999999999 999999999999999999999999999999999999999999999999987
Q ss_pred ----HHHHHHHcCCCCCcEEEEEecCCC--ceEEEEecCCChHHHHHHHHHHHhcC
Q 020843 228 ----GKKVCTYYKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 228 ----g~~~~~~Y~v~~~P~i~Iidp~tG--~~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
+.+.++.+++..||+++||.+..+ +.+.+++|.++|+++++.|.+.++.+
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 455777888999999999998544 45678899999999999999998764
No 6
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.70 E-value=1.1e-16 Score=123.63 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+|++|+++|++++|+|||+|+++||..|+.|++.||.++.|+++++++||++++|.++.++...... ..+|+++||
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999988776442222 459999999
Q ss_pred ec
Q 020843 247 DP 248 (320)
Q Consensus 247 dp 248 (320)
||
T Consensus 81 dp 82 (82)
T PF13899_consen 81 DP 82 (82)
T ss_dssp ET
T ss_pred CC
Confidence 97
No 7
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.63 E-value=4.1e-15 Score=124.43 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh-H-HHHHHH----HcCCCCCcEE
Q 020843 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-E-GKKVCT----YYKLDSIPVV 243 (320)
Q Consensus 170 ~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~-e-g~~~~~----~Y~v~~~P~i 243 (320)
++|++.|++++|+|||+|+++||..|+.|++.||.+++|.++|+++||++.+|++.. + ...+.+ .|++.++|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 578999999999999999999999999999999999999999999999999998753 2 222222 4688999999
Q ss_pred EEEecCCCceEEEEec
Q 020843 244 LVVDPITGQKMRSWCG 259 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G 259 (320)
+|++| .|+.+....+
T Consensus 85 vfl~~-~G~~~~~~~~ 99 (124)
T cd02955 85 VFLTP-DLKPFFGGTY 99 (124)
T ss_pred EEECC-CCCEEeeeee
Confidence 99999 5998876543
No 8
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.62 E-value=1.3e-15 Score=128.21 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+|++|++.|++++|+|||+|+++||..|+.|++.||++++|+++++++||.+.++.+..+. .+. .. ...+|+++|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~-~~~-~~-g~~vPtivFl 86 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDK-NLS-PD-GQYVPRIMFV 86 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCC-CcC-cc-CcccCeEEEE
Confidence 48999999999999999999999999999999999999999999999999988888764320 000 01 1468999999
Q ss_pred ecCCCceEEEEecC
Q 020843 247 DPITGQKMRSWCGM 260 (320)
Q Consensus 247 dp~tG~~v~~~~G~ 260 (320)
|| +|+.+.++.|+
T Consensus 87 d~-~g~vi~~i~Gy 99 (130)
T cd02960 87 DP-SLTVRADITGR 99 (130)
T ss_pred CC-CCCCccccccc
Confidence 99 58988888775
No 9
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=9.7e-15 Score=120.81 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcC-CeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh-----------HHHHHHHHcC
Q 020843 169 FEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-----------EGKKVCTYYK 236 (320)
Q Consensus 169 f~~A~~~Ak~~~-K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~-----------eg~~~~~~Y~ 236 (320)
+-++++.|++++ |++||+|+++||..|+.|...++.++.+.+.++++|+++.+++++. ....++..|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 567899999999 9999999999999999999999999999999999999999998764 3578899999
Q ss_pred CCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 237 v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
+..+|+++|+++..|+.+.++.|+.+.+.|...|..+++.
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999984378899999999999999999988764
No 10
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.51 E-value=1.1e-13 Score=110.88 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh--HHHHHHHHcCCCCCcEEEEEec
Q 020843 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 171 ~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~--eg~~~~~~Y~v~~~P~i~Iidp 248 (320)
++++.|.+++|++||+|+++||..|+.|...++.++.+.+.++++++++.+|++.. ....+++.|++.++|+++|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56778889999999999999999999999999999999999998999999998653 3678999999999999999997
Q ss_pred CCCceEEEEecCCChHHHHHHH
Q 020843 249 ITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 249 ~tG~~v~~~~G~~~~~~fl~~L 270 (320)
-.|+.+.+..|+.+.++|.+.|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 3488888889999999888766
No 11
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.44 E-value=6.6e-13 Score=115.67 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=75.1
Q ss_pred CCCccccccccH-HHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC-hHH-HHHHH-
Q 020843 158 RPPFHLMFNGSF-EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG-KKVCT- 233 (320)
Q Consensus 158 ~Ppf~~~~~gsf-~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s-~eg-~~~~~- 233 (320)
..|... -.| ++|++.|++++|+|||+|...||..|++|.+++|.|++|.++||++||.+++|.+. ++- ..|..
T Consensus 17 ~~~V~W---~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~ 93 (163)
T PF03190_consen 17 HNPVNW---QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNA 93 (163)
T ss_dssp TSSS-----B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHH
T ss_pred cCCCCc---ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHH
Confidence 345555 555 59999999999999999999999999999999999999999999999999999887 332 12211
Q ss_pred ---HcCCCCCcEEEEEecCCCceEEEEecCCChH------HHHHHHHHHHhc
Q 020843 234 ---YYKLDSIPVVLVVDPITGQKMRSWCGMVQPE------SLLEDLVPFMDG 276 (320)
Q Consensus 234 ---~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~------~fl~~L~~fld~ 276 (320)
..+..++|+.+|++| .|+.+.. ..+..++ .|++.|..+-+.
T Consensus 94 ~~~~~~~gGwPl~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 94 VQAMSGSGGWPLTVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp HHHHHS---SSEEEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHHH
T ss_pred HHHhcCCCCCCceEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHHH
Confidence 125689999999999 5887754 2345443 666666665543
No 12
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.37 E-value=4.5e-13 Score=108.06 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=79.5
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH------------------HHHHHHHcCC
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------------GKKVCTYYKL 237 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e------------------g~~~~~~Y~v 237 (320)
|+.++|.++|+|+++||+.|+.|...++.++.+...++++|.++.+++++.. ..++++.|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 5789999999999999999999999999999999999989999999987643 3568899999
Q ss_pred CCCcEEEEEecCCCceEEEEecCCChHHHHHHH
Q 020843 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 238 ~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
..+|+++|+|+ .|+.+.++.|++++++|+..|
T Consensus 81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 99999999996 599999999999999999876
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.36 E-value=7.2e-13 Score=90.80 Aligned_cols=41 Identities=27% Similarity=0.714 Sum_probs=36.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 52 (320)
+++|.+||+| ||+++++|++||++++|||+.||++||+.++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5799999999 7899999999999999999999999999765
No 14
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.8e-12 Score=107.23 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=96.4
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh--------------HHHHHH
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--------------EGKKVC 232 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~--------------eg~~~~ 232 (320)
-+.-++.+.|..++|.+|+-|-++.|..|..|.+|++..+.+++++.+||.++-+++.+. .-+.++
T Consensus 29 ~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa 108 (182)
T COG2143 29 IDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELA 108 (182)
T ss_pred hhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHH
Confidence 345677888899999999999999999999999999999999999999999999987642 125799
Q ss_pred HHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 233 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 233 ~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
+.|+|.++||+++.|. +|+.+..++|+++|+.|+..|.=+-+.
T Consensus 109 ~kf~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 109 QKFAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHhccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999996 799999999999999999887665443
No 15
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.34 E-value=6e-12 Score=129.68 Aligned_cols=105 Identities=16% Similarity=0.295 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC--hHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s--~eg~~~~~~Y~v~~~P~i~ 244 (320)
.+|+++++.|++++|+++|+|+++||..|+.|.+.+|.+++|++.++ +|+++++|++. ++..++.++|++..+|+++
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 47899999999999999999999999999999999999999999997 69999999875 4567899999999999999
Q ss_pred EEecCCCceE--EEEecCCChHHHHHHHHHH
Q 020843 245 VVDPITGQKM--RSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 245 Iidp~tG~~v--~~~~G~~~~~~fl~~L~~f 273 (320)
++++ +|+.+ .++.|+.++++|++.|++.
T Consensus 540 ~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 540 FFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 9997 58774 5788999999999988874
No 16
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=2.4e-12 Score=106.38 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=83.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCC--CcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~--~P~i~ 244 (320)
.+|++|++.|++++|+|||+|+++||.+|+.|.+.+...+.+.. ++.+||.+.++.+... ....|++.+ +|+++
T Consensus 6 ~~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~---~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 6 VTLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP---KDEEFSPDGGYIPRIL 81 (117)
T ss_pred eeHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc---hhhhcccCCCccceEE
Confidence 47999999999999999999999999999999998888777766 6778998877765422 234677765 99999
Q ss_pred EEecCCCceEEE---EecCCChHHHHHHHHHHHh
Q 020843 245 VVDPITGQKMRS---WCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 245 Iidp~tG~~v~~---~~G~~~~~~fl~~L~~fld 275 (320)
|++| .|+.+.+ ..|+...+.|.+.|.....
T Consensus 82 f~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 82 FLDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred EECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 9998 5998774 4577777778777766654
No 17
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.28 E-value=9.5e-11 Score=99.99 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=82.5
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCce
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~ 253 (320)
+.|...+|.++|+|+++||..|+.|...+- .+.+-++..+-|+.++++..+...+++.|++..+|+++|+++ .|+.
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~ 89 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE 89 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence 445578999999999999999999965432 233334445567777777666667899999999999999997 5999
Q ss_pred EEEEecCCChHHHHHHHHHHHhcCCC
Q 020843 254 MRSWCGMVQPESLLEDLVPFMDGGPR 279 (320)
Q Consensus 254 v~~~~G~~~~~~fl~~L~~fld~~~~ 279 (320)
+.++.|..+.++|.+.|...+...++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~~ 115 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEPL 115 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999987765
No 18
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.99 E-value=7.1e-09 Score=83.28 Aligned_cols=93 Identities=18% Similarity=0.349 Sum_probs=71.8
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCCh-HHHHHHHHcCCCCCcEEE
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS-EGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~-eg~~~~~~Y~v~~~P~i~ 244 (320)
.|++++..+ .+|+++|+|+++||.+|+.+. |.+.++.++ +..|+.+|.+.. +...+++.|++..+|+++
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 566666543 499999999999999999995 555554443 678999998764 356899999999999988
Q ss_pred EEecCCCceEEEEecCCChHHHHHHHH
Q 020843 245 VVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
|+. .|+.+.++.| ..++++...+.
T Consensus 77 ~~~--~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 77 FYK--DGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEe--CCeEEEEEeC-CCHHHHHHHHH
Confidence 873 6999999999 55666666554
No 19
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.98 E-value=5.2e-09 Score=82.06 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+|++.+.. ..+|++||+|+++||..|+.+...+ +.+.+.+...+.+..+|.+.. ..+++.|++.++|+++|++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCC--HHHHHHcCCCCCCEEEEEe
Confidence 35555443 4589999999999999999997643 455555566788899988764 4688899999999999997
Q ss_pred cCCCceEEEEecCCChHHHHHHH
Q 020843 248 PITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 248 p~tG~~v~~~~G~~~~~~fl~~L 270 (320)
.|+.+.+..|..+.+++...|
T Consensus 75 --~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 --AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --CCEEeeeecCCCCHHHHHHHh
Confidence 588888889988888777654
No 20
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.95 E-value=3e-09 Score=107.92 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=87.0
Q ss_pred HHHHHHhcC--CeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecC--ChHHHHHHHHcCCCCCcEEEEEe
Q 020843 172 AKDAASVQD--KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--TSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 172 A~~~Ak~~~--K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~--s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
.++.+.+++ |++||||+.+||-.|+.+++.||+++.|..-+. ++|+.|.|++ +++-.++.++|++-+.|++++.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 455555555 599999999999999999999999999988887 7999999975 56778999999999999999999
Q ss_pred cCCCceEEEEecCCChHHHHHHHHHHH
Q 020843 248 PITGQKMRSWCGMVQPESLLEDLVPFM 274 (320)
Q Consensus 248 p~tG~~v~~~~G~~~~~~fl~~L~~fl 274 (320)
+. |+....+.|+++.+.|++.|+++.
T Consensus 543 ~~-g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 543 PQ-GSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CC-CCcCcCCcceecHHHHHHHHHHhc
Confidence 85 555545899999999999998763
No 21
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=98.91 E-value=9e-09 Score=100.27 Aligned_cols=110 Identities=20% Similarity=0.364 Sum_probs=101.9
Q ss_pred cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
-|+|+.-+|+..||+.++.++|||..+ .-.+++|+|-+|.+..|.+.+...||.++++..+....+|+..|.+...|.+
T Consensus 3 wfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ 81 (506)
T KOG2507|consen 3 WFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSI 81 (506)
T ss_pred ccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccce
Confidence 478999999999999999999999876 5578899999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
++|+. +|..+..+.|++.++++.+.|+.++-
T Consensus 82 ffIg~-sGtpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 82 FFIGF-SGTPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred eeecC-CCceeEEeeccccHHHHHHHHHHHHH
Confidence 99995 89999999999999999888777643
No 22
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.90 E-value=1.5e-08 Score=80.03 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
.+|++++ +++++++|+|+++||..|+.+...+ ..+.+.+. ..+++..+|.+..+...+++.|++..+|++.
T Consensus 8 ~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 8 EDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred HhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 3455444 4577999999999999999997664 34455555 5688889998876677889999999999987
Q ss_pred EEecCCCceEEEEecCCChHHHHHH
Q 020843 245 VVDPITGQKMRSWCGMVQPESLLED 269 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~~~~~fl~~ 269 (320)
++. .|+.+.++.|..+++.+++.
T Consensus 81 ~~~--~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 81 YFE--NGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred EEe--CCCeeEEeCCCCCHHHHHhh
Confidence 775 48888888999988877653
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=98.89 E-value=2.6e-08 Score=84.60 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=74.4
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEE
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~ 255 (320)
..+++|+++|+|+++||..|+.|.. +| +.+.+-+..++.++.+|.+.. ..+++.|++.++|+++|+. .|+.+.
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~v~ 120 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQVVD 120 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEEEE
Confidence 3456999999999999999999965 33 445555667888999988764 3588999999999999886 599999
Q ss_pred EEecCCChHHHHHHHHHH
Q 020843 256 SWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 256 ~~~G~~~~~~fl~~L~~f 273 (320)
++.|..+.+.|.+.|.+.
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 999999988888877764
No 24
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.3e-08 Score=87.32 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+..+-...=.+.++++||+||++||.+|+.|-.-+ ++.+.++ ...|-|+.+|.++. ..++..|+|..+|+++++
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~g~~k~~kvdtD~~--~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-AGKFKLYKVDTDEH--PELAEDYEISAVPTVLVF 122 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-cCeEEEEEEccccc--cchHhhcceeeeeEEEEE
Confidence 477777777888999999999999999999995432 2222333 44688999987764 348889999999999999
Q ss_pred ecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
. +|+++.++.|..+.+.+.+.++.|+.
T Consensus 123 k--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 K--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred E--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 8 59999999999999988888888874
No 25
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.86 E-value=3.4e-08 Score=77.42 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=77.7
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
.-+|++.+.. .++.++|+|+++||..|+.+...+ ..+.+.+..++.|+.+|.+.. ..+++.|++..+|++.+
T Consensus 6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCDEN--KELCKKYGVKSVPTIIF 77 (103)
T ss_dssp TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTS--HHHHHHTTCSSSSEEEE
T ss_pred HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhhcc--chhhhccCCCCCCEEEE
Confidence 3466666554 679999999999999999996432 344444555899999998744 67999999999999999
Q ss_pred EecCCCceEEEEecCCChHHHHHHHHH
Q 020843 246 VDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 246 idp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
+.. |+.+.++.|..+++.+.+.|.+
T Consensus 78 ~~~--g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 78 FKN--GKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EET--TEEEEEEESSSSHHHHHHHHHH
T ss_pred EEC--CcEEEEEECCCCHHHHHHHHHc
Confidence 984 8888899999999988887764
No 26
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.86 E-value=4.6e-08 Score=77.36 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
|||.=....++ .+|++||+|+++||..|+.+.+.+ +.|.+-++.++.++.+|.++. ..+...|++.++|+++|+
T Consensus 1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEE
Confidence 34533444444 889999999999999999997654 456666666788999998754 357889999999999999
Q ss_pred ecCCCceEEEEecCCChHHHHHHH
Q 020843 247 DPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
. .|+.+.++.|..+.++|.+.|
T Consensus 75 ~--~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 75 K--DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred E--CCeEEEEEeCCccHHHHHHhh
Confidence 6 489999999998888877655
No 27
>PHA02278 thioredoxin-like protein
Probab=98.82 E-value=5.5e-08 Score=78.80 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChH--HHHHHHHcCCCCCcEEEEEecCCCc
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVDPITGQ 252 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~e--g~~~~~~Y~v~~~P~i~Iidp~tG~ 252 (320)
++++.++|+|+++||.+|+.|. |.+.++-.+ ..-|+.+|++..+ ...+++.|++.++|+++++. .|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~ 83 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ 83 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence 5899999999999999999995 444444332 2336777776532 45699999999999999998 499
Q ss_pred eEEEEecCCChHHHHH
Q 020843 253 KMRSWCGMVQPESLLE 268 (320)
Q Consensus 253 ~v~~~~G~~~~~~fl~ 268 (320)
.+.++.|..+++.+.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 9999999888876543
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.82 E-value=4.7e-08 Score=79.58 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=74.0
Q ss_pred ccccHHHHHHHHH--hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCc
Q 020843 165 FNGSFEKAKDAAS--VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (320)
Q Consensus 165 ~~gsf~~A~~~Ak--~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P 241 (320)
|..+.++..+++. ..+|++||+|+++||..|+.+...+- .+.+.++. ++.+..+|.+.. ..+++.|++.++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~P 81 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVP 81 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecccc--HHHHHHcCCccCC
Confidence 3345555555553 47899999999999999999976432 44444443 588888887754 3578899999999
Q ss_pred EEEEEecCCCceEEEEecCCChHHHHHHHH
Q 020843 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
+++|+. .|+.+....|..+.+.+.+.|.
T Consensus 82 t~~i~~--~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 82 AIVGII--NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence 999996 5888888889888776655554
No 29
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.81 E-value=3.3e-08 Score=80.05 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHH-HcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCT-YYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~-~Y~v~~~P~i~ 244 (320)
.+|+ ++..+++++|.+||+|+++||..|+.|... | ..+.+.++. ++.+..++.+..+ ..++. .|++..+|++.
T Consensus 9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFPTIL 83 (109)
T ss_pred HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCCEEE
Confidence 3454 566667889999999999999999999765 3 456666665 5999999987632 34554 59999999999
Q ss_pred EEecCCCceEEEEecC-CChHHHHH
Q 020843 245 VVDPITGQKMRSWCGM-VQPESLLE 268 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~-~~~~~fl~ 268 (320)
++++. +..+..+.|. .+.+.++.
T Consensus 84 ~f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 84 FFPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EEcCC-CCCceeccCCCCCHHHHHh
Confidence 99874 4456677884 67777654
No 30
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.80 E-value=8.8e-08 Score=76.68 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=66.7
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceE
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v 254 (320)
+.+.+|.++|+|+++||.+|+.+...+ +.+.+-.+. ...|..++.+.. .+++.|++..+|+++|+. .|+.+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d~~---~~~~~~~v~~~Pt~~~~~--~g~~~ 84 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEADTI---DTLKRYRGKCEPTFLFYK--NGELV 84 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCCCH---HHHHHcCCCcCcEEEEEE--CCEEE
Confidence 335799999999999999999996532 334444443 356778887743 578999999999998886 59999
Q ss_pred EEEecCCChHHHHHHHHH
Q 020843 255 RSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 255 ~~~~G~~~~~~fl~~L~~ 272 (320)
.++.| .+++.+.+.|.+
T Consensus 85 ~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEec-CChHHHHHHHhh
Confidence 99988 477777776653
No 31
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.3e-08 Score=78.97 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=74.4
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
..+|+.....+...+|+|+|+|+++||.+|..+ .|.+.++-.+ +-+|+++|++. -..+++.|++...||+
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF 78 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence 357788888888889999999999999999999 4777777764 47899999998 8889999999999999
Q ss_pred EEEecCCCceEEEEecCC
Q 020843 244 LVVDPITGQKMRSWCGMV 261 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~ 261 (320)
.++- .|+.+.++.|..
T Consensus 79 ~f~k--~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 79 VFYK--GGEEVDEVVGAN 94 (106)
T ss_pred EEEE--CCEEEEEEecCC
Confidence 9995 699999998843
No 32
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=98.78 E-value=9.4e-09 Score=102.96 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=78.9
Q ss_pred HHhhhhhcCCCccccccccHHHHHHHHHhc----CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC
Q 020843 150 RDNLASLYRPPFHLMFNGSFEKAKDAASVQ----DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT 225 (320)
Q Consensus 150 ~~~l~~lf~Ppf~~~~~gsf~~A~~~Ak~~----~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s 225 (320)
.+.+.+.|-.....++.+.+..|...|..+ -|+|++|+|++.......||+.|+||+.|.++|+++||+|.+|+.+
T Consensus 148 ~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt~ 227 (460)
T KOG1363|consen 148 VDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVTE 227 (460)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeecccccC
Confidence 445556664433334448777777666544 5999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCC--CCcEEEEEec
Q 020843 226 SEGKKVCTYYKLD--SIPVVLVVDP 248 (320)
Q Consensus 226 ~eg~~~~~~Y~v~--~~P~i~Iidp 248 (320)
++++.+.+.+.+. .+|++.++.+
T Consensus 228 ~e~~~~~~~~~~r~~~~~~~~~~~~ 252 (460)
T KOG1363|consen 228 SENLLVFNSLLNRSISSPAAVTNKA 252 (460)
T ss_pred chhhHHHHHHhhcccchhhhhhcch
Confidence 9999999999887 4455555544
No 33
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.77 E-value=6e-08 Score=77.50 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
..+|++.+. +.+|.+||+|+++||..|+.+...+ ..+.+.++..+.+..++.+..+...+++.|++.++|++.|
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 456766664 4688999999999999999996532 2455555666778888888776778999999999999999
Q ss_pred EecCC---CceEEEEecCCChHHHHHHH
Q 020843 246 VDPIT---GQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 246 idp~t---G~~v~~~~G~~~~~~fl~~L 270 (320)
+.+.. +.....+.|..+.+++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 99732 12345677888877765543
No 34
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.76 E-value=7.3e-08 Score=84.43 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh--HHH-------------------HHHHH
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGK-------------------KVCTY 234 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~--eg~-------------------~~~~~ 234 (320)
...++|+++|+|+++||+.|+.+- +.+.++.+.++.++.++.++. +.. ++.+.
T Consensus 59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 345689999999999999999874 556667677777777775432 112 34456
Q ss_pred cCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 235 Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
|++..+|+.+|||+ +|+.+.++.|..+.+++.+.|.+.+.
T Consensus 133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 77788999999998 59999999999999999999998874
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.75 E-value=8.4e-08 Score=75.05 Aligned_cols=93 Identities=13% Similarity=0.304 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+|++++..+. +|.++|+|+.+||..|+.|.+.+ +.+.+-+..++.++.+|.+.. ..+++.|++..+|+++|+.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l---~~l~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVF---EELAKEAFPSVLFLSIEAEEL--PEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHH---HHHHHHhCCceEEEEEccccC--HHHHHhcCCccccEEEEEE
Confidence 5667776664 79999999999999999996532 233333345788999887643 3578899999999999996
Q ss_pred cCCCceEEEEecCCChHHHHHHH
Q 020843 248 PITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 248 p~tG~~v~~~~G~~~~~~fl~~L 270 (320)
.|+.+.++.|. .++++.+.|
T Consensus 77 --~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 77 --NGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred --CCEEEEEEeCC-CHHHHHHhh
Confidence 48888888885 455555443
No 36
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.72 E-value=1.3e-07 Score=81.03 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHH---hcceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l---~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
..|++++..+ .+|+++|+|+++||.+|..|. |.+.++- .+...|+.+|++... .+++.|++.+.|++
T Consensus 12 ~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~------p~l~~la~~~~~~~~~~kVDVDe~~--dla~~y~I~~~~t~ 81 (142)
T PLN00410 12 WAVDQAILAE--EERLVVIRFGHDWDETCMQMD------EVLASVAETIKNFAVIYLVDITEVP--DFNTMYELYDPCTV 81 (142)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCChhHHHHH------HHHHHHHHHcCCceEEEEEECCCCH--HHHHHcCccCCCcE
Confidence 3667776643 789999999999999999994 4444444 333556999998643 68999999977766
Q ss_pred EEEecCCCc-eEEEEec--------CCChHHHHHHHHHHHhcC
Q 020843 244 LVVDPITGQ-KMRSWCG--------MVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 244 ~Iidp~tG~-~v~~~~G--------~~~~~~fl~~L~~fld~~ 277 (320)
+++-. .|+ ++.+..| ..+.++|++.++.++..-
T Consensus 82 ~~ffk-~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 82 MFFFR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred EEEEE-CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 65553 587 6777778 678899999999887643
No 37
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.71 E-value=1.3e-07 Score=75.33 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+|++.+. ..++.++|+|+++||..|+.|...+ +.+.+-++..+.|..+|.+.. ..+++.|++..+|+++++
T Consensus 9 ~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 9 EDFPELVL---NRKEPWLVDFYAPWCGPCQALLPEL---RKAARALKGKVKVGSVDCQKY--ESLCQQANIRAYPTIRLY 80 (104)
T ss_pred HHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCch--HHHHHHcCCCcccEEEEE
Confidence 35655543 4577999999999999999995322 233333344577888887764 458899999999999999
Q ss_pred ecCCCceEEEEecCCC-hHHHHH
Q 020843 247 DPITGQKMRSWCGMVQ-PESLLE 268 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~-~~~fl~ 268 (320)
.. .|+.+.++.|..+ .+++.+
T Consensus 81 ~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 81 PG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred cC-CCCCceEccCCCCCHHHHHh
Confidence 85 3477888889876 777654
No 38
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.70 E-value=1.3e-07 Score=77.89 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=75.1
Q ss_pred cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHH-HHcCCCCCcE
Q 020843 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC-TYYKLDSIPV 242 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~-~~Y~v~~~P~ 242 (320)
+.+.+|+++.+. .++++++||+|+++||..|+.|...+ +++.+.++....|.++|.+... .++ +.|++.+||+
T Consensus 14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PT 87 (113)
T cd03006 14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPV 87 (113)
T ss_pred echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCE
Confidence 345688877554 67899999999999999999996421 3455555667788999987554 356 5899999999
Q ss_pred EEEEecCCCceEEEEecCCChHHHHH
Q 020843 243 VLVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 243 i~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
|.++- .|+...+..|..+.+.++.
T Consensus 88 l~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 88 IHLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEE--CCccceEEeCCCCHHHHHh
Confidence 99994 5777777889888888765
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.69 E-value=3.4e-07 Score=71.25 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=70.7
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEE
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~ 257 (320)
..+|.++|+|+++||..|..+...+ ..+.+-++.++.|+.+|.+... .+++.|++..+|+++++. .|+.+...
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~P~~~~~~--~g~~~~~~ 84 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDENP--DIAAKYGIRSIPTLLLFK--NGKEVDRS 84 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCcCCEEEEEe--CCcEeeee
Confidence 4578999999999999999996543 3444455667889999877653 477889999999999995 58888888
Q ss_pred ecCCChHHHHHHHHHH
Q 020843 258 CGMVQPESLLEDLVPF 273 (320)
Q Consensus 258 ~G~~~~~~fl~~L~~f 273 (320)
.|..+.+++...|.+.
T Consensus 85 ~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 85 VGALPKAALKQLINKN 100 (101)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 8988888887777654
No 40
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.7e-08 Score=100.83 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC-hHH-HH---HHHHcC-CCCCcEE
Q 020843 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG-KK---VCTYYK-LDSIPVV 243 (320)
Q Consensus 170 ~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s-~eg-~~---~~~~Y~-v~~~P~i 243 (320)
++|.+.|++++|+|||.|-..||..||+|.++.|.||+|.++||++||.++||-+. |+- .. +++-.. -.+.|.-
T Consensus 33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 68999999999999999999999999999999999999999999999999999765 332 22 222222 3579999
Q ss_pred EEEecCCCceE
Q 020843 244 LVVDPITGQKM 254 (320)
Q Consensus 244 ~Iidp~tG~~v 254 (320)
+|+.| .|+..
T Consensus 113 VfLTP-d~kPF 122 (667)
T COG1331 113 VFLTP-DGKPF 122 (667)
T ss_pred EEECC-CCcee
Confidence 99999 58775
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.66 E-value=2e-07 Score=71.91 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred HHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHH--hcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecC
Q 020843 172 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (320)
Q Consensus 172 A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l--~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~ 249 (320)
....+.++++.++|+|+++||..|+.+...+ ..+.+.+ +.++.|..++.+. ...+++.|++..+|+++++++.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 3445556666999999999999999996542 3555566 5778888888776 5568899999999999999973
Q ss_pred CCceEEEEecCCChHHHHHH
Q 020843 250 TGQKMRSWCGMVQPESLLED 269 (320)
Q Consensus 250 tG~~v~~~~G~~~~~~fl~~ 269 (320)
|..+.+..|..+++++++.
T Consensus 82 -~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 82 -SKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -CcccccCCCCcCHHHHHhh
Confidence 4666777888888877653
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=98.66 E-value=3.9e-07 Score=73.20 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=72.2
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+|++.+ .+.+++++|+|+++||+.|..+...+ +.+.+-++.++.+..+|.+... .+++.|++..+|+++|+.
T Consensus 12 ~~~~~v---~~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~ 83 (109)
T PRK09381 12 SFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFK 83 (109)
T ss_pred hHHHHH---hcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEEe
Confidence 455444 24689999999999999999995322 2333344456778888887654 467889999999999995
Q ss_pred cCCCceEEEEecCCChHHHHHHHHHHH
Q 020843 248 PITGQKMRSWCGMVQPESLLEDLVPFM 274 (320)
Q Consensus 248 p~tG~~v~~~~G~~~~~~fl~~L~~fl 274 (320)
.|+.+.+..|..+.+++...|.+.+
T Consensus 84 --~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 84 --NGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHhc
Confidence 5888888899888887776666554
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.65 E-value=2.5e-07 Score=74.01 Aligned_cols=96 Identities=8% Similarity=0.133 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
+++++.+++++ ++.+||+|+++||..|+.+... |. .+.+-++. ++.+..+|.+.. ..+++.|++.++|+++
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEPV-WN--EVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhChH-HH--HHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEE
Confidence 56677777644 6789999999999999999763 32 34444432 477777777653 3578899999999999
Q ss_pred EEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 245 VVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
++. .| .+....|..+.+++.+.+.+
T Consensus 78 l~~--~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLK--GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEc--CC-CceeecCCCCHHHHHHHHHh
Confidence 995 34 34567888888877666654
No 44
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.64 E-value=6.2e-07 Score=74.07 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=65.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEE
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~ 255 (320)
.+++++|+|+++||.+|+.|. |.+.++-.+ ...|+.+|++.. ..++..|++.+.|+++++- .|+.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~~--~~la~~~~V~~iPTf~~fk--~G~~v~ 82 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDEV--PDFNKMYELYDPPTVMFFF--RNKHMK 82 (114)
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCCC--HHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence 689999999999999999994 555555543 346899998875 4688999999999999998 599887
Q ss_pred EEecC----------CChHHHHHHHHHH
Q 020843 256 SWCGM----------VQPESLLEDLVPF 273 (320)
Q Consensus 256 ~~~G~----------~~~~~fl~~L~~f 273 (320)
+..|. -+.++||+.+...
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 76553 2456777765543
No 45
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.63 E-value=3.6e-07 Score=71.51 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
.+|++++. +++.++|+|+++||..|+.+-. .| +.+.+.++. ++.+..+|.+. ...+++.|++..+|+++
T Consensus 4 ~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 4 SNFDDIVL----SNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATA--EKDLASRFGVSGFPTIK 74 (102)
T ss_pred hhHHHHhc----cCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccc--hHHHHHhCCCCcCCEEE
Confidence 35665553 7999999999999999999843 33 445666665 57777776543 46788999999999999
Q ss_pred EEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 245 VVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
++++ ++. +..+.|..+.+.+...|.+
T Consensus 75 ~~~~-~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 75 FFPK-GKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred EecC-CCc-ceeecCCCCHHHHHHHHHh
Confidence 9996 344 6678898888877666554
No 46
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.63 E-value=2e-07 Score=74.70 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=63.0
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEE
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~ 256 (320)
..++|++||+|+++||..|+.|...+ +.+.+..+ .+.++.+|.+. +-..+++.|++.++||+.+++. | .+.+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l---~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~~ 86 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHF---NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRVR 86 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHH---HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-ceeE
Confidence 46899999999999999999985321 22333333 46777887652 2346889999999999999985 5 6678
Q ss_pred EecCCChHHHHH
Q 020843 257 WCGMVQPESLLE 268 (320)
Q Consensus 257 ~~G~~~~~~fl~ 268 (320)
+.|..+.+.+++
T Consensus 87 ~~G~~~~~~l~~ 98 (100)
T cd02999 87 YNGTRTLDSLAA 98 (100)
T ss_pred ecCCCCHHHHHh
Confidence 889888877654
No 47
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.59 E-value=4.4e-07 Score=71.97 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=70.1
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+|++.+ .++|.+||+|+++||..|+.|...+ +.+.+.++.++.|..+|.+.. ..+++.|++..+|++.++
T Consensus 9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTW---REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred hhHHHHh----cCCCeEEEEEECCCChHHHHhHHHH---HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence 3566554 3569999999999999999986422 235555666788999998864 458899999999999988
Q ss_pred ecCCCceEEEEecCCChHHHHH
Q 020843 247 DPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~~fl~ 268 (320)
. .|+.+.++.|..+.+.+.+
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 80 P--SGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred c--CCCCcccCCCCCCHHHHHh
Confidence 4 5887878889888876653
No 48
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.59 E-value=5.3e-07 Score=72.47 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc------ceEEEEeecCChHHHHHHHHcCCCC
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLDS 239 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~------nFV~~q~d~~s~eg~~~~~~Y~v~~ 239 (320)
..+|++++ +.++++||+|+++||..|+.|...+ +.+.+.+++ ++.+..+|.+.. ..+++.|++.+
T Consensus 8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~ 78 (108)
T cd02996 8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIF---EEAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK 78 (108)
T ss_pred HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHH---HHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence 34666654 5578999999999999999997542 123333322 477888888765 35899999999
Q ss_pred CcEEEEEecCCCce-EEEEecCCChHHHHHH
Q 020843 240 IPVVLVVDPITGQK-MRSWCGMVQPESLLED 269 (320)
Q Consensus 240 ~P~i~Iidp~tG~~-v~~~~G~~~~~~fl~~ 269 (320)
+|++.++- .|+. .....|..+.+++++.
T Consensus 79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 79 YPTLKLFR--NGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred CCEEEEEe--CCcCcceecCCCCCHHHHHhh
Confidence 99999985 4764 4566788888776653
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.58 E-value=6.6e-07 Score=67.44 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=66.8
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCc
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~ 252 (320)
.+.++++.+||+|+++||..|+.+.+ .+.++.+ .++.++.++.+. ...+++.|++..+|+++++. .|+
T Consensus 5 ~~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~ 74 (93)
T cd02947 5 ELIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGK 74 (93)
T ss_pred HHHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCE
Confidence 33444599999999999999999864 4444444 678888888776 34578889999999999997 378
Q ss_pred eEEEEecCCChHHHHHHH
Q 020843 253 KMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 253 ~v~~~~G~~~~~~fl~~L 270 (320)
.+..+.|..+.+.+.+.|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 888899988877766554
No 50
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.58 E-value=5.5e-07 Score=74.26 Aligned_cols=95 Identities=16% Similarity=0.292 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--c-eEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--N-FIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--n-FV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
..|++++..+ ++|+|+|+|.++||.+|..|+ |.+.++-++ + .+|+.+|+++- ..+++.|.+...|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~md------p~l~ela~~~~~~~~f~kVDVDev--~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQLD------DILSKTSHDLSKMASIYLVDVDKV--PVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHHH------HHHHHHHHHccCceEEEEEecccc--HHHHHhcCceeCcEE
Confidence 4688888887 899999999999999999994 555555542 5 77999999853 458999999999999
Q ss_pred EEEecCCCceEE---------EEecCC-ChHHHHHHHHHH
Q 020843 244 LVVDPITGQKMR---------SWCGMV-QPESLLEDLVPF 273 (320)
Q Consensus 244 ~Iidp~tG~~v~---------~~~G~~-~~~~fl~~L~~f 273 (320)
+++- .|+-|+ +|.+.+ +.++||+.+...
T Consensus 73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9777 366553 345544 568888877654
No 51
>PTZ00051 thioredoxin; Provisional
Probab=98.57 E-value=7.6e-07 Score=69.81 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEec
Q 020843 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 171 ~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp 248 (320)
+.++...+++++++|+|+++||..|+.+.. .+.++.++ ++.|..+|.+. ...+++.|++.++|+++++.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVDE--LSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECcc--hHHHHHHCCCceeeEEEEEe-
Confidence 334555678999999999999999999953 33443333 46777777653 45789999999999988774
Q ss_pred CCCceEEEEecCCChHH
Q 020843 249 ITGQKMRSWCGMVQPES 265 (320)
Q Consensus 249 ~tG~~v~~~~G~~~~~~ 265 (320)
.|+.+.++.|. .+++
T Consensus 80 -~g~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 80 -NGSVVDTLLGA-NDEA 94 (98)
T ss_pred -CCeEEEEEeCC-CHHH
Confidence 69999999995 4443
No 52
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.55 E-value=2.4e-07 Score=75.63 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHhcCCeEEEEEeCCCCcchhhhhhccC----------------CCHHHHHHHhcceEEEEeecCChHHHHHHHHcC
Q 020843 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----------------ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 236 (320)
Q Consensus 173 ~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw----------------~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~ 236 (320)
...+...+|.++|+|+++||..|+.+.+.+- ..+.+.++++++-+-|.+..+ +...+++.|+
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence 3444456799999999999999998853321 134455555544343333322 2246888999
Q ss_pred CCCCcEEEEEecCCCceEEEEecCCChHHHHHHH
Q 020843 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 237 v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
+.++|++.|||+ .| .+....|..+++++.+.+
T Consensus 91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 999999999997 46 777889999999887654
No 53
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.53 E-value=1e-06 Score=69.63 Aligned_cols=92 Identities=12% Similarity=0.261 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
..+|++++ +++| ||+|+++||..|+.+... | +.+.+..+. ++.+.++|.+... .+++.|++.++|++.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~~~~~--~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-W--EEFADWSDDLGINVAKVDVTQEP--GLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-H--HHHHHhhccCCeEEEEEEccCCH--hHHHHcCCcccCEEE
Confidence 35677654 3555 699999999999999653 2 133333332 5888999887644 478899999999999
Q ss_pred EEecCCCceEEEEecCCChHHHHHHHH
Q 020843 245 VVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
++ + .|+ +.+..|..+.+++.+.|+
T Consensus 77 ~~-~-~g~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HA-K-DGV-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred Ee-C-CCC-EEEecCCCCHHHHHHHHh
Confidence 87 3 576 467789888887766554
No 54
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.52 E-value=9.1e-07 Score=78.43 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=70.6
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC-hH-HHH-------------------HHHHcC
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE-GKK-------------------VCTYYK 236 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s-~e-g~~-------------------~~~~Y~ 236 (320)
.++|+++|+|+++||.+|...- |.+.++-+.++.++.++.++ .+ ..+ +...|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 4699999999999999998874 44556555567777776543 22 222 334677
Q ss_pred CCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhcC
Q 020843 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 237 v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
+..+|+.+|||+ +|+.+.+..|..+.+++-+.++..+...
T Consensus 140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 888999999998 5998889999999988888888777543
No 55
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.51 E-value=7.3e-07 Score=70.12 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
.+|++.+ +..+|.+||+|+++||..|+.|...+ ..+.+.+++ ++.+..+|.+.. .++..|.+.++|++.
T Consensus 8 ~~f~~~i---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 8 KNFDEVV---LDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTIL 78 (104)
T ss_pred hhhHHHH---hCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEE
Confidence 3454444 34568999999999999999996544 556666655 699999998764 366778889999999
Q ss_pred EEecCCCc--eEEEEecCCChHHHHH
Q 020843 245 VVDPITGQ--KMRSWCGMVQPESLLE 268 (320)
Q Consensus 245 Iidp~tG~--~v~~~~G~~~~~~fl~ 268 (320)
++.+ |+ ......|..+.+.|++
T Consensus 79 ~~~~--~~~~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 79 FFPA--GDKSNPIKYEGDRTLEDLIK 102 (104)
T ss_pred EEcC--CCcCCceEccCCcCHHHHHh
Confidence 9974 44 4556788888777665
No 56
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.51 E-value=5.7e-07 Score=70.74 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=68.3
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
+|++ ..++.+|+++|+|+++||..|+.+... | ..+.+.++ .++.+..+|.+.+ ...+++.|++.++|++++
T Consensus 9 ~~~~---~~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 9 NFDK---VVGDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred cHHH---HhcCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEE
Confidence 4544 334567899999999999999999532 1 23333444 4688999987764 456888999999999999
Q ss_pred EecCCCceEEEEecCCChHHHHH
Q 020843 246 VDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 246 idp~tG~~v~~~~G~~~~~~fl~ 268 (320)
+.+ .|+....+.|..+.+++.+
T Consensus 82 ~~~-~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 82 FPK-GSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred EeC-CCCCccccCCccCHHHHHh
Confidence 996 4566667788888777654
No 57
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.50 E-value=1.6e-06 Score=68.07 Aligned_cols=90 Identities=17% Similarity=0.317 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
.+|++++. .+ ++||+|+++||..|+.+... | ..+.+.++. ++.+..+|.+... .+++.|++..+|++
T Consensus 8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~ 77 (102)
T cd03005 8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPT-W--EQLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL 77 (102)
T ss_pred HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHH-H--HHHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence 35666652 33 49999999999999999643 2 234444443 6888888876543 57889999999999
Q ss_pred EEEecCCCceEEEEecCCChHHHHH
Q 020843 244 LVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
+++. .|+.+.+..|..+.+++.+
T Consensus 78 ~~~~--~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 78 LLFK--DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEEe--CCCeeeEeeCCCCHHHHHh
Confidence 9995 4777778889888776543
No 58
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.49 E-value=1.6e-06 Score=76.62 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=70.2
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
..|.+++..+. .+++++|+|+.+||.+|+.|+ +.+.++.++ +..|+.++++.. .++..|++..+|+++
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 35555543321 245999999999999999995 455555543 477899998864 689999999999999
Q ss_pred EEecCCCceEEEEecCC---ChHHHHHHHHHHHhc
Q 020843 245 VVDPITGQKMRSWCGMV---QPESLLEDLVPFMDG 276 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~~---~~~~fl~~L~~fld~ 276 (320)
|+- .|+.+.++.|.. ..+-..+.|..+|.+
T Consensus 141 lyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 141 VYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 998 499998887752 123334556666544
No 59
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.41 E-value=2e-06 Score=74.59 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=63.3
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCCh-----------HHHHHHHHc---CCCCCcE
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYY---KLDSIPV 242 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~-----------eg~~~~~~Y---~v~~~P~ 242 (320)
...++.+|||+++||.+|+.. .|.+.++-++ +|.++.++.+.. .+......| ++..+|+
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred hcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 445777999999999999988 4666666654 455555555432 122233455 7889999
Q ss_pred EEEEecCCCceEEEEecCCChHHHHHHHHHH
Q 020843 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 243 i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
.+|||+..|..+.+..|.++.+++.+.+.+.
T Consensus 122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 9999986444455678999998887777654
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.40 E-value=4.3e-06 Score=78.90 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=71.6
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChH---------HHHHHHHcCCCCCcEEEE
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~e---------g~~~~~~Y~v~~~P~i~I 245 (320)
+.-.+|++||+|+++||..|+.+ .+.+.++-++ ++.++.++++... ...+++.|+|..+|+++|
T Consensus 162 ~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 162 KDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 33458999999999999999998 4667777664 4666666665421 134688999999999999
Q ss_pred EecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 246 idp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
+++.+|+......|.++.+++.+.+.....
T Consensus 236 v~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 236 ADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 998655544445699999999988887654
No 61
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.40 E-value=4e-06 Score=65.97 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=63.2
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEE
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~ 256 (320)
.+.+++++|+|+++||..|+.+...+ ..+.+.+...+.+..+|.+. ...+++.|++.++|+++++++. ......
T Consensus 15 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~-~~~~~~ 88 (103)
T cd03001 15 LNSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAG-KNSPQD 88 (103)
T ss_pred hcCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCC-Ccceee
Confidence 35578899999999999999995332 33444445566677777654 3468899999999999999852 244566
Q ss_pred EecCCChHHHHHH
Q 020843 257 WCGMVQPESLLED 269 (320)
Q Consensus 257 ~~G~~~~~~fl~~ 269 (320)
+.|..+.+.+.+-
T Consensus 89 ~~g~~~~~~l~~~ 101 (103)
T cd03001 89 YQGGRTAKAIVSA 101 (103)
T ss_pred cCCCCCHHHHHHH
Confidence 7888888776543
No 62
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.40 E-value=3.2e-06 Score=69.31 Aligned_cols=77 Identities=9% Similarity=0.223 Sum_probs=60.9
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCC
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 251 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG 251 (320)
..+.+++++++|+|+++||..|+.|. +.+.++.++ +..|+.+|.+... .+++.|++..+|+++++. .|
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~~~--~l~~~~~v~~vPt~l~fk--~G 85 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEKAP--FLVEKLNIKVLPTVILFK--NG 85 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEcccCH--HHHHHCCCccCCEEEEEE--CC
Confidence 33445679999999999999999995 555555543 4678888877643 588999999999999998 48
Q ss_pred ceEEEEecC
Q 020843 252 QKMRSWCGM 260 (320)
Q Consensus 252 ~~v~~~~G~ 260 (320)
+.+.++.|.
T Consensus 86 ~~v~~~~g~ 94 (113)
T cd02989 86 KTVDRIVGF 94 (113)
T ss_pred EEEEEEECc
Confidence 999888775
No 63
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.40 E-value=1.9e-06 Score=70.14 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
.|.+.+..+. .+++++|+|+++||.+|+.|. +.+.++..+ +..|+.+|.+.. .+++.|++..+|++++
T Consensus 13 ~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~------~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 13 EFLEEVTKAS-KGTRVVVHFYEPGFPRCKILD------SHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLLV 82 (113)
T ss_pred HHHHHHHccC-CCCEEEEEEeCCCCCcHHHHH------HHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEEE
Confidence 4544443211 259999999999999999995 444444443 356778887754 8899999999999999
Q ss_pred EecCCCceEEEEecC
Q 020843 246 VDPITGQKMRSWCGM 260 (320)
Q Consensus 246 idp~tG~~v~~~~G~ 260 (320)
+. .|+.+.++.|.
T Consensus 83 f~--~G~~v~~~~G~ 95 (113)
T cd02957 83 YK--NGELIDNIVGF 95 (113)
T ss_pred EE--CCEEEEEEecH
Confidence 97 49999988874
No 64
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.39 E-value=4.3e-06 Score=76.86 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=77.7
Q ss_pred cccccHHHHHHHHH-hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcE
Q 020843 164 MFNGSFEKAKDAAS-VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak-~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~ 242 (320)
+...+|++.....+ ..++.+||+|+++||..|+.+... | +.+.+-++..+.+..+|.+.. ..+++.|++.++|+
T Consensus 35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~--~~l~~~~~I~~~PT 109 (224)
T PTZ00443 35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRA--LNLAKRFAIKGYPT 109 (224)
T ss_pred CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCccc--HHHHHHcCCCcCCE
Confidence 34568888766553 357889999999999999999764 3 556666666666777776543 56899999999999
Q ss_pred EEEEecCCCceEEEEecCCChHHHHHHHHHHH
Q 020843 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (320)
Q Consensus 243 i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fl 274 (320)
+.+++ .|+.+....|..+.+++.+.+.+-+
T Consensus 110 l~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 110 LLLFD--KGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred EEEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 99999 4877766678788887666554444
No 65
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.38 E-value=4.7e-06 Score=69.41 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcc--hh--hhhhccCCCHHHHHHH-hcceEEEEeecCChHHHHHHHHcCCCCC
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFS--SH--MLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSI 240 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~--c~--~lnRdvw~n~~V~~~l-~~nFV~~q~d~~s~eg~~~~~~Y~v~~~ 240 (320)
..+|++.+ ++..++++|+|...||.+ |+ ++.+.+ .+.-.+++ .....|.++|++.. ..++++|++.++
T Consensus 16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d~~--~~La~~~~I~~i 88 (120)
T cd03065 16 EKNYKQVL---KKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSKKD--AKVAKKLGLDEE 88 (120)
T ss_pred hhhHHHHH---HhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCCCC--HHHHHHcCCccc
Confidence 35666654 456779999999999977 87 442221 13334444 34689999999865 579999999999
Q ss_pred cEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 241 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 241 P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
|||+++. .|+.+. +.|..+.+.+++.|.+.++
T Consensus 89 PTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 89 DSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred cEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 9999997 598876 8999999999988887653
No 66
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.34 E-value=8.5e-06 Score=67.83 Aligned_cols=92 Identities=9% Similarity=0.166 Sum_probs=65.9
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCCh---------HHHHHHHHcCC
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS---------EGKKVCTYYKL 237 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s~---------eg~~~~~~Y~v 237 (320)
+.++..+ .-+.++..+|||..+||++|+.| .|.+.++.+++ .-++.+|++.. +-..+.+.|++
T Consensus 12 t~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRALE-ALDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHHH-HHHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4444333 33668889999999999999999 57888888753 44666666532 34567777765
Q ss_pred ----CCCcEEEEEecCCCceEEEEecC-CChHHHHH
Q 020843 238 ----DSIPVVLVVDPITGQKMRSWCGM-VQPESLLE 268 (320)
Q Consensus 238 ----~~~P~i~Iidp~tG~~v~~~~G~-~~~~~fl~ 268 (320)
...|+++++. .|+.+.++.|. .+.+++..
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~l~~ 118 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQELQD 118 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHHHHH
Confidence 4599999998 59999999885 44554443
No 67
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.34 E-value=2e-06 Score=70.78 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCC---------------------hHHHHH
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDT---------------------SEGKKV 231 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s---------------------~eg~~~ 231 (320)
..+.-++|+++|+|+++||..|..+-. .+.++-++. +.++.++.+. .....+
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRV 92 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchH
Confidence 334445899999999999999998653 333333322 4444444211 122356
Q ss_pred HHHcCCCCCcEEEEEecCCCceEEEEecCCChHH
Q 020843 232 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPES 265 (320)
Q Consensus 232 ~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~ 265 (320)
++.|++..+|+.+|||+ .|+.+.++.|.++.+.
T Consensus 93 ~~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 93 GIDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 77789999999999997 5999999999887664
No 68
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.32 E-value=7.6e-06 Score=70.64 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=67.3
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH--------------------HHHHHHHcCC
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------GKKVCTYYKL 237 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e--------------------g~~~~~~Y~v 237 (320)
-++|+++|+|+++||..|+.....+ ++...++-+.++.++.++.+... ...+.+.|++
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 3689999999999999998764222 12222333344667777665432 2466778999
Q ss_pred CCCcEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 238 ~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
..+|+++|||+ .|+.+..+.|..+.+++.+.|.+
T Consensus 137 ~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 137 GPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 99999999997 59988888999998888777764
No 69
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.30 E-value=9.9e-06 Score=66.30 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=65.9
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCc
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~ 252 (320)
.+.+.++.++|+|+.+||.+|+.+.+ .+.++.. ...-+..+|.+. ...++..|++.+.|+++|.+. |.
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~------~l~~la~~~~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~--g~ 86 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQ------LLEELSELSDKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQD--GG 86 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHH------HHHHHHHhcCceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeC--Ce
Confidence 44566788999999999999998853 3333332 234577777764 457899999999999999984 33
Q ss_pred eEE--EEecCCChHHHHHHHHHHHh
Q 020843 253 KMR--SWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 253 ~v~--~~~G~~~~~~fl~~L~~fld 275 (320)
... ++.|..+.++|.+.|...++
T Consensus 87 ~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecceEEEEecCchHHHHHHHHHHHh
Confidence 322 56788788888887776654
No 70
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.26 E-value=2.1e-05 Score=64.73 Aligned_cols=100 Identities=10% Similarity=0.096 Sum_probs=76.6
Q ss_pred HhhhhhcC-CCccccccccHHHHHHHHHhcCCeEEEEEeCCC--CcchhhhhhccCCCHHHHHHHhc---ceEEEEeecC
Q 020843 151 DNLASLYR-PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD 224 (320)
Q Consensus 151 ~~l~~lf~-Ppf~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~--~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~ 224 (320)
++|.++-+ |..+. .+|++-. +.+..++|.|+.+| |++|..+. |.+.++.++ ...|+.+|.+
T Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~------P~leela~e~~~~v~f~kVdid 70 (111)
T cd02965 4 ARLQTRHGWPRVDA---ATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVA------VVLPELLKAFPGRFRAAVVGRA 70 (111)
T ss_pred HHHHHhcCCccccc---ccHHHHH----hCCCCEEEEecCCcccCcchhhhH------hHHHHHHHHCCCcEEEEEEECC
Confidence 35555443 44443 7888666 66778899999996 99999984 666666654 3568888888
Q ss_pred ChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 225 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 225 s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
... .++..|+|.++||++++. .|+.+.++.|..+-+++.
T Consensus 71 ~~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 71 DEQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence 765 799999999999999998 599999999988877764
No 71
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.26 E-value=6.1e-06 Score=68.38 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=52.1
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc------ceEEEEeecCChH----------------------HH
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSE----------------------GK 229 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~------nFV~~q~d~~s~e----------------------g~ 229 (320)
-++|++||+|+++||..|+.+. +.+.++.++ ++.++.++++..+ ..
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 4689999999999999999874 444444322 4555555554321 24
Q ss_pred HHHHHcCCCCCcEEEEEecCCCceEEE
Q 020843 230 KVCTYYKLDSIPVVLVVDPITGQKMRS 256 (320)
Q Consensus 230 ~~~~~Y~v~~~P~i~Iidp~tG~~v~~ 256 (320)
.+++.|++..+|+++|||+ +|+.+.+
T Consensus 90 ~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 6778999999999999997 5887644
No 72
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.22 E-value=1.1e-05 Score=69.85 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEEeecCChHHHHHHHHcCCCC---
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDS--- 239 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q~d~~s~eg~~~~~~Y~v~~--- 239 (320)
..|++.+.. ..++.++|+|+++||.+|+.|. +.+.++.+ .++.|..+|.+... .+++.|++..
T Consensus 36 ~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~------p~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~ 105 (152)
T cd02962 36 KTLEEELER--DKRVTWLVEFFTTWSPECVNFA------PVFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCC
Confidence 356555432 4578999999999999999995 44444443 35889999987653 5788899877
Q ss_pred ---CcEEEEEecCCCceEEEEec
Q 020843 240 ---IPVVLVVDPITGQKMRSWCG 259 (320)
Q Consensus 240 ---~P~i~Iidp~tG~~v~~~~G 259 (320)
+||++++. .|+.+.+..|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99999997 5999988876
No 73
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.20 E-value=1e-05 Score=81.58 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=80.4
Q ss_pred hhhhcCCCccc-cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHH
Q 020843 153 LASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKK 230 (320)
Q Consensus 153 l~~lf~Ppf~~-~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~ 230 (320)
.+++|..+..+ +...+|++.++. +..+|++||+|+++||..|+.|...+ +.+.+-++. .+.|..++++..+-..
T Consensus 344 ~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 344 VADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKEF 419 (463)
T ss_pred cccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccHH
Confidence 55788665444 345578887743 57899999999999999999997643 555555554 3678888887654333
Q ss_pred HHHHcCCCCCcEEEEEecCCCceEEEEe-cCCChHHHHHHHH
Q 020843 231 VCTYYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLV 271 (320)
Q Consensus 231 ~~~~Y~v~~~P~i~Iidp~tG~~v~~~~-G~~~~~~fl~~L~ 271 (320)
.++.|++.+||+|+|+... +.....+. |..+.+.|+..+.
T Consensus 420 ~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHHH
Confidence 4578999999999999863 22333454 4678888766554
No 74
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.19 E-value=1.4e-05 Score=62.53 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=57.4
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEEeecCCh--H-------------------HH
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTS--E-------------------GK 229 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q~d~~s~--e-------------------g~ 229 (320)
.+...+|+++|+|+..||..|+... +.+.++.+ .++.++.++.+.. + ..
T Consensus 14 ~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 14 LSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred hHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 3444589999999999999998753 44444443 3566777776652 2 25
Q ss_pred HHHHHcCCCCCcEEEEEecCCCceEEEEec
Q 020843 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCG 259 (320)
Q Consensus 230 ~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G 259 (320)
.+.+.|++..+|+++|+|| .|+.+.++.|
T Consensus 88 ~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred hHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 6778889999999999998 5888877655
No 75
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.15 E-value=1.5e-05 Score=65.20 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
.+|++... ..+|.++|+|+++||..|+.|... | +.+.+.+++ .+.|..+|.+......+++.|++..+|++
T Consensus 9 ~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 9 ASFNSALL---GSPSAWLVEFYASWCGHCRAFAPT-W--KKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred HhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHH-H--HHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 35665554 445899999999999999999653 3 235555543 36677777766667789999999999999
Q ss_pred EEEec
Q 020843 244 LVVDP 248 (320)
Q Consensus 244 ~Iidp 248 (320)
.++.+
T Consensus 83 ~lf~~ 87 (114)
T cd02992 83 RYFPP 87 (114)
T ss_pred EEECC
Confidence 99976
No 76
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.11 E-value=1.5e-05 Score=78.75 Aligned_cols=98 Identities=11% Similarity=0.213 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
.+|++++ +++|++||+|+++||..|+.+...+ ..+.+.++. ++.|..+|.+.. ..+++.|++.++|++
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEE--KDLAQKYGVSGYPTL 79 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCc--HHHHHhCCCccccEE
Confidence 3555554 4688999999999999999997543 334444442 378888887654 578999999999999
Q ss_pred EEEecCCCce-EEEEecCCChHHHHHHHHHHHh
Q 020843 244 LVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 244 ~Iidp~tG~~-v~~~~G~~~~~~fl~~L~~fld 275 (320)
.++. .|+. +..+.|..+.+.+.+.+.+.+.
T Consensus 80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9996 3666 6778898888888777776654
No 77
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.11 E-value=1.9e-05 Score=65.69 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=54.1
Q ss_pred cCCeEEEEEeC-------CCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChH-----HHHHHHHcCCC-CCcE
Q 020843 179 QDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE-----GKKVCTYYKLD-SIPV 242 (320)
Q Consensus 179 ~~K~LLV~l~~-------~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~e-----g~~~~~~Y~v~-~~P~ 242 (320)
.+|+++|+|++ +||.+|+.+ .|.|.++..+ +..|+.+|++... ...+...|++. .+|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~------~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKA------EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhh------chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 57999999999 999999998 4566666643 6789999987632 46788899998 9999
Q ss_pred EEEEecCCCceE
Q 020843 243 VLVVDPITGQKM 254 (320)
Q Consensus 243 i~Iidp~tG~~v 254 (320)
++++. +|+++
T Consensus 94 ~~~~~--~~~~l 103 (119)
T cd02952 94 LLRWK--TPQRL 103 (119)
T ss_pred EEEEc--CCcee
Confidence 99995 45543
No 78
>PTZ00102 disulphide isomerase; Provisional
Probab=98.09 E-value=1.9e-05 Score=79.09 Aligned_cols=98 Identities=9% Similarity=0.190 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh---cceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~---~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
.+|++++ ++++.+||+|+++||..|+.|...+- .+.+.++ .+++|..+|.+.. ..+++.|++.+||++
T Consensus 40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~~--~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 40 STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATEE--MELAQEFGVRGYPTI 110 (477)
T ss_pred hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCCC--HHHHHhcCCCcccEE
Confidence 4565544 56789999999999999999976532 3333343 3588888887653 468999999999999
Q ss_pred EEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.++.. |..+ ...|..+++.+++.|.+.+..
T Consensus 111 ~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 111 KFFNK--GNPV-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEEEC--CceE-EecCCCCHHHHHHHHHHhhCC
Confidence 99985 5555 788999999998888887653
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.08 E-value=2e-05 Score=80.52 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=62.0
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEE----------------------------eecCCh
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQ----------------------------VYDDTS 226 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q----------------------------~d~~s~ 226 (320)
++|++||+|+++||.+|..+- |.+.++.+ .++.++. +..+
T Consensus 55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D-- 126 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTD-- 126 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecc--
Confidence 799999999999999999863 33333322 1222222 2222
Q ss_pred HHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 227 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 227 eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
....+.+.|++..+|+++|||+ .|+.+.+..|.++.+++.+.|+.
T Consensus 127 ~~~~lak~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 127 NGGTLAQSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred ccHHHHHHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHHH
Confidence 2346778899999999999998 59999999999998877776663
No 80
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.08 E-value=1.9e-05 Score=62.27 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCC--CCcEEEEEecCCCceEEEE
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSW 257 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~--~~P~i~Iidp~tG~~v~~~ 257 (320)
+++++|.|.++||.+|+.+-..+ +.|.+-++..+.|..+|.+. ...+++.|++. ++|+++++...+|.+....
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 78999999999999999985332 34444455567888887766 45689999998 9999999997556665444
Q ss_pred ecCCChHHHHHHHHHH
Q 020843 258 CGMVQPESLLEDLVPF 273 (320)
Q Consensus 258 ~G~~~~~~fl~~L~~f 273 (320)
.|..+.+.+.+-|.++
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 4555676665555443
No 81
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.06 E-value=2.3e-05 Score=65.31 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHH---hc---ceEEEEeecCCh------------------
Q 020843 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---ST---NFIFWQVYDDTS------------------ 226 (320)
Q Consensus 171 ~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l---~~---nFV~~q~d~~s~------------------ 226 (320)
+-+..+.-++|.+||+|+++||..|+.+- +.+.++. ++ ++.++.++.+..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 34445555789999999999999999863 3443332 22 344444443321
Q ss_pred -----HHHHHHHHcCCCCCcEEEEEecCCCceEEE
Q 020843 227 -----EGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (320)
Q Consensus 227 -----eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~ 256 (320)
....+.+.|++..+|+++|||+ +|+.+.+
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 1345677899999999999997 5877654
No 82
>PTZ00102 disulphide isomerase; Provisional
Probab=98.03 E-value=1.4e-05 Score=80.04 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=77.0
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
..+|+++. .+.+|.+||+|+++||..|+.|.. +|. .+.+..+ .++++..+|.+..+ ..+..|++.++|++
T Consensus 364 ~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 364 GNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPTI 435 (477)
T ss_pred ccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCeE
Confidence 34666553 467899999999999999999953 332 3333343 35788888876543 35677899999999
Q ss_pred EEEecCCCceEEEEecCCChHHHHHHHHHHHhcCCCc
Q 020843 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPRE 280 (320)
Q Consensus 244 ~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~~~~d 280 (320)
.++.+ .++...++.|..+.+.+.+.|.+.+.....|
T Consensus 436 ~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~ 471 (477)
T PTZ00102 436 LFVKA-GERTPIPYEGERTVEGFKEFVNKHATNPFED 471 (477)
T ss_pred EEEEC-CCcceeEecCcCCHHHHHHHHHHcCCCCccc
Confidence 99986 3444456889999998888888877654433
No 83
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=4.1e-05 Score=84.55 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=71.9
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc----ceEEEEeec---CC---h-------------------HHH
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYD---DT---S-------------------EGK 229 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~----nFV~~q~d~---~s---~-------------------eg~ 229 (320)
++|++||+|+++||.+|.... |.+.++-++ +|+++.+.. +. . ...
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 699999999999999998763 555544432 377776641 11 0 123
Q ss_pred HHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhcCCC
Q 020843 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPR 279 (320)
Q Consensus 230 ~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~~~~ 279 (320)
.+.+.|++..+|+++|||+ .|+.+.++.|....+++.+.|...+..|..
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence 5667889999999999998 599999999999999988888888887653
No 84
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.01 E-value=1.8e-05 Score=68.07 Aligned_cols=73 Identities=12% Similarity=0.298 Sum_probs=50.4
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHH---hc--------ceEEEEeecCC--------------------
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---ST--------NFIFWQVYDDT-------------------- 225 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l---~~--------nFV~~q~d~~s-------------------- 225 (320)
.=++|+++|||.++||++|..+. |.+.++. ++ +|.++.++.+.
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 34689999999999999999874 3333221 11 24444444332
Q ss_pred ---hHHHHHHHHcCCCCCcEEEEEecCCCceEEE
Q 020843 226 ---SEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (320)
Q Consensus 226 ---~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~ 256 (320)
..+..+...|++.++|+.+|||+ .|+.+.+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence 22346778899999999999998 5988765
No 85
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.97 E-value=0.00012 Score=65.74 Aligned_cols=80 Identities=19% Similarity=0.386 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
.+|.+.+..| ..++|++|+|+.+||.+|+.|+ +.+.++-.+ ...|+.++++. .+..|++..+|+|+
T Consensus 90 ~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTll 157 (192)
T cd02988 90 PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEE
Confidence 3454444332 2347999999999999999995 455555543 35677887753 35789999999999
Q ss_pred EEecCCCceEEEEecC
Q 020843 245 VVDPITGQKMRSWCGM 260 (320)
Q Consensus 245 Iidp~tG~~v~~~~G~ 260 (320)
|+- .|+.+.++.|+
T Consensus 158 iyk--~G~~v~~ivG~ 171 (192)
T cd02988 158 VYR--NGDIVKQFIGL 171 (192)
T ss_pred EEE--CCEEEEEEeCc
Confidence 997 59999988874
No 86
>PLN02309 5'-adenylylsulfate reductase
Probab=97.94 E-value=6.1e-05 Score=75.95 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=75.5
Q ss_pred hhhhhcCCC-ccccccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh-cceEEEEeecCChHHH
Q 020843 152 NLASLYRPP-FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK 229 (320)
Q Consensus 152 ~l~~lf~Pp-f~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~-~nFV~~q~d~~s~eg~ 229 (320)
...++|.-+ ...+...+|++.++ .+..+|.+||+|+++||..|+.|... | +.+.+.++ .++.|..+|.+..+ .
T Consensus 337 ~~~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~--e~LA~~~~~~~V~f~kVD~d~~~-~ 411 (457)
T PLN02309 337 AVADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSGVKVAKFRADGDQ-K 411 (457)
T ss_pred ccccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCeEEEEEECCCcc-h
Confidence 345677422 22223335554443 34689999999999999999999754 2 24544454 35999999988333 2
Q ss_pred HHHH-HcCCCCCcEEEEEecCCCceEEEEec-CCChHHHHHHHHH
Q 020843 230 KVCT-YYKLDSIPVVLVVDPITGQKMRSWCG-MVQPESLLEDLVP 272 (320)
Q Consensus 230 ~~~~-~Y~v~~~P~i~Iidp~tG~~v~~~~G-~~~~~~fl~~L~~ 272 (320)
.+++ .|++.+||||+|+.+.+ .......| ..+.+.|+.-+..
T Consensus 412 ~la~~~~~I~~~PTil~f~~g~-~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 412 EFAKQELQLGSFPTILLFPKNS-SRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHHHhhCCCceeeEEEEEeCCC-CCeeecCCCCcCHHHHHHHHHH
Confidence 4554 69999999999998632 23334443 5788877776654
No 87
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=6.6e-05 Score=71.16 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
.-+|++.+.++ ...++|||+|+++||.+|..|-..+ +.+..-.+..|++.++|.+..-+ ++..|++.++|+++.
T Consensus 30 ~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~p~--vAaqfgiqsIPtV~a 103 (304)
T COG3118 30 EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAEPM--VAAQFGVQSIPTVYA 103 (304)
T ss_pred HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcchh--HHHHhCcCcCCeEEE
Confidence 34788777775 3457999999999999999995332 23333445689999999987644 778899999999998
Q ss_pred EecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 246 idp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
+- .|+.|-.+.|..+-+.+.+.|..++-
T Consensus 104 f~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 104 FK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred ee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 87 59999888887665555555555443
No 88
>PTZ00062 glutaredoxin; Provisional
Probab=97.91 E-value=0.00013 Score=66.26 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 169 f~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
-++..+..+.....++++|+++||.+|..|+ +.+.++.++ ++.|+.++.+ |.+...|+++++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~ 69 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFY 69 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEE
Confidence 3333333333336789999999999999994 555555554 6889999876 999999999999
Q ss_pred ecCCCceEEEEecCCChHHHHHHHHHHH
Q 020843 247 DPITGQKMRSWCGMVQPESLLEDLVPFM 274 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~~fl~~L~~fl 274 (320)
. .|+.+.++.|. +|.++...|....
T Consensus 70 ~--~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 70 Q--NSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred E--CCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 7 59999999884 4666665555443
No 89
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.90 E-value=0.00012 Score=65.15 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=67.8
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCCh-----------HHHHHHHHcCC--CCCcEEEEEecC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYYKL--DSIPVVLVVDPI 249 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~-----------eg~~~~~~Y~v--~~~P~i~Iidp~ 249 (320)
||+|+.+||+.|+.. .|.++++-++ .|.++.++++.. .+..+...|++ ..+|+.+|||+.
T Consensus 73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 788999999999998 4677777665 688888876632 23456778884 699999999985
Q ss_pred CCceE-EEEecCCChHHHHHHHHHHHhc
Q 020843 250 TGQKM-RSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 250 tG~~v-~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|+.+ ....|.++.+++.+.+.+.+..
T Consensus 147 -G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 147 -TLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -CcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 7765 4688999999998888888765
No 90
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.6e-05 Score=69.48 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=71.7
Q ss_pred HHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCC
Q 020843 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250 (320)
Q Consensus 173 ~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~t 250 (320)
.+.++.-.|.++|+|+..||.+|+.. .|.+.++-+. .+||+++|++.-+| .+..|+|...||+++.- +
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd~c~~--taa~~gV~amPTFiff~--n 83 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVDECRG--TAATNGVNAMPTFIFFR--N 83 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHHHhhc--hhhhcCcccCceEEEEe--c
Confidence 34566778999999999999999988 4666666664 59999999987655 56679999999999886 6
Q ss_pred CceEEEEecCCChHHHHHHHHHHHh
Q 020843 251 GQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 251 G~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
|.++.+++| -++..+-+++.+.++
T Consensus 84 g~kid~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 84 GVKIDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred CeEeeeecC-CCHHHHHHHHHHHhc
Confidence 899999888 455555555555443
No 91
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.88 E-value=0.00011 Score=57.28 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCC-----------------------hHHHHHHHH
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDT-----------------------SEGKKVCTY 234 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s-----------------------~eg~~~~~~ 234 (320)
||+++|+|++.||.+|...-..+ .++.+-++ .++.++.+..+. .....+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 79999999999999998875332 12333333 455555444332 224567778
Q ss_pred cCCCCCcEEEEEecCCCc
Q 020843 235 YKLDSIPVVLVVDPITGQ 252 (320)
Q Consensus 235 Y~v~~~P~i~Iidp~tG~ 252 (320)
|.+..+|+++|||| .|+
T Consensus 78 ~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 78 YGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp TT-TSSSEEEEEET-TSB
T ss_pred CCCCcCCEEEEECC-CCC
Confidence 88999999999997 575
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.77 E-value=0.0002 Score=64.87 Aligned_cols=89 Identities=10% Similarity=0.128 Sum_probs=64.3
Q ss_pred cCCeEEEEEeC---CCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCce
Q 020843 179 QDKWLLVNLQS---TKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (320)
Q Consensus 179 ~~K~LLV~l~~---~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~ 253 (320)
.++-|++ |++ +||.+|+.+. +.+.++..+ ..-+..++++..+...+++.|++..+|+++|++. |+.
T Consensus 19 ~~~~i~~-f~~~~a~wC~~C~~~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~~ 89 (215)
T TIGR02187 19 NPVEIVV-FTDNDKEGCQYCKETE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GKD 89 (215)
T ss_pred CCeEEEE-EcCCCCCCCCchHHHH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Cee
Confidence 3455555 555 8999999984 444444333 2334456667667889999999999999999983 777
Q ss_pred EE-EEecCCChHHHHHHHHHHHhc
Q 020843 254 MR-SWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 254 v~-~~~G~~~~~~fl~~L~~fld~ 276 (320)
+. ++.|..+.+++.+.|...++.
T Consensus 90 ~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 90 GGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHh
Confidence 74 788988888887777766643
No 93
>PHA02125 thioredoxin-like protein
Probab=97.77 E-value=0.00016 Score=54.69 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=50.8
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecC-CC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-VQ 262 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~-~~ 262 (320)
+|+|+++||.+|+.+.+-+ .+ + .|.++.+|.+. ...+++.|++.++|+++ .|+.+.++.|. .+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l------~~-~--~~~~~~vd~~~--~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPML------AN-V--EYTYVDVDTDE--GVELTAKHHIRSLPTLV-----NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHH------HH-H--hheEEeeeCCC--CHHHHHHcCCceeCeEE-----CCEEEEEEeCCCCc
Confidence 6899999999999997642 22 1 25566666544 56789999999999987 37778888885 23
Q ss_pred hHHHHHHH
Q 020843 263 PESLLEDL 270 (320)
Q Consensus 263 ~~~fl~~L 270 (320)
..++.+.|
T Consensus 66 ~~~l~~~~ 73 (75)
T PHA02125 66 VAELKEKL 73 (75)
T ss_pred HHHHHHHh
Confidence 35555544
No 94
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.72 E-value=0.00036 Score=60.54 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=66.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC--------h-HH------------------HHH
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--------S-EG------------------KKV 231 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s--------~-eg------------------~~~ 231 (320)
.+|++||+|+.+||+.|...-..+ ++...++=+.++.++.+..+. . +- ..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 689999999999999997543222 122222223467777776643 1 11 234
Q ss_pred HHHcCCCCCcEEEEEecCCCceEEEE------ec---CCChHHHHHHHHHHHhcCCCc
Q 020843 232 CTYYKLDSIPVVLVVDPITGQKMRSW------CG---MVQPESLLEDLVPFMDGGPRE 280 (320)
Q Consensus 232 ~~~Y~v~~~P~i~Iidp~tG~~v~~~------~G---~~~~~~fl~~L~~fld~~~~d 280 (320)
.+.|++...|+++|||| +|+.+..+ .+ ..+.+++.+.|...+...+..
T Consensus 102 ~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 102 AKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 55677888999999998 58877553 11 246688999999988876543
No 95
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.71 E-value=0.00032 Score=52.81 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=55.9
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHH---hcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l---~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~ 260 (320)
++-|+++||..|+.+. +.+.++. +.++-+..+|.+.. ...++.|++.++|+++| + |+ .++.|.
T Consensus 3 v~~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~-~---g~--~~~~G~ 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAK------RVVEEVAKEMGDAVEVEYINVMEN--PQKAMEYGIMAVPAIVI-N---GD--VEFIGA 68 (82)
T ss_pred EEEEECCCCcchHHHH------HHHHHHHHHhcCceEEEEEeCccC--HHHHHHcCCccCCEEEE-C---CE--EEEecC
Confidence 3457789999999985 3444443 34467788887643 35677899999999986 3 54 267898
Q ss_pred CChHHHHHHHHHHH
Q 020843 261 VQPESLLEDLVPFM 274 (320)
Q Consensus 261 ~~~~~fl~~L~~fl 274 (320)
.+++++.+.|...+
T Consensus 69 ~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 69 PTKEELVEAIKKRL 82 (82)
T ss_pred CCHHHHHHHHHhhC
Confidence 89999888887653
No 96
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.66 E-value=0.00073 Score=63.35 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCCh---------HHHHHHHHcCCCCCcEEEEEecC
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDPI 249 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~---------eg~~~~~~Y~v~~~P~i~Iidp~ 249 (320)
++|=||+|+...|..|+.| .+.|+.+-++ +|-.+.+++|.. -....++.+++..+|++++|+|.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 5799999999999999999 5777777775 577888887753 12446778899999999999998
Q ss_pred CCceEEEEecCCChHHHHHHHHHHHhcC
Q 020843 250 TGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 250 tG~~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
|++..-.-.|.++.+++++.+...+..+
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 8876656679999999999999998876
No 97
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.66 E-value=0.00039 Score=61.86 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=56.6
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh---cceEEEEeecCCh------------------HHHHHHHHc
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTS------------------EGKKVCTYY 235 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~---~nFV~~q~d~~s~------------------eg~~~~~~Y 235 (320)
..++|+++|+|+++||+.|+..- |.+.++.+ .++|++.. +++ ....+.+.|
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMISD--GTPAEHRRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEeC--CCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence 34689999999999999998763 33333332 23444431 111 123566778
Q ss_pred CCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 236 ~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
++..+|+.+|||+ .|+.+.+ |.....+-++.|.+.++.
T Consensus 143 ~v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 143 QVGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred cCCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 8899999999997 5877654 555554455555555543
No 98
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.65 E-value=0.0006 Score=61.38 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEEeec--------CC-hHHHHHHHHcCC-------
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD--------DT-SEGKKVCTYYKL------- 237 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q~d~--------~s-~eg~~~~~~Y~v------- 237 (320)
-++|++||+|+++||..|..-- +.+.++.+ ..+.++.++. ++ .+..++++.+++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeee
Confidence 3689999999999999997532 33333332 3577777753 22 235666665543
Q ss_pred -----------------------------CCCc---EEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 238 -----------------------------DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 238 -----------------------------~~~P---~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
..+| +.+|||+ .|+.+.++.|..+++++.+.|...+..
T Consensus 111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 0112 5779996 699999888988999888888888765
No 99
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.59 E-value=0.00041 Score=57.49 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=66.6
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeC--CCCc---chhhhhhccCCCHHHHHHHhcceEEEEeecCC---hHHHHHHHHcCC
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQS--TKEF---SSHMLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKL 237 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~--~~~f---~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s---~eg~~~~~~Y~v 237 (320)
..+|++++ ++++.+||-|+. +||. .|..|-... .+.- ...++-++|.+. .+...++++|+|
T Consensus 8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~------~~aa-~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESS------ASAT-DDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHH------Hhhc-CceEEEEEecccccchhhHHHHHHhCC
Confidence 35677755 568999999999 7777 676664221 1111 247889999865 455889999999
Q ss_pred C--CCcEEEEEecCCCc--eEEEEecC-CChHHHHHHHH
Q 020843 238 D--SIPVVLVVDPITGQ--KMRSWCGM-VQPESLLEDLV 271 (320)
Q Consensus 238 ~--~~P~i~Iidp~tG~--~v~~~~G~-~~~~~fl~~L~ 271 (320)
. +||+|.++.. |+ ......|. .+.+.++..|.
T Consensus 77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHHH
Confidence 8 9999999984 53 33456786 88888876554
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.57 E-value=0.00051 Score=55.01 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=44.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC-hHHHHHH-----------------HHcCCCCC
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVC-----------------TYYKLDSI 240 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s-~eg~~~~-----------------~~Y~v~~~ 240 (320)
++|+++|+|+++||..|+.....+ ..+.+.....+.++.+..++ .+..+++ +.|++..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 589999999999999999875332 12222223344444443222 2233333 45556678
Q ss_pred cEEEEEecCCCceEE
Q 020843 241 PVVLVVDPITGQKMR 255 (320)
Q Consensus 241 P~i~Iidp~tG~~v~ 255 (320)
|+.+|||+ .|+.+.
T Consensus 97 P~~~vid~-~G~v~~ 110 (114)
T cd02967 97 PYAVLLDE-AGVIAA 110 (114)
T ss_pred CeEEEECC-CCeEEe
Confidence 88888886 476553
No 101
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.55 E-value=0.00082 Score=62.72 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCCh---H------HHHHHHHcCCCCCcEEEEEecC
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---E------GKKVCTYYKLDSIPVVLVVDPI 249 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~---e------g~~~~~~Y~v~~~P~i~Iidp~ 249 (320)
++|-||+|+...|..|+.| .+.|+.+-+. +|-.+.+++|.. + ....++.+++..+|.+++|+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 4699999999999999999 5788888775 577888887741 1 1224467899999999999999
Q ss_pred CCceEEEEecCCChHHHHHHHHHHHhcCC
Q 020843 250 TGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (320)
Q Consensus 250 tG~~v~~~~G~~~~~~fl~~L~~fld~~~ 278 (320)
|++..-.-.|.++.+++.+.+......+.
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 88776666899999999999998877653
No 102
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.55 E-value=0.00032 Score=69.38 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=71.0
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~ 242 (320)
..+|++.. ...+|.+||+|+++||..|+.|...+ +.+.+.++. ++.++.+|.+..+ +.. |++..+|+
T Consensus 353 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~Pt 422 (462)
T TIGR01130 353 GKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFPT 422 (462)
T ss_pred CcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccCE
Confidence 45776654 45689999999999999999997643 556666666 7889999987655 333 88999999
Q ss_pred EEEEecCCCce--EEEEecCCChHHHHHHHHHH
Q 020843 243 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 243 i~Iidp~tG~~--v~~~~G~~~~~~fl~~L~~f 273 (320)
+.++.. |.+ ...+.|..+.+.+++.|.+.
T Consensus 423 ~~~~~~--~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 423 IKFVPA--GKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEEeC--CCCcCceEecCcCCHHHHHHHHHhc
Confidence 999974 433 24567888877766655443
No 103
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.49 E-value=0.00053 Score=56.48 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=51.6
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEEeecC------ChH-H-----------------
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD------TSE-G----------------- 228 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q~d~~------s~e-g----------------- 228 (320)
.-++|+++|+|++.||..|...- +.+.++.+ .++.++.+..+ +.+ .
T Consensus 20 ~~~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~ 93 (126)
T cd03012 20 QLRGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDN 93 (126)
T ss_pred HhCCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECC
Confidence 33689999999999999998763 33333322 34566655431 111 1
Q ss_pred -HHHHHHcCCCCCcEEEEEecCCCceEEEEecC
Q 020843 229 -KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 229 -~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~ 260 (320)
..+...|++..+|+.+|||+ .|+.+.++.|.
T Consensus 94 ~~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~ 125 (126)
T cd03012 94 DYATWRAYGNQYWPALYLIDP-TGNVRHVHFGE 125 (126)
T ss_pred chHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence 23445677888999999997 59888887763
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.48 E-value=0.0013 Score=61.05 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 239 ~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
..|+.+|||+ .|+.+.++.|.++++++...|++.|.
T Consensus 200 ~~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 200 WNFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cCceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 3589999997 69999999999999988888877763
No 105
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.48 E-value=0.0012 Score=60.40 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=69.3
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCCh---------HHHHHHHHcCCCCCcEEEEEec
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~---------eg~~~~~~Y~v~~~P~i~Iidp 248 (320)
.++|=||+|+..+|..|+.+ .+.|+.+-++ +|-.+.+++|.. ....+++.+++..+|++++|+|
T Consensus 119 a~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred hhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 47999999999999999999 4777777765 577888887742 1244777899999999999999
Q ss_pred CCCceEEEEecCCChHHHHHHH
Q 020843 249 ITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 249 ~tG~~v~~~~G~~~~~~fl~~L 270 (320)
.|++..-.-.|.++.+++++.+
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHhh
Confidence 8766665567999999998765
No 106
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.43 E-value=0.0016 Score=53.96 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=54.9
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-H------------------HHHHHHcCCC
Q 020843 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-G------------------KKVCTYYKLD 238 (320)
Q Consensus 179 ~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-g------------------~~~~~~Y~v~ 238 (320)
.+|+++|+|+ +.||+.|...-..+ ++...++-..++.++.+..++++ . .++.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4899999999 57899997653322 11112222234555555444322 2 2355566666
Q ss_pred CC---------cEEEEEecCCCceEEEEecCCChHHHHHH
Q 020843 239 SI---------PVVLVVDPITGQKMRSWCGMVQPESLLED 269 (320)
Q Consensus 239 ~~---------P~i~Iidp~tG~~v~~~~G~~~~~~fl~~ 269 (320)
.. |+++|||+ +|+.+.++.|....+.+-+.
T Consensus 100 ~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHH
Confidence 66 99999997 59999999998765555443
No 107
>PLN02412 probable glutathione peroxidase
Probab=97.43 E-value=0.0013 Score=57.45 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecC--------Ch-HHHHH-HHHcC------------
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--------TS-EGKKV-CTYYK------------ 236 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~--------s~-eg~~~-~~~Y~------------ 236 (320)
.+|++||+|+.+||++|..--..+ ++.-.++=..+|.++.+..+ +. +-.+. ++.|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 579999999999999998521111 11222222234666666542 11 11121 22221
Q ss_pred ----------------------CCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 237 ----------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 237 ----------------------v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
+...|+.+|||+ .|+.++++.|.++++++...+...|+.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 223589999997 599999999999999988888877753
No 108
>PRK15000 peroxidase; Provisional
Probab=97.39 E-value=0.0023 Score=57.67 Aligned_cols=121 Identities=7% Similarity=-0.026 Sum_probs=78.7
Q ss_pred cCCeEEEEEeCC-CCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHH--------------------------HHH
Q 020843 179 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (320)
Q Consensus 179 ~~K~LLV~l~~~-~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg--------------------------~~~ 231 (320)
++||++|+|+.. ||+.|..--..+ ++...++-+.++.++.++.++.+. ..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 689999999984 899998743332 234444445678888888776432 134
Q ss_pred HHHcCCC------CCcEEEEEecCCCceEEEEecC----CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCCcc
Q 020843 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKN 301 (320)
Q Consensus 232 ~~~Y~v~------~~P~i~Iidp~tG~~v~~~~G~----~~~~~fl~~L~~fld~~~~d~~~~~~~~~~~~~~~~~~~~~ 301 (320)
++.|++. .+|..+|||| .|.....+.|. .+.++++..|+.+.-.... ...++..=+|-...+.+++..
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~~~-~~~~p~~w~~g~~~~~~~~~~ 188 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEH-GDVCPAQWEKGKEGMNASPDG 188 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhhHHhc-CCCcCCCCCCCCceeccCHHH
Confidence 4456664 5899999998 48877766553 3667777777553221111 234555666777777777666
Q ss_pred ch
Q 020843 302 KG 303 (320)
Q Consensus 302 ~~ 303 (320)
++
T Consensus 189 ~~ 190 (200)
T PRK15000 189 VA 190 (200)
T ss_pred HH
Confidence 64
No 109
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.36 E-value=0.0011 Score=50.26 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=48.1
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCC
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~ 261 (320)
|.|+++||..|+.+. +.+.+++.+ .+.+..++ +.+ .+..|++.+.|+++| .|+.+ +.|..
T Consensus 3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~ 65 (76)
T TIGR00412 3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI 65 (76)
T ss_pred EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence 788999999999994 566666664 36666665 222 256799999999998 47776 77864
Q ss_pred -ChHHHHHHH
Q 020843 262 -QPESLLEDL 270 (320)
Q Consensus 262 -~~~~fl~~L 270 (320)
+.+++.+.|
T Consensus 66 ~~~~~l~~~l 75 (76)
T TIGR00412 66 PSKEEIKEIL 75 (76)
T ss_pred CCHHHHHHHh
Confidence 445554443
No 110
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.35 E-value=0.00027 Score=60.38 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEEecCCCceEEEEecCCChHHHHH
Q 020843 242 VVLVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
+.+|||+ .|+.++++.|.++++++..
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence 7899997 6999999999988876643
No 111
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.31 E-value=0.0015 Score=56.71 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred HHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecC--C---------------------h
Q 020843 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDD--T---------------------S 226 (320)
Q Consensus 173 ~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~--s---------------------~ 226 (320)
.....=+||.|.+||...||++|+.| |+.=..+-+.|+++ |-.+-++.| . +
T Consensus 26 ~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~ 102 (157)
T KOG2501|consen 26 LASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD 102 (157)
T ss_pred hHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH
Confidence 33334578999999999999999998 45555666667777 654444433 2 2
Q ss_pred HHHHHHHHcCCCCCcEEEEEecCCCceEEE-----E--ecCCChHHHHHHHH
Q 020843 227 EGKKVCTYYKLDSIPVVLVVDPITGQKMRS-----W--CGMVQPESLLEDLV 271 (320)
Q Consensus 227 eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~-----~--~G~~~~~~fl~~L~ 271 (320)
--+++.++|.+.+.|.+.||.| +|..|.. + .|..++...++...
T Consensus 103 ~~~~l~~ky~v~~iP~l~i~~~-dG~~v~~d~r~~v~~~g~~~~~a~~~ew~ 153 (157)
T KOG2501|consen 103 LIQKLSEKYEVKGIPALVILKP-DGTVVTEDARLLVQLGGSADPKALVDEWK 153 (157)
T ss_pred HHHHHHHhcccCcCceeEEecC-CCCEehHhhHHHHHhhcccCHHHHHHHHH
Confidence 2355677999999999999998 5876643 1 23356666655543
No 112
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.28 E-value=0.00077 Score=58.80 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=59.0
Q ss_pred HHhcCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH--------------------------H
Q 020843 176 ASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------G 228 (320)
Q Consensus 176 Ak~~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e--------------------------g 228 (320)
+.-.+|+++|+|+ ..||+.|..-.+.+ +....++=+.++.++.+..+..+ .
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 102 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPK 102 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCc
Confidence 3345899999999 78999998754432 22223333346666666655432 1
Q ss_pred HHHHHHcCCC------CCcEEEEEecCCCceEEEEecCC----ChHHHHHHHHH
Q 020843 229 KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (320)
Q Consensus 229 ~~~~~~Y~v~------~~P~i~Iidp~tG~~v~~~~G~~----~~~~fl~~L~~ 272 (320)
..+++.|++. ..|+.+|||+ .|..+..+.+.. +.++++..|..
T Consensus 103 ~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 103 KKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred hhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2344456653 4789999998 588887775543 45566666644
No 113
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.27 E-value=0.0047 Score=55.23 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=80.7
Q ss_pred CCccccc--cccHHHHHHHHHhcCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH--------
Q 020843 159 PPFHLMF--NGSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------- 227 (320)
Q Consensus 159 Ppf~~~~--~gsf~~A~~~Ak~~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------- 227 (320)
|+|.... .|++.+... +.-.+||++|+|+ ..||+.|..--..+ ++...++-+.++.++.++.++.+
T Consensus 9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~ 85 (187)
T PRK10382 9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS 85 (187)
T ss_pred CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHh
Confidence 5555432 345433221 2236899999999 89999998743322 23344444556777777766643
Q ss_pred ---------------HHHHHHHcCC----CCC--cEEEEEecCCCceEEEEec----CCChHHHHHHHHHHHhcCCCccc
Q 020843 228 ---------------GKKVCTYYKL----DSI--PVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGGPREQH 282 (320)
Q Consensus 228 ---------------g~~~~~~Y~v----~~~--P~i~Iidp~tG~~v~~~~G----~~~~~~fl~~L~~fld~~~~d~~ 282 (320)
...+++.|++ ..+ |..+|||| .|.....+.. ..+.++++..|..+--.-.....
T Consensus 86 ~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~ 164 (187)
T PRK10382 86 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGE 164 (187)
T ss_pred hccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCe
Confidence 2356677776 245 99999998 5887665432 14778888777544321111122
Q ss_pred ccCCCCCCCCCCCCCCCccc
Q 020843 283 AKVSHKRPRGSSTTPQQKNK 302 (320)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~ 302 (320)
.++-.=+|-.....+.+...
T Consensus 165 ~~p~~w~~~~~~~~~~~~~~ 184 (187)
T PRK10382 165 VCPAKWKEGEATLAPSLDLV 184 (187)
T ss_pred EeCCCCCcCCcceecCHHHh
Confidence 33334444555555554443
No 114
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.21 E-value=0.0013 Score=55.08 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=53.0
Q ss_pred HhcCCeEEEEEeCC-CCcchhhhhhccCCCHHHHHHH-hcceEEEEeecCCh-------------------HHHHHHHHc
Q 020843 177 SVQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTS-------------------EGKKVCTYY 235 (320)
Q Consensus 177 k~~~K~LLV~l~~~-~~f~c~~lnRdvw~n~~V~~~l-~~nFV~~q~d~~s~-------------------eg~~~~~~Y 235 (320)
.-++|+++|+|+.. ||+.|..--.. - ..+.+.. ..++.++.+..++. ....+.+.|
T Consensus 25 ~~~gk~~vv~f~~~~~Cp~C~~~~p~--l-~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 101 (146)
T PF08534_consen 25 DFKGKPVVVNFWASAWCPPCRKELPY--L-NELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKAL 101 (146)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHH--H-HHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHT
T ss_pred HhCCCeEEEEEEccCCCCcchhhhhh--H-HhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHh
Confidence 35789999999999 99999865420 0 1222222 23344444443321 223455566
Q ss_pred CCC---------CCcEEEEEecCCCceEEEEecCCC
Q 020843 236 KLD---------SIPVVLVVDPITGQKMRSWCGMVQ 262 (320)
Q Consensus 236 ~v~---------~~P~i~Iidp~tG~~v~~~~G~~~ 262 (320)
++. .+|+++|||+ .|+.+....|..+
T Consensus 102 ~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 102 GVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp TCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred CCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 776 8999999997 6988888777655
No 115
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.20 E-value=0.0028 Score=57.39 Aligned_cols=82 Identities=10% Similarity=0.107 Sum_probs=58.1
Q ss_pred hcCCeEEEE-EeCCCCcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceE
Q 020843 178 VQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (320)
Q Consensus 178 ~~~K~LLV~-l~~~~~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v 254 (320)
...+++.|. |+++||..|+.+. +.+.++..+ +..+..+|.+. ...++..|++.++|+++|.. .|+.
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~~--~~~~~~~~~V~~vPtl~i~~--~~~~- 198 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEANE--NPDLAEKYGVMSVPKIVINK--GVEE- 198 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCCC--CHHHHHHhCCccCCEEEEec--CCEE-
Confidence 345665555 8899999999885 344444443 45566666654 34688899999999999865 3543
Q ss_pred EEEecCCChHHHHHHHHH
Q 020843 255 RSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 255 ~~~~G~~~~~~fl~~L~~ 272 (320)
+.|..+.++|.+.|..
T Consensus 199 --~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 --FVGAYPEEQFLEYILS 214 (215)
T ss_pred --EECCCCHHHHHHHHHh
Confidence 7898888888887764
No 116
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.14 E-value=0.0059 Score=54.20 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred hcCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-----------------------HHHHHH
Q 020843 178 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-----------------------GKKVCT 233 (320)
Q Consensus 178 ~~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-----------------------g~~~~~ 233 (320)
-.+||++|+|+ ..||+.|..--..+ ++...++-+.++.++.+..++++ ...+++
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 36899999999 89999998743332 22233333456777777666532 124555
Q ss_pred HcCCC------CCcEEEEEecCCCceEEEEecC----CChHHHHHHHH
Q 020843 234 YYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 271 (320)
Q Consensus 234 ~Y~v~------~~P~i~Iidp~tG~~v~~~~G~----~~~~~fl~~L~ 271 (320)
.|++. ..|+.+|||+ .|.....+.+. ...++++..|.
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 66663 3599999998 58887766432 36677776663
No 117
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.10 E-value=0.0066 Score=51.54 Aligned_cols=94 Identities=9% Similarity=0.146 Sum_probs=54.1
Q ss_pred hcCCeEEEEEeCC-CCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-HH------------------HHHHHcCC
Q 020843 178 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-GK------------------KVCTYYKL 237 (320)
Q Consensus 178 ~~~K~LLV~l~~~-~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-g~------------------~~~~~Y~v 237 (320)
-.+|+++|+|+.. ||+.|......+ ++...++=++++.++.+..++++ .. .+++.|++
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 3578899999865 688886543221 12222222334555555554432 22 24445554
Q ss_pred CCC------------cEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 238 DSI------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 238 ~~~------------P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
... |+.+|||+ .|..+..+.|+...+ .++.+..+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~-~~~~~~~~~~ 153 (154)
T PRK09437 106 WGEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTSN-HHDVVLDYLK 153 (154)
T ss_pred CcccccccccccCcceEEEEECC-CCEEEEEEcCCCcch-hHHHHHHHHh
Confidence 322 78899998 598888998865444 4555555543
No 118
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.09 E-value=0.0064 Score=51.86 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhc--------------c-------C------CCHHHHHHHhc----ceEEEE-ee
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRD--------------T-------W------ANEAVSQTIST----NFIFWQ-VY 222 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRd--------------v-------w------~n~~V~~~l~~----nFV~~q-~d 222 (320)
.+.-++|+++|++.++||+.|..--.+ + + ..+.+++++++ +|-++. .+
T Consensus 17 l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~ 96 (153)
T TIGR02540 17 LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIK 96 (153)
T ss_pred HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEe
Confidence 334468999999999999999652210 0 0 01345555542 122221 01
Q ss_pred cCC---hHHHHHHHHcCCCCCcE----EEEEecCCCceEEEEecCCChHHHHHHHHHH
Q 020843 223 DDT---SEGKKVCTYYKLDSIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 223 ~~s---~eg~~~~~~Y~v~~~P~----i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
+.. ....++... +...+|+ ..|||+ .|+.+.++.|..+++++...|...
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 97 ILGSEAEPAFRFLVD-SSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred cCCCCCCcHHHHHHh-cCCCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 111 112222111 1235787 999997 699999999999999888877654
No 119
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.98 E-value=0.0059 Score=51.74 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 215 NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 215 nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.+.+.++|++.. ..++..|++.++|+++++. .|+.+.++.|..+.+++++.|.+++++
T Consensus 69 ~v~~akVDiD~~--~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 69 TWQVAIADLEQS--EAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ceEEEEEECCCC--HHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 377888888866 4588999999999999998 599999999999999999999999987
No 120
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=96.95 E-value=0.0015 Score=48.42 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=38.8
Q ss_pred cchHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
..+.++|..|... ||-..+-++..|+.+|||++.|+..|-+-
T Consensus 10 ~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 10 PEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3478899999999 99999999999999999999999999873
No 121
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=96.93 E-value=0.0011 Score=67.21 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC-hHHHH-HHH----HcCCCCCcEE
Q 020843 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKK-VCT----YYKLDSIPVV 243 (320)
Q Consensus 170 ~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s-~eg~~-~~~----~Y~v~~~P~i 243 (320)
++|.++|++++|+||+.+--..|..|++|...-|.|++..+++++|||-.++|-.+ |+--+ |+. .+.-.+.|.-
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms 181 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS 181 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence 78999999999999999998999999999999999999999999999999998655 44322 333 3334679999
Q ss_pred EEEecC
Q 020843 244 LVVDPI 249 (320)
Q Consensus 244 ~Iidp~ 249 (320)
+++.|.
T Consensus 182 V~LTPd 187 (786)
T KOG2244|consen 182 VFLTPD 187 (786)
T ss_pred EEeCCC
Confidence 999994
No 122
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.91 E-value=0.00064 Score=48.21 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~~~ 53 (320)
++.|.+|... ||-+.+-|+.+|+.++||++.|+..|......
T Consensus 1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 4689999999 99999999999999999999999999886543
No 123
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.84 E-value=0.01 Score=51.62 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=54.6
Q ss_pred hcCCeEEEEEeCCC-CcchhhhhhccCCCHHHHHHHh--cceEEEEeecCCh---------------------HHHHHHH
Q 020843 178 VQDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS---------------------EGKKVCT 233 (320)
Q Consensus 178 ~~~K~LLV~l~~~~-~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~---------------------eg~~~~~ 233 (320)
-++|+++|+|+..| |+.|..--. .+.++.+ .++.++.++.+++ .+..+++
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~------~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVR------KFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHH------HHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 35899999999998 999986321 2222222 2455555555432 2345666
Q ss_pred HcCCCCCc---------EEEEEecCCCceEEEEecC-----CChHHHHHHHH
Q 020843 234 YYKLDSIP---------VVLVVDPITGQKMRSWCGM-----VQPESLLEDLV 271 (320)
Q Consensus 234 ~Y~v~~~P---------~i~Iidp~tG~~v~~~~G~-----~~~~~fl~~L~ 271 (320)
.|++...| +.+|||+ +|..+..+.+. .+.++.++.|+
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred HhCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 67776556 8899996 68887776432 34566665553
No 124
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.80 E-value=0.012 Score=52.67 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=57.9
Q ss_pred cCCeEEEEEeC-CCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH--------------------------HHHH
Q 020843 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKKV 231 (320)
Q Consensus 179 ~~K~LLV~l~~-~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e--------------------------g~~~ 231 (320)
.+||++|+|+. .||+.|..--..+ +....++-+.++-++.++.++.+ ...+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 58999999995 6799887643321 23334444456777777666432 2356
Q ss_pred HHHcCCC------CCcEEEEEecCCCceEEEEecCC----ChHHHHHHHHH
Q 020843 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (320)
Q Consensus 232 ~~~Y~v~------~~P~i~Iidp~tG~~v~~~~G~~----~~~~fl~~L~~ 272 (320)
++.|++. .+|..+|||| .|.....+.+.. +.++++..|..
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 6777763 4799999998 588776665533 44555554443
No 125
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.71 E-value=0.021 Score=51.13 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEE------EEeecCCh--HHH------------------
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIF------WQVYDDTS--EGK------------------ 229 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~------~q~d~~s~--eg~------------------ 229 (320)
+.-.||..+||+...||.+|..= .|.+.++=..+|-+ ..++.++. ...
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXN------ASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhcc------chHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 33449999999999999999642 34444444446666 55555431 111
Q ss_pred -------HHHHHcCCCCCcEE-EEEecCCCceEEEEecCCChHHHHH
Q 020843 230 -------KVCTYYKLDSIPVV-LVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 230 -------~~~~~Y~v~~~P~i-~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
.+...|++..+|.- +|||+ .|+.+.+..|.++.+++-+
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH
Confidence 23346677888777 89997 6999999999988876643
No 126
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0094 Score=58.68 Aligned_cols=96 Identities=22% Similarity=0.220 Sum_probs=74.1
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCce
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~ 253 (320)
......++..+|.|+++||..|+.+-.... .+...++. +..-..++-.+-..+++.|++.+||++.++.+ |..
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~ 113 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKK 113 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCc
Confidence 344567889999999999999999965444 66667776 66666778888888999999999999999997 444
Q ss_pred EEEEecCCChHHHHHHHHHHHhc
Q 020843 254 MRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 254 v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.....|..+.+.+.+.+...++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 114 PIDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred eeeccCcccHHHHHHHHHHhhcc
Confidence 55566767777776666666554
No 127
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.65 E-value=0.02 Score=44.91 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=53.7
Q ss_pred HHHHhcCCe-EEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCc
Q 020843 174 DAASVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (320)
Q Consensus 174 ~~Ak~~~K~-LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~ 252 (320)
+.+++-+++ -+.-|+++||..|..+.+-+ +.+.+. ..++-+..+|++.. ..++..|++...|+++| +|+
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~~-~~~i~~~~vd~~~~--~e~a~~~~V~~vPt~vi----dG~ 74 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAVL-NPNIEHEMIDGALF--QDEVEERGIMSVPAIFL----NGE 74 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHHH-CCCceEEEEEhHhC--HHHHHHcCCccCCEEEE----CCE
Confidence 334444444 45556679999998875332 333322 22467777776644 45788999999999964 476
Q ss_pred eEEEEecCCChHHHHH
Q 020843 253 KMRSWCGMVQPESLLE 268 (320)
Q Consensus 253 ~v~~~~G~~~~~~fl~ 268 (320)
.+. .|..+.++++.
T Consensus 75 ~~~--~G~~~~~e~~~ 88 (89)
T cd03026 75 LFG--FGRMTLEEILA 88 (89)
T ss_pred EEE--eCCCCHHHHhh
Confidence 654 48777777664
No 128
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.62 E-value=0.004 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.3
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ 46 (320)
.+++|.+.+++ |-+.+.|++.|..++||++.|++.
T Consensus 2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 46889999999 999999999999999999999973
No 129
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0059 Score=62.01 Aligned_cols=98 Identities=11% Similarity=0.237 Sum_probs=72.2
Q ss_pred cccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCC
Q 020843 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSI 240 (320)
Q Consensus 164 ~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~ 240 (320)
+.+.+|++.+. .+.++||-|+++||.-|+.|--+. ..-...|.+ .--+-++|.+.. ..++++|.+.+|
T Consensus 30 Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~v~gy 100 (493)
T KOG0190|consen 30 LTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKVDATEE--SDLASKYEVRGY 100 (493)
T ss_pred EecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEeecchh--hhhHhhhcCCCC
Confidence 34568877764 589999999999999999995322 122334444 455777776655 889999999999
Q ss_pred cEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 241 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 241 P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
|++-|.- +|.......|..+.+..+..|..
T Consensus 101 PTlkiFr--nG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 101 PTLKIFR--NGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred CeEEEEe--cCCcceeccCcccHHHHHHHHHh
Confidence 9999986 68765667787777777666543
No 130
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.56 E-value=0.0057 Score=40.02 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~ 49 (320)
++.|++++++ |-+.+.|+.-|+.++||++.|++..|+
T Consensus 2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 4689999998 889999999999999999999987663
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.50 E-value=0.011 Score=47.72 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=48.1
Q ss_pred cCCeEEEEEeCC-CCcchhhhhhccCCCHHHHHHH---h-cceEEEEeecCChH-HH------------------HHHHH
Q 020843 179 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDDTSE-GK------------------KVCTY 234 (320)
Q Consensus 179 ~~K~LLV~l~~~-~~f~c~~lnRdvw~n~~V~~~l---~-~nFV~~q~d~~s~e-g~------------------~~~~~ 234 (320)
.+||++|+|+.. ||+.|..... .+.++. + .++-++.+..++.+ .. .+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELP------ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchh------HHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 679999999999 9999987643 333333 3 36777777776654 23 34445
Q ss_pred cCCC------CCcEEEEEecCCCceEE
Q 020843 235 YKLD------SIPVVLVVDPITGQKMR 255 (320)
Q Consensus 235 Y~v~------~~P~i~Iidp~tG~~v~ 255 (320)
|++. .+|++.|||+ .|..++
T Consensus 98 ~~~~~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp TTCEETTTSEESEEEEEEET-TSBEEE
T ss_pred cCCccccCCceEeEEEEECC-CCEEEe
Confidence 5665 7899999997 476553
No 132
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.50 E-value=0.03 Score=50.42 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=64.9
Q ss_pred hcCCeEEEE-EeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-------------------------HHHH
Q 020843 178 VQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------------------GKKV 231 (320)
Q Consensus 178 ~~~K~LLV~-l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------------------------g~~~ 231 (320)
-.+||++|+ +...||+.|..--..+ .+...++=+.++.++.++.++.+ ...+
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~i 102 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKEL 102 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHH
Confidence 368998774 6788999997532221 11122222345666666555421 1345
Q ss_pred HHHcCCC------CCcEEEEEecCCCceEEEE----ecCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCC
Q 020843 232 CTYYKLD------SIPVVLVVDPITGQKMRSW----CGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTP 297 (320)
Q Consensus 232 ~~~Y~v~------~~P~i~Iidp~tG~~v~~~----~G~~~~~~fl~~L~~fld~~~~d~~~~~~~~~~~~~~~~~ 297 (320)
++.|++. .+|+++|||| .|...... .+..+.++++..|+...-.... ..+.+..=+|-.....+
T Consensus 103 a~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~-~~~~p~~w~~g~~~~~~ 176 (202)
T PRK13190 103 AREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKALQVNWKR-KVATPANWQPGQEGIVP 176 (202)
T ss_pred HHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc-CCCcCCCCCcCCceecC
Confidence 5566663 4899999998 47665443 2235788888877665432111 22334344444444443
No 133
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.49 E-value=0.0058 Score=39.81 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff 48 (320)
++.|++++++ |-+.+.|++.|+.++||++.|++-.|
T Consensus 2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 5789999999 89999999999999999999987643
No 134
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.32 E-value=0.046 Score=48.27 Aligned_cols=38 Identities=18% Similarity=0.506 Sum_probs=30.3
Q ss_pred CCCCcE---EEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 237 LDSIPV---VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 237 v~~~P~---i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
+..+|+ .+|||+ .|..+.++.|.++++.+.+.|.+.+.
T Consensus 142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 346784 689997 59999999999999888888777663
No 135
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.29 E-value=0.031 Score=52.63 Aligned_cols=117 Identities=12% Similarity=0.013 Sum_probs=69.6
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH--------------------------HHHH
Q 020843 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKKV 231 (320)
Q Consensus 179 ~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e--------------------------g~~~ 231 (320)
.+||++++|+ ..||+.|..--..+ ++...++-+.++.++.+..+++. ..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 6789999999 78999998733221 23333444455666666666532 1346
Q ss_pred HHHcCCC-----CCcEEEEEecCCCceEEEEec----CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCCCCC
Q 020843 232 CTYYKLD-----SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQ 299 (320)
Q Consensus 232 ~~~Y~v~-----~~P~i~Iidp~tG~~v~~~~G----~~~~~~fl~~L~~fld~~~~d~~~~~~~~~~~~~~~~~~~ 299 (320)
++.|++. ..|..+|||| .|.....+.. ..+.++++..|+.+--.... ...++..=+|-..-+.+.+
T Consensus 175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~-g~~cPanW~~g~~~~~~~~ 249 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKT-GNVCPVNWKQGDQAMKPDS 249 (261)
T ss_pred HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhc-CCCcCCCCCcCCceecCCc
Confidence 6677763 4899999998 4887765521 24788888777644321111 2234444444444444433
No 136
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.10 E-value=0.046 Score=45.05 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=49.5
Q ss_pred cCCeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-HHH-------------------HHHHcCC
Q 020843 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-GKK-------------------VCTYYKL 237 (320)
Q Consensus 179 ~~K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-g~~-------------------~~~~Y~v 237 (320)
.+|+++|+|. +.||+.|...-..+ ++...++=..++.++.+..++++ ..+ +.+.|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6899999988 77999998764433 12222222345666666665433 233 3344444
Q ss_pred CCC---------cEEEEEecCCCceEEEEecCC
Q 020843 238 DSI---------PVVLVVDPITGQKMRSWCGMV 261 (320)
Q Consensus 238 ~~~---------P~i~Iidp~tG~~v~~~~G~~ 261 (320)
... |+++|||+ +|+.+.++.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 434 47889996 688888877754
No 137
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.09 E-value=0.022 Score=47.13 Aligned_cols=22 Identities=18% Similarity=-0.007 Sum_probs=18.7
Q ss_pred hcCCeEEEEEeCCCCcc-hhhhh
Q 020843 178 VQDKWLLVNLQSTKEFS-SHMLN 199 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~-c~~ln 199 (320)
-.+||++|+|...||.. |...-
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l 42 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTL 42 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHH
Confidence 36899999999999997 97654
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.03 E-value=0.026 Score=40.90 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=38.1
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHH--hcceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l--~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
++.|+++||+.|+.+.+ .+.++. ..++-+..+|+++. ..++..|++.++|+|+|
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ------AANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHH------HHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 45678899999988853 222222 23577778887654 34788899999999865
No 139
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.91 E-value=0.047 Score=45.52 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=50.2
Q ss_pred cCCeEEEEEeCCC-CcchhhhhhccCCCHHHHHHHhc--ceEEEEeecCChH-H--------------------HHHHHH
Q 020843 179 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSE-G--------------------KKVCTY 234 (320)
Q Consensus 179 ~~K~LLV~l~~~~-~f~c~~lnRdvw~n~~V~~~l~~--nFV~~q~d~~s~e-g--------------------~~~~~~ 234 (320)
.+|+++|+|+..| |+.|..-- +.+.++.++ ++.++.++.++.+ . .++++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQT------KRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHH------HHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 5899999999988 68897653 333333332 6778887776532 1 345555
Q ss_pred cCCCC------CcEEEEEecCCCceEEEEecC
Q 020843 235 YKLDS------IPVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 235 Y~v~~------~P~i~Iidp~tG~~v~~~~G~ 260 (320)
|++.. .|+.+|||+ .|..+..+.|.
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~ 129 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP 129 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence 65532 689999997 58887777653
No 140
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.88 E-value=0.082 Score=47.15 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh----cceEEEEeecC--------C-hHHHHHHH-HcCCCCC
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT-YYKLDSI 240 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~----~nFV~~q~d~~--------s-~eg~~~~~-~Y~v~~~ 240 (320)
.+.=.+|.+||++.+.||..|..+. .+.++.+ ..|.++.+..+ + .+..++++ .|++ .|
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~F 91 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TF 91 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-Cc
Confidence 3444689999999999999997653 3333332 36777777542 2 34566665 5654 46
Q ss_pred cEEEEEecCCCc
Q 020843 241 PVVLVVDPITGQ 252 (320)
Q Consensus 241 P~i~Iidp~tG~ 252 (320)
|.+.=+|- +|+
T Consensus 92 pv~~k~dv-nG~ 102 (183)
T PRK10606 92 PMFSKIEV-NGE 102 (183)
T ss_pred eeEEEEcc-CCC
Confidence 66655663 354
No 141
>PRK13189 peroxiredoxin; Provisional
Probab=95.87 E-value=0.15 Score=46.76 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=56.2
Q ss_pred cCCeEEE-EEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-------------------------HHHHH
Q 020843 179 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------------------GKKVC 232 (320)
Q Consensus 179 ~~K~LLV-~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------------------------g~~~~ 232 (320)
.+||++| ++-.+||+.|..--..+ +....++-+.++.++.++.++.. ...++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 5888776 55588999998643221 22333443455666666655432 13455
Q ss_pred HHcCCC-------CCcEEEEEecCCCceEEEEec----CCChHHHHHHHHHH
Q 020843 233 TYYKLD-------SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPF 273 (320)
Q Consensus 233 ~~Y~v~-------~~P~i~Iidp~tG~~v~~~~G----~~~~~~fl~~L~~f 273 (320)
+.|++. ..|.++|||| .|...+.+.+ ..+.++++..|+.+
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 566653 4799999998 5876655432 23567777777654
No 142
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.65 E-value=0.024 Score=38.13 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHH-HHHcCCCCCcEEEEEecC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV-CTYYKLDSIPVVLVVDPI 249 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~-~~~Y~v~~~P~i~Iidp~ 249 (320)
|+.++..||..|+.+...+-.. +..+.++.+..++.+....... ...+++..+|+++++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL----ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH----HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4678889999999885432211 4567789999999877654333 356888999999999973
No 143
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.56 E-value=0.051 Score=48.88 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=54.5
Q ss_pred CeEEE-EEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-------------------------HHHHHHH
Q 020843 181 KWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------------------GKKVCTY 234 (320)
Q Consensus 181 K~LLV-~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------------------------g~~~~~~ 234 (320)
||++| ++..+||+.|..--..+ ++...++=+.++.++.++.++.+ ...+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 78755 66688999998753322 12222333356777777766532 2356667
Q ss_pred cCCC--------CCcEEEEEecCCCceEEEEecC----CChHHHHHHHHHH
Q 020843 235 YKLD--------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPF 273 (320)
Q Consensus 235 Y~v~--------~~P~i~Iidp~tG~~v~~~~G~----~~~~~fl~~L~~f 273 (320)
|++. ..|.++|||| .|.....+.+. .+.++++..|+..
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7763 2457999998 48776665443 3556666666543
No 144
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.56 E-value=0.022 Score=54.55 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCC-CHHHHHHHhcceEEEEe-ecCChHHHHHHHHcCCCCCcEEEEEecCCCceEE-E
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWA-NEAVSQTISTNFIFWQV-YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-S 256 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~-n~~V~~~l~~nFV~~q~-d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~-~ 256 (320)
+..++|+|+++||.-+++|.--.-. ...+++-.-++=|.|.. |.+.. -.++++|.+..|||+=|+- +|+.++ .
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--~~ia~ky~I~KyPTlKvfr--nG~~~~rE 88 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--DDIADKYHINKYPTLKVFR--NGEMMKRE 88 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--hHHhhhhccccCceeeeee--ccchhhhh
Confidence 7889999999999999998532110 11222222234456654 44433 3488999999999999986 699887 4
Q ss_pred EecCCChHHHHHHHHHHHhc
Q 020843 257 WCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 257 ~~G~~~~~~fl~~L~~fld~ 276 (320)
+.|..+++.+++.+..-+..
T Consensus 89 YRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred hccchhHHHHHHHHHHHhcc
Confidence 67888999888877666543
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.40 E-value=0.11 Score=43.45 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=45.7
Q ss_pred HHhcC-CeEEEEEe-CCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH---------------------HHHHH
Q 020843 176 ASVQD-KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE---------------------GKKVC 232 (320)
Q Consensus 176 Ak~~~-K~LLV~l~-~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e---------------------g~~~~ 232 (320)
+.-.+ |+++|+|+ ..||..|..--..+ .....++-+.++.++.+..++++ ..++.
T Consensus 23 ~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (149)
T cd03018 23 SEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA 100 (149)
T ss_pred HHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH
Confidence 33345 88888887 88999997543222 11111111234444444443321 13455
Q ss_pred HHcCCC----CC--cEEEEEecCCCceEEEEecC
Q 020843 233 TYYKLD----SI--PVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 233 ~~Y~v~----~~--P~i~Iidp~tG~~v~~~~G~ 260 (320)
+.|++. .+ |+.+|||+ .|+.+..+.|.
T Consensus 101 ~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 101 KAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred HHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 556654 22 38899997 58888777664
No 146
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.32 E-value=0.11 Score=47.33 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=60.2
Q ss_pred cCCeEEE-EEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHH-------------------------HHHH
Q 020843 179 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 232 (320)
Q Consensus 179 ~~K~LLV-~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg-------------------------~~~~ 232 (320)
.+||++| ++..+||+.|..--..+ ++...++-+.++.++.++.++... .+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 5789887 66688999998754332 233445555677788887776432 2455
Q ss_pred HHcCCC-------CCcEEEEEecCCCceEEEEecC----CChHHHHHHHHHH
Q 020843 233 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPF 273 (320)
Q Consensus 233 ~~Y~v~-------~~P~i~Iidp~tG~~v~~~~G~----~~~~~fl~~L~~f 273 (320)
+.|++. ..|..+|||| .|.....+.+. .+.+++|..|+..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 566652 3799999998 48766554322 3678888777654
No 147
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.86 E-value=0.17 Score=38.13 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=42.0
Q ss_pred eCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEec-CCChHHH
Q 020843 188 QSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPESL 266 (320)
Q Consensus 188 ~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G-~~~~~~f 266 (320)
.+++|+.|..+- ..+.+.+.++=+-+.+..- .+..++ ..|++.+.|++ +|| |+. .+.| ..+.+++
T Consensus 6 ~~~~C~~C~~~~------~~~~~~~~~~~i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~~p~~~el 71 (76)
T PF13192_consen 6 FSPGCPYCPELV------QLLKEAAEELGIEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGRVPSKEEL 71 (76)
T ss_dssp ECSSCTTHHHHH------HHHHHHHHHTTEEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEE--EEESS--HHHHH
T ss_pred eCCCCCCcHHHH------HHHHHHHHhcCCeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEE--EEEecCCCHHHH
Confidence 567799999774 4455555543244444332 445555 89999999999 555 654 3678 4566666
Q ss_pred HHHH
Q 020843 267 LEDL 270 (320)
Q Consensus 267 l~~L 270 (320)
.+.|
T Consensus 72 ~~~l 75 (76)
T PF13192_consen 72 KELL 75 (76)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 148
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.73 E-value=0.078 Score=44.16 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCC-------CCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHH-----HHHH
Q 020843 168 SFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-----KKVC 232 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~-------~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg-----~~~~ 232 (320)
.|.++++.....++.|+|+|.+. ||++|..- .|.|.+.+.. +.+|+.+.+-+..- ..+-
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR 80 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR 80 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce
Confidence 45566666667889999999965 99999765 4677776653 67777777654332 1233
Q ss_pred H--HcCCCCCcEEEEEe
Q 020843 233 T--YYKLDSIPVVLVVD 247 (320)
Q Consensus 233 ~--~Y~v~~~P~i~Iid 247 (320)
+ .+++..+||++-..
T Consensus 81 ~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 81 TDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp H--CC---SSSEEEECT
T ss_pred EcceeeeeecceEEEEC
Confidence 3 68899999999887
No 149
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.71 E-value=0.29 Score=40.45 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=35.6
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHH-HHHHHcCCCCCcEEEEEec
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-KVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~-~~~~~Y~v~~~P~i~Iidp 248 (320)
++.||+++...||+.|+.--..+ ++...++-..++.++.+..++.+.. .+.+.+ .+|+-++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~---~~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKLEAFDKGK---FLPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc---CCCCeEEECC
Confidence 34455555689999998764332 1222223335788888887765532 344433 2334445555
No 150
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.65 E-value=0.23 Score=45.34 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=54.7
Q ss_pred cCCeE-EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH-------------------------HHHHH
Q 020843 179 QDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------------------GKKVC 232 (320)
Q Consensus 179 ~~K~L-LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------------------------g~~~~ 232 (320)
.+||+ |+++-.+||+.|..--..+ .....++-+.++.++.++.++.+ ..+++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 57896 5677788999997632211 11222333345666666666532 12455
Q ss_pred HHcCCC-------CCcEEEEEecCCCceEEEEecC----CChHHHHHHHHH
Q 020843 233 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (320)
Q Consensus 233 ~~Y~v~-------~~P~i~Iidp~tG~~v~~~~G~----~~~~~fl~~L~~ 272 (320)
+.|++. ..|+++|||| .|.....+... ...++++..|..
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 567652 5799999998 48776554211 356777776654
No 151
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.53 E-value=0.17 Score=38.22 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcC--CCCCcEEEEEecCCCceE
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYK--LDSIPVVLVVDPITGQKM 254 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~--v~~~P~i~Iidp~tG~~v 254 (320)
++.++|+|+++||..|+.+ .+.+.++.++ ...+..++..+ ....+...|. +..+|.+.+... |..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~~--~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFKD--GKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEeC--cchh
Confidence 8999999889999999999 5666666654 35677777652 3445566677 778898875553 3334
Q ss_pred EEEec--CCChHHHHHHHH
Q 020843 255 RSWCG--MVQPESLLEDLV 271 (320)
Q Consensus 255 ~~~~G--~~~~~~fl~~L~ 271 (320)
....| ..+...++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~ 121 (127)
T COG0526 103 DRLVGGKVLPKEALIDALG 121 (127)
T ss_pred hhhhhcccCCHHHHHHHhc
Confidence 33344 344444444443
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.48 E-value=0.27 Score=35.25 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=43.7
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCC--hHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s--~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~ 260 (320)
+.-|+.+||..|+.+. .++++ +.-+..+|++. .....+.+.+++.++|++.+ + |+. +.|
T Consensus 2 i~lf~~~~C~~C~~~~----------~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g- 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAK----------EYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVG- 63 (74)
T ss_pred EEEEcCCCChhHHHHH----------HHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---Eee-
Confidence 3456778999998763 33332 34455566654 33566888899999999986 2 443 667
Q ss_pred CChHHHHHH
Q 020843 261 VQPESLLED 269 (320)
Q Consensus 261 ~~~~~fl~~ 269 (320)
.+++.+.+.
T Consensus 64 ~~~~~i~~~ 72 (74)
T TIGR02196 64 FDPEKLDQL 72 (74)
T ss_pred CCHHHHHHH
Confidence 466655443
No 153
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.15 E-value=0.2 Score=47.28 Aligned_cols=112 Identities=15% Similarity=0.259 Sum_probs=69.5
Q ss_pred CCCccccccc----cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHH
Q 020843 158 RPPFHLMFNG----SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCT 233 (320)
Q Consensus 158 ~Ppf~~~~~g----sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~ 233 (320)
.|-|..++.- .|-++...+ ..+.||+|.||.+.+..|..||.-+ .....+|..-.||=..+.... ++.
T Consensus 121 ~~~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~~-----~~~ 192 (265)
T PF02114_consen 121 GPRFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKCP-----ASE 192 (265)
T ss_dssp -----SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGCC-----TTT
T ss_pred CCcCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhccC-----ccc
Confidence 3555554322 344444332 2356999999999999999998654 355566666677766654321 566
Q ss_pred HcCCCCCcEEEEEecCCCceEEEEecC---CChHHHHHHHHHHHhcCCC
Q 020843 234 YYKLDSIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVPFMDGGPR 279 (320)
Q Consensus 234 ~Y~v~~~P~i~Iidp~tG~~v~~~~G~---~~~~~fl~~L~~fld~~~~ 279 (320)
.|....+|+|+|.- .|..+.++.|. ..-+-+...|..||.++..
T Consensus 193 ~f~~~~LPtllvYk--~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 193 NFPDKNLPTLLVYK--NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TS-TTC-SEEEEEE--TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred CCcccCCCEEEEEE--CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 78889999999998 59999988774 3445567789999988764
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.00 E-value=0.29 Score=45.71 Aligned_cols=92 Identities=11% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-----ceEEEEeec-C---------------------
Q 020843 172 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYD-D--------------------- 224 (320)
Q Consensus 172 A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-----nFV~~q~d~-~--------------------- 224 (320)
++.......|..++.|.++.|+.|++|..+ +.++++. .++.+.+-. +
T Consensus 109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~ 182 (251)
T PRK11657 109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY 182 (251)
T ss_pred CccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence 445555677888999999999999999543 3334332 122221100 0
Q ss_pred ---------------Ch-------HHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHH
Q 020843 225 ---------------TS-------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 225 ---------------s~-------eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
+. +..++++.+++.++|+|++.|. +| .+..+.|+.++++|.+.|.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CC-CEEEecCCCCHHHHHHHhC
Confidence 11 1234666778899999999996 46 3445789999998877663
No 155
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.86 E-value=0.55 Score=40.24 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=66.7
Q ss_pred hHHhhhhhcCCCccccccccHHHHHHHHHhcCCe-EEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChH
Q 020843 149 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE 227 (320)
Q Consensus 149 ~~~~l~~lf~Ppf~~~~~gsf~~A~~~Ak~~~K~-LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e 227 (320)
-.+.+..--.|.+..+...++ .... ..++. +++.|........+.+...+ ..+..-.+..++|.-+|.+ .
T Consensus 67 l~~fI~~~~~P~v~~~t~~n~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~ 137 (184)
T PF13848_consen 67 LKKFIKKNSFPLVPELTPENF---EKLF-SSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--D 137 (184)
T ss_dssp HHHHHHHHSSTSCEEESTTHH---HHHH-STSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--T
T ss_pred HHHHHHHhccccccccchhhH---HHHh-cCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--H
Confidence 345555555677666443333 3333 33544 66666554444444443222 3444444667888888877 3
Q ss_pred HHHHHHHcCCC--CCcEEEEEecCCCceEEEEecCCChHHHHHHH
Q 020843 228 GKKVCTYYKLD--SIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 228 g~~~~~~Y~v~--~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
..++++.|++. .+|.++|+++.+++.-..-.|.++++.+.+-|
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl 182 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFL 182 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHh
Confidence 34577889986 89999999987776432226777776555443
No 156
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.11 Score=53.07 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCC
Q 020843 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250 (320)
Q Consensus 173 ~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~t 250 (320)
...+..++|=+||-||++||.-|+.|.-- =+++.+.++ ++-|+-++|.+.-|-.. ..++.||||++.-.-.
T Consensus 377 d~iv~de~KdVLvEfyAPWCgHCk~laP~---~eeLAe~~~~~~~vviAKmDaTaNd~~~----~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 377 DDIVLDEGKDVLVEFYAPWCGHCKALAPI---YEELAEKYKDDENVVIAKMDATANDVPS----LKVDGFPTILFFPAGH 449 (493)
T ss_pred HHHhhccccceEEEEcCcccchhhhhhhH---HHHHHHHhcCCCCcEEEEeccccccCcc----ccccccceEEEecCCC
Confidence 34677889999999999999999999421 245666665 47899999988766333 3467799999887422
Q ss_pred CceEEEEecCCChHHHHHHHHHHHhcCCC
Q 020843 251 GQKMRSWCGMVQPESLLEDLVPFMDGGPR 279 (320)
Q Consensus 251 G~~v~~~~G~~~~~~fl~~L~~fld~~~~ 279 (320)
.+......|..+ ++.|..|++.+..
T Consensus 450 k~~pv~y~g~R~----le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 450 KSNPVIYNGDRT----LEDLKKFIKKSAT 474 (493)
T ss_pred CCCCcccCCCcc----hHHHHhhhccCCC
Confidence 223444455444 4556667766554
No 157
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.60 E-value=0.32 Score=44.90 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=57.8
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc----ceEEEEee-cCC-----------------------
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVY-DDT----------------------- 225 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~----nFV~~q~d-~~s----------------------- 225 (320)
.....++|..++.|.++.|+.|+++. +++.++.+. .|+.|... ..+
T Consensus 101 ~~g~~~~k~~I~vFtDp~CpyCkkl~------~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~ 174 (232)
T PRK10877 101 VYKAPQEKHVITVFTDITCGYCHKLH------EQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAM 174 (232)
T ss_pred EecCCCCCEEEEEEECCCChHHHHHH------HHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHH
Confidence 33445788899999999999999996 445565542 22223321 000
Q ss_pred --------------hHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 226 --------------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 226 --------------~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
.+-.++++.+++.++|+|++-| |+. +.|+.++++|.+.|.+
T Consensus 175 ~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~---G~~---~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 175 KGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSN---GTL---VPGYQGPKEMKAFLDE 229 (232)
T ss_pred cCCCCCcccccchHHHhHHHHHHcCCccccEEEEcC---CeE---eeCCCCHHHHHHHHHH
Confidence 1234556677889999999644 654 4899999988777764
No 158
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=93.43 E-value=0.19 Score=48.28 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEee-cCChHHHHHHHHcCCCCCcEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY-DDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d-~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
.++++-...-|.++-| +|+|+.+||.-|++|. -|| .+|.--++.-=.-+++- .+-..=..+++.+.+.+||+|.+
T Consensus 31 eDLddkFkdnkdddiW-~VdFYAPWC~HCKkLe-PiW--deVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIW-FVDFYAPWCAHCKKLE-PIW--DEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF 106 (468)
T ss_pred hhhhHHhhhcccCCeE-EEEeechhhhhccccc-chh--HHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence 4555555566666666 7999999999999995 456 34544454322223332 22233456888999999999999
Q ss_pred EecCCCceEEEEecCCChHHHHHHHHHH
Q 020843 246 VDPITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 246 idp~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
+- |-....+.|....+++++-.+..
T Consensus 107 ~k---gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 107 FK---GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred ec---CCeeeecCCCccHHHHHHHHHhc
Confidence 86 33445566777777766654443
No 159
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.32 E-value=0.17 Score=42.47 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCChHHHHHHHHc---CCCCCcEEEEEecCC
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPIT 250 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s~eg~~~~~~Y---~v~~~P~i~Iidp~t 250 (320)
.+...++.-++.|..+||++|...- |.+.++...+ =|=+.+-.. .+...+...| +....|+++|+|. .
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~r-d~~~el~~~~lt~g~~~IP~~I~~d~-~ 107 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRIILR-DENKELMDQYLTNGGRSIPTFIFLDK-D 107 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-H-HHHHHHTTTTTT-SS--SSEEEEE-T-T
T ss_pred HHhcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEe-cCChhHHHHHHhCCCeecCEEEEEcC-C
Confidence 3344566677788899999998873 7888888765 343333222 2344444544 3578999999996 4
Q ss_pred CceEEEEec
Q 020843 251 GQKMRSWCG 259 (320)
Q Consensus 251 G~~v~~~~G 259 (320)
|+.+.+|..
T Consensus 108 ~~~lg~wge 116 (129)
T PF14595_consen 108 GKELGRWGE 116 (129)
T ss_dssp --EEEEEES
T ss_pred CCEeEEEcC
Confidence 999999854
No 160
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=92.93 E-value=0.038 Score=54.21 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=38.7
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
..+.|++|+++ ||.++..|+.||+.++||++.|...+++..
T Consensus 4 p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 4 PLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred chhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence 57899999999 999999999999999999999999999864
No 161
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.25 Score=48.64 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=68.2
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHh--cceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCC
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 251 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~--~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG 251 (320)
...+..++..||.|+.+||..|+.|- -.| ..+...++ .+.-++.++.+ ....+++.+.+..||++.++-+ |
T Consensus 156 ~~~~~~~~~~lv~f~aPwc~~ck~l~-~~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~--~ 228 (383)
T KOG0191|consen 156 ETVKDSDADWLVEFYAPWCGHCKKLA-PEW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP--G 228 (383)
T ss_pred hhhhccCcceEEEEeccccHHhhhcC-hHH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC--C
Confidence 34556677788888999999999993 222 23333343 56666667666 6677888999999999977765 3
Q ss_pred ce-EEEEecCCChHHHHHHHHHHHhcC
Q 020843 252 QK-MRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 252 ~~-v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
.. .....|..+.+.+++-+.....+.
T Consensus 229 ~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 229 EEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred CcccccccccccHHHHHHHHHhhcCCC
Confidence 44 444566778888888777776663
No 162
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.011 Score=57.27 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=66.2
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh------HHHHHHHHcCCC--CCcEEEEE
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS------EGKKVCTYYKLD--SIPVVLVV 246 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~------eg~~~~~~Y~v~--~~P~i~Ii 246 (320)
.++-.++|+.|..+.+-.+.|++|++..|..+.++.++.+++.+|++...++ ++++.+..|... ..++..++
T Consensus 6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~ 85 (356)
T KOG1364|consen 6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSIL 85 (356)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCccccc
Confidence 3455678999999888899999999999999999999999999999987432 355665555544 89999999
Q ss_pred ecCCCceE
Q 020843 247 DPITGQKM 254 (320)
Q Consensus 247 dp~tG~~v 254 (320)
+|++|..-
T Consensus 86 ~p~~~~~~ 93 (356)
T KOG1364|consen 86 DPSENQDD 93 (356)
T ss_pred Ccccccch
Confidence 99887654
No 163
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.08 E-value=0.36 Score=32.40 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~ 49 (320)
++.|.+..++--.-+.+.-+..|++++||+|.||+..++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567888888878889999999999999999999998775
No 164
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=91.70 E-value=0.65 Score=34.61 Aligned_cols=57 Identities=7% Similarity=0.020 Sum_probs=35.3
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh--HH-HHHHHHcCCCCCcEEEEEe
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EG-KKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~--eg-~~~~~~Y~v~~~P~i~Iid 247 (320)
+.+..+||+.|+.+.+- |..-. ++..|.++.++.+.. +- ..+.+.++..++|.|. ++
T Consensus 2 ~~f~~~~Cp~C~~~~~~-L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEI-LAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-IN 61 (84)
T ss_pred EEEECCCChhHHHHHHH-HHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-EC
Confidence 56778999999887421 11100 222377787776532 22 2367778888999984 44
No 165
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=91.45 E-value=1.4 Score=32.08 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=39.1
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceE-EEEeecCCh-HHHHHHHH--cCCCCCcEEEEEecCCCceEEEEec
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFI-FWQVYDDTS-EGKKVCTY--YKLDSIPVVLVVDPITGQKMRSWCG 259 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV-~~q~d~~s~-eg~~~~~~--Y~v~~~P~i~Iidp~tG~~v~~~~G 259 (320)
++-+..+||..|+.+ +.+|.++-+ +..+|++.. +....... ++..++|+| +++ +|+.+.
T Consensus 2 v~ly~~~~C~~C~~~----------~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~---- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQL----------MRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT---- 64 (77)
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----
Confidence 345677999999876 344544322 334555533 33333222 467899997 454 364432
Q ss_pred CCChHHHHHHHH
Q 020843 260 MVQPESLLEDLV 271 (320)
Q Consensus 260 ~~~~~~fl~~L~ 271 (320)
..+..++.+.|+
T Consensus 65 ~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 NPSAAQVKAKLQ 76 (77)
T ss_pred CCCHHHHHHHhh
Confidence 244556665554
No 166
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=91.40 E-value=0.62 Score=31.31 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
.+.|.+..++=-..+.+..+..|+.++||+|.||+..++.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4566666666577899999999999999999999988763
No 167
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=91.09 E-value=0.31 Score=40.37 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~ 45 (320)
.++.|.-.++- ||++.+.|+..|+.|||||-.||-
T Consensus 78 ~~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 78 TEDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred CHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 35677888888 999999999999999999999885
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.95 E-value=1.7 Score=44.90 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCeEEEEE-eCCCCcchhhhhhccCCCHHHHHHHhcc--eEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 171 KAKDAASVQDKWLLVNL-QSTKEFSSHMLNRDTWANEAVSQTISTN--FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 171 ~A~~~Ak~~~K~LLV~l-~~~~~f~c~~lnRdvw~n~~V~~~l~~n--FV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+.++.-++-+|.+-|-+ .+++|+.|+...+ .+.++..+| .-.--++.... ..++..|++...|+++|
T Consensus 466 ~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~------~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i-- 535 (555)
T TIGR03143 466 ELLEKIKKITKPVNIKIGVSLSCTLCPDVVL------AAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVV-- 535 (555)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCCcHHHHH------HHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEE--
Confidence 34444455567775555 7999999987754 334455443 44444444443 57888999999999986
Q ss_pred cCCCceEEEEecCCChHHHHHHH
Q 020843 248 PITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 248 p~tG~~v~~~~G~~~~~~fl~~L 270 (320)
+|+.+ +.|..+.+++++.|
T Consensus 536 --~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 536 --DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred --CCEEE--EeeCCCHHHHHHhh
Confidence 35544 56988999998876
No 169
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=90.63 E-value=0.35 Score=40.00 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=32.3
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ 46 (320)
.++.|.-.++- ||++.+.|+.-|+.|||||-.||-.
T Consensus 76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 46778888898 9999999999999999999999863
No 170
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=0.054 Score=49.70 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=38.9
Q ss_pred CCcchHHHHHhhhccccCC-CH-HHHHHHHHHcCCCHHHHHHHHhcCCC
Q 020843 6 SANDKQSMVSSFLEIAVGQ-TA-ETAVQFLQATSWKLDEAIQLFYVGNE 52 (320)
Q Consensus 6 ~~~~~~~~i~~F~~iTt~~-~~-~~A~~~Le~~~wdLe~Av~~ff~~~~ 52 (320)
.+.++.++|.+|..++..+ .+ .-|+.||++.||+|..|++.||+.++
T Consensus 19 tt~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 19 TTTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 4456899999999995322 23 78999999999999999999999765
No 171
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=90.09 E-value=2.9 Score=29.64 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=37.7
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCC-hH-HHHHHHHcCCCCCcEEEEEecCCCceEEEEecC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT-SE-GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s-~e-g~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~ 260 (320)
++.++.+||..|..+ +.++++ ++-+..++++. .+ ...+.....+..+|+|.+ + |+ .+.|
T Consensus 2 v~l~~~~~c~~c~~~----------~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~---~~---~i~g- 63 (73)
T cd02976 2 VTVYTKPDCPYCKAT----------KRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI-G---DE---HLSG- 63 (73)
T ss_pred EEEEeCCCChhHHHH----------HHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-C---CE---EEec-
Confidence 466788999999775 334432 23333444443 22 334544456789999864 3 42 3455
Q ss_pred CChHHHHH
Q 020843 261 VQPESLLE 268 (320)
Q Consensus 261 ~~~~~fl~ 268 (320)
.+++.+.+
T Consensus 64 ~~~~~l~~ 71 (73)
T cd02976 64 FRPDKLRA 71 (73)
T ss_pred CCHHHHHh
Confidence 45555443
No 172
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.28 E-value=2 Score=35.97 Aligned_cols=94 Identities=9% Similarity=0.143 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCC--HHHHHHHhcc-eEEEEeecCChHHHHHHHHcCCC--CCcEEEEEecCCCceE
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWAN--EAVSQTISTN-FIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKM 254 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n--~~V~~~l~~n-FV~~q~d~~s~eg~~~~~~Y~v~--~~P~i~Iidp~tG~~v 254 (320)
+.|=+|-|. +...+|..=.++-+.+ ..|.+-.+.. +.|.-+|.+.... +.+.|++. .+|.++++++..| +.
T Consensus 20 ~~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY 95 (130)
T cd02983 20 KQLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KF 95 (130)
T ss_pred CCeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cc
Confidence 455555554 3333443322222211 2455555556 6777777666544 78888984 5999999999655 43
Q ss_pred EEEecCCChHHHHHHHHHHHhcC
Q 020843 255 RSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 255 ~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
....|.++.+.+.+-+.++++-.
T Consensus 96 ~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 96 ATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ccccCccCHHHHHHHHHHHHcCC
Confidence 33568889998888888888753
No 173
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=88.98 E-value=1.9 Score=32.04 Aligned_cols=55 Identities=5% Similarity=0.022 Sum_probs=35.1
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCCh-HH--HHHHHHcCCCCCcEEEEEe
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-EG--KKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~-eg--~~~~~~Y~v~~~P~i~Iid 247 (320)
+-++.++|+.|..+. .+.+-+...|.++.++.+.. +. ..+.+.++..++|.+ +++
T Consensus 3 ~~y~~~~Cp~C~~~~-------~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 3 VVFSKSYCPYCKRAK-------SLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEcCCCHHHHHHH-------HHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 556778999997763 22222333577777776643 21 245567788899998 455
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.80 E-value=0.41 Score=42.51 Aligned_cols=94 Identities=9% Similarity=0.051 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccC-----------------------------CCHHHHHHHhc----ce
Q 020843 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTW-----------------------------ANEAVSQTIST----NF 216 (320)
Q Consensus 170 ~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw-----------------------------~n~~V~~~l~~----nF 216 (320)
++++.......|..++.|.++.|+.|+.|.+.+- |.+.-.+.+++ ..
T Consensus 67 ~~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~ 146 (197)
T cd03020 67 DDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGK 146 (197)
T ss_pred ccCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCC
Confidence 3344455556788888888888888888765443 22211111111 00
Q ss_pred E---EEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHH
Q 020843 217 I---FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED 269 (320)
Q Consensus 217 V---~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~ 269 (320)
+ .-.+...-.+..++++.+++.++|+|++-+ |.. +.|+.++++|.+.
T Consensus 147 ~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~~~---G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 147 VPPPAASCDNPVAANLALGRQLGVNGTPTIVLAD---GRV---VPGAPPAAQLEAL 196 (197)
T ss_pred CCCCccccCchHHHHHHHHHHcCCCcccEEEECC---CeE---ecCCCCHHHHHhh
Confidence 0 000111112345677788899999997433 554 5798888877654
No 175
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.61 E-value=0.39 Score=49.61 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc------ceEEEEeecCChHHHHHHHHcCCCCC
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLDSI 240 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~------nFV~~q~d~~s~eg~~~~~~Y~v~~~ 240 (320)
.+|..|+..++ |--||-|+++||..|..|- |..+++-+. =-.+..+|-..++...+|+.|+|..|
T Consensus 47 ~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 47 DTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred hhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 47777776655 5568999999999999984 444444331 13356667778899999999999999
Q ss_pred cEEEEEecCCCc--eEEEEecCCChHHHHHHHHHHHhc
Q 020843 241 PVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 241 P~i~Iidp~tG~--~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|+|-..-|.+-. .=..+.|...+.+..++|...+..
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 999999884211 112356777788888888877753
No 176
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.39 E-value=1.8 Score=30.61 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=34.4
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEEEE
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~I 245 (320)
+.+..++|+.|... +++|++ .|..+-++.+......+.+.++..++|.|.|
T Consensus 2 ~vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 45667899999665 555554 3555555444444566666668999999996
No 177
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.74 E-value=4.8 Score=41.19 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCeE-EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecC
Q 020843 171 KAKDAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (320)
Q Consensus 171 ~A~~~Ak~~~K~L-LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~ 249 (320)
+.++..++-+|++ +.-|.+++|+.|...-+-. ..+. ..+.+..+..+ +..+-..++..|++...|+++| +
T Consensus 106 ~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~---~~~a-~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i-~-- 176 (517)
T PRK15317 106 EVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL---NLMA-VLNPNITHTMI--DGALFQDEVEARNIMAVPTVFL-N-- 176 (517)
T ss_pred HHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH---HHHH-HhCCCceEEEE--EchhCHhHHHhcCCcccCEEEE-C--
Confidence 3444555555555 6677789999997653222 1111 12334444444 4555567888999999999975 4
Q ss_pred CCceEEEEecCCChHHHHHHHHH
Q 020843 250 TGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 250 tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
|+.+ +.|..+.++|++.|..
T Consensus 177 -~~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 177 -GEEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred -CcEE--EecCCCHHHHHHHHhc
Confidence 4444 5688888888888765
No 178
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.24 E-value=7.3 Score=32.98 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=66.0
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceE--
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-- 254 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v-- 254 (320)
..+.|.|.|-|-..|.+.|-.|+.= + ..+.+-+++.=+.|-+|++ +-..|.+.|.+...|++.+.=.+.-.++
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~-L--~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~kHmkiD~ 94 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDEL-L--SSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNNKHMKIDL 94 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHH-H--HHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcCceEEEee
Confidence 4678999999999999999999531 1 3445555655567888887 5566888899999999887763211111
Q ss_pred -----EEEecCC-ChHHHHHHHHHHHh
Q 020843 255 -----RSWCGMV-QPESLLEDLVPFMD 275 (320)
Q Consensus 255 -----~~~~G~~-~~~~fl~~L~~fld 275 (320)
.+|.|++ +.++|++.++.+..
T Consensus 95 gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 95 GTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred CCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 2456654 78899988877654
No 179
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.19 E-value=1.2 Score=45.94 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=38.6
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 52 (320)
.+++|..|++. ||-..+-+...||.+|||.|.|+.+|-+...
T Consensus 535 ~~e~l~~~~~~-tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks 576 (585)
T KOG3763|consen 535 TDEKLLKFQEE-TGLNSEWSTMCLEQNNWDYERALKLFIELKS 576 (585)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHccCCHHHHHHHHHHhhc
Confidence 47889999999 9999999999999999999999999988654
No 180
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=11 Score=32.95 Aligned_cols=97 Identities=11% Similarity=0.162 Sum_probs=63.2
Q ss_pred HHHHHhcCCeEEEEEeCC-CCcchhh-hhhccCCCHHHHHHHhcceEEEEeecCChH-------------------HHHH
Q 020843 173 KDAASVQDKWLLVNLQST-KEFSSHM-LNRDTWANEAVSQTISTNFIFWQVYDDTSE-------------------GKKV 231 (320)
Q Consensus 173 ~~~Ak~~~K~LLV~l~~~-~~f~c~~-lnRdvw~n~~V~~~l~~nFV~~q~d~~s~e-------------------g~~~ 231 (320)
+..+.-.+||+++||+-- +.+-|.. .|.- ++...++=+-+.+.+.++.++++ ..++
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F---rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDF---RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV 99 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHH---HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence 566677899999999953 3455532 3211 23344444558999999988644 3445
Q ss_pred HHHcCC------------CCCcEEEEEecCCCceEEEEecC---CChHHHHHHHHHH
Q 020843 232 CTYYKL------------DSIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVPF 273 (320)
Q Consensus 232 ~~~Y~v------------~~~P~i~Iidp~tG~~v~~~~G~---~~~~~fl~~L~~f 273 (320)
++.|.+ ..-+...|||+ .|.....|... -.++++++.|...
T Consensus 100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 100 AEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 666665 13578899997 58888888432 2467777777654
No 181
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=83.78 E-value=1.7 Score=36.34 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ 46 (320)
++-|.=-++- +|.+.+.|+.-|+.+|+||-.||-.
T Consensus 85 eeDIkLV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 85 EEDIKLVMEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 5667778888 9999999999999999999888743
No 182
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=1.8 Score=39.91 Aligned_cols=96 Identities=14% Similarity=0.313 Sum_probs=63.9
Q ss_pred cccccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCc
Q 020843 162 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (320)
Q Consensus 162 ~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P 241 (320)
++.++..| +.. .+|.++++|+..|+..|..|+. |+ ..+.++. .|..|...+.+.- ..+++.|.+..-|
T Consensus 5 ~i~~~~~f---~~~---~~~~~~~~f~a~wa~~~~q~~~-v~--~~~~~~~-~~~~~~k~~a~~~--~eis~~~~v~~vp 72 (227)
T KOG0911|consen 5 FIVFQEQF---LDQ---KGKLLVLHFWAIWAVVQKQMDQ-VF--DHLAEYF-KNAQFLKLEAEEF--PEISNLIAVEAVP 72 (227)
T ss_pred eehhHHHH---HHh---ccchhhhhhhhhhhhhhhhHHH-HH--HHHHHhh-hhheeeeehhhhh--hHHHHHHHHhcCc
Confidence 34445555 333 7899999999999999999952 22 2333444 4566666655443 3477788899999
Q ss_pred EEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
++.++. .|+.+.++.|...+. +...+..
T Consensus 73 ~~~~~~--~~~~v~~l~~~~~~~-~~~~~~~ 100 (227)
T KOG0911|consen 73 YFVFFF--LGEKVDRLSGADPPF-LVSKVEK 100 (227)
T ss_pred eeeeee--cchhhhhhhccCcHH-HHHHHHH
Confidence 999996 378888888755443 3333333
No 183
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=83.07 E-value=5.3 Score=30.67 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=31.1
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcc------eEEEEeecCC--hHHHHHHHHcCC--CCCcEEEEEe
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN------FIFWQVYDDT--SEGKKVCTYYKL--DSIPVVLVVD 247 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n------FV~~q~d~~s--~eg~~~~~~Y~v--~~~P~i~Iid 247 (320)
++-++.+||+.|... +++|++. +-+..+|++. .+...+...++- .++|.|+ |+
T Consensus 2 V~vys~~~Cp~C~~a----------k~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA----------KQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VD 64 (86)
T ss_pred EEEEeCCCCccHHHH----------HHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-EC
Confidence 345567899999665 4455442 3344455542 123345566663 7899995 45
No 184
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.94 E-value=8.7 Score=39.34 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCeE-EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEec
Q 020843 170 EKAKDAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 170 ~~A~~~Ak~~~K~L-LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp 248 (320)
++.++..++-+|.+ +.-|.++.|+.|...-+-. .-....+.+ |-..+ ++..+-..++..|++...|+++| +
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~----~~~a~~~p~-i~~~~-id~~~~~~~~~~~~v~~VP~~~i-~- 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL----NQMALLNPN-ISHTM-IDGALFQDEVEALGIQGVPAVFL-N- 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH----HHHHHhCCC-ceEEE-EEchhCHHHHHhcCCcccCEEEE-C-
Confidence 34455555545554 6667778899997542211 111111223 33333 55566677889999999999985 3
Q ss_pred CCCceEEEEecCCChHHHHHHHHHH
Q 020843 249 ITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 249 ~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
|+.+ +.|..+.++|++.|...
T Consensus 178 --~~~~--~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 178 --GEEF--HNGRMDLAELLEKLEET 198 (515)
T ss_pred --CcEE--EecCCCHHHHHHHHhhc
Confidence 4444 66888999998888766
No 185
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=82.69 E-value=3.6 Score=35.27 Aligned_cols=67 Identities=7% Similarity=-0.136 Sum_probs=43.6
Q ss_pred cCCeEEEEEe-CCCCcchhhh-hhccCCCHHHHHHHhcce-EEEEeecCChHHHH-HHHHcCCCCCcEEEEEec
Q 020843 179 QDKWLLVNLQ-STKEFSSHML-NRDTWANEAVSQTISTNF-IFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 179 ~~K~LLV~l~-~~~~f~c~~l-nRdvw~n~~V~~~l~~nF-V~~q~d~~s~eg~~-~~~~Y~v~~~P~i~Iidp 248 (320)
.+||++|+|+ ..+|+.|..- -+.. ++...++-+.+. .++.+..+++...+ +++.+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 5778888888 4579999753 3221 234455556677 59999998877544 77777652 244466666
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=80.16 E-value=8.4 Score=26.94 Aligned_cols=50 Identities=4% Similarity=0.004 Sum_probs=30.0
Q ss_pred EEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCCh--HHHHHHHHcCCCCCcEEEE
Q 020843 186 NLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS--EGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 186 ~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s~--eg~~~~~~Y~v~~~P~i~I 245 (320)
-+..++|+.|+.. +.+|+++ .-+..+|+... ....+.+..+..++|++.+
T Consensus 4 ly~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 4 VFSKSTCPYCKRA----------KRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEECCCCHHHHHH----------HHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4456889999665 4444432 23445555443 2455666677789998853
No 187
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=78.97 E-value=7.5 Score=32.99 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=60.4
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcE-EEEE--------e
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV-VLVV--------D 247 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~-i~Ii--------d 247 (320)
.+++|.|+|-|-.+|.+.|-.|+.-+ -.+.+.+++..++|-+|.++-. .+.+.|.+. -|+ +.+. |
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDeiL---~~~a~~v~~~a~IY~vDi~~Vp--dfn~~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDEIL---YKIAEKVKNFAVIYLVDIDEVP--DFNQMYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTTH--CCHHHTTS--SSEEEEEEETTEEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHHHH---HHHHHHhhcceEEEEEEcccch--hhhcccccC-CCeEEEEEecCeEEEEE
Confidence 37899999999999999999997543 3566778888899999988533 366778887 555 4443 2
Q ss_pred cCCCceEEEEecCC-ChHHHHHHHHHHH
Q 020843 248 PITGQKMRSWCGMV-QPESLLEDLVPFM 274 (320)
Q Consensus 248 p~tG~~v~~~~G~~-~~~~fl~~L~~fl 274 (320)
--||.. .+|.+.+ +.++|++.+..+.
T Consensus 91 ~Gtgnn-nKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 91 FGTGNN-NKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp SSSSSS-SSBCS--SCHHHHHHHHHHHH
T ss_pred ecCCCc-cEEEEEcCcHHHHHHHHHHHH
Confidence 223322 1244543 6899998877664
No 188
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=78.37 E-value=9.4 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=32.2
Q ss_pred CeEEEEEeC----CCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecCChHH-HHHHHHcCCCCCcEEEEEe
Q 020843 181 KWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEG-KKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 181 K~LLV~l~~----~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~s~eg-~~~~~~Y~v~~~P~i~Iid 247 (320)
+.|+|+-.+ ++|+.|... +++|++. |..+-+..+ ++. ..+.+..+..++|.| +|+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~a----------k~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKV----------VQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHH----------HHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE-EEC
Confidence 456666554 588888654 5566543 333333333 333 445556677899998 455
No 189
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=78.04 E-value=10 Score=33.11 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=13.3
Q ss_pred hcCCeEEEEEeCCCCcc-hhhh
Q 020843 178 VQDKWLLVNLQSTKEFS-SHML 198 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~-c~~l 198 (320)
-++||+||+|--..|++ |..+
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~ 71 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTT 71 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHH
T ss_pred hCCCeEEEEEEEcCCCccCHHH
Confidence 35788888887776654 5544
No 190
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=78.00 E-value=9.8 Score=28.78 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=38.9
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhc------ceEEEEeecCC--hHHHHHHHHcC--CCCCcEEEEEecCCCce
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDT--SEGKKVCTYYK--LDSIPVVLVVDPITGQK 253 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~------nFV~~q~d~~s--~eg~~~~~~Y~--v~~~P~i~Iidp~tG~~ 253 (320)
++.+..++|+.|... +++|++ ++-+-.+|++. .+...+...++ +.++|.|+ |+ |+.
T Consensus 3 v~iy~~~~C~~C~~a----------~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i~---g~~ 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRA----------KELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-VD---QKH 68 (85)
T ss_pred EEEEeCCCChhHHHH----------HHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-EC---CEE
Confidence 456677899999665 445544 44444555543 23344555454 47899986 44 544
Q ss_pred EEEEecCCChHHHHHHHHH
Q 020843 254 MRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 254 v~~~~G~~~~~~fl~~L~~ 272 (320)
+ .| -+++.+.+.+
T Consensus 69 i---gg---~~~~~~~~~~ 81 (85)
T PRK11200 69 I---GG---CTDFEAYVKE 81 (85)
T ss_pred E---cC---HHHHHHHHHH
Confidence 3 34 3445544443
No 191
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=77.21 E-value=7.7 Score=31.46 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=37.6
Q ss_pred cceEEEEeecCChHHHHHHHHcCCCC--CcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 214 TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 214 ~nFV~~q~d~~s~eg~~~~~~Y~v~~--~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
....|+-+|.+...+ ..+.+++.. +|.|+|++-..+.+-.-..+.++++.+.+-+++|++
T Consensus 48 gki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 48 GAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred ceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 344444455444443 677788854 999999997432222214466788877777777765
No 192
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=76.96 E-value=9.4 Score=28.94 Aligned_cols=79 Identities=15% Similarity=0.038 Sum_probs=50.2
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHH-hcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCC
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l-~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~ 262 (320)
++.+..++|.-|.... +.+.++. ...|-+-.+|+++.+ .+..+|.. ..|.+.+-++++........+.++
T Consensus 2 l~l~~k~~C~LC~~a~------~~L~~~~~~~~~~l~~vDI~~d~--~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAK------EILEEVAAEFPFELEEVDIDEDP--ELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHH------HHHHHCCTTSTCEEEEEETTTTH--HHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHH------HHHHHHHhhcCceEEEEECCCCH--HHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 4667788898887662 2333322 345888999998544 37778985 899998877543222333456788
Q ss_pred hHHHHHHHH
Q 020843 263 PESLLEDLV 271 (320)
Q Consensus 263 ~~~fl~~L~ 271 (320)
.+.+.+.|+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888877664
No 193
>PRK10329 glutaredoxin-like protein; Provisional
Probab=74.16 E-value=36 Score=25.84 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=39.7
Q ss_pred EEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecC-ChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCCh
Q 020843 186 NLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDD-TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP 263 (320)
Q Consensus 186 ~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~-s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~ 263 (320)
-+..++|+.|+.. +++|.+. .-|-.+|++ .++.....+..+...+|.|.+ + + ..|.| .++
T Consensus 5 lYt~~~Cp~C~~a----------k~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~---~---~~~~G-f~~ 66 (81)
T PRK10329 5 IYTRNDCVQCHAT----------KRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G---D---LSWSG-FRP 66 (81)
T ss_pred EEeCCCCHhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C---C---EEEec-CCH
Confidence 3455889999654 5666653 334445655 344555555567789999964 3 2 23566 566
Q ss_pred HHHHHHH
Q 020843 264 ESLLEDL 270 (320)
Q Consensus 264 ~~fl~~L 270 (320)
+.+.+..
T Consensus 67 ~~l~~~~ 73 (81)
T PRK10329 67 DMINRLH 73 (81)
T ss_pred HHHHHHH
Confidence 6655543
No 194
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=74.14 E-value=13 Score=26.89 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=30.2
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCC-CCcEEEEEe
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLD-SIPVVLVVD 247 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~-~~P~i~Iid 247 (320)
+-+..++|+.|+.. +++|++ .|..+.++.+...-.++.+.++.. ++|.|+ |+
T Consensus 3 ~ly~~~~Cp~C~~a----------k~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~-i~ 58 (75)
T cd03418 3 EIYTKPNCPYCVRA----------KALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF-IG 58 (75)
T ss_pred EEEeCCCChHHHHH----------HHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE-EC
Confidence 44556889999664 555554 344444433322345555666665 899874 54
No 195
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=73.06 E-value=14 Score=27.69 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=34.4
Q ss_pred HhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCC-hHHHHHHHHcCCCCCcEEEE
Q 020843 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDT-SEGKKVCTYYKLDSIPVVLV 245 (320)
Q Consensus 177 k~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s-~eg~~~~~~Y~v~~~P~i~I 245 (320)
.++++ ++-+..++|+.|... +++|++. +=+-.++++. .++..+...++..++|.|.|
T Consensus 5 ~~~~~--V~ly~~~~Cp~C~~a----------k~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 5 RKPES--VVVFTKPGCPFCAKA----------KATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCC--EEEEECCCCHhHHHH----------HHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34444 445566899999655 5555542 2233344443 44566766778889999963
No 196
>PHA03050 glutaredoxin; Provisional
Probab=72.22 E-value=14 Score=29.96 Aligned_cols=53 Identities=4% Similarity=-0.054 Sum_probs=31.0
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcc------eEEEEeecC--ChH-HHHHHHHcCCCCCcEEEEEe
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN------FIFWQVYDD--TSE-GKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n------FV~~q~d~~--s~e-g~~~~~~Y~v~~~P~i~Iid 247 (320)
++-+..+||+.|... +++|+++ |-.+.++.. ..+ -..+.+..+-.+.|.|+ |+
T Consensus 15 V~vys~~~CPyC~~a----------k~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If-I~ 76 (108)
T PHA03050 15 VTIFVKFTCPFCRNA----------LDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF-FG 76 (108)
T ss_pred EEEEECCCChHHHHH----------HHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE-EC
Confidence 334555889999655 5666653 434444431 222 23455556678999994 44
No 197
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=71.80 E-value=13 Score=27.44 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=30.4
Q ss_pred EeCCCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 187 LQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 187 l~~~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+..++|+.|... +++++++ |-...++.+.....++....+..++|.|. |+
T Consensus 4 y~~~~Cp~C~~a----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~-i~ 56 (79)
T TIGR02181 4 YTKPYCPYCTRA----------KALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF-IG 56 (79)
T ss_pred EecCCChhHHHH----------HHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 456889999655 4555542 43443433333445666667778999984 44
No 198
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=71.67 E-value=17 Score=26.33 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=31.5
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
+-+..++|+.|... +++|++ .|..+.++.+ .+...+...++..++|.| +|+
T Consensus 4 ~lys~~~Cp~C~~a----------k~~L~~~~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~i-fi~ 57 (72)
T cd03029 4 SLFTKPGCPFCARA----------KAALQENGISYEEIPLGKD-ITGRSLRAVTGAMTVPQV-FID 57 (72)
T ss_pred EEEECCCCHHHHHH----------HHHHHHcCCCcEEEECCCC-hhHHHHHHHhCCCCcCeE-EEC
Confidence 34556889999665 555554 3444433322 245666666778899998 555
No 199
>CHL00098 tsf elongation factor Ts
Probab=71.16 E-value=5.5 Score=36.11 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=34.7
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 12 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
++|.+.-+. ||+..-.|+.-|+.++||++.|++.-=..+
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g 41 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKG 41 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 578889999 999999999999999999999998776543
No 200
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=5.2 Score=32.46 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcC----CCCCcEEEE
Q 020843 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK----LDSIPVVLV 245 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~----v~~~P~i~I 245 (320)
+.+-.+++ .|.|..++|..|+.+ +.+|.+ +.-++..+..|.+ ++|.++-+.+. ..++|.|+|
T Consensus 8 ~~~i~~~~--VVifSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 8 RKMISENP--VVIFSKSSCPYCHRA-KELLSD------LGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHhhcCC--EEEEECCcCchHHHH-HHHHHh------CCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEE
Confidence 33444455 344566899999985 444444 5667888888876 55555444332 368999885
No 201
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=69.83 E-value=15 Score=25.65 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHhc--CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC---hHHHHHHHHcCCCCCc
Q 020843 167 GSFEKAKDAASVQ--DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKLDSIP 241 (320)
Q Consensus 167 gsf~~A~~~Ak~~--~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s---~eg~~~~~~Y~v~~~P 241 (320)
-|.++|++.|++. ++.+.+.+.... +.--.|++.+.. +++ --
T Consensus 2 is~~~A~~~A~~~~~~~~~~~~~~~~~----------------------~~~~~Y~v~~~~~~~~~~-----------~~ 48 (64)
T PF03413_consen 2 ISEEQAVEIALKQYPGKVISVELEEDE----------------------NGRLVYEVEVVSDDDPDG-----------GE 48 (64)
T ss_dssp --HHHHHHHHHCCCCCEEEEEEEECC-----------------------TCEEEEEEEEEBTTSTTT-----------EE
T ss_pred cCHHHHHHHHHHHCCCCEEEEEEcccc----------------------CCcEEEEEEEEEEecCCC-----------CE
Confidence 3678999999987 455555544331 345567777654 222 22
Q ss_pred EEEEEecCCCceEEEE
Q 020843 242 VVLVVDPITGQKMRSW 257 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~ 257 (320)
+-++||+.||+.+..|
T Consensus 49 ~~v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 49 YEVYVDAYTGEILSSY 64 (64)
T ss_dssp EEEEEETTT--EEEEE
T ss_pred EEEEEECCCCeEEEeC
Confidence 6677999999998764
No 202
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=69.20 E-value=6.5 Score=35.58 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
.++|.+..+. ||+..-.|+.-|+.++||++.|+...=..+
T Consensus 5 a~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g 44 (198)
T PRK12332 5 AKLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKG 44 (198)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 5789999999 999999999999999999999999876643
No 203
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=68.89 E-value=6.3 Score=37.81 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
.++|.+.-+. ||+..-.|+.-|+.++||+|.|+..-=..+
T Consensus 5 a~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG 44 (290)
T TIGR00116 5 AQLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESG 44 (290)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 5789999999 999999999999999999999999776543
No 204
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=68.07 E-value=36 Score=26.75 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=34.4
Q ss_pred HHHHhcCCeEEEEEeC----CCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecC-ChHHH-HHHHHcCCCCCcEEEEE
Q 020843 174 DAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDD-TSEGK-KVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 174 ~~Ak~~~K~LLV~l~~----~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~-s~eg~-~~~~~Y~v~~~P~i~Ii 246 (320)
+..-+++ .|+|+... ++|+.|... +++|++. .=+..+|+. .++.+ .+.+..+..++|.|. |
T Consensus 6 ~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~a----------k~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf-i 73 (97)
T TIGR00365 6 KEQIKEN-PVVLYMKGTPQFPQCGFSARA----------VQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY-V 73 (97)
T ss_pred HHHhccC-CEEEEEccCCCCCCCchHHHH----------HHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE-E
Confidence 3334444 46666653 789999655 5566542 223344543 34433 344455667899995 4
Q ss_pred e
Q 020843 247 D 247 (320)
Q Consensus 247 d 247 (320)
+
T Consensus 74 ~ 74 (97)
T TIGR00365 74 K 74 (97)
T ss_pred C
Confidence 4
No 205
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=67.77 E-value=3.6 Score=39.20 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=32.7
Q ss_pred HHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 14 VSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 14 i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
+-.|.++|+.+++..|+-+|...+|+++.|++.||+.
T Consensus 28 ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~s 64 (349)
T KOG2756|consen 28 LCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEP 64 (349)
T ss_pred HHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCc
Confidence 4455666699999999999999999999999999985
No 206
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=67.47 E-value=25 Score=25.59 Aligned_cols=51 Identities=2% Similarity=-0.049 Sum_probs=30.6
Q ss_pred EEeCCCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 186 NLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 186 ~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
-++.++|+.|... +++|+++ |...-++.+...-.++.+.++...+|.|+ ++
T Consensus 5 ly~~~~C~~C~ka----------~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~-i~ 58 (73)
T cd03027 5 IYSRLGCEDCTAV----------RLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIF-FN 58 (73)
T ss_pred EEecCCChhHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 3445789999655 5566553 44443333333345666666777899994 44
No 207
>PRK09377 tsf elongation factor Ts; Provisional
Probab=67.39 E-value=8 Score=37.07 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=36.7
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
..++|.+.-+. ||+..-.|+.-|+.+|||+|.|++.-=..+
T Consensus 5 s~~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G 45 (290)
T PRK09377 5 TAALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKG 45 (290)
T ss_pred CHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 36789999999 999999999999999999999999876543
No 208
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=67.23 E-value=18 Score=34.17 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCC---------------CCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhcC
Q 020843 226 SEGKKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 226 ~eg~~~~~~Y~v---------------~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
.+-.++++.|+| +.-=.+.+|||. |+-+.-+--.-+++++.+.+..-+..|
T Consensus 213 eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPe-g~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 213 EQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPE-GEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCC-cceehhhcccCCHHHHHHHHHHHHHhc
Confidence 445778888886 223357788994 877644322468888888877665543
No 209
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=67.12 E-value=28 Score=28.26 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=37.9
Q ss_pred HHHHHHh-cceEEEEeecCChHHHHHHHHcCCC--C--CcEEEEEecCCCceEEEEecCC-ChHHHHHHHHHH
Q 020843 207 AVSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLD--S--IPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPF 273 (320)
Q Consensus 207 ~V~~~l~-~nFV~~q~d~~s~eg~~~~~~Y~v~--~--~P~i~Iidp~tG~~v~~~~G~~-~~~~fl~~L~~f 273 (320)
.|.+-.+ ...+|.-+|.+...+ ..+.+++. . +|.++|++. .+.+- ...+.. +++.+.+-++.|
T Consensus 42 ~vAk~fk~gki~Fv~~D~~~~~~--~l~~fgl~~~~~~~P~~~i~~~-~~~KY-~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 42 KVAKDFPDRKLNFAVADKEDFSH--ELEEFGLDFSGGEKPVVAIRTA-KGKKY-VMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHCcCCeEEEEEEcHHHHHH--HHHHcCCCcccCCCCEEEEEeC-CCCcc-CCCcccCCHHHHHHHHHHh
Confidence 4555556 466666666654433 77788885 4 999999995 34222 234555 666555544443
No 210
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=66.91 E-value=7.2 Score=35.94 Aligned_cols=115 Identities=13% Similarity=0.274 Sum_probs=69.7
Q ss_pred cCCCcccccc---c-cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHH
Q 020843 157 YRPPFHLMFN---G-SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC 232 (320)
Q Consensus 157 f~Ppf~~~~~---g-sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~ 232 (320)
|.|.|.-.+. | .|-++++.-. .--.|+|-|+-+...-|..||+-+-| |...|=.++.-.-........
T Consensus 133 ~gp~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~c-------LAAeyP~vKFckikss~~gas 204 (273)
T KOG3171|consen 133 FGPRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTC-------LAAEYPIVKFCKIKSSNTGAS 204 (273)
T ss_pred cCCccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHH-------hhccCCceeEEEeeeccccch
Confidence 5677665442 2 5666655432 23467888999999999999876543 222222222211111112234
Q ss_pred HHcCCCCCcEEEEEecCCCceEEEEec---CCChHHHHHHHHHHHhcCCCcc
Q 020843 233 TYYKLDSIPVVLVVDPITGQKMRSWCG---MVQPESLLEDLVPFMDGGPREQ 281 (320)
Q Consensus 233 ~~Y~v~~~P~i~Iidp~tG~~v~~~~G---~~~~~~fl~~L~~fld~~~~d~ 281 (320)
..|..+.+|+++|.. .|+.+..+.. -..-+=|...|..||..|-++.
T Consensus 205 ~~F~~n~lP~LliYk--gGeLIgNFv~va~qlgedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 205 DRFSLNVLPTLLIYK--GGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred hhhcccCCceEEEee--CCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCc
Confidence 567788999999998 4888765321 1233445678999999988754
No 211
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.52 E-value=18 Score=30.33 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCC--------CCcchhhhhhccCCCHHHHHHHh---cceEEEEeecCChHHHH-----
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQST--------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKK----- 230 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~--------~~f~c~~lnRdvw~n~~V~~~l~---~nFV~~q~d~~s~eg~~----- 230 (320)
.+|++.++.=.+..+ |+|+|..+ ||++|-.= -|.|.+.++ ++..|+.+++-+.+-++
T Consensus 13 e~~~~~~~~~~n~~~-ifvlF~gskd~~tGqSWCPdCV~A------EPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 13 ESFEETLKNVENGKT-IFVLFLGSKDDTTGQSWCPDCVAA------EPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHHHHHHHHhCCce-EEEEEecccCCCCCCcCCchHHHh------hHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc
Confidence 478888877666666 99999865 89999654 577777777 56677777765533111
Q ss_pred HHHHcC-CCCCcEEEEEe
Q 020843 231 VCTYYK-LDSIPVVLVVD 247 (320)
Q Consensus 231 ~~~~Y~-v~~~P~i~Iid 247 (320)
+....+ +...||++=.+
T Consensus 86 FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cccCCCceeecceeeEEc
Confidence 111112 25667776555
No 212
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=65.42 E-value=69 Score=26.08 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=52.6
Q ss_pred cHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCC--hHHHHHHHHcCC-CCCc
Q 020843 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT--SEGKKVCTYYKL-DSIP 241 (320)
Q Consensus 168 sf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s--~eg~~~~~~Y~v-~~~P 241 (320)
.|++.++. ...|+++|+=|+++|+-+.+-- ..+.+++++ ..-+|-+++-. +--.+++..|+| ..=|
T Consensus 9 ql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 9 QLEEILEE--SKEKPVLIFKHSTRCPISAMAL------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp HHHHHHHH-----SEEEEEEE-TT-HHHHHHH------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred HHHHHHHh--cccCcEEEEEeCCCChhhHHHH------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 34444443 3489999999999999987664 455556553 23355555443 335778889998 5689
Q ss_pred EEEEEecCCCceEEEEec-CCChHHH
Q 020843 242 VVLVVDPITGQKMRSWCG-MVQPESL 266 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G-~~~~~~f 266 (320)
-+++|. +|+.++.-.. .++++.+
T Consensus 81 Q~ili~--~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIK--NGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEE--TTEEEEEEEGGG-SHHHH
T ss_pred cEEEEE--CCEEEEECccccCCHHhc
Confidence 999998 5988876543 4666654
No 213
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=63.58 E-value=19 Score=25.27 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=35.7
Q ss_pred cchHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 8 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
.-.+++|.|-..+-.|.+.++-++=|+.+|-|+..||+..++.
T Consensus 7 ~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 7 QVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp GS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 3468899999888899999999999999999999999988764
No 214
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=62.69 E-value=29 Score=27.45 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=35.7
Q ss_pred EEEEeCCCCcchhhhhhccCCCHHHHHHHhcceE-EEEeecC-ChHHHHH----HHHcCCCCCcEEEEEecCCCceEEEE
Q 020843 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFI-FWQVYDD-TSEGKKV----CTYYKLDSIPVVLVVDPITGQKMRSW 257 (320)
Q Consensus 184 LV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV-~~q~d~~-s~eg~~~----~~~Y~v~~~P~i~Iidp~tG~~v~~~ 257 (320)
++-+..++|+.|.... ++|++.=| +..++++ .+++..+ .+..+..++|.| +|+ |+. |
T Consensus 10 Vvvysk~~Cp~C~~ak----------~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi~---g~~---i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVK----------RLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FVG---GKL---V 72 (99)
T ss_pred EEEEECCCCHHHHHHH----------HHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EEC---CEE---E
Confidence 3344558999997764 45554433 2334443 3444443 333456799998 455 433 4
Q ss_pred ecCCChHHH
Q 020843 258 CGMVQPESL 266 (320)
Q Consensus 258 ~G~~~~~~f 266 (320)
-|+-+...+
T Consensus 73 GG~ddl~~l 81 (99)
T TIGR02189 73 GGLENVMAL 81 (99)
T ss_pred cCHHHHHHH
Confidence 555444333
No 215
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=62.03 E-value=12 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.439 Sum_probs=21.3
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 020843 22 VGQTAETAVQFLQATSWKLDEAIQLF 47 (320)
Q Consensus 22 t~~~~~~A~~~Le~~~wdLe~Av~~f 47 (320)
...+...-.+||.+.+||++.|+.++
T Consensus 27 ~~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 27 EDHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp SS-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 35577899999999999999999876
No 216
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=59.93 E-value=88 Score=30.99 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCC----HHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCc
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWAN----EAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n----~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P 241 (320)
-+|.. +.++.+.+.|++|.+-. ......|..--. +...+++.+ .+=|..+|.... .++++++++..-+
T Consensus 42 KNfk~----~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--~klAKKLgv~E~~ 114 (383)
T PF01216_consen 42 KNFKR----ALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--AKLAKKLGVEEEG 114 (383)
T ss_dssp TTHHH----HHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--HHHHHHHT--STT
T ss_pred hHHHH----HHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--HHHHHhcCccccC
Confidence 46655 44668999999998732 222221111111 334445543 455666655444 5689999999999
Q ss_pred EEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.|.|.- .|+.+ .+.|..+++.|++-|...++.
T Consensus 115 SiyVfk--d~~~I-EydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 115 SIYVFK--DGEVI-EYDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp EEEEEE--TTEEE-EE-S--SHHHHHHHHHHHHSS
T ss_pred cEEEEE--CCcEE-EecCccCHHHHHHHHHHhccc
Confidence 999987 36665 557999999999999999984
No 217
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=59.57 E-value=11 Score=36.49 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=34.8
Q ss_pred chHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 020843 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (320)
Q Consensus 9 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff 48 (320)
.+.++|.+.-+= ||++..-|++-|+.|||||..|..---
T Consensus 45 ~~~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~L~ 83 (340)
T KOG1071|consen 45 SSKALLKKLREK-TGASMVNCKKALEECGGDLVLAEEWLH 83 (340)
T ss_pred ccHHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHHHH
Confidence 468899999999 999999999999999999999876443
No 218
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=58.98 E-value=34 Score=30.00 Aligned_cols=81 Identities=15% Similarity=0.368 Sum_probs=55.9
Q ss_pred cchhhhh-hccCCCHHHHHHHhcce-----EEEEeecCChHHHHHHHHcCCCCCc------------EEEEEecCCCceE
Q 020843 193 FSSHMLN-RDTWANEAVSQTISTNF-----IFWQVYDDTSEGKKVCTYYKLDSIP------------VVLVVDPITGQKM 254 (320)
Q Consensus 193 f~c~~ln-Rdvw~n~~V~~~l~~nF-----V~~q~d~~s~eg~~~~~~Y~v~~~P------------~i~Iidp~tG~~v 254 (320)
|+|+.|. .+-=++++|.++-..|| +|-++++..+++.-+-+.+. ...| +=.+|| |.|+.+
T Consensus 63 FPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~-~~~~g~~~~~~IkWNFtKFLvd-r~G~VV 140 (162)
T COG0386 63 FPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLK-EQKPGKLGGKDIKWNFTKFLVD-RDGNVV 140 (162)
T ss_pred ccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHH-hcCCCCccCCccceeeEEEEEc-CCCcEE
Confidence 7888776 66667889999998876 56677777766533333221 1111 335677 689999
Q ss_pred EEEecCCChHHHHHHHHHHHh
Q 020843 255 RSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 255 ~~~~G~~~~~~fl~~L~~fld 275 (320)
.++.-...|+++...++..|.
T Consensus 141 ~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 141 KRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EeeCCCCChhhHHHHHHHHhc
Confidence 998777889888887776654
No 219
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.24 E-value=25 Score=32.00 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCCCcEEEEEecCCCceEEEEec--CCChHHHHHHHHHHHh
Q 020843 227 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG--MVQPESLLEDLVPFMD 275 (320)
Q Consensus 227 eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G--~~~~~~fl~~L~~fld 275 (320)
++++++++..+.+||++++.+ +|+.-..-.| +.+++.++..|.+.+.
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 468999999999999999998 4554322246 5689999999987664
No 220
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.75 E-value=5.5 Score=37.54 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=34.6
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHH-HHHHh
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEA-IQLFY 48 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~A-v~~ff 48 (320)
+.+++.+||.. |..+..++..+|.+++|++..| ...||
T Consensus 8 ~~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~~ 46 (260)
T KOG3077|consen 8 QKDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSYY 46 (260)
T ss_pred HHHHHHhhccc-ccccchhhhhhhcccccccchhcccchh
Confidence 78999999999 9999999999999999999999 55554
No 221
>PRK10638 glutaredoxin 3; Provisional
Probab=57.14 E-value=45 Score=24.98 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=29.4
Q ss_pred EEeCCCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecCChHHHHHHHHcCCCCCcEEEEEe
Q 020843 186 NLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 186 ~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iid 247 (320)
-+..++|+.|+.. +++|+++ |...-++.+...-..+.+..+..++|.|. ++
T Consensus 6 ly~~~~Cp~C~~a----------~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~-~~ 59 (83)
T PRK10638 6 IYTKATCPFCHRA----------KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF-ID 59 (83)
T ss_pred EEECCCChhHHHH----------HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE-EC
Confidence 4456789999655 5556553 43333322222234566666778899884 44
No 222
>PRK10824 glutaredoxin-4; Provisional
Probab=55.50 E-value=48 Score=27.34 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCeEEEEEeC----CCCcchhhhhhccCCCHHHHHHHhc---ceEEEEeecCChHHH-HHHHHcCCCCCc
Q 020843 170 EKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLDSIP 241 (320)
Q Consensus 170 ~~A~~~Ak~~~K~LLV~l~~----~~~f~c~~lnRdvw~n~~V~~~l~~---nFV~~q~d~~s~eg~-~~~~~Y~v~~~P 241 (320)
.+.++..-++++ |+|+.-+ ++|+.|.... ++|++ .|-.+-++.+ ++-+ .+.+.-+..++|
T Consensus 5 ~~~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak----------~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVP 72 (115)
T PRK10824 5 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAV----------QALSACGERFAYVDILQN-PDIRAELPKYANWPTFP 72 (115)
T ss_pred HHHHHHHHhcCC-EEEEECCCCCCCCCchHHHHH----------HHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCC
Confidence 344555555555 5555654 5899997663 34433 3444444333 3333 333344567899
Q ss_pred EEEEEecCCCceE
Q 020843 242 VVLVVDPITGQKM 254 (320)
Q Consensus 242 ~i~Iidp~tG~~v 254 (320)
-|+| .|+.+
T Consensus 73 QIFI----~G~~I 81 (115)
T PRK10824 73 QLWV----DGELV 81 (115)
T ss_pred eEEE----CCEEE
Confidence 9884 46554
No 223
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=72 Score=24.12 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=38.4
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhcc-eEEEEeecCCh---HHHHHHHHc-CCCCCcEEEEEecCCCceEEEEec
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS---EGKKVCTYY-KLDSIPVVLVVDPITGQKMRSWCG 259 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n-FV~~q~d~~s~---eg~~~~~~Y-~v~~~P~i~Iidp~tG~~v~~~~G 259 (320)
+.+..++|+.|..- +++|++. +-+--++++.. +.+.+++.. +..++|.|.|= |+ .+-|
T Consensus 4 ~iyt~~~CPyC~~a----------k~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~----~~---~igg 66 (80)
T COG0695 4 TIYTKPGCPYCKRA----------KRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG----GK---HVGG 66 (80)
T ss_pred EEEECCCCchHHHH----------HHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC----CE---EEeC
Confidence 44556789999655 5566653 33333344332 445566665 67899999852 22 2334
Q ss_pred CCChHHHHH
Q 020843 260 MVQPESLLE 268 (320)
Q Consensus 260 ~~~~~~fl~ 268 (320)
..+++++..
T Consensus 67 ~~d~~~~~~ 75 (80)
T COG0695 67 CDDLDALEA 75 (80)
T ss_pred cccHHHHHh
Confidence 556665544
No 224
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.16 E-value=41 Score=30.38 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=32.1
Q ss_pred cCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 235 Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|.+..-..+.+|||+ |..+..+.+.-.|+++++.|+..+..
T Consensus 166 y~~~Hs~~~~lid~~-G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 166 YTIDHSAGFYLIDAD-GRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred ceeeeeeEEEEECCC-CeEEEEecCCCChHHHHHHHHHHhhc
Confidence 334456788999984 98888877666699999999988764
No 225
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=52.53 E-value=51 Score=25.34 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=42.1
Q ss_pred cCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHH
Q 020843 202 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 202 vw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
++.+..|.++++..++.+..+..-.+...+...++....+.+.+++. .|+. .|.++..+++.
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~----~Gvvs~~di~~ 118 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRY----LGIGTVKDLLR 118 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeE----EEEEEHHHHhc
Confidence 34566799999988888887777677777777776655565567775 3544 46566666553
No 226
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=52.29 E-value=36 Score=27.66 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=28.2
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc----ceEEEEee
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVY 222 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~----nFV~~q~d 222 (320)
.+.|..++.|.+.+|+.|..+. +.+++++.+ ++++..+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~------~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA------PELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh------HHHHHHHHHCCCceEEEEeCC
Confidence 4578899999999999999985 566665543 45555443
No 227
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=52.17 E-value=56 Score=26.66 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=36.1
Q ss_pred HHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCC
Q 020843 207 AVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (320)
Q Consensus 207 ~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~ 262 (320)
++.+.....+-.+-+. .....++..+|++..+|.++++- .|+.+..+.|-.+
T Consensus 52 EL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R--~g~~lG~i~gi~d 103 (107)
T PF07449_consen 52 ELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFR--DGRYLGAIEGIRD 103 (107)
T ss_dssp HHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEE--TTEEEEEEESSST
T ss_pred HHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEE--CCEEEEEecCeec
Confidence 3334444455444443 55567899999999999999998 4999998888554
No 228
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=52.16 E-value=25 Score=23.86 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHH
Q 020843 208 VSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 208 V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
|++++..+++.+.-+..=.+..+....+ .+.++.|+|.. |+. .|.++..+++..|.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~---~~~~~~V~d~~-~~~----~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKN---GISRLPVVDED-GKL----VGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHH---TSSEEEEESTT-SBE----EEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHc---CCcEEEEEecC-CEE----EEEEEHHHHHhhhh
Confidence 5677888888888887767777777777 47888899853 544 46667777777664
No 229
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=50.41 E-value=30 Score=31.41 Aligned_cols=99 Identities=11% Similarity=0.231 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEec
Q 020843 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 248 (320)
Q Consensus 169 f~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp 248 (320)
=.++....++..| +++-|+-+.-+.|+.|++.+ -..-+.++...| +.+++.. ..=+++++++..+|+|+++-
T Consensus 74 Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhL--e~LAk~h~eTrF--ikvnae~--~PFlv~kL~IkVLP~v~l~k- 145 (211)
T KOG1672|consen 74 EKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHL--EILAKRHVETRF--IKVNAEK--APFLVTKLNIKVLPTVALFK- 145 (211)
T ss_pred HHHHHHHhhcCce-EEEEEEcCCCcceehHHHHH--HHHHHhcccceE--EEEeccc--CceeeeeeeeeEeeeEEEEE-
Confidence 4455666666666 55667778889999997643 011123344445 4444433 23367788899999999998
Q ss_pred CCCceEEEEecCC---ChHHHHH-HHHHHHhc
Q 020843 249 ITGQKMRSWCGMV---QPESLLE-DLVPFMDG 276 (320)
Q Consensus 249 ~tG~~v~~~~G~~---~~~~fl~-~L~~fld~ 276 (320)
+|..+-.+.|+. .-++|-. .|..-|.+
T Consensus 146 -~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 146 -NGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred -cCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 488888888873 2356643 34444443
No 230
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=48.99 E-value=27 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~ 51 (320)
-++|..+-+. ||+..-.|++-|+.+++|+|.||...=..+
T Consensus 6 a~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG 45 (296)
T COG0264 6 AALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREKG 45 (296)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 5788899999 999999999999999999999999776544
No 231
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=48.24 E-value=48 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 228 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 228 g~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
..+.++.+++.++|+++| +|+. +.|..+++++.+.|.+
T Consensus 125 ~~~~~~~~~i~~tPt~~i----nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI----NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE----TTCE---EETTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE----CCEE---eCCCCCHHHHHHHHcC
Confidence 345678889999999998 5766 4778899988887753
No 232
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=47.41 E-value=20 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.5
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 020843 22 VGQTAETAVQFLQATSWKLDEAIQLF 47 (320)
Q Consensus 22 t~~~~~~A~~~Le~~~wdLe~Av~~f 47 (320)
-.....+=...|+.|++|+-.||+.+
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 44556777889999999999999876
No 233
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=47.23 E-value=91 Score=23.63 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHhcC------CeEEEEEeCCCCcchhhhhhccC---CCHHHHHHHhcceEEEEeecCChHHHHHHHHcCC
Q 020843 167 GSFEKAKDAASVQD------KWLLVNLQSTKEFSSHMLNRDTW---ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL 237 (320)
Q Consensus 167 gsf~~A~~~Ak~~~------K~LLV~l~~~~~f~c~~lnRdvw---~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v 237 (320)
-++.+|++..++.+ .+++ -+.+...+.--.-.+++. .+..+.++++.+++.+..+..-.+..+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-vvd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 82 (109)
T cd04606 6 WTVGEALEYLRRNADDPETIYYIY-VVDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEKY-- 82 (109)
T ss_pred CcHHHHHHHHHhccCcccceeEEE-EECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHHc--
Confidence 46788887766544 2333 222233332111122222 23468888888877766655545555555444
Q ss_pred CCCcEEEEEecCCCceEEEEecCCChHHHHHH
Q 020843 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLED 269 (320)
Q Consensus 238 ~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~ 269 (320)
..+++.|++. .|+. .|.++..++++.
T Consensus 83 -~~~~~~Vv~~-~~~~----~Gvit~~dll~~ 108 (109)
T cd04606 83 -DLLALPVVDE-EGRL----VGIITVDDVIDV 108 (109)
T ss_pred -CCceeeeECC-CCcE----EEEEEhHHhhhh
Confidence 4567788885 3543 455566666543
No 234
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=46.49 E-value=1.2e+02 Score=22.51 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=50.1
Q ss_pred cccHHHHHHHHHhcC-CeEEEEEeCCCCcchhhhhhc---cCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCc
Q 020843 166 NGSFEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRD---TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~-K~LLV~l~~~~~f~c~~lnRd---vw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P 241 (320)
..+..+|++..++.+ ++++|. . ...+-.-.--++ .+.+..+.++++.+++.+..+..-.+..+....+ ..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~V~-d-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~---~~~ 83 (105)
T cd04599 9 LDSVGRAARLMEKHRIGGLPVV-E-DGKLVGIITSRDVRRAHPNRLVADAMTREVVTISPEASLLEAKRLMEEK---KIE 83 (105)
T ss_pred CCcHHHHHHHHHHcCCCEEEEE-E-CCEEEEEEehHHhhcccccCCHHHHccCCCEEECCCCCHHHHHHHHHHc---CCC
Confidence 447788887765544 555543 2 333221111111 1234568888888877776655555565555555 577
Q ss_pred EEEEEecCCCceEEEEecCCChHHHH
Q 020843 242 VVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
.+.|++. |+. .|.++..+++
T Consensus 84 ~~~Vv~~--~~~----~G~it~~~l~ 103 (105)
T cd04599 84 RLPVLRE--RKL----VGIITKGTIA 103 (105)
T ss_pred EeeEEEC--CEE----EEEEEHHHhc
Confidence 7888884 543 4544444443
No 235
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=44.84 E-value=1.3e+02 Score=22.58 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=50.1
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcc----hh----hhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCC
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFS----SH----MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL 237 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~----c~----~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v 237 (320)
..+..+|.+..++.+...++.+.. ..+- -. .++++ |.+..+.+++..+++.+..+..-.++..+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-- 85 (110)
T cd04595 10 EATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-LGHAPVKDYMSTDVVTVPPDTPLSEVQELMVEH-- 85 (110)
T ss_pred CCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-cccCcHHHHhcCCCEEECCCCcHHHHHHHHHHc--
Confidence 457888888877655333222222 2211 00 11221 244568888888877766665556676776666
Q ss_pred CCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 238 ~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
...++.|++ .|+.+ |.++..+++
T Consensus 86 -~~~~~~V~~--~~~~~----Gvvt~~di~ 108 (110)
T cd04595 86 -DIGRVPVVE--DGRLV----GIVTRTDLL 108 (110)
T ss_pred -CCCeeEEEe--CCEEE----EEEEhHHhh
Confidence 445677777 46544 444444443
No 236
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=44.03 E-value=34 Score=32.59 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=34.1
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
+..+.-.+++ |+++.++|.++|+.++.++-.||-+....
T Consensus 234 dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 234 DRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 4566778888 99999999999999999999999988764
No 237
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=43.65 E-value=86 Score=29.91 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
...|++..+.-++...-+.+-+.++.|..+..= .++++++.++ ..+++-.+.+|....+|.+.-+-..-|++.
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~R------Q~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~ 240 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNR------QEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYH 240 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHH------HHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHH------HHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEE
Confidence 357778888888888877766777777776432 4677888775 688888889998877765543333457777
Q ss_pred EEecC--------CCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 245 VVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 245 Iidp~--------tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|=++. ..+.+....|..+|+.+++++...|+.
T Consensus 241 Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 241 IETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp ESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred eCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 75542 112345557899999999999988864
No 238
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=43.28 E-value=54 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
.+++..+++.++|+++| + |+ .+.|..+.+.+.+.|
T Consensus 119 ~~~~~~~gi~gtPt~~v-~---g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFII-G---DT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEE-C---CE---EecCCCCHHHHHHHh
Confidence 56677889999999776 3 53 468989988887765
No 239
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=43.23 E-value=81 Score=22.84 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=35.9
Q ss_pred EeCCCCcchhhhhhccCCCHHHHHHHhcceE-EEEeecCC-hHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChH
Q 020843 187 LQSTKEFSSHMLNRDTWANEAVSQTISTNFI-FWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPE 264 (320)
Q Consensus 187 l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV-~~q~d~~s-~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~ 264 (320)
+..++|+.|+.. +++|.++=| +-.++++. ++........+..++|.|. ++ |.. .|.| .+|+
T Consensus 4 y~~~~Cp~C~~a----------k~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~-~~---g~~--~~~G-~~~~ 66 (72)
T TIGR02194 4 YSKNNCVQCKMT----------KKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIV-AD---GDL--SWSG-FRPD 66 (72)
T ss_pred EeCCCCHHHHHH----------HHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEE-EC---CCc--EEec-cCHH
Confidence 445789999554 566665322 33445543 3444444445777899985 44 332 3666 5565
Q ss_pred HHH
Q 020843 265 SLL 267 (320)
Q Consensus 265 ~fl 267 (320)
.+.
T Consensus 67 ~~~ 69 (72)
T TIGR02194 67 KLK 69 (72)
T ss_pred HHH
Confidence 543
No 240
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=43.15 E-value=67 Score=23.55 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=34.8
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
-...|+..-+||++.+++.---.|..||-|-+.|++-.+..
T Consensus 5 ~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 5 SRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 46788999999444499999999999999999999988764
No 241
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.64 E-value=71 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=28.2
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~ 271 (320)
...+..+++.++|+++| .|+ ..+.|....+.|.+.|+
T Consensus 157 ~~~a~~~gv~GvP~~vv----~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVV----NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHTTCSSSSEEEE----TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHcCCcccCEEEE----CCE--EEEECCCCHHHHHHHhC
Confidence 45567889999999998 465 45789888888877764
No 242
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=41.92 E-value=30 Score=33.07 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=32.7
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 12 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
..+.-.+.+ ||++.++|...|+.++|++-.||-+....
T Consensus 237 ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 237 RAVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 345557888 99999999999999999999999988654
No 243
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=40.73 E-value=32 Score=28.52 Aligned_cols=36 Identities=3% Similarity=-0.043 Sum_probs=28.5
Q ss_pred hcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc
Q 020843 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN 215 (320)
Q Consensus 178 ~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n 215 (320)
...++.++-|.+..|+.|..+.+.+- +.+.++|...
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~~ 45 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDPG 45 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTTT
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCCC
Confidence 45688999999999999999998886 7777776543
No 244
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.48 E-value=86 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=36.6
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhcCCCc
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPRE 280 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~~~~d 280 (320)
.+.++.+.|++.|+++| | | -..+.|..+++.|...|.+.+...+..
T Consensus 174 ~~~A~e~gI~gVP~fv~-d---~--~~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF-D---G--KYAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHHHCCCccCceEEE-c---C--cEeecCCCCHHHHHHHHHHHHhccccc
Confidence 45677889999999998 3 2 224689999999999999999876543
No 245
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=40.35 E-value=1.7e+02 Score=22.86 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcc----hhhhhh-----------ccCCCHHHHHHHhcceEEEEeec---CChH
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFS----SHMLNR-----------DTWANEAVSQTISTNFIFWQVYD---DTSE 227 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~----c~~lnR-----------dvw~n~~V~~~l~~nFV~~q~d~---~s~e 227 (320)
..+..+|++.-.+.+.+.++.+.+...+- -..+.+ ..|.+..|.++++.+++....+. ....
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~ 88 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENAS 88 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccCc
Confidence 34778888777666655555454433322 112211 23455668899988776544331 1222
Q ss_pred HHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHH
Q 020843 228 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 268 (320)
Q Consensus 228 g~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~ 268 (320)
.....+.+.-...+++.|++...|. +.|.++..+++.
T Consensus 89 l~~~l~~m~~~~~~~lpVvd~~~~~----~~G~it~~di~~ 125 (126)
T cd04640 89 VGDVVETLKASGRQHALVVDREHHQ----IRGIISTSDIAR 125 (126)
T ss_pred HHHHHHHHHHCCCceEEEEECCCCE----EEEEEeHHHHhh
Confidence 2333333444577888899952133 346666666543
No 246
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.03 E-value=4.5e+02 Score=27.19 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=57.0
Q ss_pred cccccccHHHHHHHHHh--cCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc------ceEEEEeecCChHHHHHHH
Q 020843 162 HLMFNGSFEKAKDAASV--QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCT 233 (320)
Q Consensus 162 ~~~~~gsf~~A~~~Ak~--~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~------nFV~~q~d~~s~eg~~~~~ 233 (320)
..|.+-+..+.++.-.. ++...|+.|.++.|..|..+ +++|++ ..-+-.++..+ -.++..
T Consensus 346 ~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~----------~~~l~e~~~~s~~i~~~~~~~~~--~~~~~~ 413 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAEL----------QSFLGEFASLSEKLNSEAVNRGE--EPESET 413 (555)
T ss_pred hhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHH----------HHHHHHHHhcCCcEEEEEecccc--chhhHh
Confidence 33444555555544432 33445666666666566444 444433 22222233322 245677
Q ss_pred HcCCCCCcEEEEEecCCCceE-EEEecCCChHHHHHHHHHHHhc
Q 020843 234 YYKLDSIPVVLVVDPITGQKM-RSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 234 ~Y~v~~~P~i~Iidp~tG~~v-~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.|++...|++.|++. .|+.. -++.|-..-.+|-..|...+.-
T Consensus 414 ~~~v~~~P~~~i~~~-~~~~~~i~f~g~P~G~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 414 LPKITKLPTVALLDD-DGNYTGLKFHGVPSGHELNSFILALYNA 456 (555)
T ss_pred hcCCCcCCEEEEEeC-CCcccceEEEecCccHhHHHHHHHHHHh
Confidence 899999999999974 35443 3567766666666665555543
No 247
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=38.26 E-value=38 Score=32.35 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=33.0
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
...+.-.+.+ ||++.++|++.|+.++|++-.||-+....
T Consensus 231 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 231 ARAVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3455567888 99999999999999999999999987653
No 248
>PTZ00062 glutaredoxin; Provisional
Probab=36.56 E-value=1.9e+02 Score=26.22 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCeEEEEEeC----CCCcchhhhhhccCCCHHHHHHHhcceE-EEEeecC-ChHHHHHH-HHcCCCCCc
Q 020843 169 FEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTISTNFI-FWQVYDD-TSEGKKVC-TYYKLDSIP 241 (320)
Q Consensus 169 f~~A~~~Ak~~~K~LLV~l~~----~~~f~c~~lnRdvw~n~~V~~~l~~nFV-~~q~d~~-s~eg~~~~-~~Y~v~~~P 241 (320)
..+-++..- ..+.|+|+.-+ ++|+.|+. ++++|++.=| +-.+|+. +++.+... +..+..++|
T Consensus 102 ~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~----------~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvP 170 (204)
T PTZ00062 102 TVEKIERLI-RNHKILLFMKGSKTFPFCRFSNA----------VVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYP 170 (204)
T ss_pred HHHHHHHHH-hcCCEEEEEccCCCCCCChhHHH----------HHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCC
Confidence 333344433 44566776664 46777754 4667766322 2234443 34454443 444557889
Q ss_pred EEEEEecCCCceE
Q 020843 242 VVLVVDPITGQKM 254 (320)
Q Consensus 242 ~i~Iidp~tG~~v 254 (320)
.|.| .|+.+
T Consensus 171 qVfI----~G~~I 179 (204)
T PTZ00062 171 QLYV----NGELI 179 (204)
T ss_pred eEEE----CCEEE
Confidence 8884 36554
No 249
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=36.44 E-value=42 Score=29.32 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Ii 246 (320)
.+.+-.++.|++-| .+..+|..|. .++.+++.+.+ -.++++.++|..+|+++|.
T Consensus 101 s~~~~l~~iA~~~g------------LD~~~F~~d~-~S~~~~~~~~~-------------D~~la~~m~I~~~Ptlvi~ 154 (176)
T PF13743_consen 101 SDEELLLEIAEELG------------LDVEMFKEDL-HSDEAKQAFQE-------------DQQLAREMGITGFPTLVIF 154 (176)
T ss_dssp TSHHHHHHHHHHTT--------------HHHHHHHH-TSHHHHHHHHH-------------HHHHHHHTT-SSSSEEEEE
T ss_pred CHHHHHHHHHHHhC------------CCHHHHHHHH-hChHHHHHHHH-------------HHHHHHHcCCCCCCEEEEE
Confidence 34455666666654 4555666554 44555554442 3689999999999999999
Q ss_pred ecCCCceEEEEecCCChH
Q 020843 247 DPITGQKMRSWCGMVQPE 264 (320)
Q Consensus 247 dp~tG~~v~~~~G~~~~~ 264 (320)
+-..++.-..+.|..+-+
T Consensus 155 ~~~~~~~g~~i~g~~~~~ 172 (176)
T PF13743_consen 155 NENNEEYGILIEGYYSYE 172 (176)
T ss_dssp ------------------
T ss_pred eccccccccccccccccc
Confidence 943222222346654433
No 250
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=36.22 E-value=2e+02 Score=23.40 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCC-CcEEEEEecCCCceEEEEecCCChHHHHHHHHH
Q 020843 227 EGKKVCTYYKLDS-IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (320)
Q Consensus 227 eg~~~~~~Y~v~~-~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~ 272 (320)
....+.+.|++.. .-.+++|.. .|..-.++...++++++.+.+..
T Consensus 65 ~~~~lr~~l~~~~~~f~~vLiGK-DG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 65 DIQALRKRLRIPPGGFTVVLIGK-DGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHHHHhCCCCCceEEEEEeC-CCcEEEecCCCCCHHHHHHHHhC
Confidence 3468888999743 445666665 56555567777888877666543
No 251
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.69 E-value=70 Score=25.45 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHH
Q 020843 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (320)
Q Consensus 239 ~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fl 274 (320)
+-..|-|||..||+.|.+| +|+++|+....+-
T Consensus 66 ~~~vVkViD~~T~eVIRqI----P~Ee~l~l~~~l~ 97 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVIRQI----PPEELLDLAKRLR 97 (107)
T ss_dssp TEEEEEEEETTT-SEEEEE-----HHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEEEeC----CcHHHHHHHHHHH
Confidence 3467889999999999886 5888877665543
No 252
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=34.48 E-value=86 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=27.7
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
...++.+++.++|+++| +|+.+..-.+ .+..+|++.|...++
T Consensus 133 ~~~~~~~gi~gTPt~iI----nG~~~~~~~~-~~~~~~~~~~~~~~~ 174 (178)
T cd03019 133 EKLAKKYKITGVPAFVV----NGKYVVNPSA-IGGDDTLQVLDELIE 174 (178)
T ss_pred HHHHHHcCCCCCCeEEE----CCEEEEChhh-ccchhHHHHHHHHHH
Confidence 45667889999999997 4765533222 344447777766654
No 253
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=33.19 E-value=49 Score=31.67 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 11 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
...+.-.+.+ ||++.+.|...|+.++|++-.||-+....
T Consensus 232 ~Ra~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 232 ARAVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 3445567888 89999999999999999999999987653
No 254
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=70 Score=34.20 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=37.2
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 020843 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (320)
Q Consensus 10 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~~ff~~~~ 52 (320)
.++.+...+++ |-+..+|+.-|.+.|+|+|.|++=+|...+
T Consensus 635 ~e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 635 DEESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred ChhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 46778888888 999999999999999999999999998766
No 255
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=32.28 E-value=1.3e+02 Score=25.42 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=31.1
Q ss_pred ceEEEEeec---CChHHHHHHHHcCC--CCCcEEEEEecCCCceEEEE--ecCCChHHHHHH
Q 020843 215 NFIFWQVYD---DTSEGKKVCTYYKL--DSIPVVLVVDPITGQKMRSW--CGMVQPESLLED 269 (320)
Q Consensus 215 nFV~~q~d~---~s~eg~~~~~~Y~v--~~~P~i~Iidp~tG~~v~~~--~G~~~~~~fl~~ 269 (320)
+.++-.+-+ .+.+...++++|++ ..||.+.++-. ..+..-.. .|.+..+.+..-
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~-~~~~pv~~p~~~~~t~~~l~~f 114 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVG-DKEEPVRYPFDGDVTADNLQRF 114 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEES-STTSEEEE-TCS-S-HHHHHHH
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecC-CCCCCccCCccCCccHHHHHHH
Confidence 455555543 34667899999999 67999998883 34444445 566666544433
No 256
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=32.16 E-value=1.2e+02 Score=26.61 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEE
Q 020843 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (320)
Q Consensus 176 Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~ 255 (320)
|-+.+|+++| |..||+..|.|+.+++-|+. .+.++ +.||.|..|..-.
T Consensus 108 a~~~~~pv~i---------~PaMn~~M~~~p~~~~nl~~-----------------L~~~G------~~vi~P~~g~la~ 155 (177)
T TIGR02113 108 ALPPETPKLI---------APAMNTKMYQNPITQRNIKI-----------------LKKIG------YQEIQPKESLLAC 155 (177)
T ss_pred HcCCCCCEEE---------EeCCCHHHhCCHHHHHHHHH-----------------HHHCC------CEEECCCcCcccC
Confidence 4456777776 46799999999999988873 22333 3678888876643
Q ss_pred EEec---CCChHHHHHHHHHH
Q 020843 256 SWCG---MVQPESLLEDLVPF 273 (320)
Q Consensus 256 ~~~G---~~~~~~fl~~L~~f 273 (320)
.-.| ..++++++..+...
T Consensus 156 g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 156 GDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCccccCCCCHHHHHHHHHHh
Confidence 2233 35889888887654
No 257
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=31.80 E-value=1.8e+02 Score=27.96 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=69.9
Q ss_pred ccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEE
Q 020843 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (320)
Q Consensus 165 ~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i 243 (320)
....|++..+..+++..=+-|...++.|..+.. ..++++++.++ ..+++-...+|....+|.+.-+-..-|++
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~ 240 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQN------RQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAY 240 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHH------HHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEE
Confidence 345777777777766554544446666655532 24678888874 68888888888887776553333345666
Q ss_pred EEEecC-------CC-ceEEEEecCCChHHHHHHHHHHHhcC
Q 020843 244 LVVDPI-------TG-QKMRSWCGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 244 ~Iidp~-------tG-~~v~~~~G~~~~~~fl~~L~~fld~~ 277 (320)
.|=++. .| +.+....|..+|+.+++++..+|...
T Consensus 241 ~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 241 LIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred EECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 654431 11 23444568899999999999999864
No 258
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=30.63 E-value=82 Score=26.49 Aligned_cols=24 Identities=8% Similarity=-0.195 Sum_probs=20.6
Q ss_pred cCCeEEEEEeCCCCcchhhhhhcc
Q 020843 179 QDKWLLVNLQSTKEFSSHMLNRDT 202 (320)
Q Consensus 179 ~~K~LLV~l~~~~~f~c~~lnRdv 202 (320)
..+..++.|.+..|+.|..+...+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHH
Confidence 578899999999999999997443
No 259
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=30.43 E-value=1.7e+02 Score=26.00 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEec------CCChHHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG------MVQPESLLEDLV 271 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G------~~~~~~fl~~L~ 271 (320)
.+.++.+++.++|+++| +|+.+....+ .-+.+++++.+.
T Consensus 157 ~~~a~~~gI~gtPtfiI----nGky~v~~~~~~~~~~~~~~~~~~~~i~ 201 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV----NGKYMVNNQGMDTSSMDVYVQQYADVVK 201 (207)
T ss_pred HHHHHHcCCCCCCEEEE----CCEEEEccccccccchhhhHHHHHHHHH
Confidence 45677899999999997 4665433333 114566665444
No 260
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.42 E-value=1.5e+02 Score=21.45 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHcCCCCCcEEEEEe
Q 020843 229 KKVCTYYKLDSIPVVLVVD 247 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iid 247 (320)
.++++.+++.+.|++++-+
T Consensus 73 ~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 73 TALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHcCCCCCCEEEECC
Confidence 4556678889999999876
No 261
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=30.40 E-value=94 Score=27.65 Aligned_cols=44 Identities=7% Similarity=-0.033 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcc--eEEEEeec
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN--FIFWQVYD 223 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n--FV~~q~d~ 223 (320)
+|.-+|.|.+-.|+-|..|+..+..-+.+++.+.++ |+.+.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f 82 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEF 82 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecccc
Confidence 466689999999999999987544557888887654 66555543
No 262
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=30.22 E-value=3.3e+02 Score=22.75 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=39.1
Q ss_pred HHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecC-CChHHHHHHHHH
Q 020843 207 AVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVP 272 (320)
Q Consensus 207 ~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~-~~~~~fl~~L~~ 272 (320)
.+.+.+++.+.|+... ...++..|++.. |.|++.-+. .+......|. .+++++..-+..
T Consensus 14 ~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~-~~~~~~y~~~~~~~~~l~~fI~~ 73 (184)
T PF13848_consen 14 EAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKF-DEKPVVYDGDKFTPEELKKFIKK 73 (184)
T ss_dssp HHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECT-TTSEEEESSSTTSHHHHHHHHHH
T ss_pred HHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccC-CCCceecccccCCHHHHHHHHHH
Confidence 4556666667777765 223677799887 999999863 3455567786 677765555444
No 263
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=29.51 E-value=53 Score=31.42 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCC
Q 020843 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT 225 (320)
Q Consensus 180 ~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s 225 (320)
+|+.+|=+|+-..-.-.+|+. .|..+.+.++++ ||+++.+|...
T Consensus 22 ~kp~ilT~HDvGlNh~scF~~-ff~~~~m~~i~~-~f~i~Hi~aPG 65 (283)
T PF03096_consen 22 NKPAILTYHDVGLNHKSCFQG-FFNFEDMQEILQ-NFCIYHIDAPG 65 (283)
T ss_dssp TS-EEEEE--TT--HHHHCHH-HHCSHHHHHHHT-TSEEEEEE-TT
T ss_pred CCceEEEeccccccchHHHHH-HhcchhHHHHhh-ceEEEEEeCCC
Confidence 899999999986444444543 344566666665 89999999764
No 264
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=28.97 E-value=33 Score=26.99 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.5
Q ss_pred chhhhhhccCCCHHHHHHHhcc
Q 020843 194 SSHMLNRDTWANEAVSQTISTN 215 (320)
Q Consensus 194 ~c~~lnRdvw~n~~V~~~l~~n 215 (320)
.-+.+-+.|++||+|++||++|
T Consensus 20 ~~~~l~~~vl~dp~V~~Fl~~h 41 (94)
T PF07319_consen 20 RYEQLKQEVLSDPEVQAFLQEH 41 (94)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHS
T ss_pred HHHHHHHHHHcCHHHHHHHHHh
Confidence 3456778999999999999974
No 265
>PRK07738 flagellar protein FlaG; Provisional
Probab=28.94 E-value=1e+02 Score=25.58 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 239 ~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
.-+.|-|||..||+.+++ ++|+++|+.+..+.+
T Consensus 75 ~~~vVkVvD~~T~EVIRQ----IPpEe~L~l~~~m~e 107 (117)
T PRK07738 75 NEYYVQVVDERTNEVIRE----IPPKKLLDMYAAMME 107 (117)
T ss_pred CcEEEEEEECCCCeeeee----CCCHHHHHHHHHHHH
Confidence 467899999999999988 578888887777655
No 266
>PRK08452 flagellar protein FlaG; Provisional
Probab=28.90 E-value=1e+02 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 239 ~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.-+.|-|+|..||+.+++ ++|+++|+....+.+.
T Consensus 82 ~~~vVkVvD~~T~eVIRq----IP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 82 KGLVVSVKEANGGKVIRE----IPSKEAIELMEYMRDV 115 (124)
T ss_pred CcEEEEEEECCCCceeee----CCCHHHHHHHHHHHHh
Confidence 458899999999999987 5688888877766543
No 267
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=28.62 E-value=1.9e+02 Score=25.47 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceE
Q 020843 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (320)
Q Consensus 175 ~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v 254 (320)
.|-+++|+|+| +..||...|.|+.+++=+.. + +.++ +.||.|..|..-
T Consensus 108 ~a~~~~~pvvi---------~Pamn~~m~~~p~~~~Nl~~----------------L-~~~G------~~vi~p~~g~la 155 (182)
T PRK07313 108 LALPATTPKLI---------APAMNTKMYENPATQRNLKT----------------L-KEDG------VQEIEPKEGLLA 155 (182)
T ss_pred HHcCCCCCEEE---------EECCCHHHhcCHHHHHHHHH----------------H-HHCC------CEEECCCCCccc
Confidence 45567888877 34789999999988877762 2 2343 567888766543
Q ss_pred EEEec---CCChHHHHHHHHHHHhc
Q 020843 255 RSWCG---MVQPESLLEDLVPFMDG 276 (320)
Q Consensus 255 ~~~~G---~~~~~~fl~~L~~fld~ 276 (320)
..-.| ..+++++++.+..++..
T Consensus 156 ~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 156 CGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred cCCccCCCCCCHHHHHHHHHHHhcc
Confidence 22233 36899999998887753
No 268
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.58 E-value=1.1e+02 Score=26.33 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L 270 (320)
.+.+..+++.++|+++| +|+. .+.|..+.+.|.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv----~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF----NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE----CCeE--eecCCCCHHHHHHHh
Confidence 45566789999999997 3432 368999999888765
No 269
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=28.29 E-value=60 Score=21.87 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=16.7
Q ss_pred EEEecCCCceEEEE----ecCCChHHHHH
Q 020843 244 LVVDPITGQKMRSW----CGMVQPESLLE 268 (320)
Q Consensus 244 ~Iidp~tG~~v~~~----~G~~~~~~fl~ 268 (320)
.||||.||+++..- .|.++++....
T Consensus 12 Giidp~tg~~lsv~~A~~~glId~~~~~~ 40 (45)
T PF00681_consen 12 GIIDPETGERLSVEEAIQRGLIDSDTAQK 40 (45)
T ss_dssp SEEETTTTEEEEHHHHHHTTSS-HHHHHH
T ss_pred eEEeCCCCeEEcHHHHHHCCCcCHHHHHH
Confidence 48999999998532 47777764443
No 270
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.09 E-value=2.7e+02 Score=21.10 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCC-CCcc----hhhhhh-----ccC-CCHHHHHHHhcceEEEEeecCChHHHHHHHHc
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQST-KEFS----SHMLNR-----DTW-ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY 235 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~-~~f~----c~~lnR-----dvw-~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y 235 (320)
.+..+|++...+.+...++...+. ..+- -..+.+ +.. .+..+.+++..++++...+..-.+..+....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 89 (114)
T cd04630 10 ATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERT 89 (114)
T ss_pred CcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHc
Confidence 478888888765553333333332 2221 111111 111 22358888888887766666556666666555
Q ss_pred CCCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 236 ~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
..+.+.|++. |+.+ |.++..+++
T Consensus 90 ---~~~~~~Vvd~--~~~~----Gvi~~~dl~ 112 (114)
T cd04630 90 ---NIRRAPVVEN--NELI----GIISLTDIF 112 (114)
T ss_pred ---CCCEeeEeeC--CEEE----EEEEHHHhh
Confidence 6677778884 5443 444444443
No 271
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=27.95 E-value=3.1e+02 Score=27.62 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCCccccc-cccHHHHHHHHHhc----CCeEEEEEeCC-CCcchhhhhhcc---CCCHHHHHHHhcceEEEEeecCChHH
Q 020843 158 RPPFHLMF-NGSFEKAKDAASVQ----DKWLLVNLQST-KEFSSHMLNRDT---WANEAVSQTISTNFIFWQVYDDTSEG 228 (320)
Q Consensus 158 ~Ppf~~~~-~gsf~~A~~~Ak~~----~K~LLV~l~~~-~~f~c~~lnRdv---w~n~~V~~~l~~nFV~~q~d~~s~eg 228 (320)
.+.+..+. +-+..+|++.-++. ...-.+++.++ .+..--.--|++ ..+..|.++++.+++....+.+-.+.
T Consensus 138 t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~~~v~~im~~~~~~v~~~~~~~ea 217 (449)
T TIGR00400 138 TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPEEILSSIMRSSVFSIVGVNDQEEV 217 (449)
T ss_pred cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCCCcHHHHhCCCCeeECCCCCHHHH
Confidence 34444333 34888888877641 22233444433 222211111232 24557999999888877666666777
Q ss_pred HHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
.+..+.| ....+.|+|. .|+ +.|.++.+++++.+.+-
T Consensus 218 l~~m~~~---~~~~lpVVD~-~g~----lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 218 ARLIQKY---DFLAVPVVDN-EGR----LVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHHHHHc---CCCEEeEEcC-CCe----EEEEEEHHHHHHHHHhh
Confidence 7777777 5667777885 353 45777888888877664
No 272
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=27.66 E-value=2.3e+02 Score=30.05 Aligned_cols=75 Identities=24% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHhcceEEEEeecC-ChHHHHHHHHcCCCCCcEEEEEecCC---Cce-EEEE----ecCCChHHHHHHHHHHHhcC
Q 020843 207 AVSQTISTNFIFWQVYDD-TSEGKKVCTYYKLDSIPVVLVVDPIT---GQK-MRSW----CGMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 207 ~V~~~l~~nFV~~q~d~~-s~eg~~~~~~Y~v~~~P~i~Iidp~t---G~~-v~~~----~G~~~~~~fl~~L~~fld~~ 277 (320)
.|.+.|+.+=|-..+|.. ..-|.++... ....+|+++||..+. |.. ++.. ...++.+++++.|.+-++.+
T Consensus 517 eIa~~Lr~~GirV~lDdr~~slgkKir~A-~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~~~ 595 (613)
T PRK03991 517 EVADKLEAAGIRVDVDDRDESLGKKIRDA-GKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETKGY 595 (613)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHH-HHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHhcC
Confidence 455566655445555543 3345555432 346899999999752 332 2221 12467899999999999887
Q ss_pred CCccc
Q 020843 278 PREQH 282 (320)
Q Consensus 278 ~~d~~ 282 (320)
|.-..
T Consensus 596 p~~~~ 600 (613)
T PRK03991 596 PYRPL 600 (613)
T ss_pred CCCCC
Confidence 77544
No 273
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.31 E-value=2.7e+02 Score=20.84 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=49.8
Q ss_pred cccHHHHHHHHHhcC-CeEEEEEeCCCCcc----h----hhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcC
Q 020843 166 NGSFEKAKDAASVQD-KWLLVNLQSTKEFS----S----HMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 236 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~-K~LLV~l~~~~~f~----c----~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~ 236 (320)
..+..+|++...+.+ .++.| +.+...+- - ..+....+.+..+.++++.+++....+..-.+..+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~v-~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~-- 85 (112)
T cd04624 9 DTSIREAAKLMAEENVGSVVV-VDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRK-- 85 (112)
T ss_pred CCcHHHHHHHHHHcCCCEEEE-ECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHHHHHH--
Confidence 447888887776544 34433 33222211 1 112222344557888888887776655444444444433
Q ss_pred CCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 237 v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
...+.+.|++. +|..+ |.++..+++
T Consensus 86 -~~~~~~~Vv~~-~g~~~----Gilt~~dl~ 110 (112)
T cd04624 86 -NNIRHHLVVDK-GGELV----GVISIRDLV 110 (112)
T ss_pred -cCccEEEEEcC-CCcEE----EEEEHHHhc
Confidence 35688888986 46543 444444443
No 274
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=26.87 E-value=1.2e+02 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=28.5
Q ss_pred HHHHHcCCCCCcEEEEEecCC----------CceEEEEecCCChHHHHHHH
Q 020843 230 KVCTYYKLDSIPVVLVVDPIT----------GQKMRSWCGMVQPESLLEDL 270 (320)
Q Consensus 230 ~~~~~Y~v~~~P~i~Iidp~t----------G~~v~~~~G~~~~~~fl~~L 270 (320)
.+.++|+++..|++++..... .+....+.|.++.+..|+++
T Consensus 62 ~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~aLe~i 112 (113)
T PF09673_consen 62 RLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYALEKI 112 (113)
T ss_pred hHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHHHHhh
Confidence 467789999999999998710 12234567777777666554
No 275
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=25.69 E-value=3e+02 Score=20.87 Aligned_cols=94 Identities=9% Similarity=0.026 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeC---CCCcc----hhhhhhccCCCHHHHHHHhcceEEEEe--ecCChHHHHHHHHcC
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQS---TKEFS----SHMLNRDTWANEAVSQTISTNFIFWQV--YDDTSEGKKVCTYYK 236 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~---~~~f~----c~~lnRdvw~n~~V~~~l~~nFV~~q~--d~~s~eg~~~~~~Y~ 236 (320)
..+..+|++...+.+.+.++.+-. ..++- .+.+...--.+..|.++++.++..+.. +..-.+..+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~- 88 (114)
T cd04602 10 DHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTPREVLVVAPTGITLEEANEILRES- 88 (114)
T ss_pred CCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCCCceEEECCCCCCHHHHHHHHHhc-
Confidence 457888888876655433332332 22321 112111000123488888887777766 33334455555444
Q ss_pred CCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 237 v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
..+++.|++. .|+ +.|.++.++++
T Consensus 89 --~~~~~pVv~~-~~~----~~Gvit~~di~ 112 (114)
T cd04602 89 --KKGKLPIVND-DGE----LVALVTRSDLK 112 (114)
T ss_pred --CCCceeEECC-CCe----EEEEEEHHHhh
Confidence 5667777885 354 34555555543
No 276
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=25.68 E-value=2.8e+02 Score=28.82 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=63.1
Q ss_pred hhcCCCccccc-cccHHHHHHHHHhcC-CeEEEEEeCCC-Cc----chhhhhh-----ccCCCHHHHHHHhcceEEEEee
Q 020843 155 SLYRPPFHLMF-NGSFEKAKDAASVQD-KWLLVNLQSTK-EF----SSHMLNR-----DTWANEAVSQTISTNFIFWQVY 222 (320)
Q Consensus 155 ~lf~Ppf~~~~-~gsf~~A~~~Ak~~~-K~LLV~l~~~~-~f----~c~~lnR-----dvw~n~~V~~~l~~nFV~~q~d 222 (320)
+.-.+++..+. +.+..+|++...+.+ +++.| .++. .+ .-..+.+ +-+.+..+.++++.+++....+
T Consensus 451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~V--vD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d 528 (574)
T PRK01862 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYV--VDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPD 528 (574)
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEE--EcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCC
Confidence 33344444443 348899988776544 44433 2321 11 1112222 2223456888888887766554
Q ss_pred cCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHHHHHHHH
Q 020843 223 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (320)
Q Consensus 223 ~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~f 273 (320)
.+-.+..+....+ ...++.|+|. +|. .+..|.++..++++.+.+.
T Consensus 529 ~~L~~al~~m~~~---~~~~lpVVd~-~~~--~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 529 MPLGDALEHFMAF---QGERLPVVES-EAS--PTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred CCHHHHHHHHHhc---CCCeeeeEeC-CCC--CeEEEEEEHHHHHHHHHhh
Confidence 4445666665555 5667778885 331 2345778899999887654
No 277
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=24.82 E-value=3e+02 Score=20.59 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=52.2
Q ss_pred CccccccccHHHHHHHHHhcCCeEEEEEeCCCCcc----hhh-----hhhccCCCHHHHHHHhcceEEEEeecCChHHHH
Q 020843 160 PFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFS----SHM-----LNRDTWANEAVSQTISTNFIFWQVYDDTSEGKK 230 (320)
Q Consensus 160 pf~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~----c~~-----lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~ 230 (320)
|..+-..-+..+|++...+.+...++.+-....+. -.. +....|.+..+.+++..+++....+..-.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKARW 82 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHHH
Confidence 33333345778888776655433333232222321 111 233445566788888877776655443344443
Q ss_pred HHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 231 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 231 ~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
.. .-...+.+.|++. .|+. .|.++..+++
T Consensus 83 ~~---~~~~~~~~~Vvd~-~g~~----~Gvvt~~dl~ 111 (113)
T cd04615 83 LM---SNNNISRLPVLDD-KGKV----GGIVTEDDIL 111 (113)
T ss_pred HH---HHcCCCeeeEECC-CCeE----EEEEEHHHhh
Confidence 33 3345677888885 4543 3445555543
No 278
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.54 E-value=3.3e+02 Score=26.04 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=65.1
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
...|++..+..++...=+.+ .++.|..++. ..++++++-++ ..+++-...+|....+|.+.-.-..-|++.
T Consensus 169 ~~~~~~iv~~l~~~~~~~~v--~~TIC~aT~~------RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~ 240 (281)
T PRK12360 169 PELWEDILNVIKLKSKELVF--FNTICSATKK------RQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFH 240 (281)
T ss_pred HHHHHHHHHHHHHhCccccc--CCCcchhhhh------HHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEE
Confidence 45677777776666554533 4555555432 24568888764 688888888888776665433323456666
Q ss_pred EEecC-------CC-ceEEEEecCCChHHHHHHHHHHHhc
Q 020843 245 VVDPI-------TG-QKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 245 Iidp~-------tG-~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|=++. .| ..+....|..+|+.+++.+...|..
T Consensus 241 Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 241 IETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred ECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 64442 11 1244456889999999999988864
No 279
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=23.51 E-value=1.1e+02 Score=25.62 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=27.8
Q ss_pred CCcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 239 ~~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
.-++|-|+|..||+.+.+ ++|+++|+.+..+.+.
T Consensus 78 g~~vVkI~d~~TgeVIRq----IPpee~L~l~~r~~d~ 111 (120)
T COG1334 78 GELVVKIIDKDTGEVIRQ----IPPEEALELAARMRDV 111 (120)
T ss_pred CcEEEEEEECCCCcchhh----CChHHHHHHHHHHHHh
Confidence 468999999999998877 5799988887777654
No 280
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=23.13 E-value=1.2e+02 Score=30.68 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=40.5
Q ss_pred hhhcCCCccccccccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc
Q 020843 154 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST 214 (320)
Q Consensus 154 ~~lf~Ppf~~~~~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~ 214 (320)
.+.|.|=..|+.--+++|+++.=.++.|+|.+|+.+. +...|++++++
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~-------------n~~~vkr~l~~ 381 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSN-------------NEKLVKRFLTE 381 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecC-------------CHHHHHHHHHh
Confidence 4789998888888899999999999999999999987 34566667764
No 281
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=23.11 E-value=2.3e+02 Score=21.25 Aligned_cols=92 Identities=9% Similarity=0.128 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCCcc----hhhhhhccCCCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcE
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQSTKEFS----SHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~~~f~----c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~ 242 (320)
.+..+|+....+.+...++.+.....+. ...+-+ .-.+..+.+++..++++...+..-.+..+....++. -.
T Consensus 11 ~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~---~~ 86 (108)
T cd04596 11 DTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG-KDPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGI---EM 86 (108)
T ss_pred CCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc-ccccccHHHHhcCCCeEECCCCCHHHHHHHHHHcCC---Ce
Confidence 4678888777665543222222222111 111111 113456889998888887777666677766666655 45
Q ss_pred EEEEecCCCceEEEEecCCChHHHH
Q 020843 243 VLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 243 i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
+.|++. .|+.+ |.++..+++
T Consensus 87 ~~Vv~~-~~~~~----G~it~~di~ 106 (108)
T cd04596 87 LPVVDD-NKKLL----GIISRQDVL 106 (108)
T ss_pred eeEEcC-CCCEE----EEEEHHHhh
Confidence 556775 46443 444555443
No 282
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=22.69 E-value=1.3e+02 Score=19.20 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.3
Q ss_pred EEEEEecCCCceEEEEe
Q 020843 242 VVLVVDPITGQKMRSWC 258 (320)
Q Consensus 242 ~i~Iidp~tG~~v~~~~ 258 (320)
+|.-||.+||+++++..
T Consensus 11 ~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 11 YLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEEETTTTSEEEEEE
T ss_pred EEEEEECCCCCEEEeee
Confidence 67889999999998763
No 283
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.49 E-value=1.4e+02 Score=29.22 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHhcCCeEEEEEeCC----CCcchhhhhhccCCCHHHHHHHh-----cc---eEEEEeecCChHHHHHHHH
Q 020843 167 GSFEKAKDAASVQDKWLLVNLQST----KEFSSHMLNRDTWANEAVSQTIS-----TN---FIFWQVYDDTSEGKKVCTY 234 (320)
Q Consensus 167 gsf~~A~~~Ak~~~K~LLV~l~~~----~~f~c~~lnRdvw~n~~V~~~l~-----~n---FV~~q~d~~s~eg~~~~~~ 234 (320)
.+|..-++ +.-++--++|-|.+. .|.-|+..+++. ..|.+-.+ .| -.|-.+| -.|+.+..+.
T Consensus 48 d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef---~iva~S~r~~~~~sn~tklFF~~Vd--~~e~p~~Fq~ 121 (331)
T KOG2603|consen 48 DKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEF---QIVANSWRYNSPFSNGTKLFFCMVD--YDESPQVFQQ 121 (331)
T ss_pred cchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHH---HHHHHHhhccCCCCCcceEEEEEEe--ccccHHHHHH
Confidence 35555544 444455566666554 355555554321 11222111 11 2233444 4457888999
Q ss_pred cCCCCCcEEEEEecCCCceEEE--Ee-cCCChHHHHHHHHHHHhcC
Q 020843 235 YKLDSIPVVLVVDPITGQKMRS--WC-GMVQPESLLEDLVPFMDGG 277 (320)
Q Consensus 235 Y~v~~~P~i~Iidp~tG~~v~~--~~-G~~~~~~fl~~L~~fld~~ 277 (320)
++++..||+.++.|.+|.+.+. .. +...++ .+++-+|++..
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~--Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFE--AEQIAQFVADR 165 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchh--HHHHHHHHHHh
Confidence 9999999999999988876522 11 112333 56666666553
No 284
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.39 E-value=4e+02 Score=25.42 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=65.6
Q ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCCcchhhhhhccCCCHHHHHHHhc-ceEEEEeecCChHHHHHHHHcCCCCCcEEE
Q 020843 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~K~LLV~l~~~~~f~c~~lnRdvw~n~~V~~~l~~-nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~ 244 (320)
...|++..+.-++..--.=+-+.++.|..++. ..++++++.++ ..+++-...+|....+|.+.-.-..-|++.
T Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~------RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~ 239 (280)
T TIGR00216 166 QEDTKEIVAELKARVPQKEVPVFNTICYATQN------RQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYL 239 (280)
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCCcccccHH------HHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEE
Confidence 34666666665554410223344555655532 24678888874 688888888888877765544333567777
Q ss_pred EEecC--------CCceEEEEecCCChHHHHHHHHHHHhc
Q 020843 245 VVDPI--------TGQKMRSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 245 Iidp~--------tG~~v~~~~G~~~~~~fl~~L~~fld~ 276 (320)
|=++. ..+.+..-.|..+|+.+++++...|..
T Consensus 240 Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 240 IETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred ECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 65442 112344456889999999999988864
No 285
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=21.72 E-value=1.7e+02 Score=29.89 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhcCC----eEEEEEeCCCC-cchhhhhhccC---CCHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCC
Q 020843 168 SFEKAKDAASVQDK----WLLVNLQSTKE-FSSHMLNRDTW---ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS 239 (320)
Q Consensus 168 sf~~A~~~Ak~~~K----~LLV~l~~~~~-f~c~~lnRdvw---~n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~ 239 (320)
+-++|+..=++..+ .=-+|+.+... .---.=-|+++ .+..|++++++.++.+..+.+-.+..++.++|.
T Consensus 150 Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~yd--- 226 (451)
T COG2239 150 TVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMEDDVVSVLADDDQEEVARLFEKYD--- 226 (451)
T ss_pred CHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcccceeecccCCHHHHHHHHHHhC---
Confidence 66666666554433 34455554422 11001113333 345789999999999999999999999999995
Q ss_pred CcEEEEEecCCCceEEEEecCCChHHHHHHHHHHHh
Q 020843 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (320)
Q Consensus 240 ~P~i~Iidp~tG~~v~~~~G~~~~~~fl~~L~~fld 275 (320)
+..+-+||. .|+. -|.++.++.++.+.+--+
T Consensus 227 l~a~PVVd~-~~~L----iG~itiDDiidvi~eEa~ 257 (451)
T COG2239 227 LLAVPVVDE-DNRL----IGIITIDDIIDVIEEEAT 257 (451)
T ss_pred CeecceECC-CCce----eeeeeHHHHHHHHHHHHH
Confidence 455557775 3544 466788999888876543
No 286
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=21.56 E-value=3.2e+02 Score=23.40 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=31.3
Q ss_pred EEEEEeC-----CCCcchhhhhhccCCCHHHHHHHhcceE-EEEeecCC-hH-HHHHHHHcCC----CCCcEEEE
Q 020843 183 LLVNLQS-----TKEFSSHMLNRDTWANEAVSQTISTNFI-FWQVYDDT-SE-GKKVCTYYKL----DSIPVVLV 245 (320)
Q Consensus 183 LLV~l~~-----~~~f~c~~lnRdvw~n~~V~~~l~~nFV-~~q~d~~s-~e-g~~~~~~Y~v----~~~P~i~I 245 (320)
|.||..+ .+|+.|+ .++++|++.=| +-..|++. ++ ..++.+.+.. .++|.|+|
T Consensus 2 VvlYttsl~giR~t~~~C~----------~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCN----------NVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHH----------HHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566665 2788995 45677765433 45556643 22 4455555443 67888874
No 287
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=21.41 E-value=3.4e+02 Score=19.98 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHhcC-CeEEEEEeCCCCcchhhhhhccCC--CHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcE
Q 020843 166 NGSFEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRDTWA--NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (320)
Q Consensus 166 ~gsf~~A~~~Ak~~~-K~LLV~l~~~~~f~c~~lnRdvw~--n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~ 242 (320)
..+..+|++..++.+ +++.|. -....+---.-..++.. ...+.+++..+++....+..-.+..++... ...+.
T Consensus 9 ~~~~~~a~~~~~~~~~~~~~v~-d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 84 (106)
T cd04582 9 DDPLSDALGLMDDSDLRALTVV-DADGQPLGFVTRREAARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFA---HDMSW 84 (106)
T ss_pred CCcHHHHHHHHHhcCCCEEEEE-CCCCCEEEEEeHHHHHHhcccchhhhcccCCEEECCCCCHHHHHHHHHH---CCCCe
Confidence 347888887765554 343332 22222210001111111 123677777666554443333444444444 46788
Q ss_pred EEEEecCCCceEEEEecCCChHHHH
Q 020843 243 VLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 243 i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
+.|++. .|+.+ |.++..+++
T Consensus 85 ~~Vv~~-~~~~~----Gvi~~~~l~ 104 (106)
T cd04582 85 LPCVDE-DGRYV----GEVTQRSIA 104 (106)
T ss_pred eeEECC-CCcEE----EEEEHHHhh
Confidence 899985 45554 444444443
No 288
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=20.87 E-value=5.2e+02 Score=24.23 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=62.5
Q ss_pred hhhhhcCCC--ccccc-cccHHHHHHHHHhcCCeEEEEEeCCCCc----chhhhhh----ccCCCHHHHHHHhcceEEEE
Q 020843 152 NLASLYRPP--FHLMF-NGSFEKAKDAASVQDKWLLVNLQSTKEF----SSHMLNR----DTWANEAVSQTISTNFIFWQ 220 (320)
Q Consensus 152 ~l~~lf~Pp--f~~~~-~gsf~~A~~~Ak~~~K~LLV~l~~~~~f----~c~~lnR----dvw~n~~V~~~l~~nFV~~q 220 (320)
...++-+.. +..+. ..+..+|.+.-.+.+.+.++.+.....+ ....+.+ ..+.+..|.+++..+++...
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~ 277 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQ 277 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEEC
Confidence 344555443 44444 4589999887766665544434333221 2112221 22334558899998888766
Q ss_pred eecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 221 VYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 221 ~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
.+..-.++.+....+ ...++.|+|. .|+ +.|.++..+++
T Consensus 278 ~~~~l~~a~~~m~~~---~~~~lpVvd~-~~~----lvGvIt~~di~ 316 (321)
T PRK11543 278 AQSRAIDAKEILMKR---KITAAPVVDE-NGK----LTGAINLQDFY 316 (321)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEEcC-CCe----EEEEEEHHHHH
Confidence 666556677766666 5667777885 353 34656666655
No 289
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=49 Score=30.19 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=59.8
Q ss_pred cccHHH-HHHHHHhcCCeEEEEEeCCC-CcchhhhhhccCCCHHHHHHHhcceEEEEeecCC------hHHHHHHHH---
Q 020843 166 NGSFEK-AKDAASVQDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT------SEGKKVCTY--- 234 (320)
Q Consensus 166 ~gsf~~-A~~~Ak~~~K~LLV~l~~~~-~f~c~~lnRdvw~n~~V~~~l~~nFV~~q~d~~s------~eg~~~~~~--- 234 (320)
.|+|-+ |.+.+...+|.+-|+|+.-. +..+..+ +..+.++...+-|.+.+-.+.+|+-- ..|.+-...
T Consensus 56 PGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i-q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~ 134 (205)
T COG0293 56 PGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL-QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARS 134 (205)
T ss_pred CCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE-eeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHH
Confidence 389988 77778888899999999764 3344444 44455666666666555554433211 011100000
Q ss_pred -cCCCCCcEE--EEEecCCCceE-EEEecCCChHHHHHHHHHHHhc
Q 020843 235 -YKLDSIPVV--LVVDPITGQKM-RSWCGMVQPESLLEDLVPFMDG 276 (320)
Q Consensus 235 -Y~v~~~P~i--~Iidp~tG~~v-~~~~G~~~~~~fl~~L~~fld~ 276 (320)
+-+..-+.+ .++.| +|.-+ +.++| -+.++++..|...+..
T Consensus 135 ~~L~~~a~~~a~~vL~~-~G~fv~K~fqg-~~~~~~l~~~~~~F~~ 178 (205)
T COG0293 135 MYLCELALEFALEVLKP-GGSFVAKVFQG-EDFEDLLKALRRLFRK 178 (205)
T ss_pred HHHHHHHHHHHHHeeCC-CCeEEEEEEeC-CCHHHHHHHHHHhhce
Confidence 001111222 23444 67765 45666 5678888888877665
No 290
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=20.61 E-value=3.7e+02 Score=20.05 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=34.9
Q ss_pred CHHHHHHHhcceEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEEecCCChHHHH
Q 020843 205 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (320)
Q Consensus 205 n~~V~~~l~~nFV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~~G~~~~~~fl 267 (320)
+..+.++++.+++....+..-.+..++...++.. ++.|++. |+. .|.++..+++
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~~Vv~~--~~~----~Gvit~~di~ 112 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPK---RYPVVDD--GKL----VGQISRRDVL 112 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCC---ccCEEEC--CEE----EEEEEHHHHh
Confidence 4468888888877766666656777777777554 4557773 543 4555555554
No 291
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.61 E-value=3.1e+02 Score=25.64 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=50.0
Q ss_pred ccccccHHHHHHHHHh---cCCeEEEEEeCCC-------CcchhhhhhccCCCH-HHHHHH-----hcceEEEEeecCCh
Q 020843 163 LMFNGSFEKAKDAASV---QDKWLLVNLQSTK-------EFSSHMLNRDTWANE-AVSQTI-----STNFIFWQVYDDTS 226 (320)
Q Consensus 163 ~~~~gsf~~A~~~Ak~---~~K~LLV~l~~~~-------~f~c~~lnRdvw~n~-~V~~~l-----~~nFV~~q~d~~s~ 226 (320)
+.+-.||++|.+.+++ .++-||+-.=+.. -..+..+.|.+ ..+ .+...+ .+|.|..+.-....
T Consensus 109 ~~~v~~~~ea~~~~~~~~~~~~~i~lttG~k~l~~f~~~~~~~~~~~RvL-P~~~~l~~~~~~G~~~~~iia~~gPfs~e 187 (256)
T TIGR00715 109 IIEVPDIEEATRVAYQPYLRGKRVFLTAGASWLSHFSLSQDEAVVFVRVL-PYPQALAQALKLGFPSDRIIAMRGPFSEE 187 (256)
T ss_pred eEEeCCHHHHHHHhhhccccCCcEEEecCcchHHHHhhccCCceEEEEEC-CCchhhHHHHHcCCChhcEEEEeCCCCHH
Confidence 4556799999998877 5555555332221 11355666655 555 444444 46789999999988
Q ss_pred HHHHHHHHcCCC
Q 020843 227 EGKKVCTYYKLD 238 (320)
Q Consensus 227 eg~~~~~~Y~v~ 238 (320)
....+.+.|+++
T Consensus 188 ~n~al~~~~~i~ 199 (256)
T TIGR00715 188 LEKALLREYRID 199 (256)
T ss_pred HHHHHHHHcCCC
Confidence 889999999864
No 292
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=20.58 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcC
Q 020843 26 AETAVQFLQATSWKLDEAIQLFYVG 50 (320)
Q Consensus 26 ~~~A~~~Le~~~wdLe~Av~~ff~~ 50 (320)
-+.|...|+..|=++..||.+||..
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~q 37 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQ 37 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4679999999999999999999985
No 293
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=20.55 E-value=2.2e+02 Score=24.02 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHHHcCCCCCcEEEEEecCC---C------ceEEEEecCCChHHHHHHHH
Q 020843 229 KKVCTYYKLDSIPVVLVVDPIT---G------QKMRSWCGMVQPESLLEDLV 271 (320)
Q Consensus 229 ~~~~~~Y~v~~~P~i~Iidp~t---G------~~v~~~~G~~~~~~fl~~L~ 271 (320)
..+.+.|+++..|+++++.... + .....+.|.++.+..|+.+.
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 3467789999999999998631 0 12345778888777766655
No 294
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=20.42 E-value=1e+02 Score=24.19 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=40.8
Q ss_pred EEEeCCCCcchhhhhhccCCCHHHHHHHhcc---eEEEEeecCChHHHHHHHHcCCCCCcEEEEEecCCCceEEEE----
Q 020843 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW---- 257 (320)
Q Consensus 185 V~l~~~~~f~c~~lnRdvw~n~~V~~~l~~n---FV~~q~d~~s~eg~~~~~~Y~v~~~P~i~Iidp~tG~~v~~~---- 257 (320)
.-++.++|..|++. +++++++ |.+.-+..+.....++.........+.--+|+++ |......
T Consensus 2 ~iY~~~~C~~c~ka----------~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~-~~~~~~l~~~~ 70 (105)
T cd02977 2 TIYGNPNCSTSRKA----------LAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTR-GTPYRKLGLAD 70 (105)
T ss_pred EEEECCCCHHHHHH----------HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcC-CchHHHcCCcc
Confidence 34567889999554 6677653 5555554444444455544444445566666653 3322221
Q ss_pred ecCCChHHHHHHHHH
Q 020843 258 CGMVQPESLLEDLVP 272 (320)
Q Consensus 258 ~G~~~~~~fl~~L~~ 272 (320)
...++.+++++.|.+
T Consensus 71 ~~~ls~~e~~~~l~~ 85 (105)
T cd02977 71 KDELSDEEALELMAE 85 (105)
T ss_pred ccCCCHHHHHHHHHh
Confidence 223556666655543
Done!