Your job contains 1 sequence.
>020844
MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC
SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK
QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA
GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGTSS
NPLPPPAAAPIPGLSAADLLAYERQIAMSKMGGVHALMHPQAQHPLKQAAMGVGSAGASQ
AIYDGGFQNVAAAQQLMYYQ
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020844
(320 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 1283 8.1e-131 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 1249 3.3e-127 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 1165 2.6e-118 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 484 3.8e-46 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 470 1.2e-44 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 412 1.6e-38 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 412 1.6e-38 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 412 1.6e-38 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 412 1.6e-38 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 412 1.6e-38 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 412 1.6e-38 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 412 1.6e-38 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 412 1.6e-38 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 412 1.6e-38 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 412 1.6e-38 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 409 3.4e-38 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 408 4.3e-38 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 407 5.5e-38 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 407 5.5e-38 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 399 3.9e-37 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 385 1.2e-35 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 383 1.9e-35 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 383 1.9e-35 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 383 1.9e-35 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 383 1.9e-35 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 381 3.1e-35 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 291 5.2e-35 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 378 6.5e-35 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 378 6.5e-35 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 377 8.3e-35 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 278 3.6e-33 2
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 339 8.8e-31 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 238 1.6e-30 2
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 322 5.6e-29 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 309 1.3e-27 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 305 3.5e-27 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 303 5.7e-27 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 301 9.4e-27 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 301 9.4e-27 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 291 1.1e-25 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 290 2.1e-25 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 215 6.7e-25 2
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 286 1.5e-24 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 257 4.3e-22 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 265 5.0e-22 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 261 5.8e-22 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 265 8.1e-22 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 190 3.5e-21 2
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 242 5.2e-20 1
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 237 5.7e-20 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 234 4.1e-19 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 180 1.4e-18 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 190 2.4e-18 2
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 223 5.3e-18 1
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 214 1.6e-17 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 220 1.6e-17 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 215 1.0e-16 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 214 2.2e-16 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 151 6.1e-16 2
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 203 1.1e-14 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 203 3.2e-14 1
POMBASE|SPAC22E12.02 - symbol:SPAC22E12.02 "RNA-binding p... 181 7.2e-14 1
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 176 2.8e-13 1
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 175 3.6e-13 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 157 4.6e-13 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 152 9.5e-13 2
DICTYBASE|DDB_G0277875 - symbol:ssbA "ssRNA-binding prote... 184 1.1e-12 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 189 1.3e-12 1
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 183 1.6e-12 1
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 183 1.6e-12 1
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 183 1.6e-12 1
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 183 1.6e-12 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 168 2.3e-12 1
CGD|CAL0005693 - symbol:orf19.444 species:5476 "Candida a... 165 5.1e-12 1
UNIPROTKB|Q5A297 - symbol:CaO19.444 "Potential RNA bindin... 165 5.1e-12 1
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 185 7.2e-12 1
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 178 7.2e-12 1
ASPGD|ASPL0000013776 - symbol:AN3953 species:162425 "Emer... 181 7.7e-12 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 162 9.0e-12 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 177 1.0e-11 1
FB|FBgn0037342 - symbol:CG2931 species:7227 "Drosophila m... 176 1.7e-11 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 143 2.5e-11 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 181 2.8e-11 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 176 3.0e-11 1
UNIPROTKB|F1NDG5 - symbol:374274 "Uncharacterized protein... 158 3.2e-11 1
ZFIN|ZDB-GENE-040809-2 - symbol:rbm42 "RNA binding motif ... 177 3.5e-11 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 147 3.8e-11 2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 157 4.2e-11 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 157 4.2e-11 1
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 172 4.2e-11 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 176 4.5e-11 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 140 5.0e-11 2
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 176 5.1e-11 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 176 5.1e-11 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 176 5.1e-11 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 176 5.1e-11 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 176 5.1e-11 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 176 5.1e-11 1
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 156 5.4e-11 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 156 5.4e-11 1
WARNING: Descriptions of 764 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 250/321 (77%), Positives = 271/321 (84%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
+AILSLNGRHLFGQPIKVNWAYASGQREDTS HFNIFVGDLSPEVTDA LF CFSVYP+C
Sbjct: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AI+++TGKWLGSRQIRCNWATKGA + EDK
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDK 225
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
QSSD+KSVVELT+G SEDGK+TTN EAPENN QYTTVYVGNLAPEV+Q+DLHRHFHSLGA
Sbjct: 226 QSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGA 285
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKXXXXXXXX 240
GVIEEVRVQRDKGFGFVRYSTH EAALAIQMGNT SYL G+QMKCSWGSK
Sbjct: 286 GVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNT--HSYLSGRQMKCSWGSKPTPAGTAS 343
Query: 241 XXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHALMH-PQAQHPLKQAAMGVGSAGAS 299
DLLAYERQ+AMSKM G++ +MH PQ QH KQAAMG + G++
Sbjct: 344 NPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQAAMG--ATGSN 401
Query: 300 QAIYDGGFQNVAAAQQLMYYQ 320
QAIYDGG+QN AQQLMYYQ
Sbjct: 402 QAIYDGGYQN---AQQLMYYQ 419
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 241/320 (75%), Positives = 265/320 (82%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
+AILSLNGRHLFGQPIKVNWAYA+GQREDTS HFNIFVGDLSPEVTDATL+ FSV+ SC
Sbjct: 111 LAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++ GKWL SRQIRCNWATKGA + +DK
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDK 230
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
SSD KSVVELT GSSEDGKET N E PENN Q+TTVYVGNLAPEVTQLDLHR+FH+LGA
Sbjct: 231 LSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGA 290
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKXXXXXXXX 240
GVIEEVRVQRDKGFGFVRY+TH EAALAIQMGNT YLF +Q+KCSWG+K
Sbjct: 291 GVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT--QPYLFNRQIKCSWGNKPTPPGTAS 348
Query: 241 XXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHALMHPQAQHPLKQAAMGVGSAGASQ 300
DLL YERQ+A+SKM V+ALMH Q QHPL+QA G+ +AGA+
Sbjct: 349 NPLPPPAPAPVPGLSAADLLNYERQLALSKMASVNALMHQQGQHPLRQAH-GINAAGATA 407
Query: 301 AIYDGGFQNVAAAQQLMYYQ 320
A+YDGGFQNVAAAQQLMYYQ
Sbjct: 408 AMYDGGFQNVAAAQQLMYYQ 427
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 228/325 (70%), Positives = 259/325 (79%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
MAI++LNGRH+FGQP+KVNWAYA+GQREDTS HFNIFVGDLSPEVTDA LF FS + SC
Sbjct: 115 MAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 61 S----DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
S DARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN++ GKW+ SRQIRCNWATKGA
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATF 234
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
EDK SSD KSVVELTNGSSEDG+E +N +APENNPQ+TTVYVGNL+PEVTQLDLHR F+
Sbjct: 235 GEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFY 294
Query: 177 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKXXXX 236
+LGAGVIEEVRVQRDKGFGFVRY+TH EAALAIQMGN +LF +Q++CSWG+K
Sbjct: 295 TLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNA--QPFLFSRQIRCSWGNKPTPS 352
Query: 237 XXXXXXXXXXXXXXXXXXXXXDLLAYERQIAMSKMGGVHALMHPQAQHPLKQAAMGVGSA 296
DLLAYERQ+A++KM HPQAQH L+QA +GV A
Sbjct: 353 GTASNPLPPPAPASVPSLSAMDLLAYERQLALAKM-------HPQAQHSLRQAGLGVNVA 405
Query: 297 GASQAIYDGGFQNVAAA-QQLMYYQ 320
G + A+YDGG+QNVAAA QQLMYYQ
Sbjct: 406 GGTAAMYDGGYQNVAAAHQQLMYYQ 430
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 108/236 (45%), Positives = 140/236 (59%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASG--QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 59
A+ +LNGR + I+VNWAY S +EDTS HF+IFVGDLS EV D L FS + S
Sbjct: 148 AMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGS 207
Query: 60 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNE 118
S+ARVMWD KTGRSRG+GFV+FR + DA+ A+ + G+WLGSR IRCNWA KG +
Sbjct: 208 VSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSIS 267
Query: 119 DKQSSDAKSVVELTN-GSSE---DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 174
+Q+ A + T G G ++ + + TT YVGNL P TQ D+
Sbjct: 268 QQQAMAAMGMTPTTPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPL 327
Query: 175 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
F + G VIE R+Q D+GF F++ TH AA AI N + G+ +KCSWG
Sbjct: 328 FQNFGY-VIE-TRMQADRGFAFIKMDTHENAASAICQLNGYNVN---GRPLKCSWG 378
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 109/237 (45%), Positives = 141/237 (59%)
Query: 2 AILSLNGRHLFGQPIKVNWAY---ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ +LNGR + I+VNWAY S +EDTS HF+IFVGDLS EV D L FSV+
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFG 200
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNN 117
S S+ARVMWD KTGRSRG+GFV+FR++ DA+ A++ + G+WLGSR IRCNWA KG +
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 118 EDKQSSDAKSVVELTN-GSSEDGKETTNT-EAPENN-PQY-TTVYVGNLAPEVTQLDLHR 173
+Q+ A + T G + E N P Y TT YVGNL P T D+
Sbjct: 261 AQQQAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVP 320
Query: 174 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
F + G V+E R Q D+GF F++ +H AA AI N + G+ +KCSWG
Sbjct: 321 LFQNFGY-VVES-RFQADRGFAFIKMDSHENAAQAICGLNGYNVN---GRPLKCSWG 372
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 184 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 230
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 231 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Score = 131 (51.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 257 IVSVNGTT---IEGHVVKCYWGKE 277
Score = 111 (44.1 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 88 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 183
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 184 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 230
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 231 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Score = 131 (51.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 256
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 257 IVSVNGTT---IEGHVVKCYWGKE 277
Score = 111 (44.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 88 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QETNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 133 (51.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QETNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 133 (51.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QETNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 133 (51.9 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QETNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 133 (51.9 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 39/107 (36%), Positives = 54/107 (50%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E TN ++ N +P+N TVY G +A +T + + F G I E
Sbjct: 198 KSTQE-TNTKQLRFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IME 250
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 251 IRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 131 (51.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 80 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 139
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 140 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 199
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 200 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 246
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 247 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 279
Score = 131 (51.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 215 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 272
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 273 IVSVNGTT---IEGHVVKCYWGKE 293
Score = 102 (41.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 62 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 108
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 92/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 81 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 140
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 141 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKST 200
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 201 QENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 247
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 248 --IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Score = 131 (51.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 216 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 273
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 274 IVSVNGTT---IEGHVVKCYWGKE 294
Score = 102 (41.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
FV F +DA +A+ + G+ + ++++ NWAT + +D
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 91/215 (42%), Positives = 130/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 121
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
S+ K + S D + N +P N TVY G + +T+ + + F G
Sbjct: 182 YESNTKQL-------SYD--DVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ 228
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 229 --IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 261
Score = 124 (48.7 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P TVY G + +T+ + + F G I E+RV DKG+ FVR+++H AA A
Sbjct: 197 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHA 254
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 255 IVSVNGTT---IEGHVVKCYWGKE 275
Score = 118 (46.6 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A SA+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKD 90
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 92/215 (42%), Positives = 130/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
++ ++NGR + G+ +KVNWA + S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 63 SLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRI 122
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-------- 174
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
+ K+ E TN E N +P N TVY G + +T+ + + F G
Sbjct: 175 KPPAPKATYE-TNTKHLSFDEVVNQSSPSN----CTVYCGGVTTGLTEQLMRQTFSPFGQ 229
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I EVRV DKG+ FVR+++H AA AI N T
Sbjct: 230 --IMEVRVFPDKGYSFVRFNSHESAAHAIVSVNGT 262
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 39/107 (36%), Positives = 52/107 (48%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
K+ E TN E N +P N TVY G + +T+ + + F G I E
Sbjct: 180 KATYE-TNTKHLSFDEVVNQSSPSN----CTVYCGGVTTGLTEQLMRQTFSPFGQ--IME 232
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
VRV DKG+ FVR+++H AA AI N T L G +KC WG +
Sbjct: 233 VRVFPDKGYSFVRFNSHESAAHAIVSVNGTS---LEGHIVKCYWGKE 276
Score = 105 (42.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + F C +++ D T + + FV F + A +++ +
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 68 NGRKIMGKEVKVNWATSPSSQKKD 91
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 91/215 (42%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 82 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKI 141
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 142 SDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSV 201
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q + AK + D E N +P+N TVY G + +T+ + + F G
Sbjct: 202 QDNSAKQL-------RFD--EVVNQSSPQN----CTVYCGGIQSGLTEHLMRQTFSPFGQ 248
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ F+R+S+H AA AI N T
Sbjct: 249 --IMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGT 281
Score = 131 (51.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 55/211 (26%), Positives = 96/211 (45%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQ 86
ED S ++VG+LS +VT+ + F+ C +++ +Q + R + F Q
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQ 61
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTE 146
ND ++ + R A A N + K V T SS+ K+T+N
Sbjct: 62 HTS---ND-PYCFVEFFEHRDAAAALAAMNGRKILGKEVK-VNWATTPSSQK-KDTSN-- 113
Query: 147 APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTH 202
+ V+VG+L+PE+T D+ F G A V++++ + KG+GFV +
Sbjct: 114 -------HFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNK 166
Query: 203 AEAALAI-QMGNTTQSSYLFGKQMKCSWGSK 232
+A AI MG +L G+Q++ +W ++
Sbjct: 167 LDAENAIVHMGG----QWLGGRQIRTNWATR 193
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++PQ TVY G + +T+ + + F G I E+RV +KG+ F+R+S+H AA A
Sbjct: 217 QSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQ--IMEIRVFPEKGYSFIRFSSHESAAHA 274
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 275 IVSVNGTT---IEGHVVKCYWGKE 295
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 91/215 (42%), Positives = 130/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 121
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
S+ K + S D E + +P N TVY G + +T+ + + F G
Sbjct: 182 YESNTKQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQLMRQTFSPFGQ 228
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV DKG+ F+R+S+H AA AI N T
Sbjct: 229 --IMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGT 261
Score = 124 (48.7 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P TVY G + +T+ + + F G I E+RV DKG+ F+R+S+H AA A
Sbjct: 197 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHA 254
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 255 IVSVNGTT---IEGHVVKCYWGKE 275
Score = 117 (46.2 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKD 90
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 89/215 (41%), Positives = 131/215 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE++ + A F+ +
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GF+SF N+ DA+SAI + G+WLG RQIR NWAT+ + K
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKP--SAPK 181
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
+++ S L+ +E N +P N TVY G +A ++ + + F G
Sbjct: 182 SNNEGASSKHLSY------EEVLNQSSPSN----CTVYCGGIASGLSDQLMRQTFSPFGQ 231
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+ +H AA AI N T
Sbjct: 232 --IMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGT 264
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 87/205 (42%), Positives = 123/205 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 121
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 122 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 181
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
S+ K + S D E N +P N TVY G + +T+ + + F G
Sbjct: 182 YESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ 228
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEA 205
I E+RV DKG+ FVR T + A
Sbjct: 229 --IMEIRVFPDKGYSFVR-QTQSSA 250
Score = 123 (48.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 107 CNWATKGAGNN-----EDKQSSDAKSVVELTNGSSEDGKE------TTNTEAPENNPQYT 155
C AGN+ E + A + + NG GKE TT + ++ +
Sbjct: 36 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ- 210
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AIQ
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 211 MGNTTQSSYLFGKQMKCSWGSK 232
MG +L G+Q++ +W ++
Sbjct: 156 MGG----QWLGGRQIRTNWATR 173
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKD 90
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E N +P N TVY G + +T+
Sbjct: 182 ATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQ 228
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 229 LMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E N +P N TVY G + +T+
Sbjct: 182 ATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQ 228
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 229 LMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E N +P N TVY G + +T+
Sbjct: 182 ATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQ 228
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 229 LMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 141 (54.7 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E N +P N TVY G + +T+
Sbjct: 182 ATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQ 228
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 229 LMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGT 272
Score = 141 (54.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 37/107 (34%), Positives = 52/107 (48%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
KS E +N E N +P N TVY G + +T+ + + F G I E
Sbjct: 190 KSTYE-SNTKQLSYDEVVNQSSPSN----CTVYCGGVTSGLTEQLMRQTFSPFGQ--IME 242
Query: 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 243 IRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E + +P N TVY G + +T+
Sbjct: 182 ATRKPPAPKSTYESNTKQL-------SYD--EVVSQSSPNN----CTVYCGGVTSGLTEQ 228
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ FVR+S+H AA AI N T
Sbjct: 229 LMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGT 272
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
Score = 127 (49.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P TVY G + +T+ + + F G I E+RV DKG+ FVR+S+H AA A
Sbjct: 208 QSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHA 265
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 266 IVSVNGTT---IEGHVVKCYWGKE 286
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 291 (107.5 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 61/116 (52%), Positives = 75/116 (64%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYAS----GQREDTSGH-FNIFVGDLSPEVTDATLFACFS 55
MA+ +LNGR + IKVNWA+ S G +T FNIFVGDLSPEV D L FS
Sbjct: 135 MALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFS 194
Query: 56 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111
+ S A VMWD +T RSRG+GFV+F NQ DA+ A+ + G+WL R IRCNWA+
Sbjct: 195 KFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWAS 250
Score = 125 (49.1 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 144 NTEAPENNPQYTTVYVGNLAPEVTQLDLHR---HFHSLG-AGVIEEVRVQRDKGFGFVRY 199
NTE P N ++VG+L+PEV L F SL A V+ +++ R +G+GFV +
Sbjct: 167 NTEEPLFN-----IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTF 221
Query: 200 STHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231
++A LA+Q T +L G+ ++C+W S
Sbjct: 222 GNQSDAELALQ---TMNGEWLCGRAIRCNWAS 250
Score = 114 (45.2 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGN 213
TTVY+GN+A Q +L + G I + + ++G FV+Y TH AALAI Q+
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFG--FIVDFKFHPERGCAFVKYDTHERAALAIIQLAG 469
Query: 214 TTQSSYLFGKQMKCSWGSK 232
L G+ +KC WG +
Sbjct: 470 FN----LNGRPLKCGWGKE 484
Score = 88 (36.0 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 17 KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRG 76
+VN A A + S ++VG+L ++ T+ FSV + + + K
Sbjct: 63 QVNAASAKEGGREVSNKI-LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFN 121
Query: 77 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114
+ F+ + + A A+N L G+ + +I+ NWA + A
Sbjct: 122 YAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSA 159
Score = 62 (26.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFN 35
+A+ ++NG L G+ I+ NWA S +++ H+N
Sbjct: 229 LALQTMNGEWLCGRAIRCNWA--SHKQQQQQQHYN 261
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 91/226 (40%), Positives = 130/226 (57%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 58 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 117
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 118 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169
AT+ + S+ K + S D E + +P N TVY G + +T+
Sbjct: 178 ATRKPPAPKSTYESNTKQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQ 224
Query: 170 DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
+ + F G I E+RV DKG+ F+R+S+H AA AI N T
Sbjct: 225 LMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGT 268
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 114
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 115 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 164
Score = 124 (48.7 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P TVY G + +T+ + + F G I E+RV DKG+ F+R+S+H AA A
Sbjct: 204 QSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFIRFSSHESAAHA 261
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 262 IVSVNGTT---IEGHVVKCYWGKE 282
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 89/239 (37%), Positives = 130/239 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQ--REDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 59
A+ ++N R + IKVNWA + G + D S H +IFVGDLSPE+ TL F+ +
Sbjct: 61 ALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGE 120
Query: 60 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
S+ R++ D T +S+G+ FVSF + +A++AI + G+W+GSR IR NW+T+ +
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPRE 180
Query: 120 KQSSDAKSVVE---LTNGSSEDGKETTNTEAPEN--NPQYTTVYVGNLAPEVTQLDL-HR 173
+ NGS G + E N +P TTVY G P V DL H+
Sbjct: 181 PSKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHK 240
Query: 174 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
HF G I++VRV +DKGF F+++ T AA AI+ T +S + G +KC WG +
Sbjct: 241 HFVQFGP--IQDVRVFKDKGFSFIKFVTKEAAAHAIEH---THNSEVHGNLVKCFWGKE 294
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 85/205 (41%), Positives = 123/205 (60%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 58 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 117
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ +
Sbjct: 118 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 177
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
S+ K + S D E + +P N TVY G + +T+ + + F G
Sbjct: 178 YESNTKQL-------SYD--EVVSQSSPGN----CTVYCGGVTSGLTEQLMRQTFSPFGQ 224
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEA 205
I E+RV DKG+ F+R T + A
Sbjct: 225 --IMEIRVFPDKGYSFIR-QTQSSA 246
Score = 123 (48.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 107 CNWATKGAGNN-----EDKQSSDAKSVVELTNGSSEDGKE------TTNTEAPENNPQYT 155
C AGN+ E + A + + NG GKE TT + ++ +
Sbjct: 32 CKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF 91
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ- 210
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AIQ
Sbjct: 92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 151
Query: 211 MGNTTQSSYLFGKQMKCSWGSK 232
MG +L G+Q++ +W ++
Sbjct: 152 MGG----QWLGGRQIRTNWATR 169
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 23/84 (27%), Positives = 47/84 (55%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 96 TGKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKD 86
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 278 (102.9 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
+A+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY 188
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA K NN +
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 247
Score = 109 (43.4 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G RE TS ++VG+L +T+ L F V ++ ++M D K ++ + FV +
Sbjct: 67 TGGRE-TSDRV-LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYH 123
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
DA A+ L GK + + ++ NWA + ++ D
Sbjct: 124 QSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSD 159
Score = 106 (42.4 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 211
P+ TT Y+GN+ T+ DL F + G I + + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCI-- 393
Query: 212 GNTTQSSYLF-GKQMKCSWGSK 232
+++ F G+ ++ WG +
Sbjct: 394 --VALANFPFQGRNLRTGWGKE 413
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 85/244 (34%), Positives = 132/244 (54%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYAS---GQ---REDTSGHFNIFVGDLSPEVTDATLFACF 54
+A+ S NGR L + + V WA+ G+ + +TS HF++FVGDL E+ L F
Sbjct: 93 LALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAF 152
Query: 55 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-- 112
+ S+A+++ D T + +G+GFVS+ ++DA+ AI+++ G WLG R IR NWAT+
Sbjct: 153 VKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKP 212
Query: 113 ---G--AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVT 167
G G+ D++ N S + E N A +N T+VYVGN+A +
Sbjct: 213 DEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADN----TSVYVGNIA-NLG 267
Query: 168 QLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMK 226
+ ++ R F G I EVR + +G+ FV++ T AA AI QM N + G+ ++
Sbjct: 268 EDEIRRAFDRFGP--INEVRTFKIQGYAFVKFETKESAARAIVQMNNAD----IGGQIVR 321
Query: 227 CSWG 230
CSWG
Sbjct: 322 CSWG 325
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 238 (88.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 45/95 (47%), Positives = 68/95 (71%)
Query: 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86
R DTS HF++FVGDLS +V++ L + F+ + S+A+V+ D +T +S+G+GFVSF N+Q
Sbjct: 218 RIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQ 277
Query: 87 DAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDK 120
+A++AI + GKW+G R +R NWA K + N DK
Sbjct: 278 NAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDK 312
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FN--------IFVGDLSPEVTDA 48
AI +NG+ + + ++ NWA E+ FN ++VG++S + TDA
Sbjct: 282 AIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDA 341
Query: 49 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108
L FS Y ++ R+ KT R + FV + ++ A AI ++ GK + Q+RC+
Sbjct: 342 DLRDLFSTYGDIAEVRIF---KTQR---YAFVRYEKKECATKAIMEMNGKEMAGNQVRCS 395
Query: 109 WATKGAGNNE 118
W A N+
Sbjct: 396 WGRTQAVPNQ 405
Score = 125 (49.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 33/98 (33%), Positives = 52/98 (53%)
Query: 135 SSEDGKETTNTEAPENNPQY--TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK 192
+SE+ ++ E N+ + T+VYVGN++ + T DL F + G I EVR+ + +
Sbjct: 305 NSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGD--IAEVRIFKTQ 362
Query: 193 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
+ FVRY A AI N + + G Q++CSWG
Sbjct: 363 RYAFVRYEKKECATKAIMEMNGKEMA---GNQVRCSWG 397
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 80/221 (36%), Positives = 126/221 (57%)
Query: 14 QPIKVNWA-YASGQ-REDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQK 70
QP ++NWA +++G+ R +T F+IFVGDL+ +VTD L F S YPS A+V+ D
Sbjct: 155 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 214
Query: 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 130
TG S+G+GFV F ++ + A+ ++ G + SR +R AT + ++ SS A V
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQA---VI 271
Query: 131 LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190
L+ G + +G T +++ + + TT++VG L EVT +L + F+ G V V++
Sbjct: 272 LSGGYASNGAATHGSQS-DGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVV--SVKIPA 328
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 230
KG GFV++S + A AIQ S + GKQ ++ SWG
Sbjct: 329 GKGCGFVQFSDRSSAQEAIQK----LSGAIIGKQAVRLSWG 365
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 34/109 (31%), Positives = 52/109 (47%)
Query: 19 NWAYASGQRED-TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 77
N A G + D S + IFVG L EVTD L F+ + ++ G+ G
Sbjct: 279 NGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI----PAGK--GC 332
Query: 78 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 126
GFV F ++ AQ AI L+G +G + +R +W A N + + S ++
Sbjct: 333 GFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA-NKQMRTDSGSQ 380
Score = 113 (44.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
I++GDL + ++ L +CFS +++ +++TG+S +GFV F A+ +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 96 TGKWLGSRQ--IRCNWATKGAGNNEDKQSSD 124
G + + + R NWA G + SD
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETGSD 176
Score = 42 (19.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 263 ERQIAMSKMGGVHA---LMHPQAQHPLKQAAMGVGSAGASQAIYDGGFQNVAAA 313
ER AM++M GV+ M P K +A S+ A I GG+ + AA
Sbjct: 231 ERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQA--VILSGGYASNGAA 282
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 77/223 (34%), Positives = 122/223 (54%)
Query: 14 QPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQ 69
QP ++NWA +++G++ + ++FVGDLSP+VTD L FS YPS A+V+ D
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 238
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSV 128
TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT K A N+ + SS A
Sbjct: 239 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQA--- 295
Query: 129 VELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188
V L G +G +++ + T++VG + P+V DL + F G V V++
Sbjct: 296 VILAGGHGSNGSMGYGSQS-DGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVV--SVKI 352
Query: 189 QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 230
KG GFV+++ A AI+ N T + GK ++ SWG
Sbjct: 353 PVGKGCGFVQFADRKSAEDAIESLNGT----VIGKNTVRLSWG 391
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 70/181 (38%), Positives = 106/181 (58%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N R L + +KVNWA GQ++ DT+ HF++FVGDLS EV + L F +
Sbjct: 100 ALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFG 159
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
SDA+V+ D T +S+G+GFVS+ +++A+ AI + G+WLG R IR NWAT+ G+ E
Sbjct: 160 DVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQE 219
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
+ KS E+ N +S D T+VYVGN+A +T+ ++ + F S
Sbjct: 220 KPSHYNEKSYDEIYNQTSGDN---------------TSVYVGNIA-SLTEDEIRQGFASF 263
Query: 179 G 179
G
Sbjct: 264 G 264
Score = 116 (45.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGN 213
T+VYVGN+A +T+ ++ + F S G I EVR+ + +G+ FV++ AA AI QM N
Sbjct: 241 TSVYVGNIA-SLTEDEIRQGFASFGR--ITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNN 297
Query: 214 TTQSSYLFGKQMKCSWG 230
G+ ++CSWG
Sbjct: 298 QDVG----GQLVRCSWG 310
Score = 96 (38.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 212
V+VG+L+ EV L F G A VI + + KG+GFV Y EA AI+
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 213 NTTQSSYLFGKQMKCSWGSK 232
N +L + ++ +W ++
Sbjct: 197 N---GQWLGRRTIRTNWATR 213
Score = 92 (37.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+L VT+ + F+ S + +V++D G + + FV F + A A+ +
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTM 104
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDK 120
+ L R+++ NWA + G + K
Sbjct: 105 NKRLLLDREMKVNWAVE-PGQQQSK 128
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 56/108 (51%), Positives = 80/108 (74%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 25 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 84
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108
SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR N
Sbjct: 85 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 132
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 124 DAKSVVELTNGSSEDGKE------TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 177
DA + + NG GKE TT + ++ + V+VG+L+PE+T D+ F
Sbjct: 21 DAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP 80
Query: 178 LG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMK 226
G A V++++ + KG+GFV + +A AI MG +L G+Q++
Sbjct: 81 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG----QWLGGRQIR 130
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 60/123 (48%), Positives = 84/123 (68%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDAT 49
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+ A F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 110 ATK 112
AT+
Sbjct: 182 ATR 184
Score = 143 (55.4 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 47/179 (26%), Positives = 89/179 (49%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS +VV S++ ++ + + +P+ T
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSS---TVV-----STQRSQDHFHVFVGDLSPEIT 118
Query: 156 TVYV-GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ-MG 212
T + AP D A V++++ + KG+GFV + +A AIQ MG
Sbjct: 119 TEDIKAAFAPFGRISD---------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 168
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 91/308 (29%), Positives = 142/308 (46%)
Query: 7 NGRHLFGQPI--KVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSD 62
NG + G + ++NWA + SGQ+ D +IFVGDL+P+VTD L F V Y S
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 63 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS 122
A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R + AT N +Q
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK-NVGVQQQ 204
Query: 123 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 182
K+V +T S+ PE++ TT+ V NL VT+ +L + F LG +
Sbjct: 205 YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVI 264
Query: 183 IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKXXXXXXXXX 241
V++ KG+G+V++ T A A+Q + G+Q ++ SW
Sbjct: 265 Y--VKIPATKGYGYVQFKTRPSAEEAVQR----MQGQVIGQQAVRISWSKNPGQDGWVTQ 318
Query: 242 XXXXXXXXXXXXXXXXDLLAY--ERQIAMSKMGGVHALMHPQ---AQHPLKQAAMGVGSA 296
D AY + ++ GG +PQ + +A G G A
Sbjct: 319 ADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAG-GVA 377
Query: 297 GASQAIYD 304
GA Q +YD
Sbjct: 378 GAEQELYD 385
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 82/240 (34%), Positives = 122/240 (50%)
Query: 4 LSLNGRHL--FGQPIKVNWAYASG----QREDTSGHFNIFVGDLSPEVTDATLFACF-SV 56
LSLNG + + K+NWA G R+D ++IFVGDL PEV + L + F S
Sbjct: 124 LSLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSR 183
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT---KG 113
+PSC A++M D +G SRG+GFV F ++ D Q A++++ G + G+R +R + AT KG
Sbjct: 184 FPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKG 243
Query: 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPEN---NPQYTTVYVGNLAPEVTQLD 170
G + + G+ G P N +P TTV+VG L+ VT+ +
Sbjct: 244 PGVVPGGMGMPGPAGMYPPMGAPPMG--FYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDE 301
Query: 171 LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
L F G G I V++ KG GFV++ A +AI N Q + +++ SWG
Sbjct: 302 LRSFFQ--GFGEITYVKIPPGKGCGFVQFVQRHAAEMAI---NQMQGYPIGNSRVRLSWG 356
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 290 (107.1 bits), Expect = 2.1e-25, P = 2.1e-25
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 14 QPIKVNWA-YASGQ-REDTSG-HFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQ 69
QP ++NWA +++G+ R +G +IFVGDL+P+V+DA L F+ YPS A+V+ D
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDS 249
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSV 128
TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT K A + S A
Sbjct: 250 NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQA--- 306
Query: 129 VELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188
+ L G +G + ++ NN +T++VG L +VT+ DL + F G V V++
Sbjct: 307 LTLAGGHGGNG---SMSDGESNN---STIFVGGLDADVTEEDLMQPFSDFGEVV--SVKI 358
Query: 189 QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWG 230
KG GFV+++ A AI GN + + GK ++ SWG
Sbjct: 359 PVGKGCGFVQFANRQSAEEAI--GNLNGT--VIGKNTVRLSWG 397
Score = 115 (45.5 bits), Expect = 0.00058, P = 0.00058
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VGDL + + L CFS S +V+ +++T +S G+GFV F ++ A+ A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 96 TGKWLGSRQ--IRCNWATKGAGNNEDKQSSDAKSV 128
+G + + + R NWA+ G ++ S+
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSI 215
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 215 (80.7 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 48/114 (42%), Positives = 69/114 (60%)
Query: 4 LSLNGRHL-FGQPI-KVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDATLFACFSV-Y 57
L LNG + Q + K+NWA G R D G ++IFVGDL PEV + L + F +
Sbjct: 105 LGLNGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQARF 164
Query: 58 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111
PSC A++M D TG+SRG+GFV F ++ D Q A+ ++ G + G+R +R + AT
Sbjct: 165 PSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTAT 218
Score = 103 (41.3 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 210
+P TTV+VG L+ VT+ +L F G G I V++ KG GFV++ H AA +
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQ--GFGDITYVKIPPGKGCGFVQF-VHRHAA---E 333
Query: 211 MGNTTQSSYLFGK-QMKCSWG 230
M Y G +++ SWG
Sbjct: 334 MAINQMQGYPIGNSRVRLSWG 354
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 286 (105.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 74/199 (37%), Positives = 109/199 (54%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F+IFVGDLS E+ L F+ + SD RV+ D +T +S+G+GFVSF + +A++AI
Sbjct: 96 FHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAIT 155
Query: 94 DLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
+ G+WLGSR IR NWAT+ K +AK + + D E N +P N
Sbjct: 156 AMNGQWLGSRSIRTNWATRKPPAT--KADMNAKPL-------TFD--EVYNQSSPTNCTV 204
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213
Y G L+ + + L + F G I+E+RV +DKG+ FVR+ST A AI N
Sbjct: 205 YCGGINGALSGFLNEEILQKTFSPYGT--IQEIRVFKDKGYAFVRFSTKEAATHAIVAVN 262
Query: 214 TTQSSYLFGKQMKCSWGSK 232
T+ + + +KC+WG +
Sbjct: 263 NTEINQ---QPVKCAWGKE 278
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 64/154 (41%), Positives = 88/154 (57%)
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
DARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q
Sbjct: 2 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ 61
Query: 122 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 181
++ K + ED N +P+N TVY G +A +T + + F G
Sbjct: 62 ENNTKQL------RFED---VVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ- 107
Query: 182 VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215
I E+RV +KG+ FVR+STH AA AI N T
Sbjct: 108 -IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 140
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++P+ TVY G +A +T + + F G I E+RV +KG+ FVR+STH AA A
Sbjct: 76 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHA 133
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
I N T + G +KC WG +
Sbjct: 134 IVSVNGTT---IEGHVVKCYWGKE 154
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 74/236 (31%), Positives = 120/236 (50%)
Query: 2 AILSLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF- 54
A++ N + G K+NWA G + + F+IFVGDL P D+ LF F
Sbjct: 144 ALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFR 203
Query: 55 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114
S+YPSC+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+
Sbjct: 204 SIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP-- 261
Query: 115 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRH 174
+ + S A S + + S+ + + N + +P TTV+VG LA +++ DL
Sbjct: 262 ---KSRASIAADSALGIVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVC 316
Query: 175 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
F G I +++ KG GFV+YS + A AI NT Q + + ++ +WG
Sbjct: 317 FQPFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWG 367
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 261 (96.9 bits), Expect = 5.8e-22, P = 5.8e-22
Identities = 76/235 (32%), Positives = 120/235 (51%)
Query: 4 LSLNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-SVY 57
+S+N + + G K+NWA G RE + + ++IFVGDLSP V + +++ F S Y
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 58 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 117
SC A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP----- 265
Query: 118 EDKQSSDAKSVVELTNGSSED-GKETTNTEAPE-NNPQYTTVYVGNLAPEVTQLDLHRHF 175
K + S V + S G + P+ + +TV+VG L+ V++ +L F
Sbjct: 266 --KSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLF 323
Query: 176 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
+ G I V++ KG GFV++ A +AI N Q L +++ SWG
Sbjct: 324 QNFGE--IVYVKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLSWG 373
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 265 (98.3 bits), Expect = 8.1e-22, P = 8.1e-22
Identities = 68/176 (38%), Positives = 98/176 (55%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F+IFVGDLS E+ L F+ + SD RV+ D +T +S+G+GFVSF + +A+SAI
Sbjct: 461 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 520
Query: 94 DLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
+ G+WLGSR IR NWAT+ K + +++ LT E N +P N
Sbjct: 521 AMNGQWLGSRSIRTNWATR-------KPPASKENIKPLTFD------EVYNQSSPSNCTV 567
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
Y V + +++ L + F GA I+E+RV +DKG+ FVR+ST A AI
Sbjct: 568 YVGG-VNSALTALSEEVLQKTFAPYGA--IQEIRVFKDKGYAFVRFSTKEAATHAI 620
Score = 134 (52.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 135 SSEDGKETTNTEA-PENNPQYTTVYVGNLAPEVTQLD---LHRHFHSLGAGVIEEVRVQR 190
S E+ K T E +++P TVYVG + +T L L + F GA I+E+RV +
Sbjct: 544 SKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGA--IQEIRVFK 601
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
DKG+ FVR+ST A AI + T+ + + +KCSWG +
Sbjct: 602 DKGYAFVRFSTKEAATHAIVGVHNTEIN---AQPVKCSWGKE 640
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 190 (71.9 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 48/135 (35%), Positives = 75/135 (55%)
Query: 14 QPIKVNWAY-ASGQREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQK 70
Q ++NWA +G+R G +FVGDL+P+VTD L F +VY S A+V+ D+
Sbjct: 151 QAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRT 210
Query: 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 130
TGRS+G+GFV F ++ + A+ ++ G++ SR +R T A N + A +
Sbjct: 211 TGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR----TGPAANKKPLTMQPAS--YQ 264
Query: 131 LTNGSSEDGKETTNT 145
T G+S + + TNT
Sbjct: 265 NTQGNSGES-DPTNT 278
Score = 131 (51.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 13 GQPIKVNWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 71
GQP + + Q ++G ++++GDL P + + L F + + A+V+ +++
Sbjct: 58 GQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQN 117
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ--IRCNWATKGAGNNEDKQSSD 124
G S G+GF+ F N A+ + G + S + R NWA GAG + +
Sbjct: 118 GYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPE 172
Score = 115 (45.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 141 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 200
+ T + E++P TT++VG + VT+ DL F G V V++ K GFV+Y+
Sbjct: 264 QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELV--HVKIPAGKRCGFVQYA 321
Query: 201 THAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
A A A+ + N TQ L G+ ++ SWG
Sbjct: 322 NRACAEQALSVLNGTQ---LGGQSIRLSWG 348
Score = 98 (39.6 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 141 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFG 195
E E PE+ TV+VG+LAP+VT L F ++ GA V+ + R KG+G
Sbjct: 164 ERRQAEGPEH-----TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYG 218
Query: 196 FVRYSTHAEAALAI 209
FVR++ +E A+
Sbjct: 219 FVRFADESEQIRAM 232
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 242 (90.2 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 71/199 (35%), Positives = 104/199 (52%)
Query: 14 QPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQ 69
QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS YPS A+V+ D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G SR +R AT N +Q
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG------ 287
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+ NG T T PE + TT++VG L VT DL + F+ G V ++ V
Sbjct: 288 YMPNG--------TLTR-PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG 338
Query: 190 RDKGF-GFVRYSTHAEAAL 207
+ GF FV +AE AL
Sbjct: 339 KGCGFVQFVN-RPNAEEAL 356
Score = 93 (37.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 142 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGF 196
+T + ENN +++VG+L+P+V+ LH F A V+ + R KG+GF
Sbjct: 184 STGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGF 243
Query: 197 VRYSTHAEAALAIQMGNTTQSS 218
VR+ E A+ N + S
Sbjct: 244 VRFGDENERTKAMTEMNGVKCS 265
Score = 84 (34.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
I+VGDL + +A L + F+ +V+ ++ G S G+GFV F + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 94 DLTGKWLGS--RQIRCNWATKGAG 115
+ G + + + R NWA+ G
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTG 186
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ +
Sbjct: 54 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 113
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQ 85
SDARV+ D TG+S+G+GFVSF N+
Sbjct: 114 SDARVVKDMATGKSKGYGFVSFFNK 138
Score = 115 (45.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 37 FVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 96
+VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 97 GKWLGSRQIRCNWATKGAGNNED 119
G+ + ++++ NWAT + +D
Sbjct: 60 GRKIMGKEVKVNWATTPSSQKKD 82
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 234 (87.4 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 69/199 (34%), Positives = 104/199 (52%)
Query: 14 QPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQ 69
QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS YPS A+V+ D
Sbjct: 176 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA 235
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G SR +R AT N +Q
Sbjct: 236 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG------ 289
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+ +G+ T +E N TT++VG L VT DL + F G V ++ V
Sbjct: 290 YMPSGAF------TRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG 340
Query: 190 RDKGF-GFVRYSTHAEAAL 207
+ GF FV +AE AL
Sbjct: 341 KGCGFVQFVN-RPNAEEAL 358
Score = 98 (39.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/82 (31%), Positives = 40/82 (48%)
Query: 142 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGF 196
+T + ENN +++VG+LAP+V+ LH F A V+ + R KG+GF
Sbjct: 186 STGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGF 245
Query: 197 VRYSTHAEAALAIQMGNTTQSS 218
VR+ E A+ N + S
Sbjct: 246 VRFGDENERTKAMTEMNGVKCS 267
Score = 84 (34.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
I+VGDL + +A L + F+ +V+ ++ G S G+GFV F + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 94 DLTGKWLGS--RQIRCNWATKGAG 115
+ G + + + R NWA+ G
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTG 188
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 180 (68.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 12 FGQPIKVNWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWD 68
F + ++NWA + + ++ F++FVGDLSP T+A L + F + S RVM D
Sbjct: 168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTD 227
Query: 69 QKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111
TG SR FGFV F ++ + + A+ +++GKW R +R +AT
Sbjct: 228 PLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYAT 270
Score = 111 (44.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 144 NTEAPEN----NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY 199
N P N +P TTV+VG L P+ T+ L F G I VR+ K GFV++
Sbjct: 345 NDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGP--ILNVRIPNGKNCGFVKF 402
Query: 200 STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
+A +IQ G Q + G ++ SWG
Sbjct: 403 EKRIDAEASIQ-G--LQGFIVGGSPIRLSWG 430
Score = 40 (19.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 117 NEDKQSSDAKSV-VELTNGSSEDGKETTNTEAPENN 151
N Q +A S+ ++L NG+S + NT P N
Sbjct: 569 NNLPQFGNAMSISMQLPNGNSNKTASSMNTN-PNTN 603
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 190 (71.9 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 16 IKVNWAYASGQREDTS-------GHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMW 67
+K+NWA +S + S + +IFVGDL+P VT++ LF F + Y S S A+++
Sbjct: 138 LKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVH 197
Query: 68 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG-----AGNNEDKQS 122
DQ TG S+G+GFV F N + Q A++++ G +L R I+ T G +GNN+ +S
Sbjct: 198 DQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG-PTSGQQQHVSGNNDYNRS 256
Query: 123 SDA 125
S +
Sbjct: 257 SSS 259
Score = 92 (37.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH--AEAALA 208
+P TTV++G L+ VT+ +L +F G I V++ K GFV+Y AEAA+A
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGT--IVYVKIPVGKCCGFVQYVDRLSAEAAIA 366
Query: 209 IQMGNTTQSSYLFGKQMKCSWG 230
G +S +++ SWG
Sbjct: 367 GMQGFPIANS-----RVRLSWG 383
Score = 67 (28.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 27/110 (24%), Positives = 52/110 (47%)
Query: 23 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQ--KTG-RS---- 74
AS T+G+ +++GDL P T+ ++ + + R+MW+ G RS
Sbjct: 44 ASNVSLGTTGN-QLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP 102
Query: 75 ---RGFGFVSFRNQQDAQSAI--NDLTGKWLGSRQIRCNWATKGAGNNED 119
+G+ FV F + A +A+ N + +++++ NWAT N+ +
Sbjct: 103 KNNQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNN 152
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 223 (83.6 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 70/210 (33%), Positives = 100/210 (47%)
Query: 14 QPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKT 71
Q ++NWA +SG + D S + IFVGDL+ +VTD L F YPS A+V+ D+ T
Sbjct: 134 QLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVT 193
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT--KGAGNNEDKQSSDAKSVV 129
GR++G+GFV F ++ + A+ ++ G +R +R A KG D S A V
Sbjct: 194 GRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGV- 252
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
TT +N+P TTV+VG L VT L F G V ++
Sbjct: 253 ------------TT-----DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG 295
Query: 190 RDKGFGFVRYSTHAEAAL----AIQMGNTT 215
+ GF + AE AL +Q+G TT
Sbjct: 296 KRCGFVQFSEKSCAEEALRMLNGVQLGGTT 325
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 57/149 (38%), Positives = 83/149 (55%)
Query: 62 DARVMWDQKTGRSRGFGFVSF-RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
DARV+ D TG+S+G+G VSF N+ DA++AI + G+WLG RQI+ +WAT+ +
Sbjct: 2 DARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKST 61
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
Q ++ K + ED N + +N TVY G +A +T + + F G
Sbjct: 62 QENNTKQL------KFED---VVNQSSSKN----CTVYCGGIASGLTDQLMRQTFSPFGQ 108
Query: 181 GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
I E+RV +K + FVR+STH AA AI
Sbjct: 109 --IMEIRVFPEKRYSFVRFSTHGSAAHAI 135
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++ + TVY G +A +T + + F G I E+RV +K + FVR+STH AA A
Sbjct: 77 QSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKRYSFVRFSTHGSAAHA 134
Query: 209 I-QMGNTTQSSYLFGKQMKCSWGSK 232
I + TT + G+ +KC WG +
Sbjct: 135 IVSVTGTT----IEGRVVKCYWGKE 155
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 220 (82.5 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 60/208 (28%), Positives = 109/208 (52%)
Query: 29 DTSGHFNIFVGDLSPEVTDATLFACFSV-YPS-CSDARVMWDQKTGRSRGFGFVSFRNQQ 86
++S ++IF+GDL+PEV+DA L+ F++ YP+ A+V+ D T +S+GFGFV F +
Sbjct: 174 NSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGFVKFHSPD 233
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSE--DGKETTN 144
A+ ++ G +GS+ IR A AG++ D + K V +L + + N
Sbjct: 234 IMNRALKEMQGYNIGSKAIRVGLA---AGSHVD---TSFKPVTKLDHHRVPVPQSQPALN 287
Query: 145 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAE 204
NN +T +G L+ +T+ +L +HF +G G + RV +D G++++ + +
Sbjct: 288 QFTDPNNTSFT---IGGLSGRITESELEQHF--IGFGDLVYCRVSKDYQTGYIKFYSRSA 342
Query: 205 AALAIQMGNTTQSSYLFGK-QMKCSWGS 231
A A ++ +++ +WGS
Sbjct: 343 AESAF----LNMYGFMINDCRLQITWGS 366
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 215 (80.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 64/203 (31%), Positives = 104/203 (51%)
Query: 14 QPIKVNWAYA-SGQRE-DTSG-HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQ 69
Q ++NWA A +G++ T G IFVGDL+PEVTD L F +VY S A+V+ D+
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G++ +R +R G N++ ++
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI-----GPAANKNALPMQP-AMY 244
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+ T G++ A +N+P TT++VG L VT +L F G + ++
Sbjct: 245 QNTQGAN----------AGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG 294
Query: 190 RDKGFGFVRYSTHAEAALAIQMG 212
+ GF AE AL++ G
Sbjct: 295 KRCGFVQYANKASAEHALSVLNG 317
Score = 120 (47.3 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 140 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRY 199
+ T A +N+P TT++VG L VT +L F G + V++ K GFV+Y
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGE--LLHVKIPPGKRCGFVQY 302
Query: 200 STHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230
+ A A A+ + N TQ L G+ ++ SWG
Sbjct: 303 ANKASAEHALSVLNGTQ---LGGQSIRLSWG 330
Score = 109 (43.4 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL + + + + F+ + A+V+ ++ TG+S G+GF+ F + A+ +
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 95 LTGKWLGSRQ--IRCNWATKGAG 115
G + S + R NWA GAG
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAG 143
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 214 (80.4 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 63/197 (31%), Positives = 97/197 (49%)
Query: 14 QPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKT 71
Q ++NWA +G+R D S IFVGDL+ +VTD L F SVY S A+V+ D+ T
Sbjct: 155 QNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRIT 214
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVEL 131
GRS+G+GFV F ++ + A+ ++ G +R +R G N+ + K+ +
Sbjct: 215 GRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRI-----GPAANKKPVGTPQKATYQ- 268
Query: 132 TNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191
N + G E++P TT++VG L P V + L + F G V ++ +
Sbjct: 269 -NPQATQG---------ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKR 318
Query: 192 KGFGFVRYSTHAEAALA 208
GF AE AL+
Sbjct: 319 CGFVQFGTRASAEQALS 335
Score = 125 (49.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL + + L CF A+V+ +++TG+S G+GF+ FR+ A++ +
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 95 LTGKWLGS--RQIRCNWATKGAGNNEDKQSSDAKSVVEL 131
G + + + R NWA+ GAG D + V +L
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDL 183
Score = 116 (45.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
E++P TT++VG L P V + L + F G V V++ K GFV++ T A A A
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV--HVKIVAGKRCGFVQFGTRASAEQA 333
Query: 209 IQMGNTTQSSYLFGKQMKCSWG 230
+ N TQ L G+ ++ SWG
Sbjct: 334 LSSLNGTQ---LGGQSIRLSWG 352
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 151 (58.2 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 36/99 (36%), Positives = 53/99 (53%)
Query: 17 KVNWAYASGQREDT--SGHFNIFVGDLSPEVTDATLFACFSV-YP-SCSDARVMWDQKTG 72
++NWA + + +++FVGDLS T+A L A F +P S RVM D +G
Sbjct: 235 RLNWASGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISG 294
Query: 73 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111
+SR FGFV F + + Q A+ ++ G W R +R AT
Sbjct: 295 KSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALAT 333
Score = 123 (48.4 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 210
+P TTV+VG L+ +V++ LH F G +I++V++ K GFV+YS EA AI
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFG--LIQQVKIPPGKNCGFVKYSNREEAEEAIA 574
Query: 211 MGNTTQSSYLFGKQMKCSWG 230
Q + G +++ SWG
Sbjct: 575 ---AMQGFVIGGNRVRLSWG 591
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 2 AILSLNGRHLFGQPIKV 18
A++ +NG G+P++V
Sbjct: 313 ALIEMNGAWFAGRPLRV 329
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 203 (76.5 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/155 (32%), Positives = 86/155 (55%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-C 60
AI LN L G+PI+VN A + D N+F+G+L P+V + L+ FS +
Sbjct: 82 AIKVLNMIKLHGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
S+ ++M D TG SRGFGF+S+ + + + +AI +TG++L +RQI ++A K E +
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGE-R 198
Query: 121 QSSDAKSVVELTNGSSEDGKETT--NTEAPENNPQ 153
+ A+ ++ TN +++ + T P + PQ
Sbjct: 199 HGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQ 233
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 203 (76.5 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 65/216 (30%), Positives = 105/216 (48%)
Query: 21 AYASGQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 79
A AS + + G N+FVG+LS VT+ L F + S AR+M ++ TGRSRGFG+
Sbjct: 263 AAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGY 321
Query: 80 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG 139
V F N DA A + + R+I ++AT G N+D+ G E
Sbjct: 322 VEFTNAADAAKAYEAMKEHEIDGRKINLDYAT-GRPANKDQ------------GGFKERA 368
Query: 140 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF----HSLGAGVIEEVRVQRDKGFG 195
+ + + +P+ T++VGNL + +H F + LG + ++ R KGFG
Sbjct: 369 QNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFG 428
Query: 196 FVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231
+V+YS+ EA A N Q + + G+ ++ + +
Sbjct: 429 YVQYSSVDEARKAY---NELQGAEIDGRPIRLDFST 461
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 181 (68.8 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 37/95 (38%), Positives = 61/95 (64%)
Query: 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92
HF +FVG+L +V D +L+ FS YPS +V+ D++ G++RGFGFVSF++ A
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAW 87
Query: 93 NDLTGKWLGSRQIRCNWATKGAGNNE-DKQSSDAK 126
+ GK++GSR ++ + AT NE ++++ D+K
Sbjct: 88 REKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 176 (67.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 27 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 84
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 85 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 143
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 144 HGSAAERLLAAQNPLSQADRPHQLFADAP 172
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 175 (66.7 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 49/136 (36%), Positives = 68/136 (50%)
Query: 97 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
G+WLG RQIR NWAT+ + S+ K + S D E N +P N T
Sbjct: 3 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CT 49
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 216
VY G + +T+ + + F G I E+RV DKG+ FVR+++H AA AI N T
Sbjct: 50 VYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT 107
Query: 217 SSYLFGKQMKCSWGSK 232
+ G +KC WG +
Sbjct: 108 ---IEGHVVKCYWGKE 120
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 157 (60.3 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 37/105 (35%), Positives = 61/105 (58%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + GQPI++ W++ G R SG NIF+ +L + + L+ FS + S
Sbjct: 68 ALDTMNFEMIKGQPIRIMWSHRDPGLRR--SGMGNIFIKNLENSIDNKALYDTFSTFGSI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
++V++++ G SRGFGFV F + AQ AIN + G L R++
Sbjct: 126 LSSKVVYNEH-G-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKV 168
Score = 139 (54.0 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 29 DTSGH----FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 84
DT GH +++VGDL P+VT+A L+ FS + RV D T RS G+ +++F+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 85 QQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115
DA+ A++ + + + + IR W+ + G
Sbjct: 62 PADAERALDTMNFEMIKGQPIRIMWSHRDPG 92
Score = 125 (49.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 54/214 (25%), Positives = 92/214 (42%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTS------GHFNIFVGDLSPEVTDATLFACFS 55
AI ++NG L + + V + S Q+ + G NI+V +L ++ + L FS
Sbjct: 154 AINTMNGMLLNDRKVFVGH-FKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFS 212
Query: 56 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115
+ +VM D G+SRGFGF++F ++AQ A++ + GK + + + A K A
Sbjct: 213 QFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
Query: 116 NNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175
+ + + E N N + N+ + V+ + +T
Sbjct: 272 RQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVF--STYGVITS------- 322
Query: 176 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
A V+ E KGFGFV +S+ EA A+
Sbjct: 323 ----AKVMTES--SHSKGFGFVCFSSPEEATKAV 350
Score = 84 (34.6 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALA 208
+T +YV NL ++ + L F G + V+V RD +GFGF+ + H EA A
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGK--TQSVKVMRDSNGQSRGFGFINFEKHEEAQKA 247
Query: 209 IQMGNTTQSS 218
+ N + S
Sbjct: 248 VDHMNGKEVS 257
Score = 67 (28.6 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 213
+++ NL + L+ F + G+ + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMN 159
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 152 (58.6 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 38/105 (36%), Positives = 58/105 (55%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D+ G SRGFGFV F + AQ AIN + G L R++
Sbjct: 126 LSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Score = 130 (50.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + L + IR W+ + G
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPG 92
Score = 114 (45.2 bits), Expect = 0.00045, P = 0.00045
Identities = 37/116 (31%), Positives = 57/116 (49%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F NI+V +L +V + L FS
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112
+ +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 214 FGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Score = 77 (32.2 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-----FGFVRYSTHAEAAL 207
++T +YV NL +V + L F G + V+V RD FGFV + H EA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKML--SVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 208 AI 209
A+
Sbjct: 247 AV 248
Score = 63 (27.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 213
+++ NL + L+ F + G + +V +GFGFV + TH A AI N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMN 159
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 184 (69.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IFVGDL +VT+ L F YP+ A+V++D K G+SRGFGFVSF + D SA N
Sbjct: 200 FRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFD-KVGKSRGFGFVSFSSSSDYISAFN 258
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNE 118
+ GK++G+R I+ W + A NN+
Sbjct: 259 TMNGKYIGNRPIKLRKSKWKDRLASNNK 286
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 189 (71.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/168 (31%), Positives = 85/168 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAPENNPQYTTVYVGNLAPEVT 167
S A+ ++ N S+ D +AP P T V L P VT
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSVPTPVVTALGPGVT 233
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 44/111 (39%), Positives = 69/111 (62%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVA 173
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 44/111 (39%), Positives = 69/111 (62%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 44/111 (39%), Positives = 69/111 (62%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 44/111 (39%), Positives = 69/111 (62%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 168 (64.2 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS D++L F+ + ++A V+ D++TGRSRGFGFVSF + A +AI ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 96 TGKWLGSRQIRCNWATK 112
GK L RQIR N AT+
Sbjct: 97 DGKELNGRQIRVNLATE 113
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 165 (63.1 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92
HF +FVG+L P+ D L FS YPS S V D+KT +++GFGFV+F +D A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 93 NDLTGKWLGSRQIR 106
++ GK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 165 (63.1 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92
HF +FVG+L P+ D L FS YPS S V D+KT +++GFGFV+F +D A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 93 NDLTGKWLGSRQIR 106
++ GK++G ++
Sbjct: 115 QEMNGKYIGQHPVQ 128
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 185 (70.2 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 46/154 (29%), Positives = 76/154 (49%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
MAI LNG + +P+KV++A AS + S H N+++ L P VT+A L F +
Sbjct: 167 MAIEQLNGFEVDSKPLKVSYAQASSSQ---STHANLYINRLEPHVTNANLKEVFGSFGDV 223
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATKGAGNNE 118
D +++ D TG SR GFV F +++A A++ + G + S I +A + +GNN
Sbjct: 224 IDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIPFQSTPIYVKFANQLSGNNN 283
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
+++ + N ++ N NNP
Sbjct: 284 GNNNNNIINSNSNNNNNNNSNSNFNNNNGNFNNP 317
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 178 (67.7 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 43/111 (38%), Positives = 68/111 (61%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ TG S+G+GFV F ++ + + A+ + G LG + +R + A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173
Score = 83 (34.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 181 (68.8 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92
HF +FVG+L+ EVTD +LF FS Y S ARV+ D++T +S+G+GFVSF + D A
Sbjct: 226 HFRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAA 285
Query: 93 NDLTGKWLGSRQIRCNWAT 111
++ GK++GS + AT
Sbjct: 286 REMQGKYIGSHPVLLRRAT 304
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 162 (62.1 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 85
+ E+T IFVG LS + D L F ARV++++ T RSRG+G+V F N+
Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219
Query: 86 QDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNED-KQSSDAKS 127
A+ AI ++ GK + R I C+ +T K AGNN+ K+ D S
Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263
Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 32/132 (24%), Positives = 68/132 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA--SGQRE------DTSGHFN--IFVGDLSPEVTDATLF 51
AI + G+ + G+PI + + + +G + DT + +F+G+LS +F
Sbjct: 225 AIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
Query: 52 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111
F+ + R+ +T + +GFG+V F N +DA+ A++ L G+++ +R +R ++++
Sbjct: 285 ELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344
Query: 112 KGAGNNEDKQSS 123
N+ + S
Sbjct: 345 PRPNNDGGRGGS 356
Score = 60 (26.2 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 20/102 (19%), Positives = 50/102 (49%)
Query: 134 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ---LDLH-RHFHSLGAGVIEEVRVQ 189
G+++ K+ +T + ++ T+++GNL+ + +L +H + + +
Sbjct: 250 GNNDRAKKFGDTPSEPSD----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETE 305
Query: 190 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231
+ KGFG+V++S +A A+ + Q Y+ + ++ + S
Sbjct: 306 QPKGFGYVQFSNMEDAKKAL---DALQGEYIDNRPVRLDFSS 344
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 177 (67.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 66/210 (31%), Positives = 93/210 (44%)
Query: 23 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82
A + + S +FVG+L V A L F + V++D+ TGRSRGFGFV+
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM 139
Query: 83 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 142
+ + ++A G L R +R N A ED S +S ++GS G
Sbjct: 140 SSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFG-SSGSGYGGGGG 197
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVR 198
+ A N VYVGNL+ V + L F G V V RD KGFGFV
Sbjct: 198 SG--AGSGN----RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 199 YSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228
Y + E AI+ + + L G+Q++ S
Sbjct: 252 YDSSQEVQNAIK---SLDGADLDGRQIRVS 278
Score = 154 (59.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 22 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81
Y G ++VG+LS V D L + FS +ARV++D+ +GRS+GFGFV+
Sbjct: 192 YGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Query: 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
+ + Q+ Q+AI L G L RQIR + A
Sbjct: 252 YDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 47 (21.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRED 29
A NG L G+P++VN +RED
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKRED 175
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 176 (67.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL +V D L F+ +PS ARV+ D++TG+S+GFGFVSFR D A+
Sbjct: 198 FRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMK 257
Query: 94 DLTGKWLGSRQIRCNWAT 111
++ G+++GSR I+ +T
Sbjct: 258 EMDGRYVGSRPIKLRKST 275
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 143 (55.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D G SRGFGFV F + AQ AI + G L R++
Sbjct: 126 LSCKVVCDDH-G-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKV 168
Score = 132 (51.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 60/213 (28%), Positives = 95/213 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F NI+V +L +V + L FS
Sbjct: 154 AITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSR 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G SRGFGFV+F+ ++AQ A+ D+ GK + R + A K
Sbjct: 214 FGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++QS + +L K+ T N Y ++ E + + +
Sbjct: 271 --ERQSELKRRFEQL--------KQDRLTRYQGVN-LYVKNLDDSIDDEKLRKEFSPYGV 319
Query: 177 SLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
A V+ E KGFGFV +S+ EA A+
Sbjct: 320 ITSAKVMTEGG--HSKGFGFVCFSSPEEATKAV 350
Score = 126 (49.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + + IR W+ + G
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPG 92
Score = 84 (34.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T +YV NL +V + L F G + V+V RD +GFGFV + H EA
Sbjct: 189 EFTNIYVKNLHVDVDEQGLQDLFSRFGKML--SVKVMRDDSGHSRGFGFVNFQKHEEAQK 246
Query: 208 AIQMGNTTQSS 218
A+ N + S
Sbjct: 247 AVMDMNGKEVS 257
Score = 60 (26.2 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMG 212
+++ NL + L+ F + G I +V D +GFGFV + TH A AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGN--ILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTM 158
Query: 213 N 213
N
Sbjct: 159 N 159
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 181 (68.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 64/215 (29%), Positives = 101/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L G+ + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLRKAFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 118 (46.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIFV +L + + L+ S + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
V+ D+ G S+G+GFV F + A+ AI + G L R++
Sbjct: 127 SCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 111 (44.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 95 LTGKWLGSRQIRCNWATK 112
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 72 (30.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 134 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 190
G + KE E ++ VY+ N ++ L F G + +V +
Sbjct: 171 GQFKSRKER-EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225
KGFGFV + H +A A+ N + L GKQ+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQI 261
Score = 56 (24.8 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 192 KGFGFVRYSTHAEAALAIQMGN 213
KG+GFV + TH A AI+ N
Sbjct: 138 KGYGFVHFETHEAAERAIKKMN 159
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 176 (67.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 63/211 (29%), Positives = 99/211 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L G+ + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-TFEQMKQDRITRY-----QVVNLYVKNLDDGIDDERLRKAFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEA 205
G +V ++ R KGFGFV +S+ EA
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Score = 118 (46.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIFV +L + + L+ S + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
V+ D+ G S+G+GFV F + A+ AI + G L R++
Sbjct: 127 SCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168
Score = 111 (44.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS R+ D T S + +V+F++ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 95 LTGKWLGSRQIRCNWATK 112
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 72 (30.4 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 134 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 190
G + KE E ++ VY+ N ++ L F G + +V +
Sbjct: 171 GQFKSRKER-EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK 229
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225
KGFGFV + H +A A+ N + L GKQ+
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQI 261
Score = 56 (24.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 192 KGFGFVRYSTHAEAALAIQMGN 213
KG+GFV + TH A AI+ N
Sbjct: 138 KGYGFVHFETHEAAERAIKKMN 159
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 85
S HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+
Sbjct: 1 SDHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 55
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 177 (67.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 18 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF 77
V+W S +T F IF GDL EV D L FS YPS A+V+ D++TG+++G+
Sbjct: 288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGY 346
Query: 78 GFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
GFVSF++ D A+ ++ G+++GSR I+
Sbjct: 347 GFVSFKDPNDYVRAMREMNGRYVGSRPIK 375
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 147 (56.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 28 EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86
++ +F NI+V +++PEVTD F Y + + + DQ+TG+SRGFGFV+F + +
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS 123
DA A+ +L K + + A K E+ + S
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKS 331
Score = 127 (49.8 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VG+L P VT+A LF FS S + RV D T RS G+ +V++ D + A+ +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 95 LTGKWLGSRQIRCNWATK 112
L + R R W+ +
Sbjct: 122 LNYTLIKGRPCRIMWSQR 139
Score = 116 (45.9 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 26/104 (25%), Positives = 50/104 (48%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + +
Sbjct: 118 ALEELNYTLIKGRPCRIMWSQRDPALRKT-GQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D+ G S+G+GFV + + A AI + G L +++
Sbjct: 177 SCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219
Score = 102 (41.0 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 140 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFG 195
K+ ++ E +T +YV N+ PEVT + F G + + + + +GFG
Sbjct: 227 KKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Query: 196 FVRYSTHAEAALAIQ 210
FV +++H +A+ A+Q
Sbjct: 287 FVNFTSHEDASKAVQ 301
Score = 64 (27.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQM 211
V++ NL + LH F + G I +V +D KG+GFV Y T A+ AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGN--ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKH 208
Query: 212 GN 213
N
Sbjct: 209 VN 210
Score = 44 (20.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 187 RVQRDKGFGFVRYSTHAEAALAI 209
++ + KGFGFV ++ +A A+
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAV 450
Score = 43 (20.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191
Q +Y+ NL EV L + F G I +V RD
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGP--ITSAKVMRD 380
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 157 (60.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G LS DA+L F+ + DA+V+ D++TGRSRGFGFV+F ++ A +AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 96 TGKWLGSRQIRCN 108
GK L R IR N
Sbjct: 97 DGKELNGRHIRVN 109
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 157 (60.3 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G LS + T+ +L FS Y ++ V +++T RSRGFGFV+F N DA+ A+ +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 96 TGKWLGSRQIRCNWATKGAG 115
GK + R IR + A KG G
Sbjct: 67 NGKSVDGRTIRVDEAGKGGG 86
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 172 (65.6 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 42/111 (37%), Positives = 67/111 (60%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ D TG S+G+GFV F ++ + + A+ + G LG + +R + A
Sbjct: 124 RGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173
Score = 80 (33.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGF 196
T + P+N+P+Y+ ++VG+L P+V L+ F + G V++ V KG+GF
Sbjct: 85 TYGKQPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVS--KGYGF 141
Query: 197 VRYSTHAEAALAI 209
V+++ E A+
Sbjct: 142 VKFTDELEQKRAL 154
Score = 76 (31.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
+ GK L G+ ++ + N+AT G
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG 87
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 176 (67.0 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 140 (54.3 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 43/121 (35%), Positives = 61/121 (50%)
Query: 21 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFV 80
A A+G + G +++VGDL VTD+ LF F+ RV D T RS G+G+V
Sbjct: 34 AAAAGAAQQ--GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYV 91
Query: 81 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVV 129
++ QDA A+N+L L R IR ++ + G GN N DK S D K++
Sbjct: 92 NYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDK-SIDHKALH 150
Query: 130 E 130
E
Sbjct: 151 E 151
Score = 135 (52.6 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 58/215 (26%), Positives = 95/215 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH---F-NIFVGDLSPEVTDATLFACFSVY 57
AI LNG L + + V + + D SG F N++V +LS ++D L F +
Sbjct: 189 AIDKLNGMLLNDKQVYVG-PFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEF 247
Query: 58 PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 117
+ +M D + G+S+GFGFV+F N DA A++ L GK ++ W G
Sbjct: 248 GVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKE----WFV-GKAQK 301
Query: 118 EDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG-NLAP--EVTQLDLHRH 174
+ ++ ++ K E + + D + +N + T + + AP +T + R
Sbjct: 302 KSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD 361
Query: 175 FHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
+GV +G GFV +ST EA AI
Sbjct: 362 ----PSGV--------SRGSGFVAFSTPEEATRAI 384
Score = 118 (46.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ LN L G+ I+V ++ SG NIF+ +L + L FS +
Sbjct: 102 ALNELNFMALNGRAIRVMYSVRDPSLRK-SGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D +G+S+G+GFV + + AQ AI+ L G L +Q+
Sbjct: 161 SCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Score = 85 (35.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAG---VIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++T VYV NL+ ++ +L++ F G VI + KGFGFV + +AA A+
Sbjct: 222 KFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAV 281
Query: 210 QM--GNTTQSSYLF-GKQMKCS 228
G T F GK K S
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKS 303
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 176 (67.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 46/149 (30%), Positives = 78/149 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE-DGKETTNTEAP 148
S A+ ++ N S+ D +AP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAP 215
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 61 SDA 63
S A
Sbjct: 124 SIA 126
Score = 111 (44.1 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 88 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
A +A+ + G+ + ++++ NWAT + +D
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LSP TD L FS Y + DA VM D+ T RSRGFGFV++ + +A++A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDK 120
GK L R++ G G+ +D+
Sbjct: 65 DGKELNGRRVSVKLF--GIGDIDDE 87
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
T VYVGNL+P T L F G A V+ + R +GFGFV YS+H+EA A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 156 (60.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G L+ + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K +G+
Sbjct: 67 NGKAVDGRQIRVDQAGKSSGD 87
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 178 (67.7 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 61/218 (27%), Positives = 102/218 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + R+ G F N+++ +L ++ D L FS
Sbjct: 154 AIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSR 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DA+ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP---QYTTVYVGNLAPEVTQLDLHR 173
++ ++ K G + K + P++ Q +YV NL + L +
Sbjct: 271 ---ERQTELKHKF----GQMKQDKPKIE-QVPQDRSVRCQGVNLYVKNLDDGIDDERLRK 322
Query: 174 HFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 323 EFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAV 360
Score = 141 (54.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 32/104 (30%), Positives = 58/104 (55%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIFV +L + TL+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFVKNLDRSIDSKTLYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q++A+ AI + G +L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKV 168
Score = 122 (48.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 33/107 (30%), Positives = 58/107 (54%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D+ T RS G+ V+F+ +DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N D+ S D+K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDR-SIDSKTLYD 117
Score = 80 (33.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ NL ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N L GKQ+
Sbjct: 249 DEMNGKD---LNGKQI 261
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 155 (59.6 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ +
Sbjct: 25 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 84
Query: 61 S 61
S
Sbjct: 85 S 85
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 155 (59.6 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 155 (59.6 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 155 (59.6 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 170 (64.9 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 62/215 (28%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + +VM D TGRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 214 FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q EL + +E N Q +YV NL + L + F
Sbjct: 271 --ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V + KGFGFV +S+ EA A+
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 137 (53.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V+ D+ G SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 126 LSCKVVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERE 180
Query: 121 QSSDAKSVVELTN 133
AK V+E TN
Sbjct: 181 LEYGAK-VMEFTN 192
Score = 130 (50.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + R IR W+ + G
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPG 92
Score = 86 (35.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F + G + +V + R +GFGFV Y H EA A+
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAV 248
Query: 210 QMGN 213
N
Sbjct: 249 SEMN 252
Score = 54 (24.1 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 213
V++ NL + L+ F + G + +V +G+GFV + T A AIQ N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 170 (64.9 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 42/111 (37%), Positives = 67/111 (60%)
Query: 6 LNGRHLFGQ-P---IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G P K+N+A G++ D S +++FVGDL+ +V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWA 110
+V+ DQ G S+G+GFV F ++ + + A+ + G LGS+ +R + A
Sbjct: 124 RGGKVVLDQ-AGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 154 (59.3 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG L+ E T+ +L FS Y ++ V+ D+++ RSRGFGFV+F N +DA+ A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSND 88
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 154 (59.3 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+L+ V DA L F+ Y + A+V+ D+ TGRSRGFGFV + Q+AQ+AI L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 96 TGKWLGSRQIRCNWA 110
GK + R + N A
Sbjct: 65 NGKEMDGRNLMVNEA 79
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 125 (49.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ +LNG L + IKV++A S E G N++V L ++ L F+ +
Sbjct: 101 AVNTLNGLRLQNKVIKVSYARPSS--ESIKGA-NLYVSGLPKNLSQPDLEGMFASFGKII 157
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ D +G S+G GF+ F + +A+ AI +L GK
Sbjct: 158 TSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 125 (49.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 89
T + IFV +L+PE + L+ F + + +V+ D +T + +GFGFV+ N +A
Sbjct: 269 TGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAV 328
Query: 90 SAINDLTGKWLGSRQIRCNWAT 111
AI L G LG+R ++ ++ T
Sbjct: 329 VAIQSLNGYTLGNRVLQVSFKT 350
Score = 91 (37.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 212
++V NLAPE + L + F GA VI +++ + KGFGFV + + EA +AIQ
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 213 N 213
N
Sbjct: 335 N 335
Score = 80 (33.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
G+S G+GFV++ +DA+ A+N L G L ++ I+ ++A
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYA 120
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 158 (60.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 123 (48.4 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 29/104 (27%), Positives = 54/104 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+ FV F Q+ A AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Score = 120 (47.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 95 (38.5 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTL--SVKVMRDCSGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEMS 257
Score = 43 (20.2 bits), Expect = 9.4e-11, Sum P(3) = 9.4e-11
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGTVAAA 629
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 50/184 (27%), Positives = 80/184 (43%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+F+ L T TL + FS + RVM D TG SRGFGFV F++ AQ AIN
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ G + ++ + +A +N S++ + N ++ + NT +
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDD-DNNNNNNNNNSNNNNTNNIDEQKIS 218
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIE-----EVRVQRDKGFGFVRYSTHAEAALAI 209
V++ L E + L F + G V+E ++ +G G VRY A A+
Sbjct: 219 NNVFIRGLPIEFDKNQLSELFSAYGE-VVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 210 QMGN 213
+ N
Sbjct: 278 KSLN 281
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 130 (50.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 180 ITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 367 NGYRLGDRVLQVSFKT 382
Score = 119 (46.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 116
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 165 (63.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 29/73 (39%), Positives = 51/73 (69%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
+ +F GDL EV D L F+ +P+ + A+V+ D++TG+++G+GFVSF N D +A+
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 94 DLTGKWLGSRQIR 106
++ GK++G+R I+
Sbjct: 197 EMNGKYVGNRPIK 209
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 158 (60.7 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 123 (48.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 29/104 (27%), Positives = 54/104 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+ FV F Q+ A AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV 168
Score = 120 (47.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 95 (38.5 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLRELFSQFGKTL--SVKVMRDCSGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEMS 257
Score = 43 (20.2 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 640 QAHHAKKEAAQKVGTVAAA 658
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 173 (66.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 327 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 386
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 387 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 422
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 158 (60.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D L FS
Sbjct: 83 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQ 142
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 143 FGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-- 199
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 200 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 244
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 245 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 279
Score = 121 (47.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 13 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 72
G+PI++ W+ SG N+F+ +L + + L+ FS + + +V+ D+ G
Sbjct: 8 GKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-G 65
Query: 73 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
S+G+ FV F Q+ A AI + G L R++
Sbjct: 66 -SKGYAFVHFETQEAANKAIEKMNGMLLNDRKV 97
Score = 120 (47.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 224 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 281
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 282 MNGRIVGSKPL 292
Score = 95 (38.5 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 118 EFTNVYIKNFGEEVDDENLRELFSQFGKTL--SVKVMRDCSGKSKGFGFVSYEKHEDANK 175
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 176 AVEEMNGKEMS 186
Score = 43 (20.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 568 QAHHAKKEAAQKVGTVAAA 586
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 128 (50.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 325 NGYRLGDRVLQVSFKT 340
Score = 119 (46.9 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Score = 37 (18.1 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 53/177 (29%), Positives = 84/177 (47%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ + ++ D L F + +VM D+ +G+S+GFGFVSF +DAQ A+++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 83
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ GK L +QI A K ++Q+ EL E K+ T Q
Sbjct: 84 MNGKELNGKQIYVGRAQKKV----ERQT-------ELKR-KFEQMKQDRITRY-----QG 126
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
+YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 127 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 183
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 169 (64.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F +F GDL EV+D L F YPS A+V+ + +T +S+G+GFVSFR+ +D A+
Sbjct: 203 FRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMR 262
Query: 94 DLTGKWLGSRQIR 106
++ GK++G+R I+
Sbjct: 263 EMDGKYVGNRPIK 275
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 173 (66.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 408
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 409 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 444
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 173 (66.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 408
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 409 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 444
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 173 (66.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 359 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 418
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 419 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 454
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 128 (50.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
Score = 119 (46.9 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
Score = 112 (44.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 128 (50.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 338 NGYRLGDRVLQVSFKT 353
Score = 112 (44.5 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Score = 37 (18.1 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 128 (50.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 152 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 339 NGYRLGDRVLQVSFKT 354
Score = 119 (46.9 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 31 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Score = 37 (18.1 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 165 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 434
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 435 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 434
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 435 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 434
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 435 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 378 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 437
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 438 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 473
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 440
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 441 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 476
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 385 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 444
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 445 EMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 480
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 171 (65.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 44/133 (33%), Positives = 73/133 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS +
Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D +G S+GF F++F + + + +A+ + G++L +R I ++A K E +
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE-R 186
Query: 121 QSSDAKSVVELTN 133
+ A+ ++ N
Sbjct: 187 HGTAAERMLAAQN 199
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 171 (65.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 44/133 (33%), Positives = 73/133 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS +
Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D +G S+GF F++F + + + +A+ + G++L +R I ++A K E +
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGE-R 186
Query: 121 QSSDAKSVVELTN 133
+ A+ ++ N
Sbjct: 187 HGTAAERMLAAQN 199
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 128 (50.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 180 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 366 NGYRLGDRVLQVSFKT 381
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 59 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 116
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 117 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 193 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 238
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 128 (50.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 121 (47.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 367 NGYRLGDRVLQVSFKT 382
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 153
Score = 86 (35.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 194 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 239
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 128 (50.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 180
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 181 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
SG ED+ N+ V L +T L + F +++ D+ TG+S G+GFV++
Sbjct: 60 SGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 117
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 118 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 153
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 96 TGKWLGSRQIR 106
G LG R ++
Sbjct: 368 NGYRLGDRVLQ 378
Score = 86 (35.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 194 SRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 239
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 128 (50.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 124 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 180 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 121 (47.7 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 368 NGYRLGDRVLQVSFKT 383
Score = 104 (41.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSF 82
S ED+ N+ V L +T L + F +++ D+ T G+S G+GFV++
Sbjct: 58 SNNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 83 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Score = 86 (35.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 174 (66.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 65/215 (30%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y + RVM D+ G+SRGFGFVSF +DAQ A++++ GK + + I A K
Sbjct: 214 YGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRMTRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V + R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 119 (46.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS + RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + R +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 69 (29.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N ++ L F G + +RV D +GFGFV + H +A
Sbjct: 189 EFTNVYIKNFGEDMDDDKLKDIFSKYGNAM--SIRVMTDENGKSRGFGFVSFERHEDAQR 246
Query: 208 AIQMGN 213
A+ N
Sbjct: 247 AVDEMN 252
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 159 (61.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G LS + T+ +L FS Y + + V+ D++T RSRGFGFV+F N +DA+ A+ +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 96 TGKWLGSRQIRCNWATKGAGNN 117
GK + R IR + A K G +
Sbjct: 85 NGKQVDGRMIRVDEAGKSGGRS 106
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 151 (58.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G L+ E + L F+ Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 96 TGKWLGSRQIRCNWATKGAG 115
GK + RQIR + A K +G
Sbjct: 67 NGKSVDGRQIRVDQAGKSSG 86
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 128 (50.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 136 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 191
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 192 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 229
Score = 121 (47.7 bits), Expect = 0.00010, P = 0.00010
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 379 NGYRLGDRVLQVSFKT 394
Score = 86 (35.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 169 (64.5 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 38/113 (33%), Positives = 66/113 (58%)
Query: 6 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 65
+NG L+G+PI+VN A A Q+ G +FVG+L P VT+ L+ FS + + +
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGA-ELFVGNLDPMVTEQVLYDTFSRFGNLVNLPK 132
Query: 66 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ + S+G+GFVSF + + + +AI ++ G++L ++Q+ +A K G E
Sbjct: 133 VARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGE 185
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 131 (51.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 101 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 156
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 157 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 211
Query: 119 DKQSSDA 125
++SS A
Sbjct: 212 SQKSSQA 218
Score = 125 (49.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 330 NGYRLGDRVLQVSFKTNKA 348
Score = 108 (43.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 35 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 93
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 94 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 129
Score = 80 (33.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 150 (57.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + L FS Y + V+ D++T RSRGFGFV+F N +DA+ A+ +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + +
Sbjct: 68 NGKTVDGRQIRVDQAGKSSND 88
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 172 (65.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 90 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 149
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 150 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 206
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 207 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 251
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 252 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 286
Score = 130 (50.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 4 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 62
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 63 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 104
Score = 79 (32.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 125 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 184
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 185 DEMNGKE---LNGKQI 197
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 131 (51.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 213
Query: 119 DKQSSDA 125
++SS A
Sbjct: 214 SQKSSQA 220
Score = 125 (49.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 108 (43.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 37 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131
Score = 80 (33.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 131 (51.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 213
Query: 119 DKQSSDA 125
++SS A
Sbjct: 214 SQKSSQA 220
Score = 125 (49.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
Score = 108 (43.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 37 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131
Score = 80 (33.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 169 (64.5 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 64/217 (29%), Positives = 101/217 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + +VM D +GRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 214 FGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++QS EL + +E N Q +YV NL + L + F
Sbjct: 271 --ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRKEF- 314
Query: 177 SLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 209
L G I +V + KGFGFV +S+ EA A+
Sbjct: 315 -LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 132 (51.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V+ D+ G SRG+GFV F + A AI + G L R++ + E +
Sbjct: 126 LSCKVVCDEH-G-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERE 180
Query: 121 QSSDAKSVVELTN 133
AK V+E TN
Sbjct: 181 LEYGAK-VMEFTN 192
Score = 123 (48.4 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL P+VT+A L+ FS RV D T RS + +++F+ DA+ A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + R IR W+ + G
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPG 92
Score = 86 (35.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F + G + +V + R +GFGFV Y H EA A+
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAV 248
Query: 210 QMGN 213
N
Sbjct: 249 SEMN 252
Score = 62 (26.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 213
V++ NL + L+ F + G + +V +G+GFV + TH A AIQ N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMN 159
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 131 (51.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 218
Query: 119 DKQSSDA 125
++SS A
Sbjct: 219 SQKSSQA 225
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 350 NGYRLGDRVLQVSFKTNKA 368
Score = 108 (43.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 42 TGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136
Score = 80 (33.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 131 (51.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 206
Query: 119 DKQSSDA 125
++SS A
Sbjct: 207 SQKSSQA 213
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 108 (43.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 30 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 80 (33.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 131 (51.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 206
Query: 119 DKQSSDA 125
++SS A
Sbjct: 207 SQKSSQA 213
Score = 125 (49.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
Score = 108 (43.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 30 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124
Score = 80 (33.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 131 (51.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 213
Query: 119 DKQSSDA 125
++SS A
Sbjct: 214 SQKSSQA 220
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 108 (43.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 37 TGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131
Score = 80 (33.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 131 (51.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 103 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 158
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 159 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 213
Query: 119 DKQSSDA 125
++SS A
Sbjct: 214 SQKSSQA 220
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
Score = 108 (43.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 37 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131
Score = 80 (33.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 172 (65.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 79 (32.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 172 (65.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 79 (32.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 171 (65.3 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 65/210 (30%), Positives = 101/210 (48%)
Query: 5 SLNGRHLFGQPIKVNWAYASGQREDTSGH---FNIFVGDLSPEVTDATLFACFSVYPSCS 61
+L+G ++G+ + V +R +G+ N++V +L VTD L FS Y + S
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVS 229
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
VM D GRSRGFGFV+F N ++A+ A+ L G LGS+++ A K +D++
Sbjct: 230 SVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK-----KDER 283
Query: 122 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 181
K K + N A + N +++ +YV NL+ + + L F G
Sbjct: 284 REMLKQ------------KFSDNFIA-KPNMRWSNLYVKNLSESMNETRLREIFGCYGQI 330
Query: 182 VIEEVRVQ---RDKGFGFVRYSTHAEAALA 208
V +V R KGFGFV +S E+ A
Sbjct: 331 VSAKVMCHENGRSKGFGFVCFSNCEESKQA 360
Score = 126 (49.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 2 AILSLNGRHLFGQPIKVNWAYA--SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 59
A+ LN L G+ +++ W+ + +R +G N++V +L +T + L F + S
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGS 137
Query: 60 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATK----GA 114
+V+ ++ G+S+GFGFV F +Q A SA + L G + G + + K
Sbjct: 138 ILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAM 195
Query: 115 GNNEDKQSSDAKSVVE 130
N+D + K+++E
Sbjct: 196 AGNQDSTNVYVKNLIE 211
Score = 103 (41.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 23 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82
A G + +S +++VGDLSP+VT+ L FS+ + + TG+S + +++F
Sbjct: 10 ALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINF 69
Query: 83 RNQQDAQSAINDLTGKWLGSRQIRCNWATK 112
+ A +A+ L L + +R W+ +
Sbjct: 70 DSPFSASNAMTRLNHSDLKGKAMRIMWSQR 99
Score = 93 (37.8 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 45/146 (30%), Positives = 59/146 (40%)
Query: 97 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET-----TNTE---AP 148
G L + + N +KG G + A S +GS GK+ N + A
Sbjct: 136 GSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAM 195
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYST-- 201
N T VYV NL VT LH F G + V V RD +GFGFV +
Sbjct: 196 AGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT--VSSVVVMRDGMGRSRGFGFVNFCNPE 253
Query: 202 HAEAALAIQMGNTTQSSYLF-GKQMK 226
+A+ A+ G S LF GK +K
Sbjct: 254 NAKKAMESLCGLQLGSKKLFVGKALK 279
Score = 77 (32.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
+ +YV NL +T L R F G+ V+EE + KGFGFV++ T A A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENG--QSKGFGFVQFDTEQSAVSA- 167
Query: 210 QMGNTTQSSYLFGKQM 225
+ S ++GK++
Sbjct: 168 --RSALHGSMVYGKKL 181
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 131 (51.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 119 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 174
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 175 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 229
Query: 119 DKQSSDA 125
++SS A
Sbjct: 230 SQKSSQA 236
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 361 NGYRLGDRVLQVSFKTNKA 379
Score = 108 (43.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 53 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 111
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 112 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 147
Score = 80 (33.2 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 131 (51.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 107 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 162
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 163 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 217
Query: 119 DKQSSDA 125
++SS A
Sbjct: 218 SQKSSQA 224
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 363 NGYRLGDRVLQVSFKTNKA 381
Score = 108 (43.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 41 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 99
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 100 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 135
Score = 80 (33.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 131 (51.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 218
Query: 119 DKQSSDA 125
++SS A
Sbjct: 219 SQKSSQA 225
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 108 (43.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 42 TGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136
Score = 80 (33.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 131 (51.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 45/127 (35%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA-----NNP 218
Query: 119 DKQSSDA 125
++SS A
Sbjct: 219 SQKSSQA 225
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 96 TGKWLGSRQIRCNWATKGA 114
G LG R ++ ++ T A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
Score = 108 (43.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 42 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136
Score = 80 (33.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+ VG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSEN 88
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+ VG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSEN 88
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+ VG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSEN 88
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86
R+ T I+VG LS +VT L + F Y +A+++ D++TGRS+GF F+++ Q
Sbjct: 11 RKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
AQ A++ G L R+IR N A + G+
Sbjct: 71 AAQEAVSKANGIDLQGRKIRVNIARENTGD 100
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 149 (57.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86
R+ T I+VG LS +VT L + F Y +A+++ D++TGRS+GF F+++ Q
Sbjct: 11 RKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQD 70
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
AQ A++ G L R+IR N A + G+
Sbjct: 71 AAQEAVSKANGIDLQGRKIRVNIARENTGD 100
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 146 (56.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/104 (30%), Positives = 59/104 (56%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ +LN ++ GQP ++ W++ SG NIFV +L + + LF FS++ +
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRK-SGTGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D+ G+S+ +GFV + +++ A+ AI + G LGS+ +
Sbjct: 132 SCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 119 (46.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
L + + R W+ + G GN N DK S D K++ +
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDK-SIDNKALFD 122
Score = 91 (37.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 36/153 (23%), Positives = 67/153 (43%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSC 60
AI +NG L + + V +R F N++V + VT+ L F+ Y
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEI 219
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGAGNNED 119
+ V D K +R F F+++ + + A++A+++L GK + QI + K ++
Sbjct: 220 TSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPK-----KE 271
Query: 120 KQSSDAKSVVELTNGSSED--GKETTNTEAPEN 150
+ ++ T G+ D K N +A +N
Sbjct: 272 EATASTSGAANQTTGTDADKTDKNDKNNKADKN 304
Score = 73 (30.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 141 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFG 195
+ N E +N Q +Y+ NL + + L F G I +V RD KGFG
Sbjct: 437 DNLNVEN-KNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT--ITSAKVMRDEKEQSKGFG 493
Query: 196 FVRYSTHAEAALAI 209
FV +++ EA A+
Sbjct: 494 FVCFASQEEANKAV 507
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 146 (56.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/104 (30%), Positives = 59/104 (56%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ +LN ++ GQP ++ W++ SG NIFV +L + + LF FS++ +
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRK-SGTGNIFVKNLDKSIDNKALFDTFSMFGNIL 131
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D+ G+S+ +GFV + +++ A+ AI + G LGS+ +
Sbjct: 132 SCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNV 174
Score = 119 (46.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL+ +VT+A L+ F+ S RV D T +S G+ +V++ N DA+ A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
L + + R W+ + G GN N DK S D K++ +
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDK-SIDNKALFD 122
Score = 91 (37.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 36/153 (23%), Positives = 67/153 (43%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSC 60
AI +NG L + + V +R F N++V + VT+ L F+ Y
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEI 219
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGAGNNED 119
+ V D K +R F F+++ + + A++A+++L GK + QI + K ++
Sbjct: 220 TSMIVKMDNK---NRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPK-----KE 271
Query: 120 KQSSDAKSVVELTNGSSED--GKETTNTEAPEN 150
+ ++ T G+ D K N +A +N
Sbjct: 272 EATASTSGAANQTTGTDADKTDKNDKNNKADKN 304
Score = 73 (30.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 141 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFG 195
+ N E +N Q +Y+ NL + + L F G I +V RD KGFG
Sbjct: 437 DNLNVEN-KNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT--ITSAKVMRDEKEQSKGFG 493
Query: 196 FVRYSTHAEAALAI 209
FV +++ EA A+
Sbjct: 494 FVCFASQEEANKAV 507
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 171 (65.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 109 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 168
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 169 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 225
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 226 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 270
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 271 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 305
Score = 130 (50.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 23 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 81
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 82 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 123
Score = 77 (32.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 144 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 203
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 204 DEMNGKE---LNGKQI 216
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 127 (49.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 44/127 (34%), Positives = 65/127 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS +
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQFGRI 180
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNE 118
+R++ DQ TG SRG GF+ F + +A+ AI L G K G+ + I +A NN
Sbjct: 181 ITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFA-----NNP 235
Query: 119 DKQSSDA 125
++SS A
Sbjct: 236 SQKSSQA 242
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ + L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 367 NGYRLGDRVLQVSFKT 382
Score = 112 (44.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+ V L +T L + F +++ D+ TG+S G+GFV++ +DA+ AIN
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 95 LTGKWLGSRQIRCNWATKGAGNNED 119
L G L ++ I+ ++A + + D
Sbjct: 129 LNGLRLQTKTIKVSYARPSSASIRD 153
Score = 84 (34.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
++V NLAP+ + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 171 (65.3 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 122 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 181
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 182 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 238
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 239 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 283
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 284 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 318
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK 112
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 132 (51.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +LNG L + IKV++A S D+ N+++ L +T + F Y
Sbjct: 91 AISTLNGLRLQSKTIKVSYARPSS---DSIKDANLYISGLPKTMTQKDVEEMFGRYGRII 147
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
++RV+ DQ +G SRG F+ F + +A+ AI DL G+
Sbjct: 148 NSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 111 (44.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+ V L ++ L + FS A+++ D+ G S G+GFV++ N DA+ AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 95 LTGKWLGSRQIRCNWATKGAGNNED 119
L G L S+ I+ ++A + + +D
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKD 119
Score = 76 (31.8 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 198
+ P N+ +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 246 SGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 305
Query: 199 YSTHAEAALAI 209
+ + EAA+AI
Sbjct: 306 MTHYEEAAMAI 316
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 171 (65.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 65/215 (30%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y + +VM D G+SRGFGFVSF +DAQ A++D+ GK L + I A K
Sbjct: 214 YGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFT 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/104 (28%), Positives = 57/104 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI+ + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 126 (49.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 126 (49.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 171 (65.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 63/215 (29%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y RVM D +G+S+GFGFVSF +DAQ A++++ GK + +Q+ A K
Sbjct: 214 YGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKG-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRMTRY-----QGVNLYVKNLDDGLDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 127 (49.8 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + R +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/132 (27%), Positives = 64/132 (48%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+GFV F + A+ AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVG-RFKSRKEREAEM 183
Query: 122 SSDAKSVVELTN 133
+ AK E TN
Sbjct: 184 GARAK---EFTN 192
Score = 77 (32.2 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N ++ L F G + +RV D KGFGFV + H +A
Sbjct: 189 EFTNVYIKNFGEDMDDEKLKEIFCKYGPAL--SIRVMTDDSGKSKGFGFVSFERHEDAQR 246
Query: 208 AIQMGNTTQSSYLFGKQM 225
A+ N + + GKQ+
Sbjct: 247 AVDEMNGKEMN---GKQV 261
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 118 (46.6 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+ T+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 171 (65.3 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 63/215 (29%), Positives = 99/215 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 130 (50.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 143 (55.4 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 60/217 (27%), Positives = 94/217 (43%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F N+++ + ++ L F+
Sbjct: 154 AIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTE 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ VM D++ GRSRGFGFV+F N DA+ A+ ++ GK L R + A K
Sbjct: 214 FGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRL-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q EL + +E Q +YV NL + L + F
Sbjct: 271 --ERQG-------ELKRKFEQIKQERIQRY------QGVNLYVKNLDDSIDDEKLRKEFA 315
Query: 177 SLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 209
G I +V D +GFGFV +S+ EA A+
Sbjct: 316 PYGT--ITSAKVMTDGGHSRGFGFVCFSSPEEATKAV 350
Score = 139 (54.0 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 42/150 (28%), Positives = 76/150 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+PI++ W+ G R+ SG NIF+ ++ + + L+ FS + +
Sbjct: 68 ALDTMNYEVIKGRPIRIMWSQRDPGLRK--SGVGNIFIKNMDESIDNKALYDTFSAFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V+ D+ G S+G+GFV F Q+ A AI + G L R++ + E +
Sbjct: 126 LSCKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDRKV---FVGHFKSRKERE 180
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPEN 150
AK+V E TN ++ E ++E +N
Sbjct: 181 AEMGAKAV-EFTNVYIKNFGEDIDSEKLKN 209
Score = 122 (48.0 bits), Expect = 5.9e-08, Sum P(3) = 5.9e-08
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + R IR W+ + G
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPG 92
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + V R +GFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAV 248
Query: 210 -QM-GNTTQSSYLF-GKQMK 226
+M G L+ G+ K
Sbjct: 249 TEMNGKELNGRVLYVGRAQK 268
Score = 52 (23.4 bits), Expect = 5.9e-06, Sum P(3) = 5.9e-06
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 213
+++ N+ + L+ F + G + +V + KG+GFV + T A AI+ N
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMN 159
Score = 39 (18.8 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 290 AMGVGSAGASQAIYDGGFQNV 310
A G G SQ Y G +NV
Sbjct: 490 AAGTAVRGVSQYKYSAGVRNV 510
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 164 (62.8 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFVG LSPEVTD L FS + D ++M ++ TGRSRGFGF++F +++ +I ++
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAK 126
G+ G R I N A G +D +S ++
Sbjct: 69 HGRDFGDRVISVNRAEPKLGR-DDGESHGSR 98
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 128 (50.1 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 108 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 163
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 164 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 350 NGYRLGDRVLQVSFKT 365
Score = 108 (43.1 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G D S N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 42 TGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ +DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136
Score = 80 (33.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Score = 38 (18.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 177 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKT 222
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 129 (50.5 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L +T L FS Y
Sbjct: 145 AINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMTQKELEQLFSQYGRI 200
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 98
+R++ DQ TG SRG GF+ F + +A+ AI L G+
Sbjct: 201 ITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSP+ ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 387 NGYRLGDRVLQVSFKT 402
Score = 109 (43.4 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 25 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 84
G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++ +
Sbjct: 81 GSNDDSKT--NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 138
Query: 85 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+DA+ AIN L G L ++ I+ ++A + + D
Sbjct: 139 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 173
Score = 80 (33.2 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+P+ + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Score = 38 (18.4 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156
++G G + +A+ ++ NG G T NNP T
Sbjct: 214 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKT 259
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 91
G + IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A A
Sbjct: 282 GGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMA 341
Query: 92 INDLTGKWLGSRQIRCNWAT 111
I L G LG R ++ ++ T
Sbjct: 342 IASLNGYRLGERVLQVSFKT 361
Score = 124 (48.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 124 (48.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 346 NGYRLGERVLQVSFKT 361
Score = 124 (48.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A AI L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 96 TGKWLGSRQIRCNWAT 111
G LG R ++ ++ T
Sbjct: 347 NGYRLGERVLQVSFKT 362
Score = 124 (48.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 96 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKEMEQLFSQYGRI 151
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ TG SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 152 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 196
Score = 106 (42.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 31 NGATDDSKT--NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 89 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124
Score = 84 (34.6 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 146 (56.5 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
+ FVG L+ D L F+ Y D++++ D++TGRSRGFGFV+F++++ + AI
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 94 DLTGKWLGSRQIRCNWA-TKGAG 115
+ G+ L R I N A ++G+G
Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSG 90
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 167 (63.8 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 53/177 (29%), Positives = 84/177 (47%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ + ++ D L F + +VM D+ +G+S+GFGFVSF +DAQ A+++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 82
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ GK L +QI A K ++Q+ EL E K+ T Q
Sbjct: 83 MNGKELNGKQIYVGRAQKKV----ERQT-------ELKR-KFEQMKQDRITRY-----QG 125
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
+YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 126 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 182
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 132 (51.5 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +LNG L + IKV++A S D N+++ L +T + F+ Y
Sbjct: 121 AINTLNGLRLQSKTIKVSYARPSS---DGIKDANLYISGLPKTMTQKNVEDMFTQYGRII 177
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLG-SRQIRCNWATKGAGNNED 119
++R++ DQ +G SRG F+ F + +A+ AI DL G K G S I +A A N+
Sbjct: 178 NSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFA---ANPNQS 234
Query: 120 KQS 122
K S
Sbjct: 235 KNS 237
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 15 PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 73
P+ V+ + +S +S + IFV +L + + L+ F + + ++ +V+ D T +
Sbjct: 266 PMSVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 74 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109
+GFGFV+ N ++A AI+ L G LG + ++ ++
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSF 361
Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSR--------GFGF 79
E + N+ + L ++ L + FS A+++ D+ G S G+GF
Sbjct: 50 EPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGF 109
Query: 80 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
V++ N DA+ AIN L G L S+ I+ ++A + +D
Sbjct: 110 VNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKD 149
Score = 74 (31.1 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 212
++V NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 213 N 213
N
Sbjct: 348 N 348
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 145 (56.1 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIR 106
GK + RQIR
Sbjct: 68 NGKSVDGRQIR 78
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 145 (56.1 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
+ FVG L+ D L FS + D++++ D+++GRSRGFGFV+F++++ + AI
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 94 DLTGKWLGSRQIRCNWA-TKGAG 115
++ GK L R I N A ++G+G
Sbjct: 66 EMNGKELDGRVITVNEAQSRGSG 88
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 158 (60.7 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 183
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 184 GAKAK---EFTNVYIKNFGEEVDDENLKELFSQF 214
Score = 120 (47.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 93 (37.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTL--SVKVMRDPSGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEIS 257
Score = 43 (20.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGAVAAA 629
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFV +L+P+ + L+ F + + +V+ D ++ + +GFGFV+ N ++A AI L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQS 122
G LG+R ++ ++ T N++KQ+
Sbjct: 423 NGYTLGNRVLQVSFKT-----NKNKQT 444
Score = 117 (46.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 42/140 (30%), Positives = 62/140 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +LNG L + IKV+ A S E G N++V L +T + L + FS Y
Sbjct: 167 AINALNGLRLQNKTIKVSIARPSS--ESIKGA-NLYVSGLPKNMTQSDLESLFSPYGKII 223
Query: 62 DARVMWDQKTGR-----SRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATKGA 114
+R++ D TG S+G GF+ F + +A AI +L G + I +A +
Sbjct: 224 TSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPS 283
Query: 115 GNNEDKQSSDAKSVVELTNG 134
N Q A + T G
Sbjct: 284 SNKNSMQPLAAYIAPQNTRG 303
Score = 105 (42.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 49 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108
+LF F SC +++ D+ TG+S G+GFV++ Q+DA+ AIN L G L ++ I+ +
Sbjct: 128 SLFVSFGEVESC---KLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVS 184
Query: 109 WA 110
A
Sbjct: 185 IA 186
Score = 92 (37.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 35/103 (33%), Positives = 48/103 (46%)
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
N + SS LT+ +G NT A ++V NLAP+ + L + F
Sbjct: 327 NAGRYSSVISRYSPLTSDLITNGMIQGNTIASSG----WCIFVYNLAPDTEENVLWQLFG 382
Query: 177 SLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGN 213
GA ++ V+V RD KGFGFV + + EA LAIQ N
Sbjct: 383 PFGA--VQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLN 423
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 160 (61.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 47/117 (40%), Positives = 66/117 (56%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASG-QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 59
MA LS GR LF Q A +S Q IFVG +S + L FS Y
Sbjct: 1 MAFLSKVGR-LFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGE 59
Query: 60 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAG 115
DA+++ D++TGRSRGF FV+F + ++A +A+ L G+ L R+IR N+AT +G+G
Sbjct: 60 VVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSG 115
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 161 (61.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 43/114 (37%), Positives = 63/114 (55%)
Query: 6 LNGRHLFGQ--PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCS 61
LNG+ + G P K YA+ G+R + F++FVGDL+ EV D L F +PSC
Sbjct: 68 LNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCK 127
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWAT-KG 113
A+V+ D G SRG+GFV F ++ + + A+ + LG + IR + A KG
Sbjct: 128 GAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKG 180
Score = 89 (36.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF-----HSLGAGVIEEVRVQRDKGFGFV 197
T + PE P+++ V+VG+L EV LH+ F GA V+ + +G+GFV
Sbjct: 88 TYGKRPEPGPEFS-VFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDP-YGNSRGYGFV 145
Query: 198 RYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228
++S E A++ +S L GK ++ S
Sbjct: 146 KFSDENEQKKALE--EFQNASGLGGKPIRIS 174
Score = 80 (33.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + FS + +++ + TG S G+ FV ++ +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 94 DLTGKWL-GS---RQIRCNWATKG 113
L GK + GS R+ + N+AT G
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG 90
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 157 (60.3 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D +L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 183
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 184 GAKAK---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 120 (47.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 92 (37.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTL--SVKVMRDPNGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEIS 257
Score = 43 (20.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 595 QAHHAKKEAAQKVGAVAAA 613
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G L+ E + L A F Y + +M D++T +SRGF FV+F + DA+ A D+
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 96 TGKWLGSRQIRCNWATKGAGNN 117
GK L + I+ ATK + N
Sbjct: 70 NGKSLDGKAIKVEQATKPSFEN 91
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 146 (56.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 35/104 (33%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI LN L+G+PI+V +++ SG NIF+ +L + L FS + +
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIV 151
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D +G+S+G+GFV + N++ AQ AI L G L +Q+
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/225 (24%), Positives = 99/225 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH--F-NIFVGDLSPEVTDATLFACFSVYP 58
AI LNG L + + V +R+ T+ F N++V +L+ TD L F Y
Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ A VM D + G+S+GFGFV+F N DA A+ L G ++ W G +
Sbjct: 240 KITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYV-GRAQKK 293
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ ++ + E + D +++N +P +++ E + ++ F ++
Sbjct: 294 SERETELRVRYEQNLKEAADKFQSSNLYVKNLDP--------SISDEKLK-EIFSPFGTV 344
Query: 179 GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM--GNTTQSSYLF 221
+ + KG GFV ++T EA A+ G +S L+
Sbjct: 345 TSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Score = 137 (53.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 46/125 (36%), Positives = 62/125 (49%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYA-SGQREDTS-GHFNIFVGDLSPEVTDATLFACFSVYP 58
MA + L G+ G V A A SG T G+ +++VGDL VTD+ LF F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK------ 112
+ RV D T RS G+G+V+F N QDA AI +L L + IR ++ +
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 113 -GAGN 116
GAGN
Sbjct: 121 SGAGN 125
Score = 73 (30.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 213
+++ NL + LH F S G V +V V + KG+GFV+Y+ A AI+ N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 159 (61.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 59/215 (27%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D +L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 183
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 184 GAKAK---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 120 (47.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 92 (37.4 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTL--SVKVMRDPSGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEIS 257
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 611 QAHHAKKEAAQKVGAVAAA 629
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 43/145 (29%), Positives = 78/145 (53%)
Query: 6 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-R 64
+N L+G+PI+VN A A + D NIF+G+L EV + L+ FS + +
Sbjct: 93 MNMIKLYGKPIRVNKASAHQKNLDVGA--NIFIGNLDVEVDEKLLYDTFSAFGVILQTPK 150
Query: 65 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 124
+M D +TG+S+ F F++F + + + +A++ + G++L +R I ++A K E + S
Sbjct: 151 IMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGE-RHGSA 209
Query: 125 AKSVVELTNGSSE-DGKETTNTEAP 148
A+ ++ N S+ D +AP
Sbjct: 210 AERLLAAQNPSTHADRPHQLFADAP 234
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 157 (60.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 59/186 (31%), Positives = 82/186 (44%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG L+ EV D L A F + +D ++ D +T + RGF FV F +DA +AI+++
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 96 TGKWLGSRQIRCNWATK---GAGNNEDKQSSD---AK-SVVELTNGSSEDGKETTNTEAP 148
L R IR N A G++ S D K S L E+G E EAP
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAEAP 127
Query: 149 E---------NNPQ-YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV--QRDKGFGF 196
E +NPQ Y + +GN Q+ L + A E R +KGFGF
Sbjct: 128 EGEPAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTA---ENFRCLCTHEKGFGF 184
Query: 197 VRYSTH 202
S H
Sbjct: 185 KGSSFH 190
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 157 (60.3 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D +L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 183
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 184 GAKAK---EFTNVYIKNFGEEVDDESLKELFSQF 214
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 92 (37.4 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 25/71 (35%), Positives = 34/71 (47%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTL--SVKVMRDPNGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGNTTQSS 218
A++ N + S
Sbjct: 247 AVEEMNGKEIS 257
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 624 QAHHAKKEAAQKVGAVAAA 642
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 156 (60.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 214 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 124 (48.7 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 183
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 184 GAKAK---EFTNVYIKNFGEEVDDENLKELFSQF 214
Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 115 (45.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 92 (37.4 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAAL 207
++T VY+ N EV +L F G + V+V RD KGFGFV Y H +A
Sbjct: 189 EFTNVYIKNFGEEVDDENLKELFSQFGKTL--SVKVMRDPSGKSKGFGFVSYEKHEDANK 246
Query: 208 AIQMGN 213
A++ N
Sbjct: 247 AVEEMN 252
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 625 QAHHAKKEAAQKVGAVAAA 643
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 61/215 (28%), Positives = 96/215 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSR 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D TGRS+GFGFV+F ++AQ A+ D+ GK + R + A K
Sbjct: 214 FGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRL-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++QS EL + +E + Q +YV NL + L + F
Sbjct: 271 --ERQS-------ELKRKFEQMKQERVSRY------QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V + KGFGFV +S+ EA A+
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 32/105 (30%), Positives = 57/105 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+P+++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGRPVRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G SRG GFV F Q+ A AI + G L R++
Sbjct: 126 LSCKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKV 168
Score = 125 (49.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D + RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + R +R W+ + G
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPG 92
Score = 53 (23.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 213
V++ NL + L+ F + G + +V + +G GFV + T A AIQ N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMN 159
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 160 (61.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 47/143 (32%), Positives = 77/143 (53%)
Query: 23 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82
+SG D S ++FVG++S +V++ T+ + FS + +++ D++TG+ +G+GF+ F
Sbjct: 8 SSGVGNDRSQR-SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
Query: 83 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 142
+ Q A+ AI +L G L R +R + A G E SS+A + VE + G E
Sbjct: 67 PDIQTAEVAIRNLNGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVE----ENPYGPEC 122
Query: 143 TNTEAPENNPQYTTVYVGNLAPE 165
+APE Q V +LAPE
Sbjct: 123 DAGKAPERISQT----VASLAPE 141
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 126 (49.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 38/132 (28%), Positives = 65/132 (49%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + R E+ +F NI++ ++ PEV D F
Sbjct: 186 AIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEK 245
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + A + D + G+SRGFGFV+F + AQ+A+ ++ K + S+++ A K
Sbjct: 246 FGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 117 NED--KQSSDAK 126
E+ KQ A+
Sbjct: 305 EEELRKQYEAAR 316
Score = 111 (44.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VG+L P VT+A L+ FS + RV D T RS G+ +V++ + + A+++
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 95 LTGKWLGSRQIRCNWATK 112
L + + R W+ +
Sbjct: 103 LNYTLIKGKPCRIMWSQR 120
Score = 111 (44.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 26/104 (25%), Positives = 51/104 (49%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + +
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNIL 157
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D+ G S+G+GFV + + A +AI + G L +++
Sbjct: 158 SCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Score = 102 (41.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 140 KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGF 194
K+ ++ E +T +Y+ N+ PEV + + F G I + RD +GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE--ITSATLSRDSEGKSRGF 265
Query: 195 GFVRYSTHAEAALAIQMGNTTQ--SSYLF-GKQMK 226
GFV +STH A A++ N + S L+ G+ K
Sbjct: 266 GFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAA 206
V++ NL + LH F + G I +V +D KG+GFV Y T AEAA
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGN--ILSCKVAQDEFGVSKGYGFVHYET-AEAA 183
Score = 52 (23.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 184 EEVRVQRDKGFGFVRYSTHAEAALAI 209
E+ + + KGFGFV +S+ EA+ A+
Sbjct: 409 EKKPLGKSKGFGFVCFSSPDEASKAV 434
Score = 42 (19.8 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
TK + N E++++++ + E+ KE + PE P
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAE--QKPEKKP 412
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 54/188 (28%), Positives = 93/188 (49%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87
E++ +FVG+LS V DA L F + + ARV+ D+++GRS+GFG+V F ++
Sbjct: 233 EESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEE 292
Query: 88 AQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT-- 145
A+ A + G ++ R+I+ +++T A N+ D + AK + + S D N
Sbjct: 293 AEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPES-DTLFVGNLPF 351
Query: 146 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEA 205
+A E++ VG EV ++ R + E R KGFG+V +++ +A
Sbjct: 352 DADEDS-------VGAFFSEVAEVKSLR--------LPTEQESGRRKGFGYVTFNSVEDA 396
Query: 206 ALAIQMGN 213
A + N
Sbjct: 397 KSAFEQLN 404
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG+L + + ++ A FS R+ +Q++GR +GFG+V+F + +DA+SA L
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 96 TGKWLGSRQIRCNWAT 111
G+ + R R +++T
Sbjct: 404 NGQSINGRNCRLDYST 419
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G LS V + +L FS + ++ R+ +D+ +GRSRGFGFV F + DA SA + +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 96 TGKWLGSRQIRCNWA 110
GK L R +R ++A
Sbjct: 103 DGKGLLGRPLRISFA 117
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 136 (52.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 37/116 (31%), Positives = 58/116 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + + D TL F
Sbjct: 154 AIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGR 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112
+ +VM D+ G+S+GFGFVSF +DAQ A++++ GK L + I A K
Sbjct: 214 FGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQK 268
Score = 122 (48.0 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 28/104 (26%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG N+F+ +L+ + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLR-RSGVGNVFIKNLNKTIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G GFV F ++ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV 168
Score = 113 (44.8 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ V+F DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK 112
+ + + +R W+ +
Sbjct: 72 MNFDVIKGKPVRIMWSQR 89
Score = 74 (31.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 134 GSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---R 190
G + KE E ++T VY+ N + L+ F G + +V +
Sbjct: 171 GQFKSRKER-EAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK 229
Query: 191 DKGFGFVRYSTHAEAALAIQMGN 213
KGFGFV + H +A A+ N
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMN 252
Score = 72 (30.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQ 210
Q +YV NL + L + F G +V + R KGFGFV +S+ EA A+
Sbjct: 292 QGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVS 351
Query: 211 MGN 213
N
Sbjct: 352 EMN 354
Score = 51 (23.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 213
V++ NL + L+ F + G + +V + KG GFV + T A AI+ N
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMN 159
Score = 42 (19.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGK 140
+KG G ++ DA+ V+ NG +GK
Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 164 (62.8 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 60/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + +VM D +GRSRGFGFV++ N ++AQ A+ ++ GK + R + A K
Sbjct: 214 FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q EL + +E N Q +YV NL + L + F
Sbjct: 271 --ERQG-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V + KGFGFV +S+ EA A+
Sbjct: 316 PYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 135 (52.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 40/133 (30%), Positives = 67/133 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS +
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V+ D+ G SRG+GFV F Q+ A AI + G L R++ + E +
Sbjct: 126 LSCKVVCDEY-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERE 180
Query: 121 QSSDAKSVVELTN 133
AK V+E TN
Sbjct: 181 LEYGAK-VMEFTN 192
Score = 129 (50.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + R IR W+ + G
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPG 92
Score = 54 (24.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGN 213
V++ NL + L+ F + G + +V +G+GFV + T A AIQ N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 137 (53.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 58/216 (26%), Positives = 87/216 (40%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V QR G + N+FV + + L A FS
Sbjct: 201 AIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSK 260
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + A VM D + G+ +GFGFV+F +Q A A+ L L C + A
Sbjct: 261 FGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTD--CKLSVCRA-Q 316
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
+ ++S++ K E + N +YV N+ ++ L HF
Sbjct: 317 KKSERSAELKRKYEALKQERVQRYQGVN------------LYVKNIEEDLNDDGLRDHFS 364
Query: 177 SLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
S G +V V R KGFGFV + EA A+
Sbjct: 365 SFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAV 400
Score = 133 (51.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 27/104 (25%), Positives = 58/104 (55%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ +G+ NIF+ +L + + +++ FS++ +
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAAR-RAGNGNIFIKNLDRVIDNKSVYDTFSLFGNIL 172
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V D + G S+G+GFV F + AQ+AI + G L +++
Sbjct: 173 SCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N++V ++ ++ D L FS + + + A+VM D+ GRS+GFGFV F ++A +A+ D
Sbjct: 344 NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTD 402
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG 139
+ K +G++ + A + S + + L G G
Sbjct: 403 MNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASG 447
Score = 117 (46.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL P+V++A LF FS+ RV D + S G+ +V+F+ DA+ A++
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 95 LTGKWLGSRQIRCNW-----ATKGAGN 116
+ + + R +R W A + AGN
Sbjct: 118 MNFEVIHGRPMRIMWSQRDPAARRAGN 144
Score = 76 (31.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 26/86 (30%), Positives = 37/86 (43%)
Query: 146 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTH 202
E E+ +YT V+V N + Q L F G + V+ + KGFGFV ++
Sbjct: 229 ELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
Query: 203 AEAALAIQMGNTTQSSYLFGKQMKCS 228
A A++ N S L G K S
Sbjct: 289 DAAGQAVEKLN---DSILEGTDCKLS 311
Score = 50 (22.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 192 KGFGFVRYSTHAEAALAIQMGN 213
KG+GFV + T A AI+ N
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVN 206
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 159 (61.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 61/215 (28%), Positives = 96/215 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y +VM D G+S+GFGFVSF +DAQ A++++ GK + + + A K
Sbjct: 214 YGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFL 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 131 (51.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 30/104 (28%), Positives = 57/104 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI+ + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168
Score = 117 (46.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + R +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAV 248
Query: 210 -QM-GNTTQSSYLF-GKQMK 226
+M G +F G+ K
Sbjct: 249 DEMNGKDMNGKSMFVGRAQK 268
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 56/217 (25%), Positives = 96/217 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG+ L G + V RE + F N+++ + ++ D L FS
Sbjct: 153 AIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSK 212
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y +VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K
Sbjct: 213 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV-- 269
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + K + E G Q +Y+ NL + L F
Sbjct: 270 --ERQA-ELKQMFEQLKRERIRGC------------QGVKLYIKNLDDTIDDEKLRNEFS 314
Query: 177 SLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 209
S G+ I V+V ++ KGFG + +S+ +A A+
Sbjct: 315 SFGS--ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 349
Score = 130 (50.8 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+ I++ W+ SG N+F+ +L + + TL+ FS +
Sbjct: 67 ALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
++VM D + G S+G+ FV F+NQ A AI ++ GK L C N +D++
Sbjct: 126 SSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDRE 179
Query: 122 SSDAKSVVELTN 133
+ E TN
Sbjct: 180 AELRSKASEFTN 191
Score = 123 (48.4 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+ LF FS R+ DQ T RS G+ +V+F DAQ A++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 95 LTGKWLGSRQIRCNWATKGA 114
+ + + IR W+ + A
Sbjct: 71 MNFDIIKGKSIRLMWSQRDA 90
Score = 79 (32.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 33/130 (25%), Positives = 53/130 (40%)
Query: 97 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG--------KETTNTEAP 148
GK L S+ + + +KG + S A +E NG G K + EA
Sbjct: 122 GKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 181
Query: 149 ENNP--QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHA 203
+ ++T VY+ N ++ L F G + +V + KGFGFV + +H
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 204 EAALAIQMGN 213
A A++ N
Sbjct: 242 AAKKAVEEMN 251
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 163 (62.4 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 65/215 (30%), Positives = 96/215 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G F NI+V +L +V + L FS
Sbjct: 154 AIRTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G SRGFGFV+F +DAQ A+ D+ GK + R + A K
Sbjct: 214 FGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQN-------ELKR-RFEQMKQDRLTRY-----QGVNLYVKNLDDSIDDEKLRKEFA 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V + KGFGFV +S+ EA A+
Sbjct: 316 PYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 143 (55.4 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + GQPI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGQPIRIMWSQRDPGLRK--SGVGNVFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D G SRGFGFV F + AQ+AI + G L R++
Sbjct: 126 LSCKVVCDDH-G-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Score = 126 (49.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAG 115
+ + + + IR W+ + G
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPG 92
Score = 62 (26.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMG 212
V++ NL + L+ F + G I +V D +GFGFV + TH A AI+
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGN--ILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 213 N 213
N
Sbjct: 159 N 159
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 159 (61.0 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 60/206 (29%), Positives = 94/206 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQT-------ELKR-KFEQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYS 200
G +V ++ R KGFGFV +S
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFS 341
Score = 130 (50.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+P+++ W+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+GFV F Q+ A+ AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 122 (48.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 34/107 (31%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + +R W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK-SIDNKALYD 117
Score = 77 (32.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 210 QMGNTTQSSYLFGKQM 225
N + L GKQ+
Sbjct: 249 DEMNGKE---LNGKQI 261
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 89
T + IFV +LSPE ++ L+ F + + ++ +V+ D T + +GFGFV+ N +A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 90 SAINDLTGKWLGSRQIRCNWAT 111
AI L G LG R ++ ++ T
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKT 353
Score = 118 (46.6 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 37/106 (34%), Positives = 56/106 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAY-ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI +LNG L + IKV++A +S D N++V L ++ + FS Y
Sbjct: 95 AINTLNGLKLQTKTIKVSYARPSSASIRDA----NLYVSGLPKTMSQKDMEQLFSQYGRI 150
Query: 61 SDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ 104
+R++ DQ T G SRG GF+ F + +A+ AI L G K LG+ +
Sbjct: 151 ITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAE 196
Score = 105 (42.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83
+G +D+ N+ V L +T + F +++ D+ TG+S G+GFV++
Sbjct: 30 NGATDDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV 87
Query: 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ DA AIN L G L ++ I+ ++A + + D
Sbjct: 88 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 123
Score = 84 (34.6 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++V NL+PE + L + F GA + V+V RD KGFGFV + + EAA+AI
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 334
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 163 (62.4 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y +VM D TG+S+GFGFVSF +DA A+ ++ GK + + + A K
Sbjct: 214 YGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 271 --ERQA-------ELKRRFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 350
Score = 123 (48.4 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +V+F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
+ + + IR W+ + G GN N DK S D K++ +
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 117
Score = 120 (47.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105
+V+ D+ G S+G+ FV F Q A AI + G L R++
Sbjct: 127 SCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKV 168
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 353 MNGRIVGSKPL 363
Score = 74 (31.1 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + KGFGFV + H +A A+
Sbjct: 189 EFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAV 248
Query: 210 QMGN 213
+ N
Sbjct: 249 EEMN 252
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 156 (60.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWATKGAGN 116
GK + RQIR + A K + N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDN 88
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 160 (61.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRN 84
Q++ + ++++GDL+ +VTD L F YPS ARV+ D TG SRG+GFV F +
Sbjct: 105 QQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFAS 164
Query: 85 QQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS 127
+ A+ D+ G ++ ++ I+ N T N++ D S
Sbjct: 165 DVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTS 207
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 133 (51.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 56/217 (25%), Positives = 96/217 (44%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG+ L G + V RE + F N+++ + ++ D L FS
Sbjct: 211 AIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSK 270
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y +VM D +G+S+GFGFVSF + + A+ A+ ++ G+ + + I A K
Sbjct: 271 YGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV-- 327
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + K + E G Q +Y+ NL + L F
Sbjct: 328 --ERQA-ELKQMFEQLKRERIRGC------------QGVKLYIKNLDDTIDDEKLRNEFS 372
Query: 177 SLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 209
S G+ I V+V ++ KGFG + +S+ +A A+
Sbjct: 373 SFGS--ISRVKVMQEEGQSKGFGLICFSSPEDATKAM 407
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+ I++ W+ SG N+F+ +L + + TL+ FS +
Sbjct: 125 ALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
++VM D + G S+G+ FV F+NQ A AI ++ GK L C N +D++
Sbjct: 184 SSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEMNGKLLKG----CKVFVGRFKNRKDRE 237
Query: 122 SSDAKSVVELTN 133
+ E TN
Sbjct: 238 AELRSKASEFTN 249
Score = 123 (48.4 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL +VT+ LF FS R+ DQ T RS G+ +V+F DAQ A++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 95 LTGKWLGSRQIRCNWATKGA 114
+ + + IR W+ + A
Sbjct: 129 MNFDIIKGKSIRLMWSQRDA 148
Score = 79 (32.9 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 33/130 (25%), Positives = 53/130 (40%)
Query: 97 GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDG--------KETTNTEAP 148
GK L S+ + + +KG + S A +E NG G K + EA
Sbjct: 180 GKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 239
Query: 149 ENNP--QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHA 203
+ ++T VY+ N ++ L F G + +V + KGFGFV + +H
Sbjct: 240 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 204 EAALAIQMGN 213
A A++ N
Sbjct: 300 AAKKAVEEMN 309
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 138 (53.6 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F+++VG++ + T+ + F+ ++ R+++D++TGR RGF FV F + AQ A+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
Query: 94 DLTGKWLGSRQIRCNWATK 112
L G R +R N+A K
Sbjct: 66 QLNGVAFNGRNLRVNYANK 84
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 138 (53.6 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 90
SG F+++VG+ + T+ L FS ++ R++ D++TGR RGF F+ F + AQ
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 91 AINDLTGKWLGSRQIRCNWATK 112
A+ + G R +R N A K
Sbjct: 62 AVEQMNGAEFNGRPLRVNLANK 83
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 157 (60.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 59/215 (27%), Positives = 97/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D +L FS
Sbjct: 56 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 115
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 116 FGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-- 172
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 173 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 217
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 218 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 252
Score = 120 (47.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 197 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 254
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 255 MNGRIVGSKPL 265
Score = 43 (20.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 530 QAHHAKKEAAQKVGAVAAA 548
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 125 (49.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 88
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ N +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDA 74
Query: 89 QSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+ AIN L G L S+ I+ ++A + +D
Sbjct: 75 ERAINTLNGLRLQSKTIKVSFARPSSETIKD 105
Score = 115 (45.5 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +LNG L + IKV++A S + T N+++ L +T + F +
Sbjct: 77 AINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHII 133
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 97
++RV+ DQ TG SRG F+ F + +A+ AI G
Sbjct: 134 NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 72 (30.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVRYSTHAEAALAI 209
+++ NL + + L + F GA VI + + KGFGFV + + EAA+AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 149 (57.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 38/109 (34%), Positives = 58/109 (53%)
Query: 5 SLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
+L+G G+ +KVN+A ++ +FVG+LS VT +L F
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
ARV++D TGRSRG+GFV + ++ + ++A+ L G L R IR N A
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 115 (45.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++ G+L V ATL + + V++++ TG+SRGF FV+ N +D I++L
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 96 TG-KWLGSRQIRCNWATKGAGNNE 118
G ++LG R ++ N+A K N E
Sbjct: 147 DGTEYLG-RALKVNFADKPKPNKE 169
Score = 79 (32.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 148 PENNPQYTT----VYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRY 199
P P Y ++VGNL+ VT L F +GA V+ + R +G+GFV Y
Sbjct: 166 PNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCY 225
Query: 200 STHAEAALAIQ 210
S+ AE A++
Sbjct: 226 SSKAEMETALE 236
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 159 (61.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 59/215 (27%), Positives = 98/215 (45%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + EV D +L FS
Sbjct: 194 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQ 253
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G+S+GFGFVS+ +DA A+ ++ GK + + I A K
Sbjct: 254 FGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-- 310
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ EL + +E + Q +Y+ NL + L + F
Sbjct: 311 --ERQA-------ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 355
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 356 PFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 390
Score = 124 (48.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 40/154 (25%), Positives = 72/154 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 108 ALDTMNFDVIKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 166
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q+ A AI + G L R++ K E +
Sbjct: 167 SCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFKSRKEREAEL 223
Query: 122 SSDAKSVVELTNGSSED-GKETTNTEAPENNPQY 154
+ AK E TN ++ G+E + E Q+
Sbjct: 224 GAKAK---EFTNVYIKNFGEEVDDESLKELFSQF 254
Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM + GRS+GFGFV F + ++A A+ +
Sbjct: 335 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 392
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 393 MNGRIVGSKPL 403
Score = 43 (20.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 281 QAQHPLKQAAMGVGSAGAS 299
QA H K+AA VG+ A+
Sbjct: 680 QAHHAKKEAAQKVGAVAAA 698
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 154 (59.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 42/114 (36%), Positives = 58/114 (50%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSV 56
A+ N + G+ + VN A G R + F I+VG+L +V L FS
Sbjct: 170 AVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
+ DARV+ D++TGRSRGFGFV N+ + AI L G+ L R I+ N A
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 155 (59.6 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSV 56
A+ N L G+ + VN A G R + + F ++VG+L +V + L FS
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
+ +ARV++D++TGRSRGFGFV+ + + AI+ L G+ L R IR N A
Sbjct: 267 HGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 152 (58.6 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+FVG LS + + +L FS Y S+ V+ D++T RSRGFGFV+F N DA+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 TGKWLGSRQIRCNWA---TKGAGNNEDKQSS 123
GK + RQIR + A +G G N + S
Sbjct: 68 NGKSVDGRQIRVDQAGGGDRGYGGNRFESRS 98
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 121 (47.7 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 39/121 (32%), Positives = 63/121 (52%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI +LNG L + IKV++A S + + N+++ L +T + FS +
Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRSMTQKDVEDMFSRFGRII 133
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQ-IRCNWATKGAGNNED 119
++RV+ DQ TG SRG F+ F + +A+ AI + G K GS + I +A A N++
Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA---ANPNQN 190
Query: 120 K 120
K
Sbjct: 191 K 191
Score = 118 (46.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 88
D G N+ V L +T L + FS A+++ D+ G S G+GFV++ +DA
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 89 QSAINDLTGKWLGSRQIRCNWA 110
+ AIN L G L S+ I+ ++A
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA 96
Score = 75 (31.5 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 143 TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA----GVIEEVRVQRDKGFGFVR 198
+ P N +++ NL + + L + F GA VI + + KGFGFV
Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 199 YSTHAEAALAI 209
+ + EAA+AI
Sbjct: 292 MTNYEEAAMAI 302
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 152 (58.6 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+F+G ++ + + +L F+ Y D RV+ D++TGRSRGFGFV+F + + A SAI L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 96 TGKWLGSRQIRCNWA---TKGAG 115
G+ L R ++ N+A T G G
Sbjct: 102 DGRDLHGRVVKVNYANDRTSGGG 124
Score = 37 (18.1 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPEN 150
+GN + SS + V NGSS G + NT N
Sbjct: 210 SGNTYGEGSSASAGAVGDYNGSS--GYGSANTYGSSN 244
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 136 (52.9 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
+ FVG L D +L FS Y D++++ D++TGRSRGFGFV+F + + + AI
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 94 DLTGKWLGSRQIRCNWA 110
+ G+ L R I N A
Sbjct: 66 AMNGQDLDGRNITVNEA 82
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 159 (61.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 60/215 (27%), Positives = 93/215 (43%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G F N+++ + ++ D L F
Sbjct: 155 AIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDK 214
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y +VM D TG+SRGFGFVS+ +DA A+ ++ G L N T G
Sbjct: 215 YGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTEL-------NGKTVFVGR 266
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
+ K A EL + +E + Q +Y+ NL + L + F
Sbjct: 267 AQKKMERQA----ELKRKFEQLKQERISRY------QGVNLYIKNLDDTIDDEKLRKEFS 316
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G+ +V ++ R KGFGFV +S+ EA A+
Sbjct: 317 PFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAV 351
Score = 122 (48.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 36/115 (31%), Positives = 60/115 (52%)
Query: 30 TSGHF---NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86
T+G + +++VGDL P++T+A L+ FS RV D T RS G+ +V+F+
Sbjct: 5 TAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 64
Query: 87 DAQSAINDLTGKWLGSRQIRCNWATK-------GAGN----NEDKQSSDAKSVVE 130
DA+ A++ + + + IR W+ + G GN N DK S D K++ +
Sbjct: 65 DAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK-SIDNKALYD 118
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L FS + S + A+VM ++ GRS+GFGFV F + ++A A+ +
Sbjct: 296 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTE 353
Query: 95 LTGKWLGSRQI 105
+ G+ +GS+ +
Sbjct: 354 MNGRIVGSKPL 364
Score = 121 (47.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 36/132 (27%), Positives = 62/132 (46%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ ++N + G+PI++ W+ SG N+F+ +L + + L+ FS + +
Sbjct: 69 ALDTMNFDVVKGKPIRIMWSQRDPSLRK-SGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 127
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V+ D+ G S+G+ FV F Q A AI + G L R++ K E +
Sbjct: 128 SCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVG-RFKSRKEREAEM 184
Query: 122 SSDAKSVVELTN 133
+ AK E TN
Sbjct: 185 GAKAK---EFTN 193
Score = 81 (33.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
++T VY+ N ++ L F G + +V + +GFGFV Y H +A A+
Sbjct: 190 EFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAV 249
Query: 210 QMGNTTQ 216
+ N T+
Sbjct: 250 EEMNGTE 256
WARNING: HSPs involving 614 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 320 295 0.00092 115 3 11 22 0.41 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 864
No. of states in DFA: 611 (65 KB)
Total size of DFA: 216 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.25u 0.08s 25.33t Elapsed: 00:00:01
Total cpu time: 25.32u 0.08s 25.40t Elapsed: 00:00:01
Start: Mon May 20 16:00:04 2013 End: Mon May 20 16:00:05 2013
WARNINGS ISSUED: 2