Query 020844
Match_columns 320
No_of_seqs 240 out of 2231
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 100.0 2.5E-39 5.3E-44 265.1 19.6 203 9-236 37-241 (321)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-35 6.3E-40 267.9 25.7 225 2-234 61-350 (352)
3 TIGR01659 sex-lethal sex-letha 100.0 9E-35 2E-39 259.6 21.5 168 28-235 102-277 (346)
4 TIGR01645 half-pint poly-U bin 100.0 4.6E-34 9.9E-39 267.7 24.4 175 31-234 105-285 (612)
5 TIGR01628 PABP-1234 polyadenyl 100.0 6.5E-34 1.4E-38 273.8 20.8 209 2-233 145-364 (562)
6 KOG0144 RNA-binding protein CU 100.0 1.2E-33 2.7E-38 245.2 13.2 188 13-237 15-210 (510)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-31 2.4E-36 244.4 21.5 163 32-234 2-172 (352)
8 TIGR01628 PABP-1234 polyadenyl 100.0 2.8E-31 6.1E-36 255.5 21.1 195 2-233 58-261 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 3.9E-31 8.4E-36 247.7 21.2 217 4-234 35-308 (578)
10 KOG0145 RNA-binding protein EL 100.0 2.5E-31 5.5E-36 216.9 17.2 224 2-233 99-358 (360)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-30 1.2E-34 241.1 25.7 194 32-233 274-480 (481)
12 TIGR01622 SF-CC1 splicing fact 100.0 4.4E-30 9.6E-35 241.7 24.9 175 30-233 86-266 (457)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6E-30 1.3E-34 244.0 24.0 217 2-231 239-500 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-29 2.6E-34 238.7 25.6 223 2-233 54-351 (481)
15 KOG0117 Heterogeneous nuclear 100.0 2.9E-30 6.4E-35 225.3 17.3 198 31-235 81-333 (506)
16 TIGR01622 SF-CC1 splicing fact 100.0 3.7E-28 8E-33 228.7 24.8 225 2-232 147-447 (457)
17 KOG0145 RNA-binding protein EL 100.0 2.5E-29 5.5E-34 205.2 14.3 165 30-234 38-210 (360)
18 KOG0131 Splicing factor 3b, su 100.0 8.4E-29 1.8E-33 192.2 12.5 168 31-237 7-181 (203)
19 KOG0124 Polypyrimidine tract-b 100.0 2.6E-28 5.7E-33 208.1 11.4 171 33-232 113-289 (544)
20 KOG0127 Nucleolar protein fibr 99.9 1.1E-26 2.5E-31 207.3 19.1 224 2-231 63-376 (678)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.9E-26 1.7E-30 215.7 22.3 188 28-233 170-375 (509)
22 TIGR01645 half-pint poly-U bin 99.9 1.9E-25 4.1E-30 209.9 23.9 113 2-114 165-285 (612)
23 KOG0109 RNA-binding protein LA 99.9 6.9E-27 1.5E-31 193.9 11.4 147 35-233 4-150 (346)
24 KOG0127 Nucleolar protein fibr 99.9 6.1E-26 1.3E-30 202.7 16.7 186 34-233 6-196 (678)
25 KOG0123 Polyadenylate-binding 99.9 1.2E-25 2.6E-30 202.0 15.7 188 2-232 53-245 (369)
26 KOG0144 RNA-binding protein CU 99.9 8.8E-25 1.9E-29 190.3 11.9 226 2-235 92-506 (510)
27 KOG0146 RNA-binding protein ET 99.9 8.2E-25 1.8E-29 179.6 9.9 214 12-234 1-366 (371)
28 KOG0147 Transcriptional coacti 99.9 1E-23 2.2E-28 189.3 14.3 222 5-231 239-526 (549)
29 KOG0110 RNA-binding protein (R 99.9 1.5E-23 3.3E-28 193.0 14.5 168 34-233 516-693 (725)
30 KOG0123 Polyadenylate-binding 99.9 6.2E-23 1.3E-27 184.5 16.2 147 35-233 3-153 (369)
31 KOG4205 RNA-binding protein mu 99.9 3E-22 6.6E-27 174.0 11.3 167 32-234 5-177 (311)
32 KOG4206 Spliceosomal protein s 99.9 8.9E-21 1.9E-25 153.4 17.7 193 31-231 7-220 (221)
33 KOG0147 Transcriptional coacti 99.9 1.6E-22 3.4E-27 181.7 6.1 180 29-235 175-360 (549)
34 KOG0105 Alternative splicing f 99.9 1.6E-20 3.4E-25 146.5 16.1 170 31-215 4-173 (241)
35 PLN03134 glycine-rich RNA-bind 99.9 5.1E-21 1.1E-25 150.5 12.2 112 4-115 5-116 (144)
36 KOG0148 Apoptosis-promoting RN 99.9 3.1E-21 6.8E-26 158.9 10.7 135 30-234 3-143 (321)
37 KOG0124 Polypyrimidine tract-b 99.8 3.3E-20 7.1E-25 158.8 15.5 114 2-115 171-292 (544)
38 TIGR01659 sex-lethal sex-letha 99.8 9.6E-21 2.1E-25 169.5 12.5 111 2-115 165-277 (346)
39 TIGR01648 hnRNP-R-Q heterogene 99.8 9E-19 1.9E-23 164.8 13.9 163 2-179 198-366 (578)
40 KOG1457 RNA binding protein (c 99.8 6.7E-18 1.4E-22 135.7 14.6 185 31-215 32-271 (284)
41 KOG4211 Splicing factor hnRNP- 99.8 6.8E-18 1.5E-22 150.2 15.5 165 31-230 8-179 (510)
42 KOG4212 RNA-binding protein hn 99.8 2.1E-17 4.5E-22 144.7 17.4 195 31-231 42-292 (608)
43 KOG1190 Polypyrimidine tract-b 99.8 4.5E-17 9.7E-22 141.6 17.8 191 33-233 297-491 (492)
44 KOG0106 Alternative splicing f 99.8 2.9E-18 6.4E-23 140.3 8.9 166 34-229 2-167 (216)
45 KOG1548 Transcription elongati 99.7 1.2E-16 2.7E-21 136.2 15.6 193 30-229 131-348 (382)
46 PF00076 RRM_1: RNA recognitio 99.7 2.5E-17 5.5E-22 113.7 9.1 70 36-106 1-70 (70)
47 KOG0125 Ataxin 2-binding prote 99.7 1.5E-17 3.3E-22 140.8 9.2 105 5-114 71-175 (376)
48 KOG0122 Translation initiation 99.7 2.6E-17 5.5E-22 134.2 9.6 82 32-113 188-269 (270)
49 KOG0149 Predicted RNA-binding 99.7 3.1E-17 6.7E-22 133.3 7.4 80 32-112 11-90 (247)
50 KOG0120 Splicing factor U2AF, 99.7 1.1E-16 2.5E-21 145.9 11.9 212 3-230 239-489 (500)
51 KOG0110 RNA-binding protein (R 99.7 2.8E-16 6.1E-21 145.5 14.2 191 30-231 382-596 (725)
52 KOG0121 Nuclear cap-binding pr 99.7 7.6E-17 1.7E-21 118.5 7.0 85 29-113 32-116 (153)
53 KOG0131 Splicing factor 3b, su 99.7 7.3E-17 1.6E-21 125.9 7.1 114 2-117 67-181 (203)
54 KOG0126 Predicted RNA-binding 99.7 6.4E-18 1.4E-22 131.6 1.1 86 31-116 33-118 (219)
55 PLN03134 glycine-rich RNA-bind 99.7 7.3E-16 1.6E-20 121.2 12.6 76 153-233 33-114 (144)
56 PF14259 RRM_6: RNA recognitio 99.7 3.3E-16 7.1E-21 108.2 9.3 70 36-106 1-70 (70)
57 COG0724 RNA-binding proteins ( 99.7 2.5E-15 5.4E-20 131.7 14.4 144 33-191 115-260 (306)
58 KOG0107 Alternative splicing f 99.6 5E-16 1.1E-20 120.5 7.9 79 32-115 9-87 (195)
59 PLN03120 nucleic acid binding 99.6 1.2E-15 2.5E-20 128.4 10.6 77 33-113 4-80 (260)
60 KOG0113 U1 small nuclear ribon 99.6 1.3E-15 2.9E-20 127.6 10.1 85 29-113 97-181 (335)
61 KOG4207 Predicted splicing fac 99.6 5.9E-16 1.3E-20 123.1 6.6 87 28-114 8-94 (256)
62 KOG0114 Predicted RNA-binding 99.6 7.6E-15 1.6E-19 104.0 9.4 83 28-113 13-95 (124)
63 KOG0109 RNA-binding protein LA 99.6 2.2E-15 4.7E-20 125.9 7.1 101 2-115 52-152 (346)
64 KOG0130 RNA-binding protein RB 99.6 4.4E-15 9.6E-20 110.2 7.5 85 31-115 70-154 (170)
65 PLN03121 nucleic acid binding 99.6 1.3E-14 2.9E-19 120.1 10.9 78 32-113 4-81 (243)
66 PLN03213 repressor of silencin 99.6 7.9E-15 1.7E-19 130.6 9.9 80 29-112 6-87 (759)
67 KOG0108 mRNA cleavage and poly 99.6 3.1E-15 6.6E-20 136.0 6.9 82 34-115 19-100 (435)
68 KOG0111 Cyclophilin-type pepti 99.6 2.2E-15 4.7E-20 121.0 4.9 85 31-115 8-92 (298)
69 KOG1190 Polypyrimidine tract-b 99.6 1.8E-13 3.9E-18 119.4 17.0 193 32-233 149-373 (492)
70 smart00362 RRM_2 RNA recogniti 99.6 2.6E-14 5.6E-19 98.4 9.3 72 35-108 1-72 (72)
71 KOG4212 RNA-binding protein hn 99.6 2.3E-13 5E-18 119.6 17.0 76 33-109 215-290 (608)
72 KOG0117 Heterogeneous nuclear 99.5 1.7E-14 3.8E-19 127.0 8.8 104 6-117 229-335 (506)
73 smart00360 RRM RNA recognition 99.5 3.5E-14 7.7E-19 97.4 8.4 71 38-108 1-71 (71)
74 PF00076 RRM_1: RNA recognitio 99.5 3.6E-14 7.9E-19 97.7 7.3 65 157-226 1-70 (70)
75 PLN03120 nucleic acid binding 99.5 1.8E-13 4E-18 115.2 11.7 73 155-233 5-80 (260)
76 KOG0107 Alternative splicing f 99.5 6.1E-14 1.3E-18 109.0 7.5 75 154-233 10-85 (195)
77 KOG0125 Ataxin 2-binding prote 99.5 8.5E-14 1.8E-18 118.3 9.0 77 152-233 94-174 (376)
78 cd00590 RRM RRM (RNA recogniti 99.5 2.6E-13 5.6E-18 93.9 9.8 74 35-109 1-74 (74)
79 KOG1365 RNA-binding protein Fu 99.5 5.4E-14 1.2E-18 121.6 7.3 212 9-230 124-359 (508)
80 KOG0121 Nuclear cap-binding pr 99.5 9.1E-14 2E-18 102.4 6.6 73 153-230 35-113 (153)
81 KOG0114 Predicted RNA-binding 99.5 3.7E-13 7.9E-18 95.5 8.7 72 154-230 18-92 (124)
82 KOG0149 Predicted RNA-binding 99.5 4.1E-13 9E-18 109.4 9.5 76 151-232 9-90 (247)
83 KOG1456 Heterogeneous nuclear 99.4 2.4E-12 5.1E-17 111.3 13.4 166 29-233 27-199 (494)
84 smart00361 RRM_1 RNA recogniti 99.4 8.5E-13 1.8E-17 90.8 7.9 61 47-107 2-69 (70)
85 KOG0122 Translation initiation 99.4 7.9E-13 1.7E-17 108.2 8.6 76 153-233 188-269 (270)
86 PF13893 RRM_5: RNA recognitio 99.4 1.3E-12 2.9E-17 85.8 8.2 56 50-110 1-56 (56)
87 PF14259 RRM_6: RNA recognitio 99.4 9.6E-13 2.1E-17 90.7 7.5 65 157-226 1-70 (70)
88 KOG1456 Heterogeneous nuclear 99.4 5.3E-11 1.1E-15 103.0 19.3 195 29-233 116-363 (494)
89 KOG4207 Predicted splicing fac 99.4 5.9E-13 1.3E-17 106.2 6.4 77 154-235 13-95 (256)
90 PLN03213 repressor of silencin 99.4 1.4E-12 3E-17 116.5 9.3 75 154-233 10-88 (759)
91 KOG4211 Splicing factor hnRNP- 99.4 1.2E-11 2.7E-16 110.7 15.2 217 6-229 68-354 (510)
92 KOG0111 Cyclophilin-type pepti 99.4 9.5E-13 2.1E-17 105.9 5.5 82 154-240 10-97 (298)
93 KOG0105 Alternative splicing f 99.3 1.9E-12 4.2E-17 101.5 6.8 75 154-233 6-83 (241)
94 PLN03121 nucleic acid binding 99.3 5.2E-12 1.1E-16 104.8 9.7 72 154-231 5-79 (243)
95 smart00362 RRM_2 RNA recogniti 99.3 6.7E-12 1.5E-16 86.2 8.8 68 156-228 1-72 (72)
96 PF13893 RRM_5: RNA recognitio 99.3 6.6E-12 1.4E-16 82.4 8.2 55 171-230 1-56 (56)
97 KOG0129 Predicted RNA-binding 99.3 5.1E-11 1.1E-15 107.5 15.7 161 29-211 255-432 (520)
98 KOG0146 RNA-binding protein ET 99.3 2.8E-12 6E-17 106.2 5.7 87 29-115 281-367 (371)
99 KOG4208 Nucleolar RNA-binding 99.3 9.6E-12 2.1E-16 99.6 8.5 86 28-113 44-130 (214)
100 KOG0120 Splicing factor U2AF, 99.3 6.9E-12 1.5E-16 114.9 8.6 180 30-233 172-369 (500)
101 KOG0113 U1 small nuclear ribon 99.3 1.9E-11 4.1E-16 102.9 9.4 76 152-232 99-180 (335)
102 KOG0112 Large RNA-binding prot 99.3 9.3E-12 2E-16 118.5 6.8 164 28-234 367-532 (975)
103 KOG0226 RNA-binding proteins [ 99.2 1E-11 2.2E-16 102.3 6.0 106 7-112 161-269 (290)
104 KOG0130 RNA-binding protein RB 99.2 2.6E-11 5.6E-16 90.3 7.5 83 148-235 66-154 (170)
105 KOG0128 RNA-binding protein SA 99.2 9.6E-13 2.1E-17 124.6 -0.3 171 6-233 633-815 (881)
106 KOG0415 Predicted peptidyl pro 99.2 1.2E-11 2.7E-16 106.2 6.0 82 31-112 237-318 (479)
107 cd00590 RRM RRM (RNA recogniti 99.2 7.8E-11 1.7E-15 81.2 9.0 69 156-229 1-74 (74)
108 KOG0153 Predicted RNA-binding 99.2 5.8E-11 1.2E-15 102.0 9.2 84 146-233 220-303 (377)
109 KOG4205 RNA-binding protein mu 99.2 2.9E-11 6.3E-16 105.7 7.5 109 9-118 70-181 (311)
110 KOG4206 Spliceosomal protein s 99.2 5.6E-11 1.2E-15 96.8 8.2 77 154-235 9-92 (221)
111 KOG0132 RNA polymerase II C-te 99.2 3.9E-11 8.5E-16 112.6 7.9 80 31-116 419-498 (894)
112 KOG4454 RNA binding protein (R 99.2 3E-12 6.5E-17 103.1 0.5 134 30-215 6-148 (267)
113 smart00360 RRM RNA recognition 99.2 1.6E-10 3.4E-15 78.9 7.9 65 159-228 1-71 (71)
114 KOG0153 Predicted RNA-binding 99.2 1.7E-10 3.7E-15 99.2 9.1 79 28-112 223-302 (377)
115 KOG0108 mRNA cleavage and poly 99.1 1.4E-10 3E-15 105.8 7.9 73 155-232 19-97 (435)
116 KOG0126 Predicted RNA-binding 99.1 7.2E-12 1.6E-16 98.1 -0.4 71 155-230 36-112 (219)
117 KOG0132 RNA polymerase II C-te 99.1 2.1E-10 4.5E-15 107.9 8.4 77 154-235 421-497 (894)
118 COG0724 RNA-binding proteins ( 99.1 4.2E-10 9.1E-15 98.4 9.4 73 154-231 115-193 (306)
119 KOG4660 Protein Mei2, essentia 99.1 1.3E-10 2.7E-15 105.9 4.9 180 28-232 70-249 (549)
120 PF04059 RRM_2: RNA recognitio 99.1 1.2E-09 2.6E-14 78.8 8.7 79 34-112 2-86 (97)
121 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.8E-10 1E-14 102.0 7.7 83 30-112 402-484 (940)
122 KOG0533 RRM motif-containing p 99.0 2.8E-09 6.1E-14 89.7 8.6 87 29-116 79-165 (243)
123 smart00361 RRM_1 RNA recogniti 98.9 3.9E-09 8.5E-14 72.5 7.0 56 168-228 2-70 (70)
124 KOG0226 RNA-binding proteins [ 98.9 2E-09 4.2E-14 89.0 5.2 165 33-230 96-267 (290)
125 KOG4210 Nuclear localization s 98.9 3.8E-09 8.3E-14 92.1 6.3 172 32-233 87-264 (285)
126 KOG1457 RNA binding protein (c 98.8 2E-08 4.3E-13 81.5 9.4 79 154-237 34-122 (284)
127 KOG4209 Splicing factor RNPS1, 98.8 8E-09 1.7E-13 87.2 6.3 85 28-113 96-180 (231)
128 KOG4307 RNA binding protein RB 98.8 3.1E-08 6.7E-13 92.4 9.9 193 29-229 307-510 (944)
129 KOG0116 RasGAP SH3 binding pro 98.8 1.9E-08 4.2E-13 91.4 7.7 80 32-112 287-366 (419)
130 KOG4208 Nucleolar RNA-binding 98.8 3.3E-08 7.1E-13 79.6 7.8 77 153-233 48-130 (214)
131 KOG0151 Predicted splicing reg 98.8 5.1E-08 1.1E-12 91.3 10.0 82 148-234 168-258 (877)
132 KOG1365 RNA-binding protein Fu 98.7 2E-07 4.4E-12 81.4 12.3 176 29-228 56-238 (508)
133 KOG0415 Predicted peptidyl pro 98.7 1.9E-08 4.1E-13 86.9 5.8 78 150-232 235-318 (479)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.2E-07 2.6E-12 86.7 10.5 76 153-233 404-485 (940)
135 KOG4660 Protein Mei2, essentia 98.7 1.7E-08 3.7E-13 92.2 4.1 75 149-228 70-145 (549)
136 KOG0106 Alternative splicing f 98.6 3E-08 6.5E-13 81.8 4.5 101 2-110 51-168 (216)
137 KOG0151 Predicted splicing reg 98.6 1.1E-07 2.3E-12 89.1 8.1 85 30-114 171-258 (877)
138 KOG1548 Transcription elongati 98.6 4.6E-07 1E-11 78.3 10.6 110 2-115 199-354 (382)
139 KOG2193 IGF-II mRNA-binding pr 98.5 7.4E-09 1.6E-13 91.3 -1.6 149 35-231 3-155 (584)
140 KOG4676 Splicing factor, argin 98.5 1.4E-07 3E-12 82.7 5.5 178 34-215 8-211 (479)
141 PF11608 Limkain-b1: Limkain b 98.4 2E-06 4.3E-11 59.3 8.2 71 155-233 3-77 (90)
142 KOG0533 RRM motif-containing p 98.4 1.9E-06 4.1E-11 72.8 8.3 75 154-233 83-162 (243)
143 KOG0116 RasGAP SH3 binding pro 98.3 3.3E-06 7.3E-11 77.0 9.7 73 154-232 288-366 (419)
144 PF11608 Limkain-b1: Limkain b 98.3 2.4E-06 5.2E-11 58.9 6.3 71 34-114 3-78 (90)
145 PF04059 RRM_2: RNA recognitio 98.1 1.9E-05 4.1E-10 57.1 8.3 76 155-233 2-87 (97)
146 KOG4454 RNA binding protein (R 98.1 1.1E-06 2.4E-11 71.3 2.0 72 155-231 10-85 (267)
147 KOG1995 Conserved Zn-finger pr 98.1 3.1E-06 6.8E-11 73.8 4.6 86 30-115 63-156 (351)
148 KOG4209 Splicing factor RNPS1, 98.1 5.8E-06 1.3E-10 70.0 6.0 75 154-234 101-181 (231)
149 KOG4210 Nuclear localization s 98.1 3.2E-06 6.8E-11 74.0 3.8 84 31-115 182-266 (285)
150 PF08777 RRM_3: RNA binding mo 98.0 1.3E-05 2.8E-10 59.3 6.1 57 155-213 2-58 (105)
151 KOG4307 RNA binding protein RB 98.0 2.1E-05 4.6E-10 74.0 7.8 76 33-109 867-943 (944)
152 COG5175 MOT2 Transcriptional r 97.9 2.8E-05 6.1E-10 67.2 7.1 80 33-112 114-202 (480)
153 PF08777 RRM_3: RNA binding mo 97.9 5.3E-05 1.1E-09 56.1 7.0 70 34-109 2-76 (105)
154 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.9E-05 6.3E-10 49.7 4.8 52 34-92 2-53 (53)
155 KOG4849 mRNA cleavage factor I 97.9 1.5E-05 3.2E-10 69.2 4.2 79 32-110 79-159 (498)
156 KOG4849 mRNA cleavage factor I 97.9 5.2E-05 1.1E-09 65.9 7.3 70 155-227 81-156 (498)
157 KOG0128 RNA-binding protein SA 97.8 2.5E-05 5.4E-10 75.3 5.0 79 33-112 736-814 (881)
158 COG5175 MOT2 Transcriptional r 97.8 0.00011 2.5E-09 63.6 8.2 74 155-233 115-203 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.6E-05 2.1E-09 47.3 5.4 52 155-209 2-53 (53)
160 KOG0115 RNA-binding protein p5 97.6 0.0001 2.3E-09 61.6 5.8 98 2-110 10-111 (275)
161 KOG1855 Predicted RNA-binding 97.6 7.5E-05 1.6E-09 66.7 4.6 78 30-107 228-318 (484)
162 KOG2314 Translation initiation 97.6 0.00034 7.3E-09 64.7 8.3 79 31-110 56-141 (698)
163 KOG3152 TBP-binding protein, a 97.5 6.7E-05 1.4E-09 62.7 3.3 74 32-105 73-158 (278)
164 KOG1855 Predicted RNA-binding 97.5 0.00024 5.3E-09 63.5 6.4 62 152-215 229-309 (484)
165 KOG1995 Conserved Zn-finger pr 97.4 0.00023 5E-09 62.4 4.7 80 151-235 63-156 (351)
166 KOG2202 U2 snRNP splicing fact 97.4 8.2E-05 1.8E-09 62.3 1.7 63 48-111 83-146 (260)
167 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0013 2.8E-08 47.9 7.6 78 32-111 5-90 (100)
168 KOG1996 mRNA splicing factor [ 97.3 0.00061 1.3E-08 58.1 6.7 65 47-111 300-365 (378)
169 KOG0115 RNA-binding protein p5 97.3 0.00059 1.3E-08 57.1 6.2 84 87-214 6-94 (275)
170 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0015 3.3E-08 47.6 7.4 69 155-230 7-89 (100)
171 KOG0129 Predicted RNA-binding 97.2 0.00082 1.8E-08 61.7 6.6 65 30-94 367-432 (520)
172 KOG0112 Large RNA-binding prot 97.2 0.00061 1.3E-08 66.4 5.9 103 3-116 430-534 (975)
173 KOG2416 Acinus (induces apopto 97.1 0.00052 1.1E-08 63.9 4.2 88 144-232 434-521 (718)
174 PF08675 RNA_bind: RNA binding 97.1 0.0034 7.4E-08 43.5 7.0 54 35-96 10-63 (87)
175 KOG2202 U2 snRNP splicing fact 97.0 0.00043 9.4E-09 58.0 2.0 59 169-232 83-147 (260)
176 KOG3152 TBP-binding protein, a 96.9 0.0006 1.3E-08 57.1 2.5 67 153-224 73-157 (278)
177 PF07576 BRAP2: BRCA1-associat 96.9 0.011 2.5E-07 43.9 9.1 67 33-101 12-80 (110)
178 KOG2416 Acinus (induces apopto 96.9 0.0012 2.5E-08 61.6 4.3 78 30-113 441-522 (718)
179 PF08952 DUF1866: Domain of un 96.9 0.005 1.1E-07 47.7 7.0 73 32-113 26-107 (146)
180 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0022 4.8E-08 52.1 4.6 82 31-112 5-97 (176)
181 PF10309 DUF2414: Protein of u 96.7 0.01 2.2E-07 39.0 6.3 53 34-95 6-62 (62)
182 PF08952 DUF1866: Domain of un 96.6 0.014 3E-07 45.3 7.6 56 169-232 51-106 (146)
183 PF10309 DUF2414: Protein of u 96.5 0.016 3.4E-07 38.1 6.5 53 155-212 6-62 (62)
184 KOG1996 mRNA splicing factor [ 96.4 0.0097 2.1E-07 51.0 6.3 58 168-230 300-364 (378)
185 KOG4676 Splicing factor, argin 96.2 0.005 1.1E-07 54.7 3.8 69 155-229 8-85 (479)
186 PF15023 DUF4523: Protein of u 96.1 0.039 8.5E-07 42.3 7.7 73 152-231 84-160 (166)
187 PF15023 DUF4523: Protein of u 96.1 0.019 4.2E-07 44.0 6.0 75 30-112 83-161 (166)
188 PF08675 RNA_bind: RNA binding 96.0 0.027 5.9E-07 39.1 5.8 55 155-214 10-64 (87)
189 PF04847 Calcipressin: Calcipr 96.0 0.022 4.8E-07 46.5 6.3 62 167-233 8-71 (184)
190 KOG2135 Proteins containing th 95.9 0.012 2.7E-07 53.6 4.9 75 154-234 372-447 (526)
191 KOG2314 Translation initiation 95.9 0.026 5.5E-07 52.7 7.0 70 155-229 59-140 (698)
192 KOG2193 IGF-II mRNA-binding pr 95.8 0.0078 1.7E-07 54.1 3.3 75 155-233 2-76 (584)
193 KOG2068 MOT2 transcription fac 95.8 0.004 8.6E-08 54.5 1.4 80 33-113 77-163 (327)
194 KOG2591 c-Mpl binding protein, 95.7 0.025 5.5E-07 52.6 6.2 70 32-108 174-247 (684)
195 KOG0804 Cytoplasmic Zn-finger 95.5 0.062 1.3E-06 48.9 7.8 69 31-101 72-141 (493)
196 KOG2591 c-Mpl binding protein, 95.5 0.036 7.9E-07 51.6 6.5 72 155-228 176-247 (684)
197 PF11767 SET_assoc: Histone ly 95.3 0.11 2.4E-06 34.7 6.6 55 44-107 11-65 (66)
198 KOG2135 Proteins containing th 95.1 0.012 2.7E-07 53.6 2.0 78 30-114 369-447 (526)
199 PF04847 Calcipressin: Calcipr 94.8 0.094 2E-06 42.9 6.3 62 46-113 8-71 (184)
200 PF07576 BRAP2: BRCA1-associat 94.8 0.62 1.3E-05 34.7 10.0 64 155-222 14-81 (110)
201 KOG4574 RNA-binding protein (c 94.6 0.025 5.5E-07 55.2 2.9 75 35-115 300-376 (1007)
202 PF10567 Nab6_mRNP_bdg: RNA-re 94.5 2.6 5.7E-05 36.6 14.3 176 29-214 11-213 (309)
203 KOG2068 MOT2 transcription fac 94.1 0.02 4.4E-07 50.2 0.9 74 155-233 78-163 (327)
204 KOG2253 U1 snRNP complex, subu 94.0 0.029 6.2E-07 53.4 1.7 70 31-109 38-107 (668)
205 KOG4285 Mitotic phosphoprotein 93.6 0.29 6.2E-06 42.5 6.9 75 32-114 196-271 (350)
206 KOG2253 U1 snRNP complex, subu 93.5 0.069 1.5E-06 50.9 3.3 74 148-229 34-107 (668)
207 KOG4285 Mitotic phosphoprotein 93.3 0.18 3.9E-06 43.7 5.2 70 155-231 198-268 (350)
208 PF03467 Smg4_UPF3: Smg-4/UPF3 93.2 0.14 3E-06 41.7 4.3 73 155-232 8-97 (176)
209 KOG4574 RNA-binding protein (c 92.5 0.095 2.1E-06 51.4 2.8 76 155-233 299-374 (1007)
210 KOG4019 Calcineurin-mediated s 92.2 0.25 5.4E-06 39.6 4.3 79 155-238 11-95 (193)
211 PF03880 DbpA: DbpA RNA bindin 92.1 0.66 1.4E-05 31.8 6.0 58 44-110 12-74 (74)
212 KOG0804 Cytoplasmic Zn-finger 91.3 1.5 3.4E-05 40.2 8.8 65 154-222 74-142 (493)
213 PF03880 DbpA: DbpA RNA bindin 91.2 2 4.4E-05 29.3 7.6 60 165-230 12-74 (74)
214 PF07292 NID: Nmi/IFP 35 domai 91.1 0.3 6.5E-06 34.6 3.4 73 78-176 1-74 (88)
215 PF11767 SET_assoc: Histone ly 90.5 1.9 4.1E-05 28.8 6.6 55 165-227 11-65 (66)
216 KOG2318 Uncharacterized conser 88.6 2.2 4.9E-05 40.4 7.8 81 30-110 171-305 (650)
217 KOG4410 5-formyltetrahydrofola 88.5 5.1 0.00011 34.7 9.3 49 153-202 329-377 (396)
218 KOG2318 Uncharacterized conser 78.4 12 0.00027 35.7 8.1 79 149-230 169-305 (650)
219 PF14111 DUF4283: Domain of un 77.9 2 4.4E-05 33.7 2.7 83 76-190 56-139 (153)
220 PF03468 XS: XS domain; Inter 76.2 3.4 7.3E-05 31.1 3.3 55 35-92 10-74 (116)
221 KOG4483 Uncharacterized conser 73.1 8.4 0.00018 35.0 5.4 55 32-93 390-445 (528)
222 KOG4019 Calcineurin-mediated s 68.2 13 0.00029 30.0 5.0 76 34-115 11-92 (193)
223 KOG2891 Surface glycoprotein [ 66.5 4.1 8.8E-05 35.1 2.0 68 33-100 149-247 (445)
224 KOG2891 Surface glycoprotein [ 64.7 4.3 9.4E-05 34.9 1.8 33 155-189 150-194 (445)
225 COG5193 LHP1 La protein, small 63.0 3.7 8E-05 37.3 1.1 62 32-93 173-244 (438)
226 PRK11901 hypothetical protein; 62.9 27 0.00058 31.2 6.4 63 30-97 242-306 (327)
227 PF07292 NID: Nmi/IFP 35 domai 62.0 4.6 9.9E-05 28.7 1.2 25 30-54 49-73 (88)
228 PF15513 DUF4651: Domain of un 61.9 17 0.00037 23.8 3.7 19 48-66 9-27 (62)
229 PF03468 XS: XS domain; Inter 57.6 14 0.0003 27.8 3.3 54 156-209 10-74 (116)
230 PF07530 PRE_C2HC: Associated 57.6 22 0.00048 23.8 3.9 63 48-113 2-65 (68)
231 KOG2295 C2H2 Zn-finger protein 56.7 1.6 3.4E-05 41.3 -2.3 71 32-102 230-300 (648)
232 KOG4410 5-formyltetrahydrofola 55.4 21 0.00046 31.0 4.3 49 33-86 330-378 (396)
233 PF10567 Nab6_mRNP_bdg: RNA-re 55.2 21 0.00045 31.3 4.3 76 153-231 14-106 (309)
234 smart00596 PRE_C2HC PRE_C2HC d 54.1 22 0.00049 23.8 3.4 63 48-113 2-65 (69)
235 KOG4365 Uncharacterized conser 52.5 2.3 4.9E-05 39.0 -2.0 77 33-110 3-79 (572)
236 KOG4213 RNA-binding protein La 50.2 23 0.00051 28.6 3.5 59 31-94 109-169 (205)
237 KOG1295 Nonsense-mediated deca 49.3 22 0.00048 32.3 3.7 68 33-100 7-77 (376)
238 KOG4008 rRNA processing protei 48.6 14 0.0003 31.3 2.1 35 29-63 36-70 (261)
239 KOG4483 Uncharacterized conser 47.7 40 0.00087 30.9 5.0 56 154-211 391-446 (528)
240 PF14893 PNMA: PNMA 46.1 15 0.00033 33.0 2.3 55 30-87 15-74 (331)
241 TIGR03636 L23_arch archaeal ri 44.5 71 0.0015 22.0 4.8 54 157-211 16-73 (77)
242 KOG3424 40S ribosomal protein 44.1 59 0.0013 24.4 4.6 48 43-91 33-85 (132)
243 PRK01178 rps24e 30S ribosomal 42.2 63 0.0014 23.5 4.5 47 44-91 30-81 (99)
244 PF02714 DUF221: Domain of unk 41.9 51 0.0011 29.5 5.0 20 78-97 1-20 (325)
245 PRK14548 50S ribosomal protein 41.0 73 0.0016 22.4 4.5 54 157-211 23-80 (84)
246 PF02714 DUF221: Domain of unk 40.8 34 0.00073 30.6 3.7 34 195-233 1-34 (325)
247 PF14893 PNMA: PNMA 39.3 30 0.00066 31.2 3.0 70 155-230 19-94 (331)
248 PF08544 GHMP_kinases_C: GHMP 37.1 1.3E+02 0.0029 20.3 5.8 42 169-213 37-80 (85)
249 PF03439 Spt5-NGN: Early trans 35.5 83 0.0018 21.9 4.2 35 181-215 32-67 (84)
250 COG5638 Uncharacterized conser 31.6 1.5E+02 0.0031 27.5 6.0 73 30-102 143-285 (622)
251 PTZ00071 40S ribosomal protein 31.5 2.4E+02 0.0053 21.7 6.8 47 44-91 35-87 (132)
252 PF03439 Spt5-NGN: Early trans 31.4 56 0.0012 22.8 2.8 25 74-98 43-67 (84)
253 PRK10905 cell division protein 30.2 91 0.002 27.8 4.4 61 31-96 245-307 (328)
254 COG0018 ArgS Arginyl-tRNA synt 28.0 4.6E+02 0.01 25.8 9.2 103 40-191 53-165 (577)
255 PF09707 Cas_Cas2CT1978: CRISP 27.6 1.5E+02 0.0032 21.0 4.3 49 31-82 23-71 (86)
256 KOG1295 Nonsense-mediated deca 26.8 72 0.0016 29.1 3.3 60 155-215 8-75 (376)
257 PF11411 DNA_ligase_IV: DNA li 26.3 52 0.0011 19.0 1.5 16 164-179 19-34 (36)
258 KOG4008 rRNA processing protei 24.9 57 0.0012 27.7 2.1 25 155-179 41-65 (261)
259 PRK10629 EnvZ/OmpR regulon mod 24.0 3.3E+02 0.0072 20.8 6.5 69 156-230 37-108 (127)
260 PF08734 GYD: GYD domain; Int 23.7 2.7E+02 0.0059 19.7 6.2 47 168-215 22-70 (91)
261 TIGR00110 ilvD dihydroxy-acid 23.1 4.7E+02 0.01 25.4 8.1 45 72-119 380-424 (535)
262 PF05189 RTC_insert: RNA 3'-te 21.4 1.7E+02 0.0036 21.2 3.9 46 35-82 12-64 (103)
263 PRK09631 DNA topoisomerase IV 21.1 5.1E+02 0.011 25.9 8.1 60 33-96 220-283 (635)
264 PF07711 RabGGT_insert: Rab ge 21.1 80 0.0017 22.9 2.0 32 10-45 33-64 (102)
265 PF00521 DNA_topoisoIV: DNA gy 20.8 1.8E+02 0.0038 27.4 4.9 59 34-96 217-279 (426)
266 KOG2295 C2H2 Zn-finger protein 20.8 20 0.00044 34.1 -1.3 60 154-215 231-296 (648)
267 TIGR02542 B_forsyth_147 Bacter 20.7 1.1E+02 0.0024 22.8 2.7 46 41-86 82-130 (145)
268 cd00187 TOP4c DNA Topoisomeras 20.6 4.3E+02 0.0093 25.1 7.3 61 33-95 225-289 (445)
269 PF11823 DUF3343: Protein of u 20.6 1.4E+02 0.0031 20.0 3.2 27 77-103 3-29 (73)
270 PF00403 HMA: Heavy-metal-asso 20.6 2.3E+02 0.0051 17.8 7.0 54 156-211 1-58 (62)
271 COG0030 KsgA Dimethyladenosine 20.4 2E+02 0.0043 25.0 4.7 32 34-65 96-127 (259)
272 PF12829 Mhr1: Transcriptional 20.3 2E+02 0.0043 20.6 3.9 52 161-213 19-72 (91)
273 PF13689 DUF4154: Domain of un 20.2 1.5E+02 0.0033 22.9 3.7 48 2-56 41-88 (145)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-39 Score=265.12 Aligned_cols=203 Identities=42% Similarity=0.783 Sum_probs=174.3
Q ss_pred cccCCCceEEEecccCCCCcC--CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHH
Q 020844 9 RHLFGQPIKVNWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86 (320)
Q Consensus 9 ~~~~g~~i~v~~~~~~~~~~~--~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 86 (320)
+.|.. .++|.|+.....+.. .+....|||+.|..+++-++||+.|.+||+|.+++|++|.+|+++|||+||.|.+.+
T Consensus 37 k~i~~-e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 37 KVIFD-ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred eeehh-hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 34443 789999987654433 334678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccC
Q 020844 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 166 (320)
Q Consensus 87 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 166 (320)
+|++||+.|||+.|.+|.|+-.|+.++....... ........+ ...+.+++|||||++..+
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~----~ltfdeV~N---------------Qssp~NtsVY~G~I~~~l 176 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGK----PLTFDEVYN---------------QSSPDNTSVYVGNIASGL 176 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCccccCCC----CccHHHHhc---------------cCCCCCceEEeCCcCccc
Confidence 9999999999999999999999999987322221 122222222 234556999999999999
Q ss_pred cHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCCC
Q 020844 167 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPP 236 (320)
Q Consensus 167 t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~~ 236 (320)
+|++|++.|++|| .|.+|++.+++||+||.|++.|+|..|+..+|+. ++.|..++|.|.+.....
T Consensus 177 te~~mr~~Fs~fG--~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNnt---ei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 177 TEDLMRQTFSPFG--PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNT---EIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cHHHHHHhcccCC--cceEEEEecccceEEEEecchhhHHHHHHHhcCc---eeCceEEEEeccccCCCC
Confidence 9999999999999 9999999999999999999999999999999999 999999999999876543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.9e-35 Score=267.93 Aligned_cols=225 Identities=28% Similarity=0.418 Sum_probs=173.3
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||+.|||..|.|++|+|.|+++.. .....++|||+|||.++++++|+++|+.||.|..++++.++.++.++|||||+
T Consensus 61 Ai~~l~g~~l~g~~i~v~~a~~~~---~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~ 137 (352)
T TIGR01661 61 AVNSLNGLRLQNKTIKVSYARPSS---DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIR 137 (352)
T ss_pred HHhhcccEEECCeeEEEEeecccc---cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEE
Confidence 789999999999999999987654 23346789999999999999999999999999999999998889999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCC--eeEEEEeccCCCCCCCcccCC-------cccccccc---------------------
Q 020844 82 FRNQQDAQSAINDLTGKWLGS--RQIRCNWATKGAGNNEDKQSS-------DAKSVVEL--------------------- 131 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~~~~~~~~~-------~~~~~~~~--------------------- 131 (320)
|.+.++|+.|++.|||..+.| ++|.|.++..+.......... ........
T Consensus 138 f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T TIGR01661 138 FDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRP 217 (352)
T ss_pred ECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCccccccc
Confidence 999999999999999998876 678898886544211100000 00000000
Q ss_pred CC-----------------------CC-CCCCCCC-----CCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCcc
Q 020844 132 TN-----------------------GS-SEDGKET-----TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 182 (320)
Q Consensus 132 ~~-----------------------~~-~~~~~~~-----~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~ 182 (320)
.. .. ....... .....+.......+|||+|||.++++++|+++|++|| .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~ 295 (352)
T TIGR01661 218 SAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--A 295 (352)
T ss_pred CcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--C
Confidence 00 00 0000000 0000111122345799999999999999999999999 9
Q ss_pred EEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 183 IEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 183 i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
|+++++.++ +|||||+|.+.++|.+|+..|||. .++|+.|+|.|+..+.
T Consensus 296 v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~---~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 296 VQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGY---TLGNRVLQVSFKTNKA 350 (352)
T ss_pred eEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEEccCCC
Confidence 999999865 799999999999999999999999 9999999999987653
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9e-35 Score=259.61 Aligned_cols=168 Identities=29% Similarity=0.463 Sum_probs=150.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
......++|||+|||+++||++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE
Q 020844 108 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187 (320)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~ 187 (320)
.++.+.... ...++|||+|||.++++++|+++|++|| .|+.++
T Consensus 182 ~~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~ 224 (346)
T TIGR01659 182 SYARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKN 224 (346)
T ss_pred ecccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEE
Confidence 987642210 0115799999999999999999999999 999999
Q ss_pred eeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEecCCCCC
Q 020844 188 VQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPTP 235 (320)
Q Consensus 188 ~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a~~~~~ 235 (320)
+.++ +|+|||+|.+.++|.+|++.||+. .+.+ ++|+|.|+.....
T Consensus 225 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 225 ILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV---IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCcccc
Confidence 8866 589999999999999999999999 7765 7899999876543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.6e-34 Score=267.72 Aligned_cols=175 Identities=24% Similarity=0.485 Sum_probs=150.0
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
...++|||+|||++++|++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||..+.||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC
Q 020844 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~ 190 (320)
......... . ..........++|||+||++++++++|+++|+.|| .|.++++.+
T Consensus 185 ~~~p~a~~~---------~---------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~ 238 (612)
T TIGR01645 185 SNMPQAQPI---------I---------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLAR 238 (612)
T ss_pred ccccccccc---------c---------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEe
Confidence 322110000 0 00001112347899999999999999999999999 999999876
Q ss_pred C------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 191 D------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 191 ~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
+ +|||||+|.+.++|.+|++.||+. .++|+.|+|.++..+.
T Consensus 239 D~~tgksKGfGFVeFe~~e~A~kAI~amNg~---elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 239 APTGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVTPP 285 (612)
T ss_pred cCCCCCcCCeEEEEECCHHHHHHHHHHhCCC---eeCCeEEEEEecCCCc
Confidence 4 799999999999999999999999 9999999999987543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.5e-34 Score=273.77 Aligned_cols=209 Identities=31% Similarity=0.457 Sum_probs=174.0
Q ss_pred hhccccCcccCCCceEEEecccCCCCc--CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 79 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~--~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~af 79 (320)
||+.|||..+.|++|.|.+...+..+. .....++|||+|||.++|+++|+++|+.||.|.++.++++. +|.++||||
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~af 223 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAF 223 (562)
T ss_pred HHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEE
Confidence 789999999999999998887666553 44556789999999999999999999999999999999995 799999999
Q ss_pred EEecCHHHHHHHHHHhCCCeeC----CeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcce
Q 020844 80 VSFRNQQDAQSAINDLTGKWLG----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155 (320)
Q Consensus 80 V~f~~~~~A~~A~~~l~~~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
|+|.+.++|.+|++.|++..+. |+.+.|.++..+.......... ..... .........+
T Consensus 224 V~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~----~~~~~-------------~~~~~~~~~~ 286 (562)
T TIGR01628 224 VNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRK----FEELQ-------------QERKMKAQGV 286 (562)
T ss_pred EEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhh----HHhhh-------------hhhhcccCCC
Confidence 9999999999999999999999 9999999876654321100000 00000 0001122336
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
+|||+||+.++++++|+++|++|| .|+++++.++ +|+|||+|.+.++|.+|+..||+. .++|+.|.|.|+
T Consensus 287 ~l~V~nl~~~~~~~~L~~~F~~~G--~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~---~~~gk~l~V~~a 361 (562)
T TIGR01628 287 NLYVKNLDDTVTDEKLRELFSECG--EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR---MLGGKPLYVALA 361 (562)
T ss_pred EEEEeCCCCccCHHHHHHHHHhcC--CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC---eeCCceeEEEec
Confidence 799999999999999999999999 9999998755 699999999999999999999999 999999999998
Q ss_pred CCC
Q 020844 231 SKP 233 (320)
Q Consensus 231 ~~~ 233 (320)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 764
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=245.22 Aligned_cols=188 Identities=23% Similarity=0.389 Sum_probs=159.5
Q ss_pred CCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHH
Q 020844 13 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92 (320)
Q Consensus 13 g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~ 92 (320)
|.+++-..+....+ ..+.+.-++||+.||..++|.|||++|++||.|.+|.|++||.|+.++|||||.|.+.++|.+|+
T Consensus 15 gs~~~~~~~~~~~d-~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~ 93 (510)
T KOG0144|consen 15 GSSLADNGSLDHTD-NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAI 93 (510)
T ss_pred CcchhhcCCCCCCC-CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHH
Confidence 44444443333322 33456779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCe-eC--CeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHH
Q 020844 93 NDLTGKW-LG--SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQL 169 (320)
Q Consensus 93 ~~l~~~~-~~--g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 169 (320)
..||+.. +. ..+|.|++++...+....+ ++|||+-|++.++|.
T Consensus 94 ~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e----------------------------------~KLFvg~lsK~~te~ 139 (510)
T KOG0144|consen 94 NALHNQKTLPGMHHPVQVKYADGERERIVEE----------------------------------RKLFVGMLSKQCTEN 139 (510)
T ss_pred HHhhcccccCCCCcceeecccchhhhccccc----------------------------------hhhhhhhccccccHH
Confidence 9998864 43 4689999988765443222 679999999999999
Q ss_pred HHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCCCC
Q 020844 170 DLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPG 237 (320)
Q Consensus 170 ~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~~~ 237 (320)
|++++|++|| .|++|.|.|+ |||+||.|.+.|.|..|++.||+..+.+-...+|.|+|+..+.++.
T Consensus 140 evr~iFs~fG--~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 140 EVREIFSRFG--HIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHhhC--ccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 9999999999 9999999997 8999999999999999999999997555566899999998776544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.1e-31 Score=244.42 Aligned_cols=163 Identities=28% Similarity=0.489 Sum_probs=146.1
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
+.++|||+|||.++||++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC
Q 020844 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~ 191 (320)
+..... ..++|||+|||.++++++|+++|++|| .|..+++.++
T Consensus 82 ~~~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~ 124 (352)
T TIGR01661 82 PSSDSI-----------------------------------KGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSD 124 (352)
T ss_pred cccccc-----------------------------------ccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEec
Confidence 532110 115799999999999999999999999 8888888653
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEecCCCC
Q 020844 192 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPT 234 (320)
Q Consensus 192 ------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a~~~~ 234 (320)
+|+|||+|.+.++|..|++.||+. .+.| .+|.|.|+..+.
T Consensus 125 ~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~---~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 125 NVTGLSKGVGFIRFDKRDEADRAIKTLNGT---TPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCCCcCcEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCCCC
Confidence 789999999999999999999999 7776 678899986543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.98 E-value=2.8e-31 Score=255.50 Aligned_cols=195 Identities=31% Similarity=0.523 Sum_probs=167.2
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||+.||+..|.|++|+|.|+..... ......++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|+++|||||+
T Consensus 58 Al~~ln~~~i~gk~i~i~~s~~~~~-~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~ 135 (562)
T TIGR01628 58 ALETMNFKRLGGKPIRIMWSQRDPS-LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVH 135 (562)
T ss_pred HHHHhCCCEECCeeEEeeccccccc-ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEE
Confidence 7889999999999999999864322 122345689999999999999999999999999999999985 79999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECC
Q 020844 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN 161 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 161 (320)
|.+.++|.+|++.++|..+.|+.|.|.....+..... ......++|||+|
T Consensus 136 F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~------------------------------~~~~~~~~l~V~n 185 (562)
T TIGR01628 136 FEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA------------------------------APLKKFTNLYVKN 185 (562)
T ss_pred ECCHHHHHHHHHHhcccEecCceEEEecccccccccc------------------------------ccccCCCeEEEeC
Confidence 9999999999999999999999999976544322110 0112236799999
Q ss_pred CCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCccccc----CeEeEEEecCC
Q 020844 162 LAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQMKCSWGSK 232 (320)
Q Consensus 162 l~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~----g~~l~v~~a~~ 232 (320)
|+.++|+++|+++|+.|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+. |+.|.|.++.+
T Consensus 186 l~~~~tee~L~~~F~~fG--~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~---~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 186 LDPSVNEDKLRELFAKFG--EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK---KIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred CCCcCCHHHHHHHHHhcC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc---EecccccceeeEeecccC
Confidence 999999999999999999 8999988754 789999999999999999999999 999 99999988754
Q ss_pred C
Q 020844 233 P 233 (320)
Q Consensus 233 ~ 233 (320)
+
T Consensus 261 k 261 (562)
T TIGR01628 261 R 261 (562)
T ss_pred h
Confidence 3
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.98 E-value=3.9e-31 Score=247.75 Aligned_cols=217 Identities=22% Similarity=0.368 Sum_probs=155.4
Q ss_pred ccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEec
Q 020844 4 LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83 (320)
Q Consensus 4 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 83 (320)
.-+||+...|.|+.+ |. ...+...++|||+|||++++|++|+++|++||.|.+++|++| .+|+++|||||+|.
T Consensus 35 ~~~~g~r~~g~Pp~~-~~-----~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~ 107 (578)
T TIGR01648 35 VQENGQRKYGGPPPG-WS-----GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFC 107 (578)
T ss_pred cccCCcccCCCCCCc-cc-----CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeC
Confidence 334444444555543 21 222345689999999999999999999999999999999999 69999999999999
Q ss_pred CHHHHHHHHHHhCCCeeC-CeeEEEEeccCCCCCC------Ccc---------c-CCccc--cc---------------c
Q 020844 84 NQQDAQSAINDLTGKWLG-SRQIRCNWATKGAGNN------EDK---------Q-SSDAK--SV---------------V 129 (320)
Q Consensus 84 ~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~~~~~------~~~---------~-~~~~~--~~---------------~ 129 (320)
+.++|++|++.||+..+. |+.|.|.++......- ... . ..... .+ .
T Consensus 108 ~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFV 187 (578)
T TIGR01648 108 GKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFV 187 (578)
T ss_pred CHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEE
Confidence 999999999999999884 7777776553211100 000 0 00000 00 0
Q ss_pred c-------------cCCCC-CCCC-------CCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhcc--CCccEEEE
Q 020844 130 E-------------LTNGS-SEDG-------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL--GAGVIEEV 186 (320)
Q Consensus 130 ~-------------~~~~~-~~~~-------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~~~i~~~ 186 (320)
. ..... ...+ ...............++|||+||+.++++++|+++|++| | .|++|
T Consensus 188 eF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G--~I~rV 265 (578)
T TIGR01648 188 EYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG--KVERV 265 (578)
T ss_pred EcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCC--ceEEE
Confidence 0 00000 0000 000111112223345789999999999999999999999 8 99999
Q ss_pred EeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 187 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 187 ~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
++.+ +||||+|.+.++|.+|++.||+. .|.|+.|+|.|+++..
T Consensus 266 ~~~r--gfAFVeF~s~e~A~kAi~~lnG~---~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 266 KKIR--DYAFVHFEDREDAVKAMDELNGK---ELEGSEIEVTLAKPVD 308 (578)
T ss_pred Eeec--CeEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEccCCC
Confidence 8875 59999999999999999999999 9999999999997653
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=2.5e-31 Score=216.93 Aligned_cols=224 Identities=30% Similarity=0.401 Sum_probs=179.1
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||..|||..+.++.|||..+.+++ +.....+|||.+||..+|..||..+|++||.|..-+|+.|..||.+||.+||.
T Consensus 99 AintlNGLrLQ~KTIKVSyARPSs---~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiR 175 (360)
T KOG0145|consen 99 AINTLNGLRLQNKTIKVSYARPSS---DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIR 175 (360)
T ss_pred HHhhhcceeeccceEEEEeccCCh---hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEE
Confidence 799999999999999999998887 45566799999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCe--eEEEEeccCCCCCCCcccC-----Ccccc----------cc---ccC------CCC
Q 020844 82 FRNQQDAQSAINDLTGKWLGSR--QIRCNWATKGAGNNEDKQS-----SDAKS----------VV---ELT------NGS 135 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~--~l~v~~a~~~~~~~~~~~~-----~~~~~----------~~---~~~------~~~ 135 (320)
|...++|+.|+..|||..-.|+ +|.|.++..+......... +.... .. ... ..+
T Consensus 176 FDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rf 255 (360)
T KOG0145|consen 176 FDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARF 255 (360)
T ss_pred ecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccC
Confidence 9999999999999999987664 7999998655332211100 00000 00 000 000
Q ss_pred CCC----CCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHH
Q 020844 136 SED----GKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEA 205 (320)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A 205 (320)
+.. .........+......-+|||-||.++.+|..|.++|++|| .|..|++.|| |||+||.+.+-++|
T Consensus 256 sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFG--Av~nVKvirD~ttnkCKGfgFVtMtNYdEA 333 (360)
T KOG0145|consen 256 SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFG--AVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 333 (360)
T ss_pred CCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCccc--ceeeEEEEecCCcccccceeEEEecchHHH
Confidence 000 01111122333444567899999999999999999999999 9999999988 89999999999999
Q ss_pred HHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 206 ALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 206 ~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
..|+..|||. .++++.|.|+|...+
T Consensus 334 amAi~sLNGy---~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 334 AMAIASLNGY---RLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHHHhcCc---cccceEEEEEEecCC
Confidence 9999999999 999999999997654
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=5.3e-30 Score=241.14 Aligned_cols=194 Identities=17% Similarity=0.226 Sum_probs=145.7
Q ss_pred CceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 32 GHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 32 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
++++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|..|++.|||..+.|++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 457999999998 69999999999999999999999873 589999999999999999999999999999999998
Q ss_pred cCCCCCCCcccC-CccccccccCCCCCCCCCC-CCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe
Q 020844 111 TKGAGNNEDKQS-SDAKSVVELTNGSSEDGKE-TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188 (320)
Q Consensus 111 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~ 188 (320)
............ .+................. ..........+++.+|||+|||.++++++|+++|+.||...++.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 654322211100 0000000000000000000 00000011234668999999999999999999999999434888888
Q ss_pred eCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE------eEEEecCCC
Q 020844 189 QRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ------MKCSWGSKP 233 (320)
Q Consensus 189 ~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~------l~v~~a~~~ 233 (320)
... +++|||+|.+.++|.+|+..||+. .+.++. |+|+|+++.
T Consensus 429 ~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~---~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDNERSKMGLLEWESVEDAVEALIALNHH---QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCC---ccCCCCCCccceEEEEeccCC
Confidence 654 589999999999999999999999 999885 999998754
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=4.4e-30 Score=241.68 Aligned_cols=175 Identities=28% Similarity=0.493 Sum_probs=149.4
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+...++|||+|||.++++++|+++|+.||.|.+|+|++|+.+|.++|||||+|.+.++|.+|+ .|+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 445789999999999999999999999999999999999999999999999999999999999 6999999999999987
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+........... .......+..++|||+|||..+++++|+++|++|| .|..+.+.
T Consensus 165 ~~~~~~~~~~~~-----------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~ 219 (457)
T TIGR01622 165 SQAEKNRAAKAA-----------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLH 219 (457)
T ss_pred cchhhhhhhhcc-----------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEE
Confidence 654322111000 00000112257899999999999999999999999 89999888
Q ss_pred CC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 190 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 190 ~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
++ +|||||+|.+.++|.+|+..|||. .+.|+.|+|.|+...
T Consensus 220 ~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~---~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 220 RDPETGRSKGFGFIQFHDAEEAKEALEVMNGF---ELAGRPIKVGYAQDS 266 (457)
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHhcCCc---EECCEEEEEEEccCC
Confidence 43 789999999999999999999999 999999999998743
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=6e-30 Score=243.95 Aligned_cols=217 Identities=17% Similarity=0.216 Sum_probs=166.2
Q ss_pred hhccccCcccCCCceEEEecccCCCC--------------------------cCCCCceeEEEcCCCccCcHHHHHHHhc
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQR--------------------------EDTSGHFNIFVGDLSPEVTDATLFACFS 55 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~--------------------------~~~~~~~~l~V~nLp~~~te~~l~~~F~ 55 (320)
|| .|||..|.|++|+|.+....... ......++|||+|||..+|+++|+++|+
T Consensus 239 Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 317 (509)
T TIGR01642 239 AM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE 317 (509)
T ss_pred hh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 56 59999999999999865432200 0123357999999999999999999999
Q ss_pred cCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCC
Q 020844 56 VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGS 135 (320)
Q Consensus 56 ~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (320)
.||.|..+.|++++.+|.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++.......................
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~-- 395 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAK-- 395 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccc--
Confidence 999999999999998999999999999999999999999999999999999999875433221111110000000000
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEECCCCcc--C--------cHHHHHHHHhccCCccEEEEEeeCC---------CcEEE
Q 020844 136 SEDGKETTNTEAPENNPQYTTVYVGNLAPE--V--------TQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGF 196 (320)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~--~--------t~~~l~~~F~~~G~~~i~~~~~~~~---------~g~af 196 (320)
............++++|+|.|+... + ..++|+++|++|| .|+.|.|.++ .|++|
T Consensus 396 -----~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--~v~~v~i~~~~~~~~~~~~~G~~f 468 (509)
T TIGR01642 396 -----ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--PLINIVIPRPNGDRNSTPGVGKVF 468 (509)
T ss_pred -----cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--CeeEEEeeccCcCCCcCCCcceEE
Confidence 0000001112345688999999642 1 2367999999999 9999999864 48999
Q ss_pred EEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020844 197 VRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 197 V~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
|+|.+.++|.+|+..|||. +|+|+.|.|.|..
T Consensus 469 V~F~~~e~A~~A~~~lnGr---~~~gr~v~~~~~~ 500 (509)
T TIGR01642 469 LEYADVRSAEKAMEGMNGR---KFNDRVVVAAFYG 500 (509)
T ss_pred EEECCHHHHHHHHHHcCCC---EECCeEEEEEEeC
Confidence 9999999999999999999 9999999999864
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.2e-29 Score=238.70 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=163.8
Q ss_pred hhcc--ccCcccCCCceEEEecccCCC-CcC--------CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCC
Q 020844 2 AILS--LNGRHLFGQPIKVNWAYASGQ-RED--------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK 70 (320)
Q Consensus 2 ai~~--l~g~~~~g~~i~v~~~~~~~~-~~~--------~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 70 (320)
||+. +|+..|.|++|.|.|+..+.. +.. .+.-.+|||+||++.+|+++|+++|++||.|.+|.|++++.
T Consensus 54 Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~ 133 (481)
T TIGR01649 54 CVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN 133 (481)
T ss_pred HHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 5554 478999999999999875431 111 12235899999999999999999999999999999987642
Q ss_pred CCCccceEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeccCCCCC------CCcccCCccc----c--c---c-ccC
Q 020844 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS--RQIRCNWATKGAGN------NEDKQSSDAK----S--V---V-ELT 132 (320)
Q Consensus 71 ~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~~------~~~~~~~~~~----~--~---~-~~~ 132 (320)
+|+|||+|.+.++|.+|++.|||..+.| +.|+|.|+....-. .......... . . . ...
T Consensus 134 ----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~ 209 (481)
T TIGR01649 134 ----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQ 209 (481)
T ss_pred ----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccc
Confidence 4799999999999999999999999964 58999998753311 0000000000 0 0 0 000
Q ss_pred C-------------C--------------CCCCC-----CC------------CCCCCCCCCCCcceEEEECCCCc-cCc
Q 020844 133 N-------------G--------------SSEDG-----KE------------TTNTEAPENNPQYTTVYVGNLAP-EVT 167 (320)
Q Consensus 133 ~-------------~--------------~~~~~-----~~------------~~~~~~~~~~~~~~~l~V~nl~~-~~t 167 (320)
+ + ..... .. ......+...+++++|||+||++ .++
T Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt 289 (481)
T TIGR01649 210 PALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVN 289 (481)
T ss_pred cccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCC
Confidence 0 0 00000 00 00000111234668999999998 699
Q ss_pred HHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 168 QLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 168 ~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+++|+++|+.|| .|..+++.++ +|+|||+|.+.++|..|+..||+. .+.|+.|+|.+++..
T Consensus 290 ~~~L~~lF~~yG--~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~---~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 290 CDRLFNLFCVYG--NVERVKFMKNKKETALIEMADPYQAQLALTHLNGV---KLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHHHhcC--CeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCceEEEEEcccc
Confidence 999999999999 9999999877 699999999999999999999999 999999999998654
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.9e-30 Score=225.26 Aligned_cols=198 Identities=23% Similarity=0.371 Sum_probs=157.5
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee-CCeeEEEEe
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNW 109 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~-~g~~l~v~~ 109 (320)
.-.+-|||+.||.++.|+||.-+|++.|+|-+++|+.|+.+|.+||||||.|.+.++|++|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999988 688888887
Q ss_pred ccCCCCCC------Ccc---------------------------cCCccccccc-------------c--------CCCC
Q 020844 110 ATKGAGNN------EDK---------------------------QSSDAKSVVE-------------L--------TNGS 135 (320)
Q Consensus 110 a~~~~~~~------~~~---------------------------~~~~~~~~~~-------------~--------~~~~ 135 (320)
+..+...- ... ..+....+.. . .+..
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 74433210 000 0000000000 0 0001
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 136 SEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
.....++..+...+.....+.|||.||+.++|++.|+++|++|| .|+.|+.++| ||||.|.+.++|.+|++.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G--~veRVkk~rD--YaFVHf~eR~davkAm~~~ngk 316 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFG--KVERVKKPRD--YAFVHFAEREDAVKAMKETNGK 316 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhcc--ceEEeecccc--eeEEeecchHHHHHHHHHhcCc
Confidence 11112223333444556779999999999999999999999999 9999999987 9999999999999999999999
Q ss_pred CcccccCeEeEEEecCCCCC
Q 020844 216 QSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 216 ~~~~~~g~~l~v~~a~~~~~ 235 (320)
+|+|..|.|.+|++...
T Consensus 317 ---eldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 317 ---ELDGSPIEVTLAKPVDK 333 (506)
T ss_pred ---eecCceEEEEecCChhh
Confidence 99999999999987543
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3.7e-28 Score=228.65 Aligned_cols=225 Identities=25% Similarity=0.400 Sum_probs=165.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCc---------CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCC
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQRE---------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 72 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~---------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g 72 (320)
|| .|||..|.|++|.|.++.....+. .....++|||+|||.++||++|+++|+.||.|..|.|++++.+|
T Consensus 147 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g 225 (457)
T TIGR01622 147 AL-ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG 225 (457)
T ss_pred HH-HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC
Confidence 45 499999999999999875433221 11236899999999999999999999999999999999999889
Q ss_pred CccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCC--------cccc-----------------
Q 020844 73 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSS--------DAKS----------------- 127 (320)
Q Consensus 73 ~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~--------~~~~----------------- 127 (320)
.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+............. ....
T Consensus 226 ~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T TIGR01622 226 RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDD 305 (457)
T ss_pred ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCC
Confidence 999999999999999999999999999999999999976332111000000 0000
Q ss_pred ---ccccCCC---------CCCCC----------------CCCCCCCCCC--CCCcceEEEECCCCccCc----------
Q 020844 128 ---VVELTNG---------SSEDG----------------KETTNTEAPE--NNPQYTTVYVGNLAPEVT---------- 167 (320)
Q Consensus 128 ---~~~~~~~---------~~~~~----------------~~~~~~~~~~--~~~~~~~l~V~nl~~~~t---------- 167 (320)
.....+. ..... ........+. .....++|+|.||....+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~ 385 (457)
T TIGR01622 306 GDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEI 385 (457)
T ss_pred CCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHH
Confidence 0000000 00000 0000000011 224568999999955443
Q ss_pred HHHHHHHHhccCCccEEEEEeeC--CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 168 QLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 168 ~~~l~~~F~~~G~~~i~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.+||++.|++|| .|+.+.+.. ..|++||+|.+.++|..|+..|||. +|+|+.|.+.|...
T Consensus 386 ~~dv~~e~~k~G--~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr---~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 386 LDDVKEECSKYG--GVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGR---YFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcC--CeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCc---ccCCeEEEEEEEcH
Confidence 368999999999 899988863 3799999999999999999999999 99999999998643
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.5e-29 Score=205.25 Aligned_cols=165 Identities=28% Similarity=0.486 Sum_probs=148.3
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
++..++|.|.-||.++|+||||.+|...|+|++|+++|||.+|.+-||+||.|.+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+.+....-.. ..|||.+||..+|..||+++|++|| .|...+++
T Consensus 118 ARPSs~~Ik~-----------------------------------aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL 160 (360)
T KOG0145|consen 118 ARPSSDSIKD-----------------------------------ANLYVSGLPKTMTQKELEQIFSPFG--RIITSRIL 160 (360)
T ss_pred ccCChhhhcc-----------------------------------cceEEecCCccchHHHHHHHHHHhh--hhhhhhhh
Confidence 9875432211 4699999999999999999999999 77777776
Q ss_pred CC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEecCCCC
Q 020844 190 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPT 234 (320)
Q Consensus 190 ~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a~~~~ 234 (320)
.+ ||.+||.|+..++|+.|+..|||. .-.| .+|.|+|+..+.
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~---~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGCTEPITVKFANNPS 210 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCC---CCCCCCCCeEEEecCCcc
Confidence 55 899999999999999999999999 5444 689999997663
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=8.4e-29 Score=192.21 Aligned_cols=168 Identities=30% Similarity=0.481 Sum_probs=145.7
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+...+|||+||+..++++.|.++|-..|+|.+++|++|+.+...+|||||+|.++|+|+-|+..||...+.||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEE-EEee
Q 020844 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQ 189 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~-~~~~ 189 (320)
....... ..+.+|||+||++++++..|.+.|+.|| .+.. -.+.
T Consensus 87 s~~~~nl----------------------------------~vganlfvgNLd~~vDe~~L~dtFsafG--~l~~~P~i~ 130 (203)
T KOG0131|consen 87 SAHQKNL----------------------------------DVGANLFVGNLDPEVDEKLLYDTFSAFG--VLISPPKIM 130 (203)
T ss_pred ccccccc----------------------------------cccccccccccCcchhHHHHHHHHHhcc--ccccCCccc
Confidence 6222111 1115799999999999999999999999 3333 2333
Q ss_pred C------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCCCC
Q 020844 190 R------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPG 237 (320)
Q Consensus 190 ~------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~~~ 237 (320)
+ .+|++||.|.+.|.+.+|+..+|+. .+.+++++|+|+.++...+
T Consensus 131 rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq---~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 131 RDPDTGNPKGFGFINYASFEASDAAIGSMNGQ---YLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccccCCCCCCCeEEechhHHHHHHHHHHhccc---hhcCCceEEEEEEecCCCc
Confidence 3 3789999999999999999999999 9999999999997765443
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.6e-28 Score=208.05 Aligned_cols=171 Identities=25% Similarity=0.499 Sum_probs=147.4
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
-++|||+.+.+++.||.||..|.+||+|.+|.+-+|+.|+++||||||+|+-+|.|.-|++.|||..++||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs- 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS- 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC-
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999998322
Q ss_pred CCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-
Q 020844 113 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 191 (320)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~- 191 (320)
+........+ ...++....++|||..+.++++++||+.+|+.|| +|..|.+-|+
T Consensus 192 --NmpQAQpiID---------------------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~p 246 (544)
T KOG0124|consen 192 --NMPQAQPIID---------------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP 246 (544)
T ss_pred --CCcccchHHH---------------------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccC
Confidence 1111110000 0111223447899999999999999999999999 9999999875
Q ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 192 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 192 -----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
|||+|++|.+..+-..|+..||-+ .++|..|+|..+-.
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlF---DLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVT 289 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchh---hcccceEecccccC
Confidence 899999999999999999999999 99999999987643
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=207.32 Aligned_cols=224 Identities=23% Similarity=0.397 Sum_probs=164.5
Q ss_pred hhccccCcccCCCceEEEecccCCCCc---------------------C--CCCceeEEEcCCCccCcHHHHHHHhccCC
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQRE---------------------D--TSGHFNIFVGDLSPEVTDATLFACFSVYP 58 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~---------------------~--~~~~~~l~V~nLp~~~te~~l~~~F~~~G 58 (320)
|+.++++..|.|+.|.|..++.+.+.+ + +.+.-+|+|+||||.|.+.+|+.+|+.||
T Consensus 63 A~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G 142 (678)
T KOG0127|consen 63 ALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG 142 (678)
T ss_pred HHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc
Confidence 678889999999999999887544321 1 12266899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCccc-----------------
Q 020844 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ----------------- 121 (320)
Q Consensus 59 ~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~----------------- 121 (320)
.|.+|.|++.+ .|.-.|||||+|....+|..|++.+|+..|.||+|-|.|+..+........
T Consensus 143 ~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 143 KVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred eEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 99999999775 677779999999999999999999999999999999999976654332110
Q ss_pred -CC-cccccc---------ccC--CCCCC---------------CCCC-CCC---------CCCCCCCCcceEEEECCCC
Q 020844 122 -SS-DAKSVV---------ELT--NGSSE---------------DGKE-TTN---------TEAPENNPQYTTVYVGNLA 163 (320)
Q Consensus 122 -~~-~~~~~~---------~~~--~~~~~---------------~~~~-~~~---------~~~~~~~~~~~~l~V~nl~ 163 (320)
.. +..... ... ...+. ...+ +.. ....+...-..+|||.|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 00 000000 000 00000 0000 000 0001111223899999999
Q ss_pred ccCcHHHHHHHHhccCCccEEEEEeeC------CCcEEEEEeCCHHHHHHHHHHc-----CC-CCcccccCeEeEEEecC
Q 020844 164 PEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMG-----NT-TQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 164 ~~~t~~~l~~~F~~~G~~~i~~~~~~~------~~g~afV~f~~~~~A~~A~~~l-----~~-~~~~~~~g~~l~v~~a~ 231 (320)
+++|+++|.++|++|| .|.++.+.. ++|.|||.|.+..+|..||+.. .+ . .+.||.|+|..+-
T Consensus 302 fD~tEEel~~~fskFG--~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~---ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 302 FDTTEEELKEHFSKFG--EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV---LLDGRLLKVTLAV 376 (678)
T ss_pred ccccHHHHHHHHHhhc--cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE---EEeccEEeeeecc
Confidence 9999999999999999 677666653 3899999999999999999876 22 4 6889999998763
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=7.9e-26 Score=215.66 Aligned_cols=188 Identities=16% Similarity=0.262 Sum_probs=137.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccC------------CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVY------------PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~------------G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l 95 (320)
..+...++|||+|||+++|+++|+++|..| +.|..+.+ +..+|||||+|.+.++|..|+ .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 345668999999999999999999999874 23444443 446789999999999999999 69
Q ss_pred CCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHH
Q 020844 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175 (320)
Q Consensus 96 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 175 (320)
+|..+.|+.|+|................... .. ........ ............++|||+|||..+++++|+++|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f 316 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQK--NP---DDNAKNVE-KLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL 316 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCC--CC---cccccccc-cccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 9999999999997654332111000000000 00 00000000 000011112234789999999999999999999
Q ss_pred hccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 176 HSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 176 ~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+.|| .|..+.+.++ +|||||+|.+.++|..|++.||+. .+.|+.|.|.++...
T Consensus 317 ~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~---~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 317 ESFG--DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK---DTGDNKLHVQRACVG 375 (509)
T ss_pred HhcC--CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECccC
Confidence 9999 8888888653 799999999999999999999999 999999999998644
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1.9e-25 Score=209.90 Aligned_cols=113 Identities=21% Similarity=0.377 Sum_probs=100.5
Q ss_pred hhccccCcccCCCceEEEecccCCC--------CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQ--------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 73 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~--------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 73 (320)
||+.|||+.|.|++|+|.+...... .+.....++|||+|||+++++++|+++|+.||.|.+++|.+|+.++.
T Consensus 165 Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgk 244 (612)
T TIGR01645 165 ALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 244 (612)
T ss_pred HHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Confidence 7889999999999999997653221 12233467999999999999999999999999999999999998999
Q ss_pred ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020844 74 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 74 ~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
++|||||+|.+.++|.+|++.||+..++|+.|+|.++..++
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999999999987543
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=6.9e-27 Score=193.94 Aligned_cols=147 Identities=26% Similarity=0.457 Sum_probs=137.1
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
+|||+|||.++++.+|+.+|++||.|.+|.|+++ ||||..++...|..|++.|++..|+|..|.|+-++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999976 99999999999999999999999999999999776652
Q ss_pred CCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcE
Q 020844 115 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF 194 (320)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~ 194 (320)
. ..++|+|+||.+.++.+||++.|++|| .|..+.|.++ |
T Consensus 76 k-------------------------------------~stkl~vgNis~tctn~ElRa~fe~yg--pviecdivkd--y 114 (346)
T KOG0109|consen 76 K-------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIVKD--Y 114 (346)
T ss_pred C-------------------------------------CccccccCCCCccccCHHHhhhhcccC--Cceeeeeecc--e
Confidence 1 126899999999999999999999999 9999999976 9
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 195 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 195 afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+||.|+-.++|..|++.||++ +|.|++++|..+++.
T Consensus 115 ~fvh~d~~eda~~air~l~~~---~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 115 AFVHFDRAEDAVEAIRGLDNT---EFQGKRMHVQLSTSR 150 (346)
T ss_pred eEEEEeeccchHHHHhccccc---ccccceeeeeeeccc
Confidence 999999999999999999999 999999999988764
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.1e-26 Score=202.68 Aligned_cols=186 Identities=23% Similarity=0.341 Sum_probs=152.5
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
.+|||++||++++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.+|+++|+....+..+.||.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--
Q 020844 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 191 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-- 191 (320)
..............-.. ..........-..+.-+|.|.|||+.+.+.+|+.+|+.|| .|.++.|++.
T Consensus 86 ~r~e~~~~~e~~~veK~---------~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G--~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKP---------IEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFG--KVVEIVIPRKKD 154 (678)
T ss_pred ccchhcccccchhhhcc---------cccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcc--eEEEEEcccCCC
Confidence 65442111110000000 0000000000011135799999999999999999999999 9999999976
Q ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 192 ---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 192 ---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
.|||||.|....+|..|++.+|+. .|+||+|-|.||-.+
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~---~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGN---KIDGRPVAVDWAVDK 196 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCc---eecCceeEEeeeccc
Confidence 589999999999999999999999 999999999998654
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.2e-25 Score=201.97 Aligned_cols=188 Identities=28% Similarity=0.497 Sum_probs=164.9
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||++||+..+.|++|+|.|+..... .|||.||+++++..+|.++|+.||.|.+|++..|. +| ++|| ||+
T Consensus 53 A~~~~n~~~~~~~~~rim~s~rd~~--------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~ 121 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPIRIMWSQRDPS--------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQ 121 (369)
T ss_pred HHHHcCCcccCCcEEEeehhccCCc--------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEE
Confidence 8999999999999999999964332 29999999999999999999999999999999996 56 9999 999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECC
Q 020844 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN 161 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 161 (320)
|+++++|.+|++.+||..+.|++|.|....++......... .....+.++|.|
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~---------------------------~~~~~t~v~vk~ 174 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE---------------------------YKKRFTNVYVKN 174 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------------------------hhhhhhhhheec
Confidence 99999999999999999999999999988776544332211 111225799999
Q ss_pred CCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 162 LAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 162 l~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
++.++++++|..+|+.+| .|..+.+.++ ++|+||.|++.++|..|+..||+. .+.+..+.|..+..
T Consensus 175 ~~~~~~~~~l~~~f~~~g--~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~---~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 175 LEEDSTDEELKDLFSAYG--SITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK---IFGDKELYVGRAQK 245 (369)
T ss_pred cccccchHHHHHhhcccC--cceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC---cCCccceeeccccc
Confidence 999999999999999999 9999988864 799999999999999999999999 88889988887655
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.8e-25 Score=190.33 Aligned_cols=226 Identities=24% Similarity=0.362 Sum_probs=168.2
Q ss_pred hhccccC-cccCC--CceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE
Q 020844 2 AILSLNG-RHLFG--QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 78 (320)
Q Consensus 2 ai~~l~g-~~~~g--~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a 78 (320)
||.+|+. +.|-| .||+|+.+.... +.-..+++|||+.|+..+||.|++++|++||.|++|+|++|. .+.+||||
T Consensus 92 a~~Alhn~ktlpG~~~pvqvk~Ad~E~--er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGca 168 (510)
T KOG0144|consen 92 AINALHNQKTLPGMHHPVQVKYADGER--ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCA 168 (510)
T ss_pred HHHHhhcccccCCCCcceeecccchhh--hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-ccccccee
Confidence 5667766 44445 688888885443 333568899999999999999999999999999999999995 89999999
Q ss_pred EEEecCHHHHHHHHHHhCCCe-eCC--eeEEEEeccCCCCCCCcccC---------------------------------
Q 020844 79 FVSFRNQQDAQSAINDLTGKW-LGS--RQIRCNWATKGAGNNEDKQS--------------------------------- 122 (320)
Q Consensus 79 fV~f~~~~~A~~A~~~l~~~~-~~g--~~l~v~~a~~~~~~~~~~~~--------------------------------- 122 (320)
||.|.+.|-|..|++.||+.. +.| .+|.|+|++.++........
T Consensus 169 FV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~ 248 (510)
T KOG0144|consen 169 FVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQ 248 (510)
T ss_pred EEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchh
Confidence 999999999999999999974 555 58999999876543211100
Q ss_pred ------Ccccccc----------------------------------c--cCCCCC----------------C-CC----
Q 020844 123 ------SDAKSVV----------------------------------E--LTNGSS----------------E-DG---- 139 (320)
Q Consensus 123 ------~~~~~~~----------------------------------~--~~~~~~----------------~-~~---- 139 (320)
.....+. . .....+ . ..
T Consensus 249 Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~ 328 (510)
T KOG0144|consen 249 QQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNP 328 (510)
T ss_pred hhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccc
Confidence 0000000 0 000000 0 00
Q ss_pred --------------------------------------------------------------------------------
Q 020844 140 -------------------------------------------------------------------------------- 139 (320)
Q Consensus 140 -------------------------------------------------------------------------------- 139 (320)
T Consensus 329 ~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~ 408 (510)
T KOG0144|consen 329 LAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATT 408 (510)
T ss_pred hhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhh
Confidence
Q ss_pred -CCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHc
Q 020844 140 -KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMG 212 (320)
Q Consensus 140 -~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l 212 (320)
..........+.+....|||.+||-+.-+.+|...|.+|| .|...++..+ +.|+||.|++..+|..||..|
T Consensus 409 qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG--~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~am 486 (510)
T KOG0144|consen 409 QQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFG--GVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAM 486 (510)
T ss_pred hhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhcccc--ceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHh
Confidence 0000012233445568899999999999999999999999 7777777655 679999999999999999999
Q ss_pred CCCCcccccCeEeEEEecCCCCC
Q 020844 213 NTTQSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 213 ~~~~~~~~~g~~l~v~~a~~~~~ 235 (320)
||. .++.++|+|...+++..
T Consensus 487 ngf---Qig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 487 NGF---QIGSKRLKVQLKRDRNN 506 (510)
T ss_pred cch---hhccccceEEeeeccCC
Confidence 999 99999999998776543
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.2e-25 Score=179.57 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=162.0
Q ss_pred CCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHH
Q 020844 12 FGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 12 ~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A 91 (320)
++|+|.|....+.++.. ++|+|||+.|...-+|||++.+|.+||+|++|.+.+.. +|.+||||||.|.+.-+|..|
T Consensus 1 mnrpiqvkpadsesrg~---~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaA 76 (371)
T KOG0146|consen 1 MNRPIQVKPADSESRGG---DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAA 76 (371)
T ss_pred CCCCccccccccccCCc---cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHH
Confidence 47899998887665433 56799999999999999999999999999999999985 899999999999999999999
Q ss_pred HHHhCCCee-C--CeeEEEEeccCCCCCCCcccC------------------------------------------Cc--
Q 020844 92 INDLTGKWL-G--SRQIRCNWATKGAGNNEDKQS------------------------------------------SD-- 124 (320)
Q Consensus 92 ~~~l~~~~~-~--g~~l~v~~a~~~~~~~~~~~~------------------------------------------~~-- 124 (320)
|..|||... - ...|.|++++..++...+.-. +.
T Consensus 77 I~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~ 156 (371)
T KOG0146|consen 77 INALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMA 156 (371)
T ss_pred HHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhh
Confidence 999999743 3 457889998765542211100 00
Q ss_pred -------------------cccccccCCCCCCCC-------------------------------------------CCC
Q 020844 125 -------------------AKSVVELTNGSSEDG-------------------------------------------KET 142 (320)
Q Consensus 125 -------------------~~~~~~~~~~~~~~~-------------------------------------------~~~ 142 (320)
..++.......+... ...
T Consensus 157 ~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQs 236 (371)
T KOG0146|consen 157 AFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQS 236 (371)
T ss_pred hhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCC
Confidence 000000000000000 000
Q ss_pred -------------------------------------CCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEE
Q 020844 143 -------------------------------------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185 (320)
Q Consensus 143 -------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~ 185 (320)
.-.....+.+..|.|||-.||.+..+.||...|-+|| .|.+
T Consensus 237 p~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivS 314 (371)
T KOG0146|consen 237 PTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVS 314 (371)
T ss_pred ccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceee
Confidence 0001122345679999999999999999999999999 8888
Q ss_pred EEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 186 VRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 186 ~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
.++.-| |.|+||.|++..+|..|+..|||+ .|+-++|+|...+++.
T Consensus 315 aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF---QIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 315 AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF---QIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeeeehhccccccceeeEecCCchhHHHHHHHhcch---hhhhhhhhhhhcCccc
Confidence 877644 789999999999999999999999 9999999999987664
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=1e-23 Score=189.33 Aligned_cols=222 Identities=23% Similarity=0.365 Sum_probs=161.7
Q ss_pred cccCcccCCCceEEEecccCCCCc-----------CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC
Q 020844 5 SLNGRHLFGQPIKVNWAYASGQRE-----------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 73 (320)
Q Consensus 5 ~l~g~~~~g~~i~v~~~~~~~~~~-----------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 73 (320)
.|+|+.++|.||.|..+...+.+. -..+-++|||+||.++++|++|+.+|++||.|+.|.+.+|..||.
T Consensus 239 aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~ 318 (549)
T KOG0147|consen 239 ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGR 318 (549)
T ss_pred hhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccc
Confidence 799999999999999876543321 123334599999999999999999999999999999999988999
Q ss_pred ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCcccc---cccc--------------CCCCC
Q 020844 74 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS---VVEL--------------TNGSS 136 (320)
Q Consensus 74 ~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~ 136 (320)
++|||||+|.+.++|.+|++.|||..|.|+.|+|.................... .... .+...
T Consensus 319 skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~ 398 (549)
T KOG0147|consen 319 SKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKG 398 (549)
T ss_pred ccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCC
Confidence 999999999999999999999999999999999877644333221100000000 0000 00000
Q ss_pred C----------------------C-----CCCCCCCCCCCCCCcceEEEECCCCcc--Cc--------HHHHHHHHhccC
Q 020844 137 E----------------------D-----GKETTNTEAPENNPQYTTVYVGNLAPE--VT--------QLDLHRHFHSLG 179 (320)
Q Consensus 137 ~----------------------~-----~~~~~~~~~~~~~~~~~~l~V~nl~~~--~t--------~~~l~~~F~~~G 179 (320)
. . .........|.-..++.|+.+.|+=.. .| .+++.+.+++||
T Consensus 399 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g 478 (549)
T KOG0147|consen 399 RSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHG 478 (549)
T ss_pred ccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcC
Confidence 0 0 000000011222245566777776221 11 356777889999
Q ss_pred CccEEEEEeeCCC-cEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020844 180 AGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 180 ~~~i~~~~~~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.|.+|.+.++. |+.||.|.+.++|..|+.+|||. ||.|+.|+..|-.
T Consensus 479 --~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgr---WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 479 --KVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGR---WFAGRMITAKYLP 526 (549)
T ss_pred --CeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhh---hhccceeEEEEee
Confidence 99999998875 99999999999999999999999 9999999999864
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=193.02 Aligned_cols=168 Identities=26% Similarity=0.430 Sum_probs=143.6
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC----ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~----~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
++|||.||++++|.++|..+|...|.|.++.|...+ ++. |.|||||+|.+.++|++|++.|+|+.|.|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 349999999999999999999999999999887654 333 559999999999999999999999999999999999
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+..+........ ......++.|+|.|||+..+..+++.+|..|| .+.+|+++
T Consensus 595 S~~k~~~~~gK~--------------------------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlP 646 (725)
T KOG0110|consen 595 SENKPASTVGKK--------------------------KSKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLP 646 (725)
T ss_pred ccCccccccccc--------------------------cccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccc
Confidence 872221111110 01111247899999999999999999999999 99999998
Q ss_pred CC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 190 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 190 ~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
.. +|||||+|-+..+|.+|+.+|..+ .+.||+|.+.|++..
T Consensus 647 KK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST---HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 647 KKIGKGAHRGFGFVDFLTPREAKNAFDALGST---HLYGRRLVLEWAKSD 693 (725)
T ss_pred hhhcchhhccceeeeccCcHHHHHHHHhhccc---ceechhhheehhccc
Confidence 65 899999999999999999999999 899999999999764
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.2e-23 Score=184.50 Aligned_cols=147 Identities=31% Similarity=0.518 Sum_probs=136.6
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
.|||+ +++||..|+++|+++|++.+++|.+|. | +-|||||.|.++++|++|++++|-..+.|++|++-|+.+..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 999999999999999999999999996 5 99999999999999999999999999999999999987642
Q ss_pred CCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---
Q 020844 115 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--- 191 (320)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--- 191 (320)
..|||.||+++++..+|.++|+.|| .|.+|++..+
T Consensus 77 ----------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g--~ilS~kv~~~~~g 114 (369)
T KOG0123|consen 77 ----------------------------------------SLVFIKNLDESIDNKSLYDTFSEFG--NILSCKVATDENG 114 (369)
T ss_pred ----------------------------------------ceeeecCCCcccCcHHHHHHHHhhc--CeeEEEEEEcCCC
Confidence 2299999999999999999999999 9999999876
Q ss_pred -CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 192 -KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 192 -~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+|+ ||+|+++++|.+|+..+||. .+.|+.|.|.....+
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~---ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGM---LLNGKKIYVGLFERK 153 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCc---ccCCCeeEEeeccch
Confidence 789 99999999999999999999 999999999865443
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=3e-22 Score=174.00 Aligned_cols=167 Identities=26% Similarity=0.459 Sum_probs=142.9
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
..++|||++|+|+++|+.|+++|..||+|.++.+++|+.+++++||+||+|.+++.+.+++ ......|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5789999999999999999999999999999999999999999999999999999999999 446667899999998887
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC
Q 020844 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~ 191 (320)
+.......... ....++||++|+.+++++++++.|++|| .|.++.+.-+
T Consensus 84 ~r~~~~~~~~~-----------------------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVGRH-----------------------------LRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD 132 (311)
T ss_pred Ccccccccccc-----------------------------cceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec
Confidence 65433222110 1347899999999999999999999999 8888877644
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 192 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 192 ------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
+||+||+|.++++..+++.. +-. .|+++.+.|..|.++.
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~---~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTLQ-KFH---DFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccccccceeeEeccccccceeccc-cee---eecCceeeEeeccchh
Confidence 89999999999999988753 445 8999999999987654
No 32
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.87 E-value=8.9e-21 Score=153.43 Aligned_cols=193 Identities=18% Similarity=0.296 Sum_probs=147.3
Q ss_pred CCceeEEEcCCCccCcHHHHHH----HhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020844 31 SGHFNIFVGDLSPEVTDATLFA----CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.++.+|||.||+..+..++|+. +|+.||.|.+|... .+.+.+|-|||.|.+.+.|..|++.|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4455999999999999999998 99999999999887 3678999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCcccCC----ccc----ccccc-C----CCCCCC-CCCCCCCC-CCCCCCcceEEEECCCCccCcHHHH
Q 020844 107 CNWATKGAGNNEDKQSS----DAK----SVVEL-T----NGSSED-GKETTNTE-APENNPQYTTVYVGNLAPEVTQLDL 171 (320)
Q Consensus 107 v~~a~~~~~~~~~~~~~----~~~----~~~~~-~----~~~~~~-~~~~~~~~-~~~~~~~~~~l~V~nl~~~~t~~~l 171 (320)
+.|+..+...-...... +.+ ..... . ++.... ........ .....+++..||+.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 99997765433221110 000 00000 0 000000 00000000 1334678899999999999999999
Q ss_pred HHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCccccc-CeEeEEEecC
Q 020844 172 HRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGS 231 (320)
Q Consensus 172 ~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-g~~l~v~~a~ 231 (320)
..+|++|. -...+++... ++.|||+|.+...|..|...+.+. .+. ...++|.+++
T Consensus 164 ~~lf~qf~--g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~---~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFP--GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF---KITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCc--ccceeEeccCCCceeEEecchhhhhHHHhhhhccc---eeccCceEEecccC
Confidence 99999998 7888888876 789999999999999999999998 665 7778887764
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=1.6e-22 Score=181.72 Aligned_cols=180 Identities=26% Similarity=0.380 Sum_probs=149.6
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
++.+-|+||+-.|+...++.||.++|+.+|.|.+|+++.|+.+++++|.|||+|.+.+.+..|+ .|.|+.+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 4556789999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe
Q 020844 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~ 188 (320)
.....++..... .... ....-..+...|||+||...+++++|+.+|++|| .|..|.+
T Consensus 254 ~sEaeknr~a~~--s~a~-------------------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l 310 (549)
T KOG0147|consen 254 LSEAEKNRAANA--SPAL-------------------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQL 310 (549)
T ss_pred ccHHHHHHHHhc--cccc-------------------cccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeee
Confidence 765433221000 0000 0000011113399999999999999999999999 8888877
Q ss_pred eCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCC
Q 020844 189 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 189 ~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~ 235 (320)
.++ +||+||+|.+.++|.+|++.|||. ++.|+.|+|........
T Consensus 311 ~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf---elAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 311 TKDSETGRSKGFGFITFVNKEDARKALEQLNGF---ELAGRLIKVSVVTERVD 360 (549)
T ss_pred ccccccccccCcceEEEecHHHHHHHHHHhccc---eecCceEEEEEeeeecc
Confidence 655 899999999999999999999999 99999999987765543
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.6e-20 Score=146.45 Aligned_cols=170 Identities=22% Similarity=0.346 Sum_probs=135.5
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+++|||+|||.++.|.||.++|.+||.|.+|.+... ...-.||||+|+++.+|+.||..-+|..+.|+.|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999988532 334579999999999999999988999999999999998
Q ss_pred cCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC
Q 020844 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~ 190 (320)
.......... ...+.....+........+....+-.++.|.+||.+-++++|+++..+.| .|....+.+
T Consensus 81 rggr~s~~~~---------G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~r 149 (241)
T KOG0105|consen 81 RGGRSSSDRR---------GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQR 149 (241)
T ss_pred cCCCcccccc---------cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeec
Confidence 7654221111 11111111122222233344445557899999999999999999999999 999999888
Q ss_pred CCcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 191 DKGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 191 ~~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
+ |.+.|+|...|+.+-|+..|+..
T Consensus 150 D-g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 150 D-GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred c-cceeeeeeehhhHHHHHHhhccc
Confidence 7 79999999999999999999887
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=5.1e-21 Score=150.46 Aligned_cols=112 Identities=34% Similarity=0.430 Sum_probs=93.5
Q ss_pred ccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEec
Q 020844 4 LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83 (320)
Q Consensus 4 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 83 (320)
..|.|....+..-.......+-..+....+++|||+|||+++||++|+++|++||.|.+++|+.|+.+++++|||||+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~ 84 (144)
T PLN03134 5 NKLGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 (144)
T ss_pred hhhhhhhcccccCCCCCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEEC
Confidence 34556555554444444433333344566789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020844 84 NQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 84 ~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
+.++|++|++.|++..|.|++|+|.++..+..
T Consensus 85 ~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 85 DEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 99999999999999999999999999876543
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.1e-21 Score=158.91 Aligned_cols=135 Identities=28% Similarity=0.582 Sum_probs=114.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
++..|+|||+||+.++||+-|..||...|.|.+++|+.| .|+|.|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 455789999999999999999999999999999999876 455666
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+..+...... .......+||+.|..+++-++|++.|.+|| +|.++++.
T Consensus 48 a~~p~nQsk~------------------------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFG--evS~akvi 95 (321)
T KOG0148|consen 48 ATAPGNQSKP------------------------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFG--EVSDAKVI 95 (321)
T ss_pred ccCcccCCCC------------------------------ccccceeEEehhcchhcchHHHHHHhcccc--ccccceEe
Confidence 6554211111 111136799999999999999999999999 99999998
Q ss_pred CC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020844 190 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 190 ~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
|| |||+||.|-+.++|+.|+..|||. +|++|.|+.+|+..+.
T Consensus 96 rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq---WlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 96 RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ---WLGRRTIRTNWATRKP 143 (321)
T ss_pred ecccCCcccceeEEeccchHHHHHHHHHhCCe---eeccceeeccccccCc
Confidence 87 899999999999999999999999 9999999999997664
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.3e-20 Score=158.78 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=101.3
Q ss_pred hhccccCcccCCCceEEEecccCCCC--------cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 73 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~--------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 73 (320)
|+|.|||..++||.|||.+.+.-.+- ++.+.-.+|||..+.++.+|+||+..|+.||+|..|++-++..++.
T Consensus 171 AlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~ 250 (544)
T KOG0124|consen 171 ALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 250 (544)
T ss_pred HHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC
Confidence 78899999999999999987654321 2344567999999999999999999999999999999999998889
Q ss_pred ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020844 74 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 74 ~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
+|||+||+|.+..+-..|+..||-+.++|..|+|..+..+..
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 999999999999999999999999999999999988755443
No 38
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.85 E-value=9.6e-21 Score=169.52 Aligned_cols=111 Identities=28% Similarity=0.444 Sum_probs=100.2
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||+.|||+.|.+++|+|.++++.. ....+++|||+|||+++||++|+++|++||+|++++|++|+.+++++|||||+
T Consensus 165 Ai~~LnG~~l~gr~i~V~~a~p~~---~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~ 241 (346)
T TIGR01659 165 AIKNLNGITVRNKRLKVSYARPGG---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVR 241 (346)
T ss_pred HHHHcCCCccCCceeeeecccccc---cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEE
Confidence 788999999999999999987543 23346789999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCC--eeEEEEeccCCCC
Q 020844 82 FRNQQDAQSAINDLTGKWLGS--RQIRCNWATKGAG 115 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~ 115 (320)
|.+.++|++|++.||+..+.+ ++|.|.++.....
T Consensus 242 F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 242 FNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999999998865 7899999876544
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.79 E-value=9e-19 Score=164.81 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=120.0
Q ss_pred hhccccC--cccCCCceEEEecccCCCCcC--CCCceeEEEcCCCccCcHHHHHHHhccC--CCeeEEEEeecCCCCCcc
Q 020844 2 AILSLNG--RHLFGQPIKVNWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSR 75 (320)
Q Consensus 2 ai~~l~g--~~~~g~~i~v~~~~~~~~~~~--~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~ 75 (320)
|++.|+. ..+.|+.|+|.|+.+...... ....++|||+|||+++||++|+++|+.| |+|++|++++
T Consensus 198 AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------- 269 (578)
T TIGR01648 198 ARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------- 269 (578)
T ss_pred HHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------
Confidence 5666643 468899999999976553222 2346789999999999999999999999 9999998764
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcce
Q 020844 76 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155 (320)
Q Consensus 76 G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
+||||+|.+.++|.+|++.||+..|.|+.|+|.|+.+............. ...................+...
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~-------gg~~~~~~~~~~~~g~~~sp~s~ 342 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGT-------GGRGKERQAARQSLGQVYDPASR 342 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccccccccccc-------CCCcccccccccccCcccCcccc
Confidence 49999999999999999999999999999999999775432111100000 00000000011112233444568
Q ss_pred EEEECCCCccCcHHHHHHHHhccC
Q 020844 156 TVYVGNLAPEVTQLDLHRHFHSLG 179 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G 179 (320)
+++++|++++.+++.+.++|..+|
T Consensus 343 ~~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 343 SLAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred ccccccccccccccchhhccccCc
Confidence 999999999999999999999998
No 40
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.78 E-value=6.7e-18 Score=135.67 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=127.9
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEee-cCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC---CeeEE
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW-DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 106 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~ 106 (320)
..-|+|||.+||.++...||+.+|..|--.+.+.+.. ++.....+-+|||.|.+..+|..|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3468999999999999999999999996566555543 3333445679999999999999999999999984 88999
Q ss_pred EEeccCCCCCCCcccCCcccc--cc-------------------ccCCCCCCCC-------CC----------------C
Q 020844 107 CNWATKGAGNNEDKQSSDAKS--VV-------------------ELTNGSSEDG-------KE----------------T 142 (320)
Q Consensus 107 v~~a~~~~~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~-------~~----------------~ 142 (320)
+++++........+....+.+ .. ......+... .+ +
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 999876554332222110000 00 0000000000 00 0
Q ss_pred -------CCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 143 -------TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 143 -------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
...........+.+|||.||..+++|++|+.+|+.|....+..++-..+-..+|++|++.+.|..|+..|.|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 0001112223568999999999999999999999997345555544444568999999999999999999887
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=6.8e-18 Score=150.21 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=128.7
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
....-|.+++|||+||++||.++|+.++ |+++.+.++ +|+..|-|||+|.+.|++++|+ +.+...+..|.|.|..+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEcc
Confidence 3456789999999999999999999985 888777665 7999999999999999999999 56888899999999977
Q ss_pred cCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE--e
Q 020844 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR--V 188 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~--~ 188 (320)
.........+.... ....+...|-+.+||+.||++||.++|+.. .|+..- +
T Consensus 84 ~~~e~d~~~~~~g~------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL---~Iv~~gi~l 136 (510)
T KOG4211|consen 84 GGAEADWVMRPGGP------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGL---EIVPDGILL 136 (510)
T ss_pred CCccccccccCCCC------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCC---cccccceee
Confidence 66544322221110 111222679999999999999999999966 343332 2
Q ss_pred e-----CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 189 Q-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 189 ~-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
+ |..|.|||+|++.+.|++|+.. |.. .|+.+-|.|-.+
T Consensus 137 ~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre---~iGhRYIEvF~S 179 (510)
T KOG4211|consen 137 PMDQRGRPTGEAFVQFESQESAEIALGR-HRE---NIGHRYIEVFRS 179 (510)
T ss_pred eccCCCCcccceEEEecCHHHHHHHHHH-HHH---hhccceEEeehh
Confidence 2 3368999999999999999976 555 688888888754
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=144.72 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=142.6
Q ss_pred CCceeEEEcCCCccCcHHHHHHHh-ccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
...|.|||.|||+++.+.||+++| ++.|+|+.|.++.|. +|++||||.|||+++|.+++|++.||...+.||+|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 446779999999999999999999 678999999999995 899999999999999999999999999999999999986
Q ss_pred ccCCCCCCCcccCCcc------------------------------ccccccCCCCCCCCCCC-----------------
Q 020844 110 ATKGAGNNEDKQSSDA------------------------------KSVVELTNGSSEDGKET----------------- 142 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~----------------- 142 (320)
..............+. .........+.......
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 5432221110000000 00000000000000000
Q ss_pred --CCC-CCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCC
Q 020844 143 --TNT-EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 143 --~~~-~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
... ..-...+-..++||+||...+....|++.|.-.| .+..+.+.-+ +|+|.++|.++-.|..|+..+++
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000 0011334457899999999999999999999999 7877766533 79999999999999999999998
Q ss_pred CCcccccCeEeEEEecC
Q 020844 215 TQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 215 ~~~~~~~g~~l~v~~a~ 231 (320)
. -+..++..++..+
T Consensus 279 ~---g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 Q---GLFDRRMTVRLDR 292 (608)
T ss_pred C---CCccccceeeccc
Confidence 7 6777887777643
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=4.5e-17 Score=141.60 Aligned_cols=191 Identities=19% Similarity=0.306 Sum_probs=144.9
Q ss_pred ceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 33 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 33 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
+..|.|.||.. .+|++-|..+|.-||+|..|+|+.++.+ -|+|.|.+...|+-|++.|+|..++|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999985 5899999999999999999999988643 69999999999999999999999999999999998
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCC-CCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee-
Q 020844 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT-EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ- 189 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~- 189 (320)
...-....+...+..-. .....+...+-..... .-....+++.+|+..|+|.+++||+|+..|..-|+ .+...++.
T Consensus 372 H~~vqlp~egq~d~glT-~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~-~vkafkff~ 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLT-KDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGG-QVKAFKFFQ 449 (492)
T ss_pred CccccCCCCCCcccccc-ccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCc-eEEeeeecC
Confidence 76544433322221111 1111111111111111 11223366789999999999999999999999984 55555544
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccC-eEeEEEecCCC
Q 020844 190 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWGSKP 233 (320)
Q Consensus 190 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g-~~l~v~~a~~~ 233 (320)
+++.++++.+.+.|+|..|+-.+|.. .+++ ..|+|+|+++.
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh---~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNH---YLGENHHLRVSFSKST 491 (492)
T ss_pred CCcceeecccCChhHhhhhccccccc---cCCCCceEEEEeeccc
Confidence 57899999999999999999999988 7776 58999998753
No 44
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.9e-18 Score=140.31 Aligned_cols=166 Identities=24% Similarity=0.380 Sum_probs=131.6
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
.+|||++||+.+.+.+|.++|..||.|.++.+.. ||+||+|.+..+|..|+..+++..+.|..+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3699999999999999999999999999988742 59999999999999999999999999988999988754
Q ss_pred CCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCc
Q 020844 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 193 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g 193 (320)
........... .......-.....+.+.++|.++...+.+.+|.+.|+++| .+..... ..+
T Consensus 74 ~~~~g~~~~g~---------------r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~--~~~ 134 (216)
T KOG0106|consen 74 RRGRGRPRGGD---------------RRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA--RRN 134 (216)
T ss_pred ccccCCCCCCC---------------ccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh--hcc
Confidence 32220000000 0000011112223447899999999999999999999999 6655444 467
Q ss_pred EEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 194 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 194 ~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
++||+|++.++|.+|++.+++. .+.+++|++..
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~---~~~~~~l~~~~ 167 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGK---KLNGRRISVEK 167 (216)
T ss_pred ccceeehhhhhhhhcchhccch---hhcCceeeecc
Confidence 9999999999999999999999 99999999954
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.73 E-value=1.2e-16 Score=136.25 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=141.4
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCee--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 101 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~ 101 (320)
..-++.|||.|||.++|-+++.++|++||-|. .|++.++. .|..||-|++.|-..+++.-|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44577899999999999999999999999884 48899995 6999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCCCcccCC---ccccccccCC-CCCCCCCCCCCCCCCCCCCcceEEEECCCCc----cCc------
Q 020844 102 SRQIRCNWATKGAGNNEDKQSS---DAKSVVELTN-GSSEDGKETTNTEAPENNPQYTTVYVGNLAP----EVT------ 167 (320)
Q Consensus 102 g~~l~v~~a~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~----~~t------ 167 (320)
|+.|+|+.+.-........... .......... ....-...+. ...+......++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd-~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPD-RDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCC-ccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 9999999986433221111000 0000000000 0000000001 12233334457888888722 112
Q ss_pred -HHHHHHHHhccCCccEEEEEee--CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 168 -QLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 168 -~~~l~~~F~~~G~~~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
+++|++-+++|| .|..|.+. ++.|.+-|.|.+.++|..|++.|+|+ +|+||.|.-+.
T Consensus 289 lkedl~eec~K~G--~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR---~fdgRql~A~i 348 (382)
T KOG1548|consen 289 LKEDLTEECEKFG--QVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR---WFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHHhC--CcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe---eecceEEEEEE
Confidence 467888899999 88888887 66899999999999999999999999 99999998764
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=2.5e-17 Score=113.66 Aligned_cols=70 Identities=37% Similarity=0.769 Sum_probs=67.5
Q ss_pred EEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020844 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 36 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|..|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999885
No 47
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=1.5e-17 Score=140.78 Aligned_cols=105 Identities=29% Similarity=0.418 Sum_probs=90.1
Q ss_pred cccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecC
Q 020844 5 SLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 84 (320)
Q Consensus 5 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~ 84 (320)
.=+|-.++|.+|....+..++ .....++|+|+|||+...|.||+.+|++||.|.+|.|+.+ ..-+||||||+|++
T Consensus 71 ~~~~~~t~g~~~~~~~st~s~---s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen 145 (376)
T KOG0125|consen 71 TSNGAPTDGQPIQTQPSTNSS---SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMEN 145 (376)
T ss_pred ccCCCCCCCCccccCCCCcCC---CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecC
Confidence 345666777777776665443 4455679999999999999999999999999999999987 35699999999999
Q ss_pred HHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020844 85 QQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 85 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
.+||++|.++|||.++.||+|.|..++.+-
T Consensus 146 ~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 146 PADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 999999999999999999999999987653
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.6e-17 Score=134.20 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=79.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
++.+|.|.||+.+++|++|+++|.+||.|..+.|.+|++||.+||||||.|.+.++|.+||+.|||.-+..-.|+|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 020844 112 KG 113 (320)
Q Consensus 112 ~~ 113 (320)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=3.1e-17 Score=133.26 Aligned_cols=80 Identities=36% Similarity=0.588 Sum_probs=74.1
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
.-++|||++|+|++..|+|+++|+.||+|++..|+.|+.||++||||||+|++.++|.+|++. -+-.|+||+..|..+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 357999999999999999999999999999999999999999999999999999999999965 4556899999999876
Q ss_pred C
Q 020844 112 K 112 (320)
Q Consensus 112 ~ 112 (320)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=145.93 Aligned_cols=212 Identities=19% Similarity=0.290 Sum_probs=159.2
Q ss_pred hccccCcccCCCceEEEecccCCCC--------------------cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE
Q 020844 3 ILSLNGRHLFGQPIKVNWAYASGQR--------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD 62 (320)
Q Consensus 3 i~~l~g~~~~g~~i~v~~~~~~~~~--------------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~ 62 (320)
...+++..+.|.++++........- .......++||++||...+++++++++..||.+..
T Consensus 239 ~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~ 318 (500)
T KOG0120|consen 239 AMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA 318 (500)
T ss_pred hhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh
Confidence 3568889999999999876532211 12334678999999999999999999999999999
Q ss_pred EEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCC
Q 020844 63 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKET 142 (320)
Q Consensus 63 v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (320)
.+++.|..+|.++||||.+|.+......|+..|||..+.+++|.|..+-.....................
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~---------- 388 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIP---------- 388 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccch----------
Confidence 9999999999999999999999999999999999999999999999887654433322220000000000
Q ss_pred CCCCCCCCCCcceEEEECCCC--ccC-c-------HHHHHHHHhccCCccEEEEEeeCC---------CcEEEEEeCCHH
Q 020844 143 TNTEAPENNPQYTTVYVGNLA--PEV-T-------QLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHA 203 (320)
Q Consensus 143 ~~~~~~~~~~~~~~l~V~nl~--~~~-t-------~~~l~~~F~~~G~~~i~~~~~~~~---------~g~afV~f~~~~ 203 (320)
.........+...|...|+- .++ + -++++..|++|| .|..|.+.++ -|..||+|.+.+
T Consensus 389 -~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~e 465 (500)
T KOG0120|consen 389 -LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTE 465 (500)
T ss_pred -hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChH
Confidence 00011222233445544441 122 1 145778888999 9999999887 478999999999
Q ss_pred HHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 204 EAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 204 ~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++++|+++|+|. .|+|+.+..+|-
T Consensus 466 d~qrA~~~L~Gr---KF~nRtVvtsYy 489 (500)
T KOG0120|consen 466 DSQRAMEELTGR---KFANRTVVASYY 489 (500)
T ss_pred HHHHHHHHccCc---eeCCcEEEEEec
Confidence 999999999999 999999999884
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=145.46 Aligned_cols=191 Identities=23% Similarity=0.305 Sum_probs=137.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....+.++|+|||..+..++|..+|..||.|..+.+++ .|. -++|+|.++.+|..|.+.|....+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 34467899999999999999999999999999985542 222 489999999999999999999999999999988
Q ss_pred ccCCCCCCCcccCCccc-cccc-----cCCCCCCCC-----CCCCCC---CCC-CCCCcceEEEECCCCccCcHHHHHHH
Q 020844 110 ATKGAGNNEDKQSSDAK-SVVE-----LTNGSSEDG-----KETTNT---EAP-ENNPQYTTVYVGNLAPEVTQLDLHRH 174 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~-----~~~~~~---~~~-~~~~~~~~l~V~nl~~~~t~~~l~~~ 174 (320)
+....-........... .... ......... .....+ ... ......++|||.||+++++.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 75433221110000000 0000 000000000 000000 000 11112233999999999999999999
Q ss_pred HhccCCccEEEEEeeCCC---------cEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020844 175 FHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 175 F~~~G~~~i~~~~~~~~~---------g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
|...| .|.++.|...+ |||||+|.+.++|..|+..|+|+ .++|+.|.|+++.
T Consensus 536 F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt---vldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT---VLDGHKLELKISE 596 (725)
T ss_pred HHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc---eecCceEEEEecc
Confidence 99999 89998876442 99999999999999999999999 9999999999987
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=7.6e-17 Score=118.49 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
....+++|||+||++.++||.|.++|+++|+|..|.+=.|+.+....|||||+|.+.++|..|+..++++.+..++|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 020844 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
|...-
T Consensus 112 ~D~GF 116 (153)
T KOG0121|consen 112 WDAGF 116 (153)
T ss_pred ccccc
Confidence 86543
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.68 E-value=7.3e-17 Score=125.93 Aligned_cols=114 Identities=33% Similarity=0.612 Sum_probs=101.3
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE-EEEeecCCCCCccceEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFV 80 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV 80 (320)
||+.||...+-|+||+|..+. ........+.++||+||.++++|..|.+.|+.||.|.+ -+|+++..||.++|||||
T Consensus 67 Aikiln~VkLYgrpIrv~kas--~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i 144 (203)
T KOG0131|consen 67 AIKILNMVKLYGRPIRVNKAS--AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFI 144 (203)
T ss_pred HHHHHHHHHhcCceeEEEecc--cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEE
Confidence 899999999999999999997 22233344589999999999999999999999999865 488999999999999999
Q ss_pred EecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCC
Q 020844 81 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 117 (320)
Q Consensus 81 ~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 117 (320)
.|.+.|.+.+|++.++|+.+..+++.|.++..+....
T Consensus 145 ~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 145 NYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred echhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999998765444
No 54
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=6.4e-18 Score=131.62 Aligned_cols=86 Identities=28% Similarity=0.524 Sum_probs=80.6
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+++.-|||+|||++.||.||.-+|+.||+|.+|.+++|+.||+++||||+.|++..+..-|++.|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCC
Q 020844 111 TKGAGN 116 (320)
Q Consensus 111 ~~~~~~ 116 (320)
.....+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 655444
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=7.3e-16 Score=121.23 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=70.3
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+||+.++++++|+++|++|| .|.++.+..+ +|||||+|.+.++|+.|++.||+. .|+|+.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~---~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK---ELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEE
Confidence 347899999999999999999999999 9999988744 799999999999999999999999 99999999
Q ss_pred EEecCCC
Q 020844 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|+|++.+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998754
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.68 E-value=3.3e-16 Score=108.19 Aligned_cols=70 Identities=33% Similarity=0.671 Sum_probs=65.2
Q ss_pred EEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020844 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 36 l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
|||+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999874
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=2.5e-15 Score=131.73 Aligned_cols=144 Identities=27% Similarity=0.424 Sum_probs=111.3
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
.++|||+|||+++|+++|+++|..||.|..+.+..|+.++.++|||||+|.+.++|..|++.+++..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999754
Q ss_pred --CCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC
Q 020844 113 --GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190 (320)
Q Consensus 113 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~ 190 (320)
......... ...... ................+++.+++..++..++...|..+| .+....+..
T Consensus 195 ~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 259 (306)
T COG0724 195 ASQPRSELSNN-----LDASFA--------KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG--DIVRASLPP 259 (306)
T ss_pred ccccccccccc-----cchhhh--------ccccccccccccccceeeccccccccchhHHHHhccccc--cceeeeccC
Confidence 111100000 000000 000111122233447899999999999999999999999 676666554
Q ss_pred C
Q 020844 191 D 191 (320)
Q Consensus 191 ~ 191 (320)
.
T Consensus 260 ~ 260 (306)
T COG0724 260 S 260 (306)
T ss_pred C
Confidence 4
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5e-16 Score=120.51 Aligned_cols=79 Identities=30% Similarity=0.496 Sum_probs=72.9
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
..++|||+||+.++++.||...|..||.|.+|+|-+. .-|||||||+++.||+.|+..|+|..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999999775 45899999999999999999999999999999999987
Q ss_pred CCCC
Q 020844 112 KGAG 115 (320)
Q Consensus 112 ~~~~ 115 (320)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=128.41 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
.++|||+|||+++||++|+++|+.||.|.+|+|++|+. ++|||||+|++.++|..|+ .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 6999999999999998765
Q ss_pred C
Q 020844 113 G 113 (320)
Q Consensus 113 ~ 113 (320)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.3e-15 Score=127.59 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=80.2
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+-+||||+-|+.+++|.+|+..|+.||+|+.|+|++|+.||+++|||||+|+++.+...|....+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 020844 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
+-...
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86543
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=5.9e-16 Score=123.15 Aligned_cols=87 Identities=30% Similarity=0.496 Sum_probs=81.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
.+.+.-..|.|-||.+.+|.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|++|++.|+|.+|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 020844 108 NWATKGA 114 (320)
Q Consensus 108 ~~a~~~~ 114 (320)
+++.-..
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 9886543
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=7.6e-15 Score=103.97 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=75.1
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
-++..++-|||+|||+++|.|++.++|.+||.|..|+|=- +...+|-|||.|++..+|.+|++.|+|..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3556688999999999999999999999999999999964 4557899999999999999999999999999999999
Q ss_pred EeccCC
Q 020844 108 NWATKG 113 (320)
Q Consensus 108 ~~a~~~ 113 (320)
.+-.+.
T Consensus 90 lyyq~~ 95 (124)
T KOG0114|consen 90 LYYQPE 95 (124)
T ss_pred EecCHH
Confidence 987653
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=125.89 Aligned_cols=101 Identities=27% Similarity=0.419 Sum_probs=94.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||..|||..|.|..|.|.-++++ ++.+++|+|+||.+.|+.+||++.|++||+|.++.|++| |+||.
T Consensus 52 airNLhgYtLhg~nInVeaSksK-----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh 118 (346)
T KOG0109|consen 52 AIRNLHGYTLHGVNINVEASKSK-----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVH 118 (346)
T ss_pred HHhhcccceecceEEEEEecccc-----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEE
Confidence 78899999999999999999876 457889999999999999999999999999999999977 99999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020844 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
|...++|..|++.|++.++.|++++|+.+++.-.
T Consensus 119 ~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 119 FDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred EeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 9999999999999999999999999999887544
No 64
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.4e-15 Score=110.20 Aligned_cols=85 Identities=24% Similarity=0.445 Sum_probs=80.0
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
...-.|||.++...+||++|.+.|..||+|.++.+..|+.||..||||+|+|++.++|+.|++.+||..+.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 020844 111 TKGAG 115 (320)
Q Consensus 111 ~~~~~ 115 (320)
..+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76543
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=120.06 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=71.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
..++|||+||++++||++|+++|+.||+|.+|+|++|. ..+|||||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 45689999999999999999 899999999999998765
Q ss_pred CC
Q 020844 112 KG 113 (320)
Q Consensus 112 ~~ 113 (320)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=7.9e-15 Score=130.61 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCH--HHHHHHHHHhCCCeeCCeeEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~--~~A~~A~~~l~~~~~~g~~l~ 106 (320)
......+||||||++++|++||+.+|..||.|.+|.|+++ +| ||||||+|.+. .++.+|+..|||..+.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3455789999999999999999999999999999999954 67 99999999987 789999999999999999999
Q ss_pred EEeccC
Q 020844 107 CNWATK 112 (320)
Q Consensus 107 v~~a~~ 112 (320)
|..+.+
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 998854
No 67
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.57 E-value=3.1e-15 Score=135.97 Aligned_cols=82 Identities=30% Similarity=0.620 Sum_probs=78.8
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
+.|||||+|++++|++|.++|+..|.|.+++++.|+.||+.+||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CC
Q 020844 114 AG 115 (320)
Q Consensus 114 ~~ 115 (320)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 68
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.2e-15 Score=121.01 Aligned_cols=85 Identities=33% Similarity=0.519 Sum_probs=81.1
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
...|+|||++|..++||.-|...|=+||.|.+|+++.|-.++++||||||+|...|||..|++.||+..+.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020844 111 TKGAG 115 (320)
Q Consensus 111 ~~~~~ 115 (320)
.+.+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87653
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=1.8e-13 Score=119.42 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=136.8
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEe
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNW 109 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~ 109 (320)
.-.+++|.|+-+.+|-|-|..+|++||.|..|.-+.. + +.--|+|.|.+.+.|..|...|+|+.|. -+.|++.|
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-n---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-N---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-c---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 4468899999999999999999999999988766543 2 3336899999999999999999999873 35788888
Q ss_pred ccCCCCC------CCcccCCcccccccc-----------------CCCCC---CCCCCCCCCCCCCCC-C-cceEEEECC
Q 020844 110 ATKGAGN------NEDKQSSDAKSVVEL-----------------TNGSS---EDGKETTNTEAPENN-P-QYTTVYVGN 161 (320)
Q Consensus 110 a~~~~~~------~~~~~~~~~~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~-~-~~~~l~V~n 161 (320)
+.-..-. +++.......+.... ..+.. ............... + .+..|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 7432111 111111110000000 00000 000000000000111 1 257889999
Q ss_pred CCc-cCcHHHHHHHHhccCCccEEEEEeeCCC-cEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 162 LAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 162 l~~-~~t~~~l~~~F~~~G~~~i~~~~~~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
|.. .+|.+.|..+|+-|| .|..|+|+.++ -.|+|+|.+...|..|++.|+|. .+.|++|+|.+++..
T Consensus 305 ln~~~VT~d~LftlFgvYG--dVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~---~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYG--DVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGH---KLYGKKLRVTLSKHT 373 (492)
T ss_pred CchhccchhHHHHHHhhhc--ceEEEEeeecCCcceeeeecchhHHHHHHHHhhcc---eecCceEEEeeccCc
Confidence 977 579999999999999 99999999875 47999999999999999999999 999999999998754
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=2.6e-14 Score=98.42 Aligned_cols=72 Identities=39% Similarity=0.735 Sum_probs=67.7
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
+|||+|||..+++++|+++|..||.|..+.+.+++ +.++|+|||+|.+.++|.+|++.+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999875 7889999999999999999999999999999998873
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=2.3e-13 Score=119.61 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=67.9
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..++||.||.+.+..+.|++.|.--|.|+.+.+-.|| .|.++|||.++|..+-+|..||..+++.-+..++..+..
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 4589999999999999999999999999999999897 589999999999999999999988887776666666555
No 72
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.7e-14 Score=127.04 Aligned_cols=104 Identities=24% Similarity=0.407 Sum_probs=90.3
Q ss_pred ccC-cccCCCceEEEecccCCCCcCCCC--ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEe
Q 020844 6 LNG-RHLFGQPIKVNWAYASGQREDTSG--HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82 (320)
Q Consensus 6 l~g-~~~~g~~i~v~~~~~~~~~~~~~~--~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f 82 (320)
|+| ..+.|..|.|+|+.+.+....+.- -.-|||+||+.++|||.|+++|+.||.|+.|+.++| ||||.|
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf 300 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHF 300 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEee
Confidence 455 466789999999988776544322 247999999999999999999999999999999977 999999
Q ss_pred cCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCC
Q 020844 83 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 117 (320)
Q Consensus 83 ~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 117 (320)
.+.++|.+|++.+||+.|.|..|.|.++++.....
T Consensus 301 ~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 301 AEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred cchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999999999999999998765443
No 73
>smart00360 RRM RNA recognition motif.
Probab=99.54 E-value=3.5e-14 Score=97.36 Aligned_cols=71 Identities=38% Similarity=0.713 Sum_probs=67.2
Q ss_pred EcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 38 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 38 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 58999999999999999999999999999988789999999999999999999999999999999998873
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.6e-14 Score=97.69 Aligned_cols=65 Identities=35% Similarity=0.717 Sum_probs=61.2
Q ss_pred EEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
|||+|||.++++++|+++|++|| .+..+.+.++ +++|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~---~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG--KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK---KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS--TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh--hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC---EECccCcC
Confidence 79999999999999999999999 8888888773 789999999999999999999999 99999886
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.8e-13 Score=115.21 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=68.3
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
++|||+||++++++++|+++|+.|| .|.++.+.++ +|||||+|.++++|..|+. ||+. .|.|+.|+|.++.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G--~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~---~l~gr~V~Vt~a~ 78 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSG--DIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGA---TIVDQSVTITPAE 78 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCC---eeCCceEEEEecc
Confidence 7899999999999999999999999 9999999876 6899999999999999995 9999 9999999999986
Q ss_pred CC
Q 020844 232 KP 233 (320)
Q Consensus 232 ~~ 233 (320)
.-
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=6.1e-14 Score=109.04 Aligned_cols=75 Identities=29% Similarity=0.516 Sum_probs=69.5
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.++|||+||+..+++.||+..|..|| .+..|.+-+. .|||||+|++..+|+.|+..|+|. .|.|..|+|++++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG--~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~---~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYG--PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGK---DICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcC--cceeEEEeecCCCceEEeccCcccHHHHHhhcCCc---cccCceEEEEeecC
Confidence 37899999999999999999999999 8888888765 799999999999999999999999 99999999999764
Q ss_pred C
Q 020844 233 P 233 (320)
Q Consensus 233 ~ 233 (320)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 4
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=8.5e-14 Score=118.26 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
..-++|+|.|||+..-|.||+.+|++|| .|.||.|+-+ |||+||+|++.+||++|-++|||. .+.||+|.|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG--~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt---~VEGRkIEV 168 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFG--KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGT---VVEGRKIEV 168 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhC--ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcc---eeeceEEEE
Confidence 3448899999999999999999999999 9999988743 899999999999999999999999 999999999
Q ss_pred EecCCC
Q 020844 228 SWGSKP 233 (320)
Q Consensus 228 ~~a~~~ 233 (320)
+.++..
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998654
No 78
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=2.6e-13 Score=93.87 Aligned_cols=74 Identities=38% Similarity=0.756 Sum_probs=69.0
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+|+|+|||..+++++|+++|..||.|..+.+..++. +.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998864 47899999999999999999999999999999998864
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=5.4e-14 Score=121.63 Aligned_cols=212 Identities=17% Similarity=0.117 Sum_probs=138.2
Q ss_pred cccCCCceEEEecccCCCC------------c-CCCCceeEEEcCCCccCcHHHHHHHhccC----CCeeEEEEeecCCC
Q 020844 9 RHLFGQPIKVNWAYASGQR------------E-DTSGHFNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKT 71 (320)
Q Consensus 9 ~~~~g~~i~v~~~~~~~~~------------~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~ 71 (320)
..++++.|.|-.+...+-- - ....--.|.+++||++||+.|+.++|.+- |..+.|.+++. .+
T Consensus 124 hh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pd 202 (508)
T KOG1365|consen 124 HHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PD 202 (508)
T ss_pred hhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CC
Confidence 3455677777665443210 1 11223467889999999999999999632 34556666665 48
Q ss_pred CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 020844 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENN 151 (320)
Q Consensus 72 g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (320)
|+.+|-|||.|..+++|+.|+.. |...++-|.|.+..++..+-...-...... ++. +......-...+.......
T Consensus 203 grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~-pLi---~~~~sp~~p~~p~~~~p~~ 277 (508)
T KOG1365|consen 203 GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE-PLI---PGLTSPLLPGGPARLVPPT 277 (508)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc-ccc---CCCCCCCCCCCccccCCCC
Confidence 99999999999999999999966 666677777888766543221111110000 000 0000000000011111112
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEE--EEee-----CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020844 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--VRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~--~~~~-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
....+|.+++||++.+.++|.++|..|- ..|.. |.+. +..|.|||+|.++|+|..|....|++ ....|.
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~---~mk~RY 353 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK---LMKSRY 353 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh---hcccce
Confidence 2257899999999999999999999985 24443 4433 44799999999999999999998888 667888
Q ss_pred eEEEec
Q 020844 225 MKCSWG 230 (320)
Q Consensus 225 l~v~~a 230 (320)
|.|--+
T Consensus 354 iEvfp~ 359 (508)
T KOG1365|consen 354 IEVFPC 359 (508)
T ss_pred EEEeec
Confidence 887544
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.1e-14 Score=102.40 Aligned_cols=73 Identities=30% Similarity=0.440 Sum_probs=67.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
.+++|||+||+..++|+.|.++|+++| .|..|.+.-+ -|||||+|.+.++|..|++-++++ .++.++|+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG--~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt---rLddr~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCG--DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT---RLDDRPIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhcc--chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC---ccccccee
Confidence 348999999999999999999999999 8888888755 489999999999999999999999 99999999
Q ss_pred EEec
Q 020844 227 CSWG 230 (320)
Q Consensus 227 v~~a 230 (320)
+.|.
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9985
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=95.49 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=68.0
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++.|||.|||+++|.++..++|.+|| .|..+++.-. +|-|||.|++..+|.+|+..|+|. .+.++.|.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg--~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~---n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYG--TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY---NVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhccc--ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc---ccCCceEEEEec
Confidence 37899999999999999999999999 9999999865 899999999999999999999999 999999999874
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=4.1e-13 Score=109.41 Aligned_cols=76 Identities=33% Similarity=0.542 Sum_probs=66.7
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee------CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020844 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
+...++||||+|+++++.++|+++|++|| +|++..+. |+|||+||+|.|.++|.+|++..|-. |+||+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfG--eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi----IdGR~ 82 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFG--EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI----IDGRK 82 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhC--ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc----ccccc
Confidence 44568999999999999999999999999 88888776 44899999999999999999875544 99999
Q ss_pred eEEEecCC
Q 020844 225 MKCSWGSK 232 (320)
Q Consensus 225 l~v~~a~~ 232 (320)
..|+.+.-
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 99998754
No 83
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.44 E-value=2.4e-12 Score=111.27 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=131.9
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh--CCCeeCCeeEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL--TGKWLGSRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l--~~~~~~g~~l~ 106 (320)
...++--|.|++|-..++|.||.+.++.||.|..+..+..+ ..|.|+|++.+.|+.++.-. +...+.|..-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 45667899999999999999999999999999988776554 37999999999999998432 33466888888
Q ss_pred EEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEEC--CCCccCcHHHHHHHHhccCCccEE
Q 020844 107 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG--NLAPEVTQLDLHRHFHSLGAGVIE 184 (320)
Q Consensus 107 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~--nl~~~~t~~~l~~~F~~~G~~~i~ 184 (320)
+.+++.+.-.+.. +++..+++.|.+. |--+.+|-+.|..++.+.| .|.
T Consensus 101 ~NyStsq~i~R~g----------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~G--kVl 150 (494)
T KOG1456|consen 101 FNYSTSQCIERPG----------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQG--KVL 150 (494)
T ss_pred cccchhhhhccCC----------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCC--ceE
Confidence 8887654322211 2223334555554 4455789999999999999 999
Q ss_pred EEEeeCCCc-EEEEEeCCHHHHHHHHHHcCCCCccccc-C-eEeEEEecCCC
Q 020844 185 EVRVQRDKG-FGFVRYSTHAEAALAIQMGNTTQSSYLF-G-KQMKCSWGSKP 233 (320)
Q Consensus 185 ~~~~~~~~g-~afV~f~~~~~A~~A~~~l~~~~~~~~~-g-~~l~v~~a~~~ 233 (320)
.|.|.+..| .|.|+|++.+.|.+|...|||. .|. | +.|+|.|+++.
T Consensus 151 RIvIfkkngVQAmVEFdsv~~AqrAk~alNGA---DIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 151 RIVIFKKNGVQAMVEFDSVEVAQRAKAALNGA---DIYSGCCTLKIEYAKPT 199 (494)
T ss_pred EEEEEeccceeeEEeechhHHHHHHHhhcccc---cccccceeEEEEecCcc
Confidence 999988766 6999999999999999999999 554 4 89999999875
No 84
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=8.5e-13 Score=90.82 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=56.0
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeecCCC--CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 47 DATLFACFS----VYPSCSDAR-VMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 47 e~~l~~~F~----~~G~i~~v~-i~~~~~~--g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
+++|+++|+ +||.|.++. |+.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777666 899999999999999999999999999999999986
No 85
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=7.9e-13 Score=108.17 Aligned_cols=76 Identities=32% Similarity=0.450 Sum_probs=71.0
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|-|.||+.++++++|+++|.+|| .|..+.+.++ ||||||.|++.++|.+|++.|||. -+++=.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg--~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~---gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG--PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY---GYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC--ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc---ccceEEEE
Confidence 557899999999999999999999999 8999988876 799999999999999999999999 88899999
Q ss_pred EEecCCC
Q 020844 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|.|+++.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999764
No 86
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=1.3e-12 Score=85.76 Aligned_cols=56 Identities=32% Similarity=0.657 Sum_probs=51.1
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 50 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 50 l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
|+++|++||+|.++.+..++ +++|||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997653 689999999999999999999999999999999985
No 87
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=9.6e-13 Score=90.69 Aligned_cols=65 Identities=34% Similarity=0.692 Sum_probs=59.3
Q ss_pred EEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
|||+|||+++++++|+++|+.|| .|..+.+.++ +++|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g--~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~---~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG--PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGK---EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS--BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCc---EECCEEcC
Confidence 79999999999999999999999 8999999877 689999999999999999999989 99999875
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.40 E-value=5.3e-11 Score=103.03 Aligned_cols=195 Identities=15% Similarity=0.158 Sum_probs=139.1
Q ss_pred CCCCceeEEEc--CCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC--Cee
Q 020844 29 DTSGHFNIFVG--DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQ 104 (320)
Q Consensus 29 ~~~~~~~l~V~--nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~--g~~ 104 (320)
...++.-|.+. |-=+.+|-|-|..++.+.|.|..|.|++. +|. .|.|||++.+.|++|.+.|||..|. -+.
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccccee
Confidence 33444444444 44467999999999999999999999865 454 7999999999999999999999873 468
Q ss_pred EEEEeccCCCCCCCcccC--------------Ccccc---------cc-----ccCCCCCC-------------------
Q 020844 105 IRCNWATKGAGNNEDKQS--------------SDAKS---------VV-----ELTNGSSE------------------- 137 (320)
Q Consensus 105 l~v~~a~~~~~~~~~~~~--------------~~~~~---------~~-----~~~~~~~~------------------- 137 (320)
|+|+|+++..-.-..... .+... .. ....+...
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 999999764321100000 00000 00 00000000
Q ss_pred CCCCCCCCCCCCCCCcceEEEECCCCcc-CcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 138 DGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
..........+....+.+.+-|-+|+.. +.-+.|..+|..|| .|+.|++++. .|-|.|++.+..+.++|+..||+.
T Consensus 271 ~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 271 GYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC
Confidence 0000011122344556788999999985 57888999999999 9999999988 589999999999999999999999
Q ss_pred CcccccCeEeEEEecCCC
Q 020844 216 QSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 216 ~~~~~~g~~l~v~~a~~~ 233 (320)
.+.|.+|.|.+++..
T Consensus 349 ---~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 349 ---PLFGGKLNVCVSKQN 363 (494)
T ss_pred ---ccccceEEEeecccc
Confidence 899999999887654
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=5.9e-13 Score=106.16 Aligned_cols=77 Identities=29% Similarity=0.488 Sum_probs=71.6
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
-..|.|.||.+.++.++|+.+|++|| .|-+|.|+++ +|||||.|.+..+|+.|++.|+|. .++|+.|+|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~---~ldgRelrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA---VLDGRELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcce---eeccceeee
Confidence 37899999999999999999999999 9999999987 799999999999999999999999 999999999
Q ss_pred EecCCCCC
Q 020844 228 SWGSKPTP 235 (320)
Q Consensus 228 ~~a~~~~~ 235 (320)
++|+-..+
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 98865433
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.4e-12 Score=116.51 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=69.9
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--CcEEEEEeCCH--HHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTH--AEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--~g~afV~f~~~--~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
..+||||||++++++++|+.+|+.|| .|.++.|+|. ||||||+|.+. .++.+|++.|||. .+.|+.|+|..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFG--sVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGA---EWKGR~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMG--TVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGC---VWKGGRLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCC---eecCceeEEee
Confidence 37899999999999999999999999 9999999976 89999999987 7899999999999 99999999998
Q ss_pred cCCC
Q 020844 230 GSKP 233 (320)
Q Consensus 230 a~~~ 233 (320)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8763
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.39 E-value=1.2e-11 Score=110.66 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=137.4
Q ss_pred ccCcccCCCceEEEecccCCC--------CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE-EEEeecCCCCCccc
Q 020844 6 LNGRHLFGQPIKVNWAYASGQ--------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRG 76 (320)
Q Consensus 6 l~g~~~~g~~i~v~~~~~~~~--------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~G 76 (320)
.|...+..+=|.|--+..... .........|.+++||+.|||+||.++|+..-.+.. |.++.++ .+++.|
T Consensus 68 kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tG 146 (510)
T KOG4211|consen 68 KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTG 146 (510)
T ss_pred hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCccc
Confidence 556667777788776643221 122245678999999999999999999998765555 5566664 688999
Q ss_pred eEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccC-----------C--cccc---cccc---------
Q 020844 77 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQS-----------S--DAKS---VVEL--------- 131 (320)
Q Consensus 77 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~-----------~--~~~~---~~~~--------- 131 (320)
-|||.|++.+.|+.|+.. |...|..|.|.|..+............ . .... ....
T Consensus 147 EAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r 225 (510)
T KOG4211|consen 147 EAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATR 225 (510)
T ss_pred ceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccc
Confidence 999999999999999955 677788888999877432211110000 0 0000 0000
Q ss_pred -----------------C----------------CCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhcc
Q 020844 132 -----------------T----------------NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178 (320)
Q Consensus 132 -----------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 178 (320)
. +..+....................++..+||.+.++.+|..+|+..
T Consensus 226 ~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl 305 (510)
T KOG4211|consen 226 YGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL 305 (510)
T ss_pred cccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC
Confidence 0 0000000000000001111223778899999999999999999987
Q ss_pred CCccEEEEEee---CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 179 GAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 179 G~~~i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
-+ --..+.+. +..|-|+|+|.+.++|..|+.. ++. .+..+-+.+-.
T Consensus 306 ~p-~~v~i~ig~dGr~TGEAdveF~t~edav~Amsk-d~a---nm~hrYVElFl 354 (510)
T KOG4211|consen 306 NP-YRVHIEIGPDGRATGEADVEFATGEDAVGAMGK-DGA---NMGHRYVELFL 354 (510)
T ss_pred Cc-eeEEEEeCCCCccCCcceeecccchhhHhhhcc-CCc---ccCcceeeecc
Confidence 42 12223333 3378999999999999999975 555 67776666543
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.5e-13 Score=105.94 Aligned_cols=82 Identities=35% Similarity=0.572 Sum_probs=75.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++||||+|..+++|..|...|=+|| .|.++.++-+ |||+||+|...|+|..|+..||+. ++.||.|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFG--DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes---EL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFG--DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES---ELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccccc--chhhcccccchhcccccceeEEEeeccchhHHHhhcCchh---hhcceeEEE
Confidence 38999999999999999999999999 9999999844 899999999999999999999999 999999999
Q ss_pred EecCCCCCCCCCC
Q 020844 228 SWGSKPTPPGTSS 240 (320)
Q Consensus 228 ~~a~~~~~~~~~~ 240 (320)
+++++......+.
T Consensus 85 N~AkP~kikegsq 97 (298)
T KOG0111|consen 85 NLAKPEKIKEGSQ 97 (298)
T ss_pred eecCCccccCCCC
Confidence 9998876655444
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.9e-12 Score=101.50 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=68.6
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
.++|||+|||.++-+.+|+++|.+|| .|.+|.+... ..||||+|++..+|+.|+..-++. .++|++|+|.|+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg--~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGY---dydg~rLRVEfp 80 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYG--RIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGY---DYDGCRLRVEFP 80 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhc--ceEEEEeccCCCCCCeeEEEecCccchhhhhhccccc---ccCcceEEEEec
Confidence 37899999999999999999999999 8888887644 569999999999999999999999 999999999998
Q ss_pred CCC
Q 020844 231 SKP 233 (320)
Q Consensus 231 ~~~ 233 (320)
...
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 654
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=5.2e-12 Score=104.75 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=66.6
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
..+|||+||++++|+++|+++|+.|| .|.+|++.++ +++|||+|+++++|..|+ .|+|. .|.+++|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G--~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa---~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCG--AIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGA---TIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcC--CeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCC---eeCCceEEEEeC
Confidence 37899999999999999999999999 9999999987 579999999999999998 79999 999999998864
Q ss_pred C
Q 020844 231 S 231 (320)
Q Consensus 231 ~ 231 (320)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=6.7e-12 Score=86.16 Aligned_cols=68 Identities=40% Similarity=0.702 Sum_probs=63.5
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCC----cEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK----GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~----g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
+|||+|||..+++++|+++|++|| .+..+.+.+++ ++|||+|.+.++|..|++.+++. .+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g--~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~---~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG--PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGT---KLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCc---EECCEEEeeC
Confidence 489999999999999999999999 89999988875 99999999999999999999999 8999998874
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=6.6e-12 Score=82.40 Aligned_cols=55 Identities=27% Similarity=0.559 Sum_probs=51.8
Q ss_pred HHHHHhccCCccEEEEEeeCCC-cEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 171 LHRHFHSLGAGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 171 l~~~F~~~G~~~i~~~~~~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
|+++|++|| .|..+.+.+++ ++|||+|.+.++|..|++.||+. .++|++|+|+|+
T Consensus 1 L~~~f~~fG--~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~---~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGR---QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTS---EETTEEEEEEEE
T ss_pred ChHHhCCcc--cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEC
Confidence 689999999 99999999987 99999999999999999999999 999999999985
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.1e-11 Score=107.50 Aligned_cols=161 Identities=22% Similarity=0.294 Sum_probs=112.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCC-C--CCccc---eEEEEecCHHHHHHHHHHhCCCeeCC
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK-T--GRSRG---FGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~--g~~~G---~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
...-+++|||++||++++|+.|...|..||.+. |......+ . -..+| |+|+.|+++.++..-+.++.- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 345689999999999999999999999999885 44442111 1 13566 999999999999988876543 33
Q ss_pred eeEEEEeccCCCCCCC----cccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHh-c
Q 020844 103 RQIRCNWATKGAGNNE----DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH-S 177 (320)
Q Consensus 103 ~~l~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~-~ 177 (320)
....+..+.+...... .....+..-+.. ....-.+.+|||||+||.-++.++|-.+|+ -
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~l 394 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL 394 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHh
Confidence 3444433333222111 111111111100 111223448999999999999999999999 8
Q ss_pred cCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHH
Q 020844 178 LGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQM 211 (320)
Q Consensus 178 ~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~ 211 (320)
|| .|..+.|.-| +|-|-|+|.+..+-.+||++
T Consensus 395 yG--gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 395 FG--GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cC--ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99 7777777655 79999999999999999974
No 98
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=2.8e-12 Score=106.19 Aligned_cols=87 Identities=30% Similarity=0.478 Sum_probs=81.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
+..+.++|||-.||.+.++.||...|.+||.|.+.+|+.|+.|+.+|-|+||.|.++.+|+.||..|||..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 020844 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
..+++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8776543
No 99
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.30 E-value=9.6e-12 Score=99.59 Aligned_cols=86 Identities=16% Similarity=0.354 Sum_probs=78.9
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccC-CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.......-++|..+|.-+.|.++..+|..| |.+..+++-|++.||.|+|||||+|++++.|.-|-+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 445556789999999999999999999998 8888899989999999999999999999999999999999999999999
Q ss_pred EEeccCC
Q 020844 107 CNWATKG 113 (320)
Q Consensus 107 v~~a~~~ 113 (320)
|++--+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987664
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=6.9e-12 Score=114.93 Aligned_cols=180 Identities=20% Similarity=0.287 Sum_probs=135.3
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccC-----------C-CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCC
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVY-----------P-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 97 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-----------G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~ 97 (320)
....++++|+++|+.++|+.+-.+|..- | .+..+.+..++ .|||++|.+.++|..++ .+++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-cccc
Confidence 3457899999999999999999998643 2 26667666554 49999999999999999 8899
Q ss_pred CeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhc
Q 020844 98 KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS 177 (320)
Q Consensus 98 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 177 (320)
..+.|+++++.............-.. .....-......+......+.+||++||..++++.++++.+.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~------------~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSP------------SQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred hhhCCCCceecccccccCCccchhhh------------ccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 99999999887554432221111000 000001111112222334478999999999999999999999
Q ss_pred cCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 178 LGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 178 ~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
|| .+....+..+ +||||++|.+......|+..|||. .++++.|.|..+-..
T Consensus 313 fg--~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm---~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 313 FG--PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGM---QLGDKKLVVQRAIVG 369 (500)
T ss_pred cc--cchhheeecccccccccceeeeeeeCCcchhhhhcccchh---hhcCceeEeehhhcc
Confidence 99 7777776654 899999999999999999999999 999999999987543
No 101
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=102.91 Aligned_cols=76 Identities=24% Similarity=0.478 Sum_probs=71.1
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020844 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.+||||+-|+++++|.+|+..|+.|| .|+.|+++++ +|||||+|+++.+...|....+|. .|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG--~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~---~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYG--PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI---KIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcC--cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc---eecCcEE
Confidence 5669999999999999999999999999 9999999877 799999999999999999999999 9999999
Q ss_pred EEEecCC
Q 020844 226 KCSWGSK 232 (320)
Q Consensus 226 ~v~~a~~ 232 (320)
.|.+-.-
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 9987543
No 102
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=9.3e-12 Score=118.49 Aligned_cols=164 Identities=19% Similarity=0.324 Sum_probs=138.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
.+...+++||++||+..+++.+|+..|..+|.|.+|.|-+.+ -+.---|+||.|.+...+-.|+.++.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 355678999999999999999999999999999999886653 3455559999999999999999999888776555555
Q ss_pred EeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE
Q 020844 108 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187 (320)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~ 187 (320)
.+... ....++.+|+++|..++....|...|..|| .|..|.
T Consensus 446 glG~~-------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Id 486 (975)
T KOG0112|consen 446 GLGQP-------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIID 486 (975)
T ss_pred ccccc-------------------------------------ccccceeeccCCCCCCChHHHHHHHhhccC--cceeee
Confidence 44322 112237899999999999999999999999 888888
Q ss_pred eeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEecCCCC
Q 020844 188 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGSKPT 234 (320)
Q Consensus 188 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a~~~~ 234 (320)
+-+...|++|.|++...+..|+..|.+. .+++ ++++|.|+....
T Consensus 487 y~hgq~yayi~yes~~~aq~a~~~~rga---p~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 487 YRHGQPYAYIQYESPPAAQAATHDMRGA---PLGGPPRRLRVDLASPPG 532 (975)
T ss_pred cccCCcceeeecccCccchhhHHHHhcC---cCCCCCcccccccccCCC
Confidence 8888899999999999999999999999 8887 789999987653
No 103
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.25 E-value=1e-11 Score=102.29 Aligned_cols=106 Identities=34% Similarity=0.605 Sum_probs=91.2
Q ss_pred cCcccCCCceEEEecccCCCC---cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEec
Q 020844 7 NGRHLFGQPIKVNWAYASGQR---EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83 (320)
Q Consensus 7 ~g~~~~g~~i~v~~~~~~~~~---~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 83 (320)
+++.+.-.+|++....++.+. +-+..+.+||++.|..+++++-|-..|.+|-.....++++|+.||+++||+||.|.
T Consensus 161 ~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 161 EKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 456666667777766665543 23455779999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020844 84 NQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 84 ~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
+++|+..|+.+++|..++.|+|++.-+.-
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 99999999999999999999998875443
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2.6e-11 Score=90.32 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=72.7
Q ss_pred CCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020844 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 148 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
|..+...-.|||.++..+.++++|.+.|..|| +|+.+.+.-+ +||++|+|++.+.|..|+..+|+. .+.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyG--eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~---~ll 140 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYG--EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA---ELL 140 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcc--cccceeeccccccccccceeeeehHhHHHHHHHHHhccch---hhh
Confidence 33344457899999999999999999999999 8888877644 799999999999999999999999 999
Q ss_pred CeEeEEEecCCCCC
Q 020844 222 GKQMKCSWGSKPTP 235 (320)
Q Consensus 222 g~~l~v~~a~~~~~ 235 (320)
|..|.|.|+-.+.+
T Consensus 141 ~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 141 GQNVSVDWCFVKGP 154 (170)
T ss_pred CCceeEEEEEecCC
Confidence 99999999865544
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=9.6e-13 Score=124.59 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=139.9
Q ss_pred ccCcccCCCceEEEecccCCCCcCC-------CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE
Q 020844 6 LNGRHLFGQPIKVNWAYASGQREDT-------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 78 (320)
Q Consensus 6 l~g~~~~g~~i~v~~~~~~~~~~~~-------~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a 78 (320)
..|..+.++.+.|..+.++...+.. ....++||+||+..+.+.||...|.++|.+..+++...+++++.+|+|
T Consensus 633 pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~ 712 (881)
T KOG0128|consen 633 PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKA 712 (881)
T ss_pred ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccce
Confidence 4566677777777777665533221 334689999999999999999999999999998888777889999999
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 020844 79 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVY 158 (320)
Q Consensus 79 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (320)
||+|..++++.+|+.- +...+.|+ ..++
T Consensus 713 Y~~F~~~~~~~aaV~f-~d~~~~gK---------------------------------------------------~~v~ 740 (881)
T KOG0128|consen 713 YVEFLKPEHAGAAVAF-RDSCFFGK---------------------------------------------------ISVA 740 (881)
T ss_pred eeEeecCCchhhhhhh-hhhhhhhh---------------------------------------------------hhhh
Confidence 9999999999999944 44444441 4599
Q ss_pred ECCCCccCcHHHHHHHHhccCCccEEEEEeeC-----CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 159 VGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 159 V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
|.|.|+..|.++++.+|..+| .++++++.. .+|.++|.|.++.++.+++...+.. .+.-..+.|..+++.
T Consensus 741 i~g~pf~gt~e~~k~l~~~~g--n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~---~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 741 ISGPPFQGTKEELKSLASKTG--NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA---GKRENNGEVQVSNPE 815 (881)
T ss_pred eeCCCCCCchHHHHhhccccC--CccccchhhhhccccccceeccCCCcchhhhhcccchhh---hhhhcCccccccCCc
Confidence 999999999999999999999 888876653 3899999999999999999988888 677777777776553
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-11 Score=106.15 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=78.8
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.+...|||..|.+-+|.+||.-+|+.||.|.+|.|++|+.||.+--||||+|++.+++++|.-.|++..|..++|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 020844 111 TK 112 (320)
Q Consensus 111 ~~ 112 (320)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=7.8e-11 Score=81.23 Aligned_cols=69 Identities=39% Similarity=0.706 Sum_probs=64.2
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
+|+|+|||..+++++|+++|+.|| .|..+.+.++ +++|||+|.+.++|..|+..+++. .+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g--~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~---~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG--KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGK---ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC--CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEeC
Confidence 389999999999999999999999 8999888865 689999999999999999999999 89999999875
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=5.8e-11 Score=102.03 Aligned_cols=84 Identities=29% Similarity=0.517 Sum_probs=74.9
Q ss_pred CCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020844 146 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 146 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
-.+.++....+|||++|...+++.+|+++|.+|| +|+.+.+...+++|||+|.+.++|+.|.+..-+.. .|+|++|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~l--vI~G~Rl 295 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKL--VINGFRL 295 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecccccceeeehhhHHHHHHHHhhccee--eecceEE
Confidence 4456667789999999999999999999999999 99999999999999999999999999987654432 8999999
Q ss_pred EEEecCCC
Q 020844 226 KCSWGSKP 233 (320)
Q Consensus 226 ~v~~a~~~ 233 (320)
+|.|+++.
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999873
No 109
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.21 E-value=2.9e-11 Score=105.65 Aligned_cols=109 Identities=22% Similarity=0.392 Sum_probs=95.8
Q ss_pred cccCCCceEEEecccCCCCcCCC---CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCH
Q 020844 9 RHLFGQPIKVNWAYASGQREDTS---GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 85 (320)
Q Consensus 9 ~~~~g~~i~v~~~~~~~~~~~~~---~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 85 (320)
+.|.|+.|.+..+.++....... ...++||++||.+++|++++++|++||.|..+.++.|+.+.+++||+||.|.++
T Consensus 70 h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 70 HKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE 149 (311)
T ss_pred cccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc
Confidence 56889999999998887654333 367999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCC
Q 020844 86 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118 (320)
Q Consensus 86 ~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 118 (320)
+++.+++ ...-+.|.|+.+.|..+.++.....
T Consensus 150 ~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 150 DSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cccceec-ccceeeecCceeeEeeccchhhccc
Confidence 9999999 5577889999999999988765443
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=5.6e-11 Score=96.80 Aligned_cols=77 Identities=22% Similarity=0.431 Sum_probs=70.2
Q ss_pred ceEEEECCCCccCcHHHHHH----HHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 154 YTTVYVGNLAPEVTQLDLHR----HFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~----~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.||||.||+..+..++|+. +|++|| .|.+|...+. +|.|||.|++.+.|..|+..|+|. .+.|+.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG--~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gf---pFygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFG--KILDISAFKTPKMRGQAFVVFKETEAASAALRALQGF---PFYGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhC--CeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCC---cccCchhh
Confidence 35999999999999999887 999999 8888887755 899999999999999999999999 99999999
Q ss_pred EEecCCCCC
Q 020844 227 CSWGSKPTP 235 (320)
Q Consensus 227 v~~a~~~~~ 235 (320)
+.||+++..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999987643
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=3.9e-11 Score=112.63 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=73.4
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+|||||++|+.+++|.||+++|+.||+|.+|.++. ++|||||.+....+|.+|+..|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3589999999999999999999999999999999874 4579999999999999999999999999999999999
Q ss_pred cCCCCC
Q 020844 111 TKGAGN 116 (320)
Q Consensus 111 ~~~~~~ 116 (320)
..+...
T Consensus 493 ~g~G~k 498 (894)
T KOG0132|consen 493 VGKGPK 498 (894)
T ss_pred ccCCcc
Confidence 876443
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=3e-12 Score=103.07 Aligned_cols=134 Identities=24% Similarity=0.303 Sum_probs=112.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++|||.|+...++|+-|.++|-.-|+|..|.|..++ ++..| ||||+|+++-++.-|++-+||..+.++.+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc-
Confidence 3457899999999999999999999999999999999886 67777 99999999999999999999999999988876
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECC----CCccCcHHHHHHHHhccCCccEEE
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN----LAPEVTQLDLHRHFHSLGAGVIEE 185 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~G~~~i~~ 185 (320)
++.|+ |+..++++.+.+.|+.-| .++.
T Consensus 83 -----------------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~--p~~~ 113 (267)
T KOG4454|consen 83 -----------------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAG--PIEG 113 (267)
T ss_pred -----------------------------------------------cccCCCcchhhhhcchhhheeeecccC--CCCC
Confidence 34444 777889999999999998 7777
Q ss_pred EEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 186 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 186 ~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
+++.++ +.++|+++-.....-.++..-.+.
T Consensus 114 ~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 114 VRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 777643 668888887666666666655555
No 113
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.6e-10 Score=78.90 Aligned_cols=65 Identities=42% Similarity=0.684 Sum_probs=59.4
Q ss_pred ECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 159 VGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 159 V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
|+|||.++++++|+++|++|| .|..+.+.++ +|+|||+|.+.++|..|++.+++. .+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~---~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG--KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK---ELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC--CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC---eeCCcEEEeC
Confidence 579999999999999999999 8888888765 579999999999999999999999 8999998874
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.7e-10 Score=99.16 Aligned_cols=79 Identities=18% Similarity=0.388 Sum_probs=70.6
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh-CCCeeCCeeEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~ 106 (320)
..+..-.+|||++|-..++|.||+++|.+||+|+++.++..+ +||||+|.+.++|+.|.++. +...|.|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 455667899999999999999999999999999999998664 59999999999999999876 55577999999
Q ss_pred EEeccC
Q 020844 107 CNWATK 112 (320)
Q Consensus 107 v~~a~~ 112 (320)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=1.4e-10 Score=105.84 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=69.0
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
+.+||||+|+++++++|.++|+..| .|.++++..| +||+||+|.+.++|.+|++.||+. ++.|++|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g--~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~---~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG--PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA---EFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC--ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc---ccCCceEEee
Confidence 7899999999999999999999999 8999998765 899999999999999999999999 9999999999
Q ss_pred ecCC
Q 020844 229 WGSK 232 (320)
Q Consensus 229 ~a~~ 232 (320)
|+..
T Consensus 94 ~~~~ 97 (435)
T KOG0108|consen 94 YASN 97 (435)
T ss_pred cccc
Confidence 9854
No 116
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=7.2e-12 Score=98.07 Aligned_cols=71 Identities=28% Similarity=0.511 Sum_probs=67.6
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.-|||||||+++||.||.-+|++|| +|++|.+.|+ +||||+.|++..+...|+..|||. .|.||.|+|.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyG--e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi---ki~gRtirVD 110 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYG--EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI---KILGRTIRVD 110 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccC--ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc---eecceeEEee
Confidence 5799999999999999999999999 9999999987 799999999999999999999999 9999999998
Q ss_pred ec
Q 020844 229 WG 230 (320)
Q Consensus 229 ~a 230 (320)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 64
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.11 E-value=2.1e-10 Score=107.87 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=73.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
++|||||.|+..+++.||..+|+.|| +|.+|.+..+++||||.+.+..+|.+|+..|+.. .+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefG--eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~---kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFG--EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV---KVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcc--cceeEeeccCCceeEEEEeehhHHHHHHHHHhcc---cccceeeEEeeeccC
Confidence 58999999999999999999999999 9999999999999999999999999999999999 999999999999765
Q ss_pred CC
Q 020844 234 TP 235 (320)
Q Consensus 234 ~~ 235 (320)
..
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 43
No 118
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=98.41 Aligned_cols=73 Identities=34% Similarity=0.571 Sum_probs=68.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++|||+||+.++++++|+++|..|| .+..+.+..+ +|+|||+|.+.++|..|+..+++. .+.|+.|+|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g--~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~---~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG--PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK---ELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC--ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC---eECCceeEe
Confidence 48999999999999999999999999 8888888765 699999999999999999999999 999999999
Q ss_pred EecC
Q 020844 228 SWGS 231 (320)
Q Consensus 228 ~~a~ 231 (320)
.++.
T Consensus 190 ~~~~ 193 (306)
T COG0724 190 QKAQ 193 (306)
T ss_pred eccc
Confidence 9964
No 119
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.3e-10 Score=105.87 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=117.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
+.+...++|+|-|||.++++++|+++|+.||+|..|+. |-..+|..||+|-+..+|++|+.+|++.++.|++|++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 44667899999999999999999999999999998665 4456789999999999999999999999999999983
Q ss_pred EeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE
Q 020844 108 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187 (320)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~ 187 (320)
............. ......- .......+..+.+...+|. .|++..+...++..|.-+| .+..-.
T Consensus 145 ~~~~~~~~~~~~~-----~~~~~~~--------~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~--~~~~~~ 208 (549)
T KOG4660|consen 145 PGGARRAMGLQSG-----TSFLNHF--------GSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDG--SSPGRE 208 (549)
T ss_pred CCcccccchhccc-----chhhhhc--------cchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccC--cccccc
Confidence 2222111110000 0000000 0000001111111223443 3898888888888888888 444422
Q ss_pred eeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 188 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 188 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
...-+..-|++|.+..++..+.... |. .+.+....+.++.+
T Consensus 209 ~~~~~hq~~~~~~~~~s~a~~~~~~-G~---~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 TPLLNHQRFVEFADNRSYAFSEPRG-GF---LISNSSGVITFSGP 249 (549)
T ss_pred ccchhhhhhhhhccccchhhcccCC-ce---ecCCCCceEEecCC
Confidence 2222346788888888875555533 55 66777766667654
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.06 E-value=1.2e-09 Score=78.85 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=70.0
Q ss_pred eeEEEcCCCccCcHHHHHHHhccC--CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC----CeeEEE
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG----SRQIRC 107 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 107 (320)
+||+|+|||...|.++|.+++... |...-+.++.|-.++.+.|||||.|.++++|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998543 88899999999999999999999999999999999999999874 556677
Q ss_pred EeccC
Q 020844 108 NWATK 112 (320)
Q Consensus 108 ~~a~~ 112 (320)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.05 E-value=4.8e-10 Score=102.00 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=77.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....|+|||.+|...+...||+++|++||.|.-.+|+.+-.+.-.+-|+||++.+.++|.+||+.|+.+.++|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34579999999999999999999999999999999999888888899999999999999999999999999999999998
Q ss_pred ccC
Q 020844 110 ATK 112 (320)
Q Consensus 110 a~~ 112 (320)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 743
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=2.8e-09 Score=89.69 Aligned_cols=87 Identities=25% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+..+.+|+|.|||+.++++||+++|+.||.+..+-|-.++ +|.+.|.|-|.|...+||..|++.++++.+.|+++.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44456789999999999999999999999999999998886 89999999999999999999999999999999999998
Q ss_pred eccCCCCC
Q 020844 109 WATKGAGN 116 (320)
Q Consensus 109 ~a~~~~~~ 116 (320)
...+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87665443
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=3.9e-09 Score=72.47 Aligned_cols=56 Identities=23% Similarity=0.448 Sum_probs=47.8
Q ss_pred HHHHHHHHh----ccCCccEEEEE---ee------CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 168 QLDLHRHFH----SLGAGVIEEVR---VQ------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 168 ~~~l~~~F~----~~G~~~i~~~~---~~------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
+++|+++|+ +|| .|.++. +. +.+|++||+|.+.++|.+|+..|||. .+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG--~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~---~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFG--EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR---YFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcC--CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEEEeC
Confidence 577888888 999 787774 32 23899999999999999999999999 9999999873
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.90 E-value=2e-09 Score=88.97 Aligned_cols=165 Identities=25% Similarity=0.336 Sum_probs=124.1
Q ss_pred ceeEEEcCCCccCcHHH-H--HHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 33 HFNIFVGDLSPEVTDAT-L--FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~-l--~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
-...+++++-..+..+- | ...|+.|-.+...+++++. -+.-++++|+.|.....-.++-..-+++.+.-++++..-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 45677777777766654 3 6788888888888888885 577889999999988887777766667777666655543
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccC----CccEEE
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEE 185 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G----~~~i~~ 185 (320)
...-..... .+....-.+||.|.|..+++++.|-..|.+|- ...|.+
T Consensus 175 gtswedPsl-----------------------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd 225 (290)
T KOG0226|consen 175 GTSWEDPSL-----------------------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD 225 (290)
T ss_pred ccccCCccc-----------------------------ccCccccceeecccccccccHHHHHHHHHhccchhhcccccc
Confidence 222111110 11111226899999999999999999999985 345666
Q ss_pred EEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 186 VRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 186 ~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
-+..+++||+||.|.+.+++.+|+++|+|. .++.++|+++-.
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gk---yVgsrpiklRkS 267 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGK---YVGSRPIKLRKS 267 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhccc---ccccchhHhhhh
Confidence 666777999999999999999999999999 999999987643
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.86 E-value=3.8e-09 Score=92.14 Aligned_cols=172 Identities=25% Similarity=0.281 Sum_probs=130.2
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
...++|++++.+++.+.++..++..+|......+........++|++++.|...+.+..++.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46799999999999999999999999988888777766788999999999999999999995544345566655554433
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC
Q 020844 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~ 191 (320)
......... ..........+..+|++++..+++++|+.+|..+| .|..+++...
T Consensus 167 ~~~~~~~n~------------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGLRPKNK------------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPTD 220 (285)
T ss_pred cccccccch------------------------hcccccCccccceeecccccccchHHHhhhccCcC--cceeeccCCC
Confidence 322000000 00001111113344999999999999999999999 8888888754
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 192 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 192 ------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+|+++|.|.....+..++.. ... .+.++.+.+.+....
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTR---SIGGRPLRLEEDEPR 264 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccC---cccCcccccccCCCC
Confidence 78999999999999998876 566 799999999987654
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.85 E-value=2e-08 Score=81.53 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=65.0
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee--CC-----CcEEEEEeCCHHHHHHHHHHcCCCCccccc---Ce
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GK 223 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~--~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~---g~ 223 (320)
.+||||.+||.++...||..+|..|- ..+...+. .. +.+|||+|.+..+|..|+..|||. .|+ +.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv---rFDpE~~s 108 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV---RFDPETGS 108 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe---eeccccCc
Confidence 48999999999999999999999986 34444332 11 469999999999999999999999 665 68
Q ss_pred EeEEEecCCCCCCC
Q 020844 224 QMKCSWGSKPTPPG 237 (320)
Q Consensus 224 ~l~v~~a~~~~~~~ 237 (320)
.|++.++++.....
T Consensus 109 tLhiElAKSNtK~k 122 (284)
T KOG1457|consen 109 TLHIELAKSNTKRK 122 (284)
T ss_pred eeEeeehhcCcccc
Confidence 99999998765433
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.81 E-value=8e-09 Score=87.22 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=78.1
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.+.|||+|+.+.+|.+++...|+.||.|..+.|+.|+.++.+|||+||+|.+.+.+..++. |++..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345667899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EeccCC
Q 020844 108 NWATKG 113 (320)
Q Consensus 108 ~~a~~~ 113 (320)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876543
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.79 E-value=3.1e-08 Score=92.42 Aligned_cols=193 Identities=11% Similarity=0.010 Sum_probs=131.4
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+.+.+-+++.+++.++.|++++|-.. .|.++.|..+...+.-.|.++|+|....++.+|+.. +....-.|.+.+.
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTG 384 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhhcceeec
Confidence 34556778889999999999999999542 355566666654455589999999999999999954 6677778888887
Q ss_pred eccCCCCCCCcccCCccc-----cccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccE
Q 020844 109 WATKGAGNNEDKQSSDAK-----SVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 183 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i 183 (320)
.................. ............... .....+.......+|||..||..+++.++-++|...- .|
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~-~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~V 461 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVR-PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AV 461 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccC-CCCCCCCCCCccceEEeccCCccccccchhhhhhhhh--hh
Confidence 665443332222111111 000000000000000 1111234445568999999999999999999999765 66
Q ss_pred EE-EEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020844 184 EE-VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 184 ~~-~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
++ |.+.+. ++.|||.|.+++++..|...-+.. .++.+.|+|.-
T Consensus 462 ed~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~---y~G~r~irv~s 510 (944)
T KOG4307|consen 462 EDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKF---YPGHRIIRVDS 510 (944)
T ss_pred hheeEeccCCcccccchhhheeccccccchhhhccccc---ccCceEEEeec
Confidence 66 555433 689999999999999998877777 78889999874
No 129
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.77 E-value=1.9e-08 Score=91.40 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=68.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
...+|||+|||.++++++|+++|..||+|+...|......+....||||+|.+.++++.|+++ +-..++++++.|+-..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999888876543455558999999999999999966 5778899999998655
Q ss_pred C
Q 020844 112 K 112 (320)
Q Consensus 112 ~ 112 (320)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=3.3e-08 Score=79.56 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=68.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
....++|+.+|..+.+.++..+|.+|| +.+..+++.|+ +|||||+|++.+.|..|.+.||+. .+.++.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~-g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY---Ll~e~lL~ 123 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG-GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY---LLMEHLLE 123 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC-CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh---hhhhheee
Confidence 336799999999999999999999995 38888888765 799999999999999999999999 89999999
Q ss_pred EEecCCC
Q 020844 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9986443
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=5.1e-08 Score=91.26 Aligned_cols=82 Identities=32% Similarity=0.572 Sum_probs=72.2
Q ss_pred CCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee---------CCCcEEEEEeCCHHHHHHHHHHcCCCCcc
Q 020844 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---------RDKGFGFVRYSTHAEAALAIQMGNTTQSS 218 (320)
Q Consensus 148 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 218 (320)
....+..+.|||+||++.++++.|...|+.|| .|..++++ +++.|+||-|-+..+|++|+..|+|.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfg--PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~--- 242 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFG--PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI--- 242 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccC--cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce---
Confidence 34456778999999999999999999999999 77777776 23679999999999999999999999
Q ss_pred cccCeEeEEEecCCCC
Q 020844 219 YLFGKQMKCSWGSKPT 234 (320)
Q Consensus 219 ~~~g~~l~v~~a~~~~ 234 (320)
.+.+..+++.|++.-.
T Consensus 243 iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 243 IVMEYEMKLGWGKAVP 258 (877)
T ss_pred eeeeeeeeeccccccc
Confidence 9999999999996543
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.73 E-value=2e-07 Score=81.44 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=114.4
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
..+++.-|..++|||.-++.+|-.+|.-.-...-.+.+-....|+.-|++.|.|.+.|.-+.|++. +...+.++.|.|-
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 445567788899999999999999997542221111111113467778999999999999999954 6777889999987
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhc-----cCCccE
Q 020844 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS-----LGAGVI 183 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~-----~G~~~i 183 (320)
.+....--.-.. +.+.. .....+....-.|..++||+++++.++.++|.+ -|...|
T Consensus 135 ka~ge~f~~iag-------------g~s~e------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egv 195 (508)
T KOG1365|consen 135 KATGEEFLKIAG-------------GTSNE------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGV 195 (508)
T ss_pred ccCchhheEecC-------------Ccccc------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccce
Confidence 655432211111 00000 000111112246778999999999999999973 232334
Q ss_pred EEEEee--CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 184 EEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 184 ~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
..|+-. |..|-|||.|..+++|..|+.. |.. .++-|.|.+-
T Consensus 196 LFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq---~iGqRYIElF 238 (508)
T KOG1365|consen 196 LFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQ---NIGQRYIELF 238 (508)
T ss_pred EEEECCCCCcccceEEEecCHHHHHHHHHH-HHH---HHhHHHHHHH
Confidence 444432 2368999999999999999986 444 4555555553
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-08 Score=86.86 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=71.6
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCC------cEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020844 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~------g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
..++-+.|||.-|.+-+++++|.-+|+.|| .|..|.+.|++ .||||+|++.+++++|.-.|++. .|+++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG--~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv---LIDDr 309 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFG--KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV---LIDDR 309 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcc--cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce---eeccc
Confidence 445668999999999999999999999999 99999999983 59999999999999999999999 89999
Q ss_pred EeEEEecCC
Q 020844 224 QMKCSWGSK 232 (320)
Q Consensus 224 ~l~v~~a~~ 232 (320)
+|.|.|+.+
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999999743
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.70 E-value=1.2e-07 Score=86.71 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=69.1
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..+.|||.+|...+-..+|+.+|++|| .|+..+++.+ +.|+||++.+.++|.+||+.||.+ ++.|+.|.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyG--KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT---ELHGrmIS 478 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYG--KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT---ELHGRMIS 478 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhc--ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh---hhcceeee
Confidence 458899999999999999999999999 8888888754 679999999999999999999999 99999999
Q ss_pred EEecCCC
Q 020844 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|..++..
T Consensus 479 VEkaKNE 485 (940)
T KOG4661|consen 479 VEKAKNE 485 (940)
T ss_pred eeecccC
Confidence 9987643
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.7e-08 Score=92.20 Aligned_cols=75 Identities=29% Similarity=0.370 Sum_probs=67.3
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
+.+.+..+|+|.|||.++++++|+.+|+.|| +|+.++..+. +|.+||+|.|..+|++|+++|++. ++.|+.|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yG--eir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~---~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYG--EIREIRETPNKRGIVFVEFYDVRDAERALKALNRR---EIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhc--chhhhhcccccCceEEEEEeehHhHHHHHHHHHHH---HhhhhhhcC
Confidence 3345568999999999999999999999999 9999877665 799999999999999999999999 999999884
Q ss_pred E
Q 020844 228 S 228 (320)
Q Consensus 228 ~ 228 (320)
.
T Consensus 145 ~ 145 (549)
T KOG4660|consen 145 P 145 (549)
T ss_pred C
Confidence 3
No 136
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=3e-08 Score=81.75 Aligned_cols=101 Identities=31% Similarity=0.451 Sum_probs=84.0
Q ss_pred hhccccCcccCCCceEEEecccC------C---C--------CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYAS------G---Q--------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 64 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~------~---~--------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~ 64 (320)
||-.|||+.|.|-.+.|.|+... . . .......+.+.|.+++..+.+.+|.+.|.++|.+....
T Consensus 51 av~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 51 AVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 67789999999977999998731 1 0 12245678999999999999999999999999995544
Q ss_pred EeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 65 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 65 i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+ ..+++||+|++.++|.+|++.|++..+.++.|.+...
T Consensus 131 ~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 131 A--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred h--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 4 3358999999999999999999999999999999443
No 137
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=89.15 Aligned_cols=85 Identities=27% Similarity=0.593 Sum_probs=74.4
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCC---CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
+.-.++|||+||+++++|+.|...|..||+|.+++|+.-+.. .+.+-|+||.|-+..||++|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 344689999999999999999999999999999999875421 34566999999999999999999999999999999
Q ss_pred EEeccCCC
Q 020844 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
+.|...-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986533
No 138
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=4.6e-07 Score=78.31 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=86.4
Q ss_pred hhccccCcccCCCceEEEecccCC-----------------------------------CCcCCCCceeEEEcCCC----
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASG-----------------------------------QREDTSGHFNIFVGDLS---- 42 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~-----------------------------------~~~~~~~~~~l~V~nLp---- 42 (320)
||+.||+..|.|+.|+|..++-.. .....+..++|.++||=
T Consensus 199 A~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~ 278 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPED 278 (382)
T ss_pred HHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHH
Confidence 899999999999999999774311 00123456899999983
Q ss_pred ccCc-------HHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020844 43 PEVT-------DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 43 ~~~t-------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
...+ .+||++-+.+||.|.+|.|.- ..+.|.+-|.|.+.++|..||+.|+|..+.||.|.....+.+..
T Consensus 279 ~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 279 FEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 2334 345667789999999998863 34678999999999999999999999999999999987665443
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.55 E-value=7.4e-09 Score=91.28 Aligned_cols=149 Identities=22% Similarity=0.315 Sum_probs=118.1
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCC-eeCCeeEEEEeccCC
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWATKG 113 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~a~~~ 113 (320)
.+|++||.+.++.+||..+|...-.-.+-.++. -.||+||.+.+...|.+|++.++|+ .+.|+++.+..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 689999999999999999996541111111221 2369999999999999999999987 678999999877654
Q ss_pred CCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--
Q 020844 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 191 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-- 191 (320)
... .+.+-|.|+|+...++.|..+...|| .++.|.....
T Consensus 77 kqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~~ 117 (584)
T KOG2193|consen 77 KQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTDS 117 (584)
T ss_pred HHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccch
Confidence 321 15588999999999999999999999 6666654322
Q ss_pred -CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020844 192 -KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 192 -~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.-..-|+|.+.+.+..|+..+++. .+.+..+++.|-.
T Consensus 118 etavvnvty~~~~~~~~ai~kl~g~---Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 118 ETAVVNVTYSAQQQHRQAIHKLNGP---QLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcch---HhhhhhhhcccCc
Confidence 234457889999999999999999 9999999999853
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.52 E-value=1.4e-07 Score=82.66 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=118.3
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCC---CCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..|.|.||.+++|.+.++.+|...|.|.+++|+.+.. -......|||.|.+...+..|- .|.++++-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3799999999999999999999999999999986422 2345678999999999999887 78888888888888765
Q ss_pred cCCCCCCCccc--CCc---c---ccccccCCCCCCC---CCCCCCCCCCCCCC----------cceEEEECCCCccCcHH
Q 020844 111 TKGAGNNEDKQ--SSD---A---KSVVELTNGSSED---GKETTNTEAPENNP----------QYTTVYVGNLAPEVTQL 169 (320)
Q Consensus 111 ~~~~~~~~~~~--~~~---~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~l~V~nl~~~~t~~ 169 (320)
.....+..... ..+ . .+..+...+.... +..+...-.++..+ -.++++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 43322211000 000 0 0001111111100 00000000011111 13789999999999999
Q ss_pred HHHHHHhccCCccEEEEEee--CCCcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 170 DLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 170 ~l~~~F~~~G~~~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
++.++|..+| +|...++- ....+|-++|........|+.. +|.
T Consensus 167 e~~e~f~r~G--ev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gr 211 (479)
T KOG4676|consen 167 ESGESFERKG--EVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGR 211 (479)
T ss_pred hhhhhhhhcc--hhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cch
Confidence 9999999999 66665554 3367888999988888888764 665
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=2e-06 Score=59.28 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=50.4
Q ss_pred eEEEECCCCccCcHH----HHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 155 TTVYVGNLAPEVTQL----DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~----~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
..|+|.|||.+.+.. -|++++.-+| +.|..+. .+.|+|.|.+.+.|.+|...|+|. .+.|.+|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG-GkVl~v~----~~tAilrF~~~~~A~RA~KRmegE---dVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG-GKVLSVS----GGTAILRFPNQEFAERAQKRMEGE---DVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC-CEEEEEe----CCEEEEEeCCHHHHHHHHHhhccc---ccccceEEEEEc
Confidence 469999999988765 4678888998 5777773 579999999999999999999999 899999999997
Q ss_pred CCC
Q 020844 231 SKP 233 (320)
Q Consensus 231 ~~~ 233 (320)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.9e-06 Score=72.76 Aligned_cols=75 Identities=32% Similarity=0.358 Sum_probs=65.9
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
..+|+|.|||+.++++||+++|+.|| .++.+-+.-+ .|.|-|.|...++|.+|++.+|+. .++|+.+++.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~--~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv---~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFG--ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV---ALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhc--cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc---ccCCceeeeE
Confidence 37899999999999999999999998 6666666533 689999999999999999999999 9999999988
Q ss_pred ecCCC
Q 020844 229 WGSKP 233 (320)
Q Consensus 229 ~a~~~ 233 (320)
...++
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76544
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=3.3e-06 Score=77.01 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=62.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC----C--CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR----D--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~----~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
..+|||+|||.++++++|+++|..|| .|+...|.. + ..||||+|.+.+++..|+.+- -. .+++++|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG--~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~---~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFG--PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PL---EIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcc--cccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-cc---ccCCeeEEE
Confidence 35599999999999999999999999 777766653 2 279999999999999999874 55 799999999
Q ss_pred EecCC
Q 020844 228 SWGSK 232 (320)
Q Consensus 228 ~~a~~ 232 (320)
.-.+.
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 87654
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.31 E-value=2.4e-06 Score=58.89 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=47.4
Q ss_pred eeEEEcCCCccCcHHHHH----HHhccC-CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 34 FNIFVGDLSPEVTDATLF----ACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~----~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.-|+|.|||.+.+...|+ .++..| |.|.+| +.+.|+|.|.+.+.|.+|...|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998887654 566677 456554 12579999999999999999999999999999999
Q ss_pred eccCCC
Q 020844 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875443
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.13 E-value=1.9e-05 Score=57.12 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=60.0
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCccccc----CeE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQ 224 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~----g~~ 224 (320)
+||-|.|||...|.++|.+++...-....-.+.++-| .|||||.|.++++|.+-.+.++|. .+. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~---~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK---KWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC---ccccCCCCcE
Confidence 6899999999999999998888653334444444422 799999999999999999999999 543 477
Q ss_pred eEEEecCCC
Q 020844 225 MKCSWGSKP 233 (320)
Q Consensus 225 l~v~~a~~~ 233 (320)
..|.||+-.
T Consensus 79 c~i~yAriQ 87 (97)
T PF04059_consen 79 CEISYARIQ 87 (97)
T ss_pred EEEehhHhh
Confidence 788888643
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=1.1e-06 Score=71.32 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=66.1
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++|||+|+...++|+.|.++|-+.| .|..|.|..+ ..||||.|.++....-|++.+||. .+.++.+.+.+.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaG--PV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~---~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAG--PVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGD---DLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccC--ceEEEeCCCCccCCCceeeeecccccchhhhhhhcccc---hhccchhhcccc
Confidence 7899999999999999999999999 8999998865 249999999999999999999999 999999998875
Q ss_pred C
Q 020844 231 S 231 (320)
Q Consensus 231 ~ 231 (320)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.11 E-value=3.1e-06 Score=73.84 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=78.3
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCee--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 101 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~ 101 (320)
.+...+|||-+||.++++++|.++|..+|.|. .|+|-+|+.|++.||-|.|.|.+...|+.|++-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999884 4788899999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 020844 102 SRQIRCNWATKGAG 115 (320)
Q Consensus 102 g~~l~v~~a~~~~~ 115 (320)
+..|+|..+.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988876653
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.11 E-value=5.8e-06 Score=69.98 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=65.3
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
...+||+|++..++.+++..+|+.|| .+..+.+.. .+|++||+|.+.+.+..++. |++. .+.|+.+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg--~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs---~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCG--GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS---EIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccC--CccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc---cccccccee
Confidence 36899999999999999999999999 666555543 37899999999999999998 9999 999999999
Q ss_pred EecCCCC
Q 020844 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
.+.+...
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 9876553
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.07 E-value=3.2e-06 Score=73.99 Aligned_cols=84 Identities=26% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCceeEE-EcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 31 SGHFNIF-VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 31 ~~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++| |++|+.++++++|+.+|..+|.|..+++..++.++..+|||||.|.+..++..++.. ....+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3444555 999999999999999999999999999999999999999999999999999999976 78889999999998
Q ss_pred ccCCCC
Q 020844 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 776543
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=1.3e-05 Score=59.34 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=40.0
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 213 (320)
+.|+|.+++.+++.++|++.|+.|| .|..|.+.++...|+|.|.+.++|..|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 5688999999999999999999999 99999999998999999999999999998764
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=74.03 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=67.1
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCee-EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
.+.|-+.|+|++++.+||.++|..|-.+- +|.+.++ ..|..+|-|.|.|++.++|.+|...|+++.|..|.|++..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 45889999999999999999999997664 4555555 5799999999999999999999999999999999998763
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.94 E-value=2.8e-05 Score=67.20 Aligned_cols=80 Identities=19% Similarity=0.407 Sum_probs=61.9
Q ss_pred ceeEEEcCCCccCcHHH----H--HHHhccCCCeeEEEEeecCCC-CCccceE--EEEecCHHHHHHHHHHhCCCeeCCe
Q 020844 33 HFNIFVGDLSPEVTDAT----L--FACFSVYPSCSDARVMWDQKT-GRSRGFG--FVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~----l--~~~F~~~G~i~~v~i~~~~~~-g~~~G~a--fV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
..-|||-+||+.+..++ | .++|..||.|..|.|.+.-.+ ....+.+ ||+|.+.|||.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999998877666 2 379999999988877654211 1112223 9999999999999999999999999
Q ss_pred eEEEEeccC
Q 020844 104 QIRCNWATK 112 (320)
Q Consensus 104 ~l~v~~a~~ 112 (320)
-|++.|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988653
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.89 E-value=5.3e-05 Score=56.06 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=43.2
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC-----CCeeCCeeEEEE
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-----GKWLGSRQIRCN 108 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~-----~~~~~g~~l~v~ 108 (320)
..|+|.+++..++-++|++.|+.||.|..|.+.+... -|||.|.+.++|+.|++.+. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999999988865422 68999999999999998763 334556555554
Q ss_pred e
Q 020844 109 W 109 (320)
Q Consensus 109 ~ 109 (320)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.88 E-value=2.9e-05 Score=49.74 Aligned_cols=52 Identities=19% Similarity=0.393 Sum_probs=42.7
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHH
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 92 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~ 92 (320)
+.|-|.+.+.+..+..| ..|..||+|.++.+.... -+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 57889999988876555 588899999998886333 28999999999999985
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.87 E-value=1.5e-05 Score=69.22 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=69.7
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCC--CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
...++||+||-|.+|++||.+.+...| .|.+++++.++.+|.+||||+|...+..+.++-++.|-.+.|+|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 457899999999999999999887665 567889999999999999999999999999999999999999998766654
Q ss_pred c
Q 020844 110 A 110 (320)
Q Consensus 110 a 110 (320)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.86 E-value=5.2e-05 Score=65.88 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=59.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
-++|||||-+.+|++||.+.....|...+.++++..+ ||||+|...+..+.++.++.|-.+ +|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k---~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK---TIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc---eecCCCCee
Confidence 6799999999999999999999888666777777643 899999999999999999999888 888865444
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=2.5e-05 Score=75.26 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=70.4
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
...|+|+|+|+.+|.++++.++..+|.+.+.+++..+ .|+.+|-|||.|.++.++.+++...+...+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5679999999999999999999999999999988885 799999999999999999999988887777777777776554
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.79 E-value=0.00011 Score=63.56 Aligned_cols=74 Identities=28% Similarity=0.481 Sum_probs=62.5
Q ss_pred eEEEECCCCccCcHHH----H--HHHHhccCCccEEEEEeeCC-------Cc--EEEEEeCCHHHHHHHHHHcCCCCccc
Q 020844 155 TTVYVGNLAPEVTQLD----L--HRHFHSLGAGVIEEVRVQRD-------KG--FGFVRYSTHAEAALAIQMGNTTQSSY 219 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~----l--~~~F~~~G~~~i~~~~~~~~-------~g--~afV~f~~~~~A~~A~~~l~~~~~~~ 219 (320)
+-+||-+|++.+-.++ | .++|++|| .|..+.+.+. .+ -.+|+|.+.|+|.+|+.+.+|. .
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyG--kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs---~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYG--KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS---L 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhcc--ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc---c
Confidence 5689999999886655 2 58999999 9999988764 22 2499999999999999999999 9
Q ss_pred ccCeEeEEEecCCC
Q 020844 220 LFGKQMKCSWGSKP 233 (320)
Q Consensus 220 ~~g~~l~v~~a~~~ 233 (320)
++||.|+..|...+
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999998654
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=9.6e-05 Score=47.33 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=44.2
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHH
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 209 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~ 209 (320)
+.|-|.+.+.+..+. ++.+|..|| +|.++.+.......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fG--eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFG--EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcC--CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568888888776654 555888999 9999999977889999999999999985
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.0001 Score=61.56 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=81.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|-.+|+++..-|+.+.|.++.- ..|||.||..-++-|.+.+.|+.||+|+...++.| ..++..|-++|+
T Consensus 10 ak~eLd~~~~~~~~lr~rfa~~----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~ 78 (275)
T KOG0115|consen 10 AKRELDGRFPKGRSLRVRFAMH----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVE 78 (275)
T ss_pred HHHhcCCCCCCCCceEEEeecc----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhh
Confidence 4567999999999999999963 36999999999999999999999999988777777 468899999999
Q ss_pred ecCHHHHHHHHHHhCCC----eeCCeeEEEEec
Q 020844 82 FRNQQDAQSAINDLTGK----WLGSRQIRCNWA 110 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~----~~~g~~l~v~~a 110 (320)
|...-.|.+|.+.++-. ...+++.-|...
T Consensus 79 ~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 79 FAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 99999999999887432 234566555543
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.60 E-value=7.5e-05 Score=66.69 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=61.6
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeec---CCCC--C--------ccceEEEEecCHHHHHHHHHHhC
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD---QKTG--R--------SRGFGFVSFRNQQDAQSAINDLT 96 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g--~--------~~G~afV~f~~~~~A~~A~~~l~ 96 (320)
+-++++|.+-|||.+-.-+.|.++|..+|.|..|+|..- ..+. . .+-||||+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999999999999999999999999865 2222 1 25689999999999999998775
Q ss_pred CCeeCCeeEEE
Q 020844 97 GKWLGSRQIRC 107 (320)
Q Consensus 97 ~~~~~g~~l~v 107 (320)
....+-.-++|
T Consensus 308 ~e~~wr~glkv 318 (484)
T KOG1855|consen 308 PEQNWRMGLKV 318 (484)
T ss_pred hhhhhhhcchh
Confidence 54443333333
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00034 Score=64.69 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCceeEEEcCCCcc--CcHHH----HHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee-CCe
Q 020844 31 SGHFNIFVGDLSPE--VTDAT----LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSR 103 (320)
Q Consensus 31 ~~~~~l~V~nLp~~--~te~~----l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~-~g~ 103 (320)
.-...|+|-|+|.- ..-+. |..+|+++|.|....++.+.. |..+||.|++|.+..+|+.|+..|||..+ ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45678999999953 33333 557899999999999998864 55999999999999999999999999987 466
Q ss_pred eEEEEec
Q 020844 104 QIRCNWA 110 (320)
Q Consensus 104 ~l~v~~a 110 (320)
.+.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777654
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.55 E-value=6.7e-05 Score=62.65 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=62.8
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCC--------CCccce----EEEEecCHHHHHHHHHHhCCCe
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT--------GRSRGF----GFVSFRNQQDAQSAINDLTGKW 99 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--------g~~~G~----afV~f~~~~~A~~A~~~l~~~~ 99 (320)
..--||+++||+.+...-||++|+.||.|-.|.+-.+..+ |.++++ |.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999998776544 334443 4599999999999999999999
Q ss_pred eCCeeE
Q 020844 100 LGSRQI 105 (320)
Q Consensus 100 ~~g~~l 105 (320)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.50 E-value=0.00024 Score=63.50 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=54.7
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-------------------CcEEEEEeCCHHHHHHHHHHc
Q 020844 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------------------KGFGFVRYSTHAEAALAIQMG 212 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-------------------~g~afV~f~~~~~A~~A~~~l 212 (320)
-+.++|.+.|||.+-.-+.|.++|+.+| .|..|+|.+. +-+|||+|+..+.|.+|.+.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999999999999999 9999999754 358999999999999999988
Q ss_pred CCC
Q 020844 213 NTT 215 (320)
Q Consensus 213 ~~~ 215 (320)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 654
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.38 E-value=0.00023 Score=62.43 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEE--------E------EeeCCCcEEEEEeCCHHHHHHHHHHcCCCC
Q 020844 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------V------RVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 216 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~--------~------~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 216 (320)
.....+|||-+|+..+++++|.++|.++| .|.. + ...+.|+-|.|.|++...|+.|+..++++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg--~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk- 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCG--VIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK- 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcc--eeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc-
Confidence 45567899999999999999999999998 3321 1 22234899999999999999999999999
Q ss_pred cccccCeEeEEEecCCCCC
Q 020844 217 SSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 217 ~~~~~g~~l~v~~a~~~~~ 235 (320)
.+.+..|+|.++.....
T Consensus 140 --df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 --DFCGNTIKVSLAERRTG 156 (351)
T ss_pred --cccCCCchhhhhhhccC
Confidence 99999999999876543
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.37 E-value=8.2e-05 Score=62.26 Aligned_cols=63 Identities=24% Similarity=0.460 Sum_probs=52.1
Q ss_pred HHHHHHhc-cCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 48 ATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 48 ~~l~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
+||...|+ +||+|++++|..+. .-.-.|=+||.|...++|++|++.||+..+.|++|.+.++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444454 99999999887653 45567889999999999999999999999999999998764
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.0013 Score=47.93 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=51.4
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEE-EeecC------CCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR-VMWDQ------KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~~------~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
.++.|.|=+.|+. ....|.+.|++||+|.+.. +.++. ........-.|.|.++.+|.+|+ .-||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 4567889999998 5567789999999997764 11110 00122347899999999999999 55999998865
Q ss_pred E-EEEecc
Q 020844 105 I-RCNWAT 111 (320)
Q Consensus 105 l-~v~~a~ 111 (320)
+ -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466653
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.34 E-value=0.00061 Score=58.05 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=53.5
Q ss_pred HHHHHHHhccCCCeeEEEEeecCCCCCcc-ceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020844 47 DATLFACFSVYPSCSDARVMWDQKTGRSR-GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 47 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~-G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
|+++++-+++||.|..|.|+.+..-.... --.||+|+..++|.+|+-.|||..|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45788999999999999888765433222 246999999999999999999999999999877654
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.00059 Score=57.15 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccC
Q 020844 87 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 166 (320)
Q Consensus 87 ~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 166 (320)
-|..|..+|++....|+.++|.|+.. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 46677788899999999999999876 359999999999
Q ss_pred cHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCC
Q 020844 167 TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 167 t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
+.+.+++-|+.|| .|..-.+.-+ .+-++|.|...-.|.+|+...+.
T Consensus 44 sndll~~~f~~fg--~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 44 SNDLLEQAFRRFG--PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred hhHHHHHhhhhcC--ccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 9999999999999 5555444322 57899999999999999887643
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.29 E-value=0.0015 Score=47.62 Aligned_cols=69 Identities=28% Similarity=0.282 Sum_probs=51.2
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEE-------------eeCCCcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-------------VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~-------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
+.|.|-+.|+. ....|.+.|++|| .|.+.. .........|+|+++.+|.+|++. ||. .+.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~---i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT---IFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE---EET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe---EEc
Confidence 56888899988 5567888999999 888775 555678999999999999999975 999 888
Q ss_pred CeEe-EEEec
Q 020844 222 GKQM-KCSWG 230 (320)
Q Consensus 222 g~~l-~v~~a 230 (320)
|..+ -|.+.
T Consensus 80 g~~mvGV~~~ 89 (100)
T PF05172_consen 80 GSLMVGVKPC 89 (100)
T ss_dssp TCEEEEEEE-
T ss_pred CcEEEEEEEc
Confidence 8544 46665
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00082 Score=61.72 Aligned_cols=65 Identities=26% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhc-cCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHH
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~ 94 (320)
-++.+|||||+||.-++.++|..+|+ -||-|..+-|=.|++-+..+|-|=|+|.+..+-.+||+.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 35689999999999999999999997 799999999988877899999999999999999999964
No 172
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.21 E-value=0.00061 Score=66.38 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=81.6
Q ss_pred hccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEe
Q 020844 3 ILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82 (320)
Q Consensus 3 i~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f 82 (320)
..+|.+..|..-++++..... .....+.+|+++|+..+....|...|..||.|..|.+-.- . -|++|.|
T Consensus 430 k~e~s~~~I~~g~~r~glG~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg----q--~yayi~y 498 (975)
T KOG0112|consen 430 KFEESGPLIGNGTHRIGLGQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG----Q--PYAYIQY 498 (975)
T ss_pred chhhcCCccccCccccccccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC----C--cceeeec
Confidence 345666666666666665532 3456789999999999999999999999999998776432 2 3999999
Q ss_pred cCHHHHHHHHHHhCCCeeCC--eeEEEEeccCCCCC
Q 020844 83 RNQQDAQSAINDLTGKWLGS--RQIRCNWATKGAGN 116 (320)
Q Consensus 83 ~~~~~A~~A~~~l~~~~~~g--~~l~v~~a~~~~~~ 116 (320)
++...++.|++.+.|..+.+ ++++|.++......
T Consensus 499 es~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 499 ESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 99999999999999999864 77999998765443
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.11 E-value=0.00052 Score=63.89 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020844 144 NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 144 ~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
....|......+.|||.||-.-.|.-.|+.++.+-| ..|++..|.+-+..|||.|.+.++|.....+|||..-..-+.+
T Consensus 434 RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 434 RVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred cCCCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 344555667789999999999999999999999554 2787776667789999999999999999999999842224568
Q ss_pred EeEEEecCC
Q 020844 224 QMKCSWGSK 232 (320)
Q Consensus 224 ~l~v~~a~~ 232 (320)
.|.+.|+..
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 999999753
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.10 E-value=0.0034 Score=43.49 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=41.4
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 96 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~ 96 (320)
.||--..|.++.-.||.++|++||.|. |..+.|. -|||...+.+.|..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 344445999999999999999999996 6666553 69999999999999998775
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00043 Score=58.05 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=49.3
Q ss_pred HHHHHHHh-ccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 169 LDLHRHFH-SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 169 ~~l~~~F~-~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
+++...|+ +|| +|+.+.+-.+ .|.++|.|..+++|.+|++.||+. ++.|++|...+..-
T Consensus 83 Ed~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR---w~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR---WYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc---cccCCcceeeecCc
Confidence 44555555 899 8888866554 789999999999999999999999 99999999998643
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.91 E-value=0.0006 Score=57.10 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=57.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--------------C----cEEEEEeCCHHHHHHHHHHcCC
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------------K----GFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--------------~----g~afV~f~~~~~A~~A~~~l~~ 214 (320)
..-.||+++||+.....-|+++|+.|| .|-.|.+-+. + .-|.|+|.+...|.++...||+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yG--eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYG--EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcc--ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999999999999999 8888887643 0 1378999999999999999999
Q ss_pred CCcccccCeE
Q 020844 215 TQSSYLFGKQ 224 (320)
Q Consensus 215 ~~~~~~~g~~ 224 (320)
. .|+|+.
T Consensus 151 ~---~Iggkk 157 (278)
T KOG3152|consen 151 T---PIGGKK 157 (278)
T ss_pred C---ccCCCC
Confidence 9 898865
No 177
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.91 E-value=0.011 Score=43.88 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=49.5
Q ss_pred ceeEEEcCCC-ccCcHHHHHHHhccC-CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC
Q 020844 33 HFNIFVGDLS-PEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 101 (320)
Q Consensus 33 ~~~l~V~nLp-~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~ 101 (320)
+..|.|--+| .-++-++|..+.+.+ ..|..++|++|. ..++=.+++.|.+.++|....+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445544455 555556676666666 557889999873 346667899999999999999999999774
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.88 E-value=0.0012 Score=61.61 Aligned_cols=78 Identities=9% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhc-cCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee---CCeeE
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQI 105 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~---~g~~l 105 (320)
...++.|+|.||-.-.|.-.|++++. ..|.|++.+|=+ -|-.|||.|.+.++|...+++|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34578999999999999999999997 667787775422 234799999999999999999999987 67889
Q ss_pred EEEeccCC
Q 020844 106 RCNWATKG 113 (320)
Q Consensus 106 ~v~~a~~~ 113 (320)
.+.|....
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99887543
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.86 E-value=0.005 Score=47.72 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=52.7
Q ss_pred CceeEEEcCCC-----ccCcHH----HHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020844 32 GHFNIFVGDLS-----PEVTDA----TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 32 ~~~~l~V~nLp-----~~~te~----~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
+.-+|.|.=+. .+.-.+ +|.+.|..||++.-++++.+ .-+|+|.+-++|-+|+ .++|..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECC
Confidence 45566666555 122233 57788899999988888765 3699999999999999 899999999
Q ss_pred eeEEEEeccCC
Q 020844 103 RQIRCNWATKG 113 (320)
Q Consensus 103 ~~l~v~~a~~~ 113 (320)
+.|.|....+.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999876653
No 180
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.74 E-value=0.0022 Score=52.15 Aligned_cols=82 Identities=12% Similarity=0.199 Sum_probs=51.4
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhcc-CCCe---eEEEEeecC-CC-CCccceEEEEecCHHHHHHHHHHhCCCeeC---
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSV-YPSC---SDARVMWDQ-KT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLG--- 101 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~-~~-g~~~G~afV~f~~~~~A~~A~~~l~~~~~~--- 101 (320)
....+|.||+||+++||+++.+.++. ++.- ..+.-.... .. ...-.-|||.|.+.+++....+.++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44669999999999999999998887 6655 333311111 11 123346899999999999999999998763
Q ss_pred C--eeEEEEeccC
Q 020844 102 S--RQIRCNWATK 112 (320)
Q Consensus 102 g--~~l~v~~a~~ 112 (320)
| .+..|+++--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3455666544
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.65 E-value=0.01 Score=39.00 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=44.1
Q ss_pred eeEEEcCCCccCcHHHHHHHhccC----CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l 95 (320)
..|+|+++. +++.+||+.+|..| + ...|..+-|. -|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 379999995 58889999999998 4 4468888775 4889999999999999754
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.57 E-value=0.014 Score=45.31 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 169 LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 169 ~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.+|.+.|..|| ++.-+++..+ .-+|+|.+-+.|.+|++ ++|. .++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~G--evvLvRfv~~--~mwVTF~dg~sALaals-~dg~---~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYG--EVVLVRFVGD--TMWVTFRDGQSALAALS-LDGI---QVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS---ECEEEEETT--CEEEEESSCHHHHHHHH-GCCS---EETTEEEEEEE---
T ss_pred HHHHHHHHhCC--ceEEEEEeCC--eEEEEECccHHHHHHHc-cCCc---EECCEEEEEEeCCc
Confidence 36888999999 7888888874 88999999999999986 7999 99999999997654
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.53 E-value=0.016 Score=38.12 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=41.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhcc----CCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHc
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSL----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 212 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~----G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 212 (320)
..|+|.+++ +++.++|+.+|..| ++. .+....+ ..|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~---~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF---RIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc---eEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 579999986 48889999999999 533 4444433 46889999999999999764
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.39 E-value=0.0097 Score=50.96 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 168 QLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 168 ~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++++++.+++|| .|..|.|... .---||+|...++|.+|+-.|||+ .|+|+.++..|-
T Consensus 300 ede~keEceKyg--~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR---yFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYG--KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR---YFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhc--ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc---eecceeeeheec
Confidence 467899999999 8888887644 235899999999999999999999 999999987664
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.21 E-value=0.005 Score=54.70 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=58.6
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
..|.|.||.+..+.+.++.+|.-.| .|.++.+..+ ...|||.|.+...+..|. .|.++ .+-++.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lG--kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtnt---vfvdral 81 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLG--KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNT---VFVDRAL 81 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcc--ccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccc---eeeeeeE
Confidence 4799999999999999999999999 9999998864 468999999998888774 56666 6778777
Q ss_pred EEEe
Q 020844 226 KCSW 229 (320)
Q Consensus 226 ~v~~ 229 (320)
.|--
T Consensus 82 iv~p 85 (479)
T KOG4676|consen 82 IVRP 85 (479)
T ss_pred EEEe
Confidence 7654
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.14 E-value=0.039 Score=42.34 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=57.1
Q ss_pred CcceEEEECCCCccC----cHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 152 PQYTTVYVGNLAPEV----TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~----t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
++-.+|.|.=|...+ +...+...++.|| .|.+|..- ++..|.|.|.|..+|..|+.++... ..|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--pI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~----~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--PIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR----APGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcC--Ccceeeec-CCceEEEEehhhHHHHHHHHhhcCC----CCCceEEe
Confidence 344678887665554 3344667778999 88888765 3678999999999999999999877 78889999
Q ss_pred EecC
Q 020844 228 SWGS 231 (320)
Q Consensus 228 ~~a~ 231 (320)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 9853
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.13 E-value=0.019 Score=43.99 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=56.8
Q ss_pred CCCceeEEEcCCCccCc----HHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020844 30 TSGHFNIFVGDLSPEVT----DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
+.+=.+|.|+=|..++. -..+...++.||+|.+|.+.-. --|.|.|++..+|-+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 44556888877766653 2245556689999999987643 2699999999999999988766 5678889
Q ss_pred EEEeccC
Q 020844 106 RCNWATK 112 (320)
Q Consensus 106 ~v~~a~~ 112 (320)
.|.|..+
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9988654
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.00 E-value=0.027 Score=39.09 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=39.2
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
...+|. .|.++...||.++|+.|| .|. |.... -..|||...+.+.|..++..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG--~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFG--QIY-VSWIN-DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCC--CEE-EEEEC-TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCC--cEE-EEEEc-CCcEEEEeecHHHHHHHHHHhcc
Confidence 445554 999999999999999999 443 33332 35899999999999999988763
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.99 E-value=0.022 Score=46.53 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=49.3
Q ss_pred cHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcC--CCCcccccCeEeEEEecCCC
Q 020844 167 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 167 t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~~~~g~~l~v~~a~~~ 233 (320)
..+.|+++|..|+ .+..+..+++-+-..|.|.+.++|.+|...|+ +. .+.|..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~--~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~---~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYD--PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT---SFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS---EETTEE-EEE----S
T ss_pred hHHHHHHHHHhcC--CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc---ccCCCceEEEEcccc
Confidence 4578999999999 88899999998899999999999999999999 88 999999999998543
No 190
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.92 E-value=0.012 Score=53.62 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=61.1
Q ss_pred ceEEEECCCCccC-cHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020844 154 YTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 154 ~~~l~V~nl~~~~-t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.+.|-+.-.+... +.++|...|.+|| +|..|.+.-+.-.|.|+|.+..+|-+|- ..++. .|+++.|+|.|-++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~a---vlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGA---VLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcC--ccccccccCchhhheeeeeccccccchh-ccccc---eecCceeEEEEecC
Confidence 3555555566655 6789999999999 9999988877678999999999997775 35888 89999999999876
Q ss_pred CC
Q 020844 233 PT 234 (320)
Q Consensus 233 ~~ 234 (320)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 191
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.026 Score=52.72 Aligned_cols=70 Identities=23% Similarity=0.215 Sum_probs=56.0
Q ss_pred eEEEECCCCccC------cHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccC-
Q 020844 155 TTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG- 222 (320)
Q Consensus 155 ~~l~V~nl~~~~------t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g- 222 (320)
..|+|.|+|--- -...|..+|+++| ++....++-+ +|+.|++|.+..+|..|+..|||+ .++-
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g--k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~---~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAG--KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK---RLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhc--cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc---eeccc
Confidence 679999988622 1245779999999 8888888744 899999999999999999999999 6654
Q ss_pred eEeEEEe
Q 020844 223 KQMKCSW 229 (320)
Q Consensus 223 ~~l~v~~ 229 (320)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6666653
No 192
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.84 E-value=0.0078 Score=54.08 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=59.6
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+.+|++||.+.++..+|+.+|...- ..... .++-..||+||.+.+..-|.+|++.++++. ++.|+++.+.+.-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~~~~g-~fl~k~gyafvd~pdq~wa~kaie~~sgk~--elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-IPGSG-QFLVKSGYAFVDCPDQQWANKAIETLSGKV--ELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-CCCCc-ceeeecceeeccCCchhhhhhhHHhhchhh--hhcCceeeccchhhH
Confidence 3699999999999999999998652 11111 122225899999999999999999999985 789999999887544
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.83 E-value=0.004 Score=54.51 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=61.9
Q ss_pred ceeEEEcCCCccCcHHHHH---HHhccCCCeeEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020844 33 HFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
.+-+||-+|+.....+++. +.|..||.|..|.+.++.. .+-.- -++|+|...++|..||...+|....|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3568888899776555443 5899999999998888652 11111 26999999999999999999999999998
Q ss_pred EEEeccCC
Q 020844 106 RCNWATKG 113 (320)
Q Consensus 106 ~v~~a~~~ 113 (320)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88776553
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.74 E-value=0.025 Score=52.64 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=54.7
Q ss_pred CceeEEEcCCCccCcHHHHHHHhc--cCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCC--CeeCCeeEEE
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFS--VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--KWLGSRQIRC 107 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~--~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~--~~~~g~~l~v 107 (320)
..+.|.++-||..+-+|+++.+|. .|-.+.+|.+-.+.+ =||+|++..||+.|...|.. +.|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 356788899999999999999995 478888888866532 58999999999999877643 3456666654
Q ss_pred E
Q 020844 108 N 108 (320)
Q Consensus 108 ~ 108 (320)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.55 E-value=0.062 Score=48.93 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=59.7
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccC-CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 101 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~ 101 (320)
..++.|.|-.+|..+|-.||..|+..+ -.|.+++|+||. -.++=..+|.|++.++|....+++||+.+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 348899999999999999999999776 678999999974 235556799999999999999999999874
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.54 E-value=0.036 Score=51.63 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=56.7
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
|.+.++.|+..+-+|+++.+|..=-+-.+.+|.+..+ .-.||+|++..||+.|...|... ..+|-|+.|..+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylree-vk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREE-VKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHH-HHhhcCcchhhh
Confidence 6788899999999999999999633448889988765 45799999999999998877443 126777776544
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.31 E-value=0.11 Score=34.69 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=44.0
Q ss_pred cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020844 44 EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 44 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
.++-++|+..+..|+-. +|..|+ | || ||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999753 344454 3 34 89999999999999999999988877654
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.09 E-value=0.012 Score=53.61 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=63.2
Q ss_pred CCCceeEEEcCCCccC-cHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020844 30 TSGHFNIFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
..+++.|-+.-.|+.. |.++|...|..||+|++|.|-... -.|.|+|.+..+|-.|. ..++..|.+|.|+|.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEE
Confidence 3456667777777765 567899999999999999885442 26899999999998887 568999999999999
Q ss_pred eccCCC
Q 020844 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
|..+..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987743
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.83 E-value=0.094 Score=42.90 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=46.3
Q ss_pred cHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeccCC
Q 020844 46 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIRCNWATKG 113 (320)
Q Consensus 46 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~ 113 (320)
..+.|+++|..|+.+.....++. -+-..|.|.+.++|.+|+..|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988877754 2468999999999999999999 99999999999998543
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.77 E-value=0.62 Score=34.66 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=49.7
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
..+.+...|..++.++|..+.+.+- ..|..+++.|+ +-.+++.|.+.++|..-...+||+ .++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk---~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGK---PFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCC---ccCC
Confidence 4455555666677788887777764 47888999887 346899999999999999999999 5543
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.61 E-value=0.025 Score=55.20 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=64.5
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee--CCeeEEEEeccC
Q 020844 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATK 112 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~ 112 (320)
+.++.|.+-+.+-.-|..+|..||.+.+++.+++-+ .|.|+|.+.+.|..|+++++|+.+ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455666677888999999999999999999998865 799999999999999999999976 688899988865
Q ss_pred CCC
Q 020844 113 GAG 115 (320)
Q Consensus 113 ~~~ 115 (320)
-+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 443
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.48 E-value=2.6 Score=36.62 Aligned_cols=176 Identities=9% Similarity=0.121 Sum_probs=100.2
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecC-------CCCCccceEEEEecCHHHHHHHHHH----hC-
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-------KTGRSRGFGFVSFRNQQDAQSAIND----LT- 96 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~~g~~~G~afV~f~~~~~A~~A~~~----l~- 96 (320)
+.-..|.|.+.||..+++--.+...|.+||+|++|.++.+. ..........+.|-+.+.+-..... |.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44557889999999999999999999999999999999774 1123445788999999987766532 22
Q ss_pred -CCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcH-HHHHHH
Q 020844 97 -GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ-LDLHRH 174 (320)
Q Consensus 97 -~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~-~~l~~~ 174 (320)
.+.+....|.+.+..-+-....... .......... ...-.-.-.....++.|.|. +...+.+ +-+.+.
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~-~~~~~~~~~~--------~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~k 160 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPN-DEEADFSDYL--------VASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKK 160 (309)
T ss_pred HHHhcCCcceeEEEEEEecccccccc-ccccchhhHH--------hhhhhheeecCCcceEEEEE-ecCccchhHHHHHh
Confidence 2235566677666542111110000 0000000000 00000000011122566664 3344433 333333
Q ss_pred Hh---ccC--CccEEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHcCC
Q 020844 175 FH---SLG--AGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 175 F~---~~G--~~~i~~~~~~~~--------~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
+. .-+ ..-++++.+... +.||+++|-+..-|...+.-+..
T Consensus 161 L~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 161 LPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred hhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 22 112 125677777632 67999999999999888887653
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.08 E-value=0.02 Score=50.19 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=59.9
Q ss_pred eEEEECCCCccCcHHHH-H--HHHhccCCccEEEEEeeCCC---------cEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020844 155 TTVYVGNLAPEVTQLDL-H--RHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l-~--~~F~~~G~~~i~~~~~~~~~---------g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
+-+||-+|+..+..+++ + +.|.+|| .|..+.+.++. --++|+|...++|..|+...+|. .++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg--ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~---~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG--KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF---VDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc--cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH---Hhhh
Confidence 45788888887755443 3 7899999 88888887742 24899999999999999999999 8999
Q ss_pred eEeEEEecCCC
Q 020844 223 KQMKCSWGSKP 233 (320)
Q Consensus 223 ~~l~v~~a~~~ 233 (320)
+.|+..+...+
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 99888887654
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.96 E-value=0.029 Score=53.42 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
.+.-+|||+|+...+..+-++.+...+|.|.+++.. + |||.+|..+.-..+|+..++...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345699999999999999999999999999876543 2 999999999999999999888888888877764
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=0.29 Score=42.46 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=56.0
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE-EEEec
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI-RCNWA 110 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l-~v~~a 110 (320)
.+..|-|=++|+.-+ ..|..+|++||+|.+.... .+--+-+|.|.+..+|.+|+ ..+|+.|.|..+ -|..+
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 367888888887655 4566899999999876443 22238899999999999999 569999987654 46665
Q ss_pred cCCC
Q 020844 111 TKGA 114 (320)
Q Consensus 111 ~~~~ 114 (320)
..+.
T Consensus 268 tDks 271 (350)
T KOG4285|consen 268 TDKS 271 (350)
T ss_pred CCHH
Confidence 5443
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.46 E-value=0.069 Score=50.95 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 148 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
....++..++||+|+...+..+-++.+...+| .|..+.... |+|+.|..+....+|+..++.. .++|..+.+
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g--~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~---~~~~~kl~~ 105 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSG--FVPSWKRDK---FGFCEFLKHIGDLRASRLLTEL---NIDDQKLIE 105 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCC--cchhhhhhh---hcccchhhHHHHHHHHHHhccc---CCCcchhhc
Confidence 34445567899999999999999999999999 777766555 9999999999999999999998 898888766
Q ss_pred Ee
Q 020844 228 SW 229 (320)
Q Consensus 228 ~~ 229 (320)
.-
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 54
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.27 E-value=0.18 Score=43.66 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=53.6
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe-EEEecC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM-KCSWGS 231 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l-~v~~a~ 231 (320)
.-|-|.+.++.- -..|..+|++|| +|.+....+...+-.|.|.+.-+|++|+.. ||+ .|+|..+ -|.-+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG--~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~---ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCG--EVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGT---IIDGDVMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhC--eeeeeecCCCCceEEEEecchhHHHHhhhh-cCe---eeccceEEeeeecC
Confidence 345555666643 356788999999 999998887778999999999999999986 888 7877554 355543
No 208
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.16 E-value=0.14 Score=41.69 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=49.2
Q ss_pred eEEEECCCCccCcHHHHHHHHhc-cCCccE---EEEE--eeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHS-LGAGVI---EEVR--VQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~-~G~~~i---~~~~--~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
.+|.|++||+.+|++++.+.++. ++ .. ..+. .... ...|+|.|.+.++...-...++|. .|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~--~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~---~F~D 82 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLP--DEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH---VFVD 82 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--S--SE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE---EEE-
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcc--cccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc---EEEC
Confidence 68999999999999999998887 66 33 2222 1111 357999999999999999999997 5432
Q ss_pred -----eEeEEEecCC
Q 020844 223 -----KQMKCSWGSK 232 (320)
Q Consensus 223 -----~~l~v~~a~~ 232 (320)
.+..|.||--
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 4456777643
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.50 E-value=0.095 Score=51.40 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
.+.++.|.+-..+-.-|..+|+.|| .+.+.+.+|+-..+.|+|.+.+.|..|+.+++|+..+ ..|-+.+|.|++.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDLNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhc--chhhheecccccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEecccc
Confidence 3444556666777888999999999 9999999999999999999999999999999999432 34567899998754
No 210
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.16 E-value=0.25 Score=39.62 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=62.4
Q ss_pred eEEEECCCCccCc-----HHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCe-EeEEE
Q 020844 155 TTVYVGNLAPEVT-----QLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK-QMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t-----~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~-~l~v~ 228 (320)
.++.+.+++..+- ....+.+|.+|- +.....+.|+.+...|.|.+.+.|..|.-.++.. .|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~---~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLRSFRRVRINFSNPEAAADARIKLHST---SFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHHhhceeEEeccChhHHHHHHHHhhhc---ccCCCceEEEE
Confidence 4577777877652 234567788886 7777788888899999999999999999999999 99998 88888
Q ss_pred ecCCCCCCCC
Q 020844 229 WGSKPTPPGT 238 (320)
Q Consensus 229 ~a~~~~~~~~ 238 (320)
|+........
T Consensus 86 faQ~~~~~~~ 95 (193)
T KOG4019|consen 86 FAQPGHPESN 95 (193)
T ss_pred EccCCCcccc
Confidence 8876555443
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.15 E-value=0.66 Score=31.76 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=35.1
Q ss_pred cCcHHHHHHHhccCCC-----eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 44 EVTDATLFACFSVYPS-----CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 44 ~~te~~l~~~F~~~G~-----i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.++..+|..++..-+. |-.|+|..+ |.||+-... .|..+++.|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788888888876644 446777544 899988665 788899999999999999999864
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.29 E-value=1.5 Score=40.22 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=56.7
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
++.|+|-.+|..++-.||..++..+- ..|.++++.|+ +-..+|.|.+.++|..-.+.+||+ .|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~-~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk---~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI-KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGK---QFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh-hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCC---cCCC
Confidence 47788989999999999999999875 58999999987 346899999999999999999999 6653
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.17 E-value=2 Score=29.31 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=36.1
Q ss_pred cCcHHHHHHHHhccC---CccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 165 EVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 165 ~~t~~~l~~~F~~~G---~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
.++..+|..++...+ ...|-.+.+... |.||+-... .|..+++.|++. .+.|+.++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~~-~a~~v~~~l~~~---~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPEE-VAEKVLEALNGK---KIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-TT--HHHHHHHHTT-----SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECHH-HHHHHHHHhcCC---CCCCeeEEEEEC
Confidence 567777777776653 346777887765 899988764 788899999999 999999999754
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.06 E-value=0.3 Score=34.64 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=44.5
Q ss_pred EEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceE
Q 020844 78 GFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156 (320)
Q Consensus 78 afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (320)
|+|+|.+++-|++.+..- +...+.++.+.|...--.......- . -......++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~---------q-----------------v~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF---------Q-----------------VFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE---------E-----------------EEEcccCCE
Confidence 689999999999999431 1224566666665332111110000 0 001122378
Q ss_pred EEECCCCccCcHHHHHHHHh
Q 020844 157 VYVGNLAPEVTQLDLHRHFH 176 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~ 176 (320)
|.|.|||..+++++|++..+
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999997655
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.48 E-value=1.9 Score=28.79 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=43.8
Q ss_pred cCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020844 165 EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 165 ~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++-++++..+..|+ -.+|...+ --=||.|.+.++|+++....|+. .+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~--tGfYIvF~~~~Ea~rC~~~~~~~---~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR--TGFYIVFNDSKEAERCFRAEDGT---LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC--CEEEEEECChHHHHHHHHhcCCC---EEEEEEEEe
Confidence 568899999999996 55555443 24489999999999999999999 787777654
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.55 E-value=2.2 Score=40.45 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCceeEEEcCCCcc-CcHHHHHHHhccC----CCeeEEEEeecC----------CCCC---------------------
Q 020844 30 TSGHFNIFVGDLSPE-VTDATLFACFSVY----PSCSDARVMWDQ----------KTGR--------------------- 73 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~----------~~g~--------------------- 73 (320)
....++|-|-||.|+ +...||.-+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999986 7888999999876 699999987521 1121
Q ss_pred ----------------ccceEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEec
Q 020844 74 ----------------SRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQIRCNWA 110 (320)
Q Consensus 74 ----------------~~G~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a 110 (320)
--=||.|+|.+.+.|....+.++|..+. +..+.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1237899999999999999999999985 445555543
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.49 E-value=5.1 Score=34.67 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCH
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 202 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~ 202 (320)
-..-|+++||+.++.-.||+..+.+-|+ .-.++.+..+.|-||+.|-+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCC-CceeEeeecCCcceeEecCCc
Confidence 3466999999999999999999999885 455666667789999999764
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.37 E-value=12 Score=35.71 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred CCCCcceEEEECCCCcc-CcHHHHHHHHhccCC--ccEEEEEeeCC----------------------------------
Q 020844 149 ENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGA--GVIEEVRVQRD---------------------------------- 191 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~--~~i~~~~~~~~---------------------------------- 191 (320)
.-...+++|-|-||+++ +...+|..+|+.|=+ +.|.+|.|..+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 33556789999999995 688899999887721 37888887522
Q ss_pred -------------------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE--eEEEec
Q 020844 192 -------------------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKCSWG 230 (320)
Q Consensus 192 -------------------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~--l~v~~a 230 (320)
--||.|+|.+.+.|.......+|. ++.... |-++|-
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~---EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI---EFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc---eeccccceeeeeec
Confidence 137999999999999999999999 887644 445554
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=77.94 E-value=2 Score=33.69 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=55.2
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcce
Q 020844 76 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155 (320)
Q Consensus 76 G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
++..+.|.+.+++.++++ .....+.|..+.+..-++......... .....
T Consensus 56 ~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~-----------------------------~~~~v 105 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKF-----------------------------EHIPV 105 (153)
T ss_pred CeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccce-----------------------------eccch
Confidence 588999999999999994 355566777777664443221111000 00013
Q ss_pred EEEECCCCccC-cHHHHHHHHhccCCccEEEEEeeC
Q 020844 156 TVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQR 190 (320)
Q Consensus 156 ~l~V~nl~~~~-t~~~l~~~F~~~G~~~i~~~~~~~ 190 (320)
-|.|.|||... +++.++.+.+.+| .+.++....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG--~~i~vD~~t 139 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIG--EPIEVDENT 139 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcC--CeEEEEcCC
Confidence 46677999974 7888999999999 788776653
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.22 E-value=3.4 Score=31.09 Aligned_cols=55 Identities=13% Similarity=0.340 Sum_probs=30.7
Q ss_pred eEEEcCCCcc---------CcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCH-HHHHHHH
Q 020844 35 NIFVGDLSPE---------VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ-QDAQSAI 92 (320)
Q Consensus 35 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~-~~A~~A~ 92 (320)
.+.|-|++.+ .+.++|++.|+.|..++ ++.+.++ ..++|+++|+|.+. .--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4566677544 35678999999998875 6676664 36889999999653 3344444
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=8.4 Score=35.02 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCe-eEEEEeecCCCCCccceEEEEecCHHHHHHHHH
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~ 93 (320)
--+-|-|-++|.....+||...|+.|+.- -+|+++-|. .+|..|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 45688999999999999999999999653 568888775 69999999999999994
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.21 E-value=13 Score=30.02 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=52.3
Q ss_pred eeEEEcCCCccCcH-----HHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe-eEEE
Q 020844 34 FNIFVGDLSPEVTD-----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIRC 107 (320)
Q Consensus 34 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~-~l~v 107 (320)
..+.+.+++..+-. ....++|..|-+....++++ +.++--|.|.+++.|..|.-.+++..+.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45677777765422 23445666665555444443 334567899999999999999999999888 7777
Q ss_pred EeccCCCC
Q 020844 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
-++.+...
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 77766543
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.53 E-value=4.1 Score=35.08 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=45.8
Q ss_pred ceeEEEcCCCcc------------CcHHHHHHHhccCCCeeEEEEee-----cCCCCCc-----cceEE---------EE
Q 020844 33 HFNIFVGDLSPE------------VTDATLFACFSVYPSCSDARVMW-----DQKTGRS-----RGFGF---------VS 81 (320)
Q Consensus 33 ~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~i~~-----~~~~g~~-----~G~af---------V~ 81 (320)
..+|++.+||-. -+|+-|+..|+.||.|..|.|+. ...+|+. +||+| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 458999999954 36788999999999999887753 3334544 44544 44
Q ss_pred ecCHHHHHHHHHHhCCCee
Q 020844 82 FRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~ 100 (320)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 4444555566667766544
No 224
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.71 E-value=4.3 Score=34.92 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=22.5
Q ss_pred eEEEECCCCcc------------CcHHHHHHHHhccCCccEEEEEee
Q 020844 155 TTVYVGNLAPE------------VTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 155 ~~l~V~nl~~~------------~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
.+||+.+||-. -+++.|+..|+.|| .|..|.|+
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg--~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFG--EIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhc--cceecCCc
Confidence 45666666532 35788999999999 55555543
No 225
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=62.99 E-value=3.7 Score=37.31 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=53.0
Q ss_pred CceeEEEcCCCccCcHH--------HHHHHhcc--CCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHH
Q 020844 32 GHFNIFVGDLSPEVTDA--------TLFACFSV--YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~--------~l~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~ 93 (320)
..|.+|+.+.+...+.+ ++...|.+ .+++..++..++.....++|.-|++|+..+.++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 35789999998776666 99999988 6788888888887788899999999999999999873
No 226
>PRK11901 hypothetical protein; Reviewed
Probab=62.88 E-value=27 Score=31.16 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=43.8
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEE--EecCHHHHHHHHHHhCC
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFV--SFRNQQDAQSAINDLTG 97 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV--~f~~~~~A~~A~~~l~~ 97 (320)
+....+|-|..+ -+++.|..|...++ +..+++.+...+|+. .|..| .|.+.++|..|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 344567766654 45778888888775 466777766555543 35443 89999999999988753
No 227
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.02 E-value=4.6 Score=28.68 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=21.4
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHh
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACF 54 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F 54 (320)
....++|.|.|||...+|++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3457799999999999999998765
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.86 E-value=17 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=15.9
Q ss_pred HHHHHHhccCCCeeEEEEe
Q 020844 48 ATLFACFSVYPSCSDARVM 66 (320)
Q Consensus 48 ~~l~~~F~~~G~i~~v~i~ 66 (320)
.+||++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999866654
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.62 E-value=14 Score=27.79 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=26.5
Q ss_pred EEEECCCCccC---------cHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCC-HHHHHHHH
Q 020844 156 TVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYST-HAEAALAI 209 (320)
Q Consensus 156 ~l~V~nl~~~~---------t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~-~~~A~~A~ 209 (320)
++.|-|++.+. +.++|++.|+.|.+.++..+.-..+ .|+++|+|.+ ..--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 35556665433 4578999999998555444422222 6899999976 33334444
No 230
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=57.57 E-value=22 Score=23.83 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHhccCCC-eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020844 48 ATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 48 ~~l~~~F~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
++|++-|...|. |.++.-++.+.++...-.-||+.+...+... .++=+.+.+..+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 467777877774 6777777776667777788898887766333 34455678899999876553
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=56.74 E-value=1.6 Score=41.25 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=54.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020844 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
..++||++|++++++-.+|..++..+--+..+-+-....-.....++.|+|+---....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45789999999999999999999988655555443332234566788999998888888888888876643
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.45 E-value=21 Score=31.01 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=36.6
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHH
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 86 (320)
.+-|+++|||.++.-.||+..+.+-|-+ -..|-. .-++|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCcc
Confidence 5679999999999999999999887644 223322 235678999997654
No 233
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=55.25 E-value=21 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=57.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCC-------------cEEEEEeCCHHHHHH----HHHHcCCC
Q 020844 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK-------------GFGFVRYSTHAEAAL----AIQMGNTT 215 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~-------------g~afV~f~~~~~A~~----A~~~l~~~ 215 (320)
.++.|...|+..+++-..+...|-+|| .|+++.+..+. ....+.|-+.+.+.. .++.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~--pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFG--PIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccC--ceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999999 99999998764 678899999887654 23333322
Q ss_pred CcccccCeEeEEEecC
Q 020844 216 QSSYLFGKQMKCSWGS 231 (320)
Q Consensus 216 ~~~~~~g~~l~v~~a~ 231 (320)
...+....|+++|..
T Consensus 92 -K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 -KTKLKSESLTLSFVS 106 (309)
T ss_pred -HHhcCCcceeEEEEE
Confidence 113677888888764
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=54.09 E-value=22 Score=23.84 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred HHHHHHhccCCC-eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020844 48 ATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 48 ~~l~~~F~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
.+|++-|...|. +..+.-++.+.++.....-||+.....+-.. .|+=+.+.|+++.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 467788888874 6778777776666666677888877654433 34555678999999866543
No 235
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.46 E-value=2.3 Score=39.04 Aligned_cols=77 Identities=8% Similarity=-0.183 Sum_probs=61.8
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+.+.|+..+|...+++++.-+|..||.|..+.+-+..+.+..+-.+||.-.. .++..++..+.-+.++|..+++..+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 4567889999999999999999999999988887766667777788887655 4667888777777777877777665
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=50.19 E-value=23 Score=28.60 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=41.0
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCC--CccceEEEEecCHHHHHHHHHH
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAIND 94 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~A~~~ 94 (320)
...|++|.. +.+..-++|..+-+ |.+..+.+-+.. .+ ..+|--||+|.+.+.|..+++.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 346777777 33344444444444 788888776543 34 6789999999999999998865
No 237
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.27 E-value=22 Score=32.26 Aligned_cols=68 Identities=15% Similarity=0.312 Sum_probs=47.6
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCC-eeEEEEeecCC--CCCccceEEEEecCHHHHHHHHHHhCCCee
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQK--TGRSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~--~g~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
...|.|++||+..++.+|.+-..++-. +.......... ...-.+.+||.|...++.....+.++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457999999999999999988877632 22222211100 012356789999999998888888888755
No 238
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=48.56 E-value=14 Score=31.25 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=29.6
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEE
Q 020844 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 63 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 63 (320)
......+||+-|+|..+||+.|.++.+.+|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44557799999999999999999999999866543
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.70 E-value=40 Score=30.85 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHH
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 211 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 211 (320)
.+.|=|-++|.....+||...|+.|+. .=.+|+++. .-.+|-.|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 477889999999999999999999973 333444443 45799999999999999864
No 240
>PF14893 PNMA: PNMA
Probab=46.09 E-value=15 Score=33.03 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=35.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHh----ccCCCeeEE-EEeecCCCCCccceEEEEecCHHH
Q 020844 30 TSGHFNIFVGDLSPEVTDATLFACF----SVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQD 87 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F----~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~ 87 (320)
-+..+.|.|.+||.+|++++|.+.+ .+.|...-. ++++. .. +..-++|+|...-+
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~-~~--~~~aalve~~e~~n 74 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRR-EE--NAKAALVEFAEDVN 74 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhh-hc--ccceeeeecccccc
Confidence 3456789999999999999988766 455665322 22222 11 23368888876544
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.52 E-value=71 Score=22.03 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.2
Q ss_pred EEECCCCccCcHHHHHHHHhc-cCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHH
Q 020844 157 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 211 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~~-~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~ 211 (320)
-|+..++.+.+..+|++.++. || +.|.++....- .--|||++..-++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~-VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFD-VKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 555568999999999999997 55 68888877643 34699999888877776543
No 242
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=44.15 E-value=59 Score=24.35 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=29.5
Q ss_pred ccCcHHHHHHHhcc-CCCeeEEEEe----ecCCCCCccceEEEEecCHHHHHHH
Q 020844 43 PEVTDATLFACFSV-YPSCSDARVM----WDQKTGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~i~~v~i~----~~~~~g~~~G~afV~f~~~~~A~~A 91 (320)
.+++.+||++-+++ |-.-.++.++ ..--.|++.|||.| |.+.+.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 36788899987754 4322222222 22234789999988 7887776543
No 243
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=42.21 E-value=63 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=29.1
Q ss_pred cCcHHHHHHHh-ccCCCeeEEEEeecCCC----CCccceEEEEecCHHHHHHH
Q 020844 44 EVTDATLFACF-SVYPSCSDARVMWDQKT----GRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 44 ~~te~~l~~~F-~~~G~i~~v~i~~~~~~----g~~~G~afV~f~~~~~A~~A 91 (320)
+.+-.+|++-+ +.|+.=.+..++..-.| |.++|||.| |.+.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 56777887766 44554334444433233 578888887 8888876654
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.93 E-value=51 Score=29.45 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.1
Q ss_pred EEEEecCHHHHHHHHHHhCC
Q 020844 78 GFVSFRNQQDAQSAINDLTG 97 (320)
Q Consensus 78 afV~f~~~~~A~~A~~~l~~ 97 (320)
|||+|++..+|..|.+.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999975443
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.97 E-value=73 Score=22.40 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEECCCCccCcHHHHHHHHhc-cCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHH
Q 020844 157 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQM 211 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~~-~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~ 211 (320)
-|+..++.+.+..+|++.++. || +.|.+|+...- ..-|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~-VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFD-VKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 444557899999999999997 55 68888877644 34699999988888776543
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.78 E-value=34 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020844 195 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 195 afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
|||+|++..+|..|.+.+... ..+.+++..|-++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~-----~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK-----RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC-----CCCCceEeeCCCc
Confidence 799999999999999976655 2355566655433
No 247
>PF14893 PNMA: PNMA
Probab=39.26 E-value=30 Score=31.18 Aligned_cols=70 Identities=10% Similarity=0.176 Sum_probs=42.1
Q ss_pred eEEEECCCCccCcHHHHHHHHh----ccCCccEEEEEeeCC--CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFH----SLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~----~~G~~~i~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
+.|.|.+||.+|++++|++.+. +.|...|....+.+. ...++|+|...-+-...=..+-|. |..-+|-
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g~------gg~W~Vv 92 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPGK------GGPWRVV 92 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCCC------CCceEEE
Confidence 6799999999999998877655 456334444333333 356888887643322222222322 5666666
Q ss_pred ec
Q 020844 229 WG 230 (320)
Q Consensus 229 ~a 230 (320)
|.
T Consensus 93 ~~ 94 (331)
T PF14893_consen 93 FK 94 (331)
T ss_pred ec
Confidence 54
No 248
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=37.09 E-value=1.3e+02 Score=20.30 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=32.1
Q ss_pred HHHHHHHhccCCccEEEEEeeCC--CcEEEEEeCCHHHHHHHHHHcC
Q 020844 169 LDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 213 (320)
Q Consensus 169 ~~l~~~F~~~G~~~i~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~ 213 (320)
.++.+.+..+| +....+... -++.|+.+.+.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G---a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG---ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT---ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777778887 555666665 6789999989999998888764
No 249
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.46 E-value=83 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=24.6
Q ss_pred ccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 181 GVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 181 ~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
..|.++-...+ +||-||+=.+.++...|++.+.+.
T Consensus 32 l~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 32 LNIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ----EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36777766665 999999999999999999876644
No 250
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.64 E-value=1.5e+02 Score=27.49 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=53.3
Q ss_pred CCCceeEEEcCCCcc-CcHHHHHHHhccC----CCeeEEEEeecCC----------CC----------------------
Q 020844 30 TSGHFNIFVGDLSPE-VTDATLFACFSVY----PSCSDARVMWDQK----------TG---------------------- 72 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~~----------~g---------------------- 72 (320)
.++..+|-|-||.|+ +...+|.-.|+.| |.|..|.|....- .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456778999999986 7888998888765 6777777653100 00
Q ss_pred ----C----------c-------------------cceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020844 73 ----R----------S-------------------RGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 73 ----~----------~-------------------~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
+ - --||.|++.+.+.+......++|..+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 0 0 2278899999999999999999987753
No 251
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=31.52 E-value=2.4e+02 Score=21.70 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=28.5
Q ss_pred cCcHHHHHHHhc-cCC-CeeEEEEeecCC----CCCccceEEEEecCHHHHHHH
Q 020844 44 EVTDATLFACFS-VYP-SCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 44 ~~te~~l~~~F~-~~G-~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~A 91 (320)
..+-.||++-+. .|+ .=.+..++..-. .|.+.|||.| |.+.+.+...
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 567788888774 456 222333332222 3678888887 7887776544
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.42 E-value=56 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.3
Q ss_pred ccceEEEEecCHHHHHHHHHHhCCC
Q 020844 74 SRGFGFVSFRNQQDAQSAINDLTGK 98 (320)
Q Consensus 74 ~~G~afV~f~~~~~A~~A~~~l~~~ 98 (320)
.+||-|||=.+..++.+|++.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 7899999999999999999776544
No 253
>PRK10905 cell division protein DamX; Validated
Probab=30.24 E-value=91 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=38.4
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE--EEEecCHHHHHHHHHHhC
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG--FVSFRNQQDAQSAINDLT 96 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a--fV~f~~~~~A~~A~~~l~ 96 (320)
..+.+|.|..+. +++.|+++..+.| +....+.....+|+. .|- +=.|.+.++|++|+..|-
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCC
Confidence 345566665554 5577777777765 344445444444542 233 348999999999998874
No 254
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=4.6e+02 Score=25.85 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCH--HHHHHHHHHhC--CCe------eCCeeEEEEe
Q 020844 40 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLT--GKW------LGSRQIRCNW 109 (320)
Q Consensus 40 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~--~~A~~A~~~l~--~~~------~~g~~l~v~~ 109 (320)
+.++..-.++|.+.|..-+.|..+.+.- =+||.|.-. --+....+.+. +.. -.|++|.|++
T Consensus 53 ~~~P~eiA~~i~~~l~~~~~~~~veiaG---------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~ 123 (577)
T COG0018 53 GKNPREIAEEIAEKLDTDEIIEKVEIAG---------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEY 123 (577)
T ss_pred CCCHHHHHHHHHHhccccCcEeEEEEcC---------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEE
Confidence 3344444556666666655677777742 245555333 23333323332 121 2578999999
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020844 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+.+... ..++||.+=..+--+-|-.+++..| ..|+.....
T Consensus 124 sSaNpt---------------------------------------kplHiGHlR~aiiGDsLaril~~~G-y~V~r~~yv 163 (577)
T COG0018 124 SSANPT---------------------------------------GPLHIGHLRNAIIGDSLARILEFLG-YDVTRENYV 163 (577)
T ss_pred eCCCCC---------------------------------------CCcccchhhhhHHHHHHHHHHHHcC-CCeeEEeeE
Confidence 876432 3499999998888899999999999 467766666
Q ss_pred CC
Q 020844 190 RD 191 (320)
Q Consensus 190 ~~ 191 (320)
.|
T Consensus 164 nD 165 (577)
T COG0018 164 ND 165 (577)
T ss_pred Cc
Confidence 55
No 255
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.61 E-value=1.5e+02 Score=20.96 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEe
Q 020844 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 82 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f 82 (320)
+...-|||++++..+-|.-...+.+..+.-.-+-+..+ ....||.|-..
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEe
Confidence 34557999999999988877766665544433333333 22889999776
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.85 E-value=72 Score=29.11 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=43.8
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--------~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
..+.|.+||+.++++++.+...++- ..+-...+... .+.++|.|...++...-...++|.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 6789999999999999999988875 23333333311 467999999999866665666665
No 257
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.29 E-value=52 Score=18.99 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=10.4
Q ss_pred ccCcHHHHHHHHhccC
Q 020844 164 PEVTQLDLHRHFHSLG 179 (320)
Q Consensus 164 ~~~t~~~l~~~F~~~G 179 (320)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999999764
No 258
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.89 E-value=57 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred eEEEECCCCccCcHHHHHHHHhccC
Q 020844 155 TTVYVGNLAPEVTQLDLHRHFHSLG 179 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G 179 (320)
.+||+-|+|..++++.|.++.+.+|
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhh
Confidence 6899999999999999999999998
No 259
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.02 E-value=3.3e+02 Score=20.77 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=48.3
Q ss_pred EEEECCCCcc---CcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020844 156 TVYVGNLAPE---VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 156 ~l~V~nl~~~---~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
.|.|...... .+-..+++..+.-| ..++++... .+...|.|.+.++-.+|.+.|... --++..+.++.+
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~---L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRT---LPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEee--CCEEEEEECCHHHHHHHHHHHHHH---cCCCCEEEEecC
Confidence 4666655333 46678889999887 455555444 458999999999999999988877 334456666654
No 260
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.66 E-value=2.7e+02 Score=19.67 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCccEEEEEeeCCC--cEEEEEeCCHHHHHHHHHHcCCC
Q 020844 168 QLDLHRHFHSLGAGVIEEVRVQRDK--GFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 168 ~~~l~~~F~~~G~~~i~~~~~~~~~--g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
.+.++++++.+| ++++++.+..+. -...+++-|.+.|.++.-.+...
T Consensus 22 ~~a~~~~~e~~G-g~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~ 70 (91)
T PF08734_consen 22 AEAVRALIEALG-GKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSS 70 (91)
T ss_pred HHHHHHHHHHcC-CEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcC
Confidence 456888899998 588888877663 46778888888888776555543
No 261
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=23.08 E-value=4.7e+02 Score=25.45 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCc
Q 020844 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119 (320)
Q Consensus 72 g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 119 (320)
-..+|-|.| |.++++|.+|+.. +..-.|.-|.+.|..++..+..+
T Consensus 380 ~~~~G~A~V-F~see~a~~ai~~--g~i~~gdVvViRyeGPkGgPGMp 424 (535)
T TIGR00110 380 TKFEGPAKV-FESEEEALEAILG--GKIKEGDVVVIRYEGPKGGPGMP 424 (535)
T ss_pred cEEEEeEEE-ECCHHHHHHHHhc--CCCCCCeEEEEeCCCCCCCCChh
Confidence 345666765 9999999999964 77778888999988887554433
No 262
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.43 E-value=1.7e+02 Score=21.17 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=28.1
Q ss_pred eEEEcCCCccCcHHHHH---HHhccCCCeeEEEEee----cCCCCCccceEEEEe
Q 020844 35 NIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMW----DQKTGRSRGFGFVSF 82 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~----~~~~g~~~G~afV~f 82 (320)
..|+.+||.++.+..+. ..|..+.. ++.|.. ....+.+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~--~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP--DVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS--EEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC--CeEEEEecccCccCCCCCceEEEEE
Confidence 46899999999988765 45555543 344433 234566777775543
No 263
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=21.09 E-value=5.1e+02 Score=25.88 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=39.5
Q ss_pred ceeEEEcCCCccCcHHHHHHHhcc---CCCeeEEEEeecCCCCCccceEE-EEecCHHHHHHHHHHhC
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGF-VSFRNQQDAQSAINDLT 96 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~---~G~i~~v~i~~~~~~g~~~G~af-V~f~~~~~A~~A~~~l~ 96 (320)
..+|.|..||+.++.+.|.+.... -|.+. |.=++|. |.. +.-| |++.....++..+..|-
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~--~v~i~i~l~~~~~~~~~~~~Ly 283 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE--NVEIEIKLPRGVYASEVIEALY 283 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC--cEEEEEEECCCCCHHHHHHHHH
Confidence 358999999999999988876542 35655 5555663 332 4554 56776666666665543
No 264
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=21.07 E-value=80 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=16.7
Q ss_pred ccCCCceEEEecccCCCCcCCCCceeEEEcCCCccC
Q 020844 10 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEV 45 (320)
Q Consensus 10 ~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~ 45 (320)
.++|+||.|.|..+..+.. ...|+|-.||...
T Consensus 33 ~~D~~Pl~VeWRtp~gr~r----~s~vWlcdLP~~s 64 (102)
T PF07711_consen 33 FVDGSPLTVEWRTPDGRNR----PSHVWLCDLPAGS 64 (102)
T ss_dssp EESSSEE----B-TTSS------SEEEEEEE--GGG
T ss_pred EEcCCceEEEeeCCCCCCC----cCeEEEEeCCccc
Confidence 4568999999998765322 2379999999764
No 265
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=20.82 E-value=1.8e+02 Score=27.38 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred eeEEEcCCCccCcHHHHHHHhccC---CCeeEEEEeecCCCCCccceEE-EEecCHHHHHHHHHHhC
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVY---PSCSDARVMWDQKTGRSRGFGF-VSFRNQQDAQSAINDLT 96 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~G~af-V~f~~~~~A~~A~~~l~ 96 (320)
.+|.|..||..++-+++++.+... |.|. |.=++|. +.. |+-| |+++...+++..++.|.
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~L~ 279 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEGLY 279 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHHHH
Confidence 699999999999888887766543 6777 6666774 444 6666 57777656666665543
No 266
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.80 E-value=20 Score=34.15 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=45.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCC
Q 020844 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
.++||+.|+++.++-.+|..+|..+- -+..+-+... ..+..|+|+-.-.-..|+.+||+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~--~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIP--GFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCc--hheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 47899999999999999999999885 3333333322 457889998766677777777776
No 267
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.66 E-value=1.1e+02 Score=22.82 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCccCcHHHHHHHhcc---CCCeeEEEEeecCCCCCccceEEEEecCHH
Q 020844 41 LSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 86 (320)
Q Consensus 41 Lp~~~te~~l~~~F~~---~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 86 (320)
-|..+|-.+++++|+. |--|..-.+.+|-.-.-+-..||..|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 3567899999999964 444444444444222234457888887653
No 268
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.64 E-value=4.3e+02 Score=25.09 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=37.8
Q ss_pred ceeEEEcCCCccCcHHHHHHHhcc---CCCeeEEEEeecCCCCCccceEE-EEecCHHHHHHHHHHh
Q 020844 33 HFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGF-VSFRNQQDAQSAINDL 95 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~---~G~i~~v~i~~~~~~g~~~G~af-V~f~~~~~A~~A~~~l 95 (320)
.++|.|..||..++.+++.+.+.. -+.+..|.=++|. +.+ .|+-| |+++....++..+..|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~-s~~-~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDE-SDR-EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeec-cCC-CceEEEEEECCCccHHHHHHHH
Confidence 468999999999998888876643 2334334344553 222 25666 4666666665555444
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.63 E-value=1.4e+02 Score=19.96 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020844 77 FGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 77 ~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+.+|.|.+..+|.+|-+.|...-+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999988765544333
No 270
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.62 E-value=2.3e+02 Score=17.77 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=40.6
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCH----HHHHHHHHH
Q 020844 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH----AEAALAIQM 211 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~----~~A~~A~~~ 211 (320)
++.|.|+.=.--...|++.+...- .|.++.+....+.+-|.|... +....+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~--GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP--GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCC--CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 466777777667788888888885 689999998889999999754 444445443
No 271
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.40 E-value=2e+02 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=24.2
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEE
Q 020844 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARV 65 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 65 (320)
-...|+|||+++|-.-|..+++..-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 35679999999999999999876544433333
No 272
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=20.27 E-value=2e+02 Score=20.57 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.7
Q ss_pred CCCccCcHHHHHHHHhccCCccEEEEEeeCC--CcEEEEEeCCHHHHHHHHHHcC
Q 020844 161 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 213 (320)
Q Consensus 161 nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~ 213 (320)
.+.+.++...|...|-.-|- +-+-..+-+| +.+|.|+|.+.+.+..|...|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gk-k~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGK-KNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCc-ccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 35667788888888877772 3333344445 7899999999999999887664
No 273
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.22 E-value=1.5e+02 Score=22.87 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=32.7
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhcc
Q 020844 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV 56 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~ 56 (320)
++..|.|+.+.|++|+|..-.... +.....-|||+.-. ...+.+++..
T Consensus 41 ~L~~l~~~~~~~~~i~v~~~~~~~---~~~~C~ilyi~~~~----~~~~~~i~~~ 88 (145)
T PF13689_consen 41 ALSTLAGKQVGGRPIRVRRLSSPN---EISGCHILYISSSE----SSQLPEILRK 88 (145)
T ss_pred HHHHhhhcccCCCcEEEEECCCCc---ccccccEEEECCCC----hHHHHHHHHh
Confidence 467789999999999999874322 23556789998554 4444444443
Done!