BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020845
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 129/246 (52%), Gaps = 23/246 (9%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAP-ALCVAACELVGGHRE 101
++YWT++ +I L +A+ VK P +YE MR+ V A AP +CVAACEL GG R
Sbjct: 48 RTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRL 107
Query: 102 QAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE 161
A A AL ++HAAS IH++LP D + + KP+ + + +L DA+ P +
Sbjct: 108 AAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQ 166
Query: 162 LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEM 221
+ S P ILR++ E+ R +GS G+ GQY +L+ G +
Sbjct: 167 HIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLE-----------GGPFPLSF 215
Query: 222 TYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281
E KK G + C A CG +LGG +E E++ LRRYG VGM+ +V ++I E
Sbjct: 216 VQE---KKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVV-------DDITE 265
Query: 282 LKKLAF 287
KK ++
Sbjct: 266 DKKKSY 271
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 148/290 (51%), Gaps = 27/290 (9%)
Query: 12 AHVAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLR 58
+ + P+ N RP + P+ V+ +T P K Y T + L
Sbjct: 38 SKINPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALD 94
Query: 59 QAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASF 118
+A++VKEP ++E MR+ + A + P LC+AACELVGG++E A+ AA A+ ++H S
Sbjct: 95 EAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSL 154
Query: 119 IHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRIL 178
IH++LP D L + KPT + + + +L D++L F E + +S AG RI+
Sbjct: 155 IHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIV 211
Query: 179 RVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGA 238
+ E+ +++G++G+V GQ +++C+ N +E + K L
Sbjct: 212 GAVAELAKSIGTEGLVAGQVADIKCTG--------NASVSLETLEFIHVHKTAALLESSV 263
Query: 239 ACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFK 288
GAILGGG+ E+E LRR+ +G++ +V L T+ EEL K A K
Sbjct: 264 VLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGK 313
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 135/245 (55%), Gaps = 7/245 (2%)
Query: 44 SYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQA 103
SY + E + L AV ++EP++++E MR+ + A + P LC+AACELVGG A
Sbjct: 78 SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137
Query: 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163
+ AA A+ ++H S IH++LP D L + KPT + F + +L DA+L F E L
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHL 196
Query: 164 ASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTY 223
AS+ + + R++R + E+ +A+G++G+V GQ ++ D +D L + + +
Sbjct: 197 ASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHL-- 254
Query: 224 ETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELK 283
K L A GAI+GGGS+ EIE LR++ +G++ +V L T+ +EL
Sbjct: 255 ----HKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELG 310
Query: 284 KLAFK 288
K A K
Sbjct: 311 KTAGK 315
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 14/247 (5%)
Query: 44 SYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQA 103
SY + L AV ++EP++++E +R+ + A + P LC+AACELVGG A
Sbjct: 57 SYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVA 116
Query: 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163
+ AA A+ ++H S IH++LP D L + KPT + F + +L DA++ F E L
Sbjct: 117 LPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALISFAFEHL 175
Query: 164 ASSD--NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEM 221
A+S +PA R++R + E+ +A+GS+G+V GQ +L D +D L E+
Sbjct: 176 ATSTAVSPA-----RVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGL------EV 224
Query: 222 TYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281
+ K L GAI+GGGS++E+E LRR+ +G++ +V L T+ EE
Sbjct: 225 LEFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEE 284
Query: 282 LKKLAFK 288
L K A K
Sbjct: 285 LGKTAGK 291
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 133/246 (54%), Gaps = 11/246 (4%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
KSY I L A+ ++EP +++E MR+ + A + PALC+AACELVGG+
Sbjct: 80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSM 139
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162
A+ AA A+ ++H S IH++LP D L + KPT + F + +L DA+L F E
Sbjct: 140 AMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEH 198
Query: 163 LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMT 222
+A S +S RI+R + E+ +A+G++G+V GQ ++ + D+E
Sbjct: 199 IAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSE--------VDLEKL 248
Query: 223 YETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282
+ K +L GAILGGG+++E+E LR+Y +G++ +V L T+ +EL
Sbjct: 249 EFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQEL 308
Query: 283 KKLAFK 288
K A K
Sbjct: 309 GKTAGK 314
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 18/283 (6%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
K Y S E I L +A+ + EP+ +++ MR+ + A + P LC+AACELVGG
Sbjct: 82 KPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERL 141
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162
AI AA A+ ++H S I ++LP D L + KPT + F + +L A+L E
Sbjct: 142 AIQAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVFGESVAILSGGALLALAFEH 200
Query: 163 LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMT 222
L +D +S +++R + E+ +++G++G+V GQ +L + +D G+ D+E
Sbjct: 201 LTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQND---VGLEDLEY- 252
Query: 223 YETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282
+ K G L A GA++GGG+EKEIE +R + +G++ +V L T+ EEL
Sbjct: 253 --IHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEEL 310
Query: 283 KKLAFKLREVNSFN-------DENAEVIFSLVDDNITHVLGFN 318
K A K + +++ E + L D H+ GF+
Sbjct: 311 GKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFD 353
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 134/245 (54%), Gaps = 8/245 (3%)
Query: 44 SYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQA 103
SY + + L AV ++EP++++E MR+ + A + P LC+AACELVGG A
Sbjct: 74 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLA 133
Query: 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163
+ A A+ ++H S IH++LP D L + KPT + + + +L DA+L F E L
Sbjct: 134 MPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHL 192
Query: 164 ASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTY 223
AS+ + + + R++R + E+ +A+G++G+V GQ ++ D LN + + +
Sbjct: 193 ASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLD-----LNNVGLEHLKF 246
Query: 224 ETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELK 283
K L A A G I+GGGS++EIE LR++ +G++ +V L T+ +EL
Sbjct: 247 IHLHKTAALLEA-SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELG 305
Query: 284 KLAFK 288
K A K
Sbjct: 306 KTAGK 310
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 136/248 (54%), Gaps = 15/248 (6%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
K+Y + L AV+V+EP++++E MR+ + A + P LC+AACEL GG
Sbjct: 67 KAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESV 126
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162
A+ +A A+ ++H S +H++LP D L + KPT + F + +L DA+L F E
Sbjct: 127 AMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEH 185
Query: 163 LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMT 222
+A++ G +S RI+RV+ E+ + +GS+G+V GQ ++ CS+ GI DV +
Sbjct: 186 IATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSE---------GIADVGLE 233
Query: 223 YETY--KKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280
+ + K L GAI+GG ++++I LR++ +G++ +V L T+ +
Sbjct: 234 HLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQ 293
Query: 281 ELKKLAFK 288
EL K A K
Sbjct: 294 ELGKTAGK 301
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 144/281 (51%), Gaps = 18/281 (6%)
Query: 45 YWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAI 104
Y S E + L +A+ V EP++++E MR+ + AA + P LC+A+CELVGG A+
Sbjct: 88 YMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAM 147
Query: 105 VAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLA 164
AA A+ ++H S I ++LP D L + KPT + + +L A+L E +
Sbjct: 148 PAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVYGEGVAILSGGALLSLAFEHMT 206
Query: 165 SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYE 224
+++ +S R++ + E+ R++G++G+V GQ ++ D ++ L + + +
Sbjct: 207 TAE----ISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHV--- 259
Query: 225 TYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKK 284
K L A GAI+GGGS++EIE +R++ +G++ +V L T+ EEL K
Sbjct: 260 ---HKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGK 316
Query: 285 LAFKLREVNSFN-------DENAEVIFSLVDDNITHVLGFN 318
A K + +++ E + L D H+ GF+
Sbjct: 317 TAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFS 357
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 145/274 (52%), Gaps = 13/274 (4%)
Query: 16 PRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAVVVKEP-VEVYEPMR 74
PR N +L+ RP+ T A S K SY + + + L +AV ++EP +++ E MR
Sbjct: 27 PRYNDVTSALT-RPL--TSAASYDFKFMSYMVNKAKSVNKALEEAVPLREPELKIREAMR 83
Query: 75 HFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPK 134
+ + + + P LC+AACELVGG A+ AA A+ ++HA+S I ++LP D SL +
Sbjct: 84 YTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILDDLPCMDNDSL-RR 142
Query: 135 SKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVV 194
KPT + F + +L + A++ ++ SS A RIL+ + EM +A+ +G+V
Sbjct: 143 GKPTNHIVFGESIAILASQALIALAVQKTTSS-TFADVPPERILKTVQEMVKAV--EGLV 199
Query: 195 EGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIEL 254
GQ +L + + + T +E + K L A GAI+GGGS++EIE
Sbjct: 200 AGQQADLA-----GEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIMGGGSDEEIER 254
Query: 255 LRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFK 288
LR Y +G++ +V L T+ EEL K A K
Sbjct: 255 LRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGK 288
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 13/249 (5%)
Query: 43 KSYWTSVHEDIGAHLRQAVV-VKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHRE 101
K Y E + A L ++V ++EP+ V E +R+ + A + P LC+A CELVGG
Sbjct: 67 KLYMIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEA 126
Query: 102 QAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE 161
A+ AA A+ ++H +S IH++LP D L + KPT + F + +L DA+L E
Sbjct: 127 TAMSAACAVEMIHTSSLIHDDLPCMDNADL-RRGKPTNHKVFGEDMAVLAGDALLALAFE 185
Query: 162 --LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDV 219
+ SS A S R++R +VE+ RA+G++G+V GQ +L + + D L + +
Sbjct: 186 HMTVVSSGLVA---SERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFI 242
Query: 220 EMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEI 279
+ K L A GAI+GGG+E+EIE LR+Y +G++ +V L T+
Sbjct: 243 HL------HKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKST 296
Query: 280 EELKKLAFK 288
EEL K A K
Sbjct: 297 EELGKTAGK 305
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 10/247 (4%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
KSY E + A L +V ++EP+ + E +R+ + A + P LC+AACELVGG
Sbjct: 64 KSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEAT 123
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162
A+ AA A+ ++H +S IH++LP D L + KPT + F + +L DA+L E
Sbjct: 124 AMSAACAVEMIHTSSLIHDDLPCMDDADL-RRGKPTNHKEFGEDMAVLAGDALLALAFEH 182
Query: 163 LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-CDDDDRKLNGITDVEM 221
+ N R++R ++E+ +A+G++G+V GQ +L CSQ + DD L + + +
Sbjct: 183 MTFVSNGLVAPE-RMIRAVMELAKAIGTKGLVAGQVTDL-CSQGLNPDDVGLERLEFIHL 240
Query: 222 TYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281
K L A GAI+GGG+E+EIE LR+Y +G++ +V L TE +E
Sbjct: 241 ------HKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKE 294
Query: 282 LKKLAFK 288
L K A K
Sbjct: 295 LGKTAGK 301
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 17/230 (7%)
Query: 65 EPV-EVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENL 123
EPV EV++ MR+ + + P LC+ ACELVGG A+ AA A+ ++HAAS I ++L
Sbjct: 62 EPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDL 121
Query: 124 PLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGL-ELLASSDNPAGNNSGRILRVMV 182
P D SL + KPT + F T +L ++A+ + + LAS+ G S R+LR +
Sbjct: 122 PCMDDDSL-RRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTS--LGVTSERVLRAVQ 178
Query: 183 EMTRAMGSQGVVEGQYNELQCSQC----DDDDRKLNGITDVEMTYETYKKKEGRLHACGA 238
EM RA+G++G+V GQ +L + +DD+ + + V T + A
Sbjct: 179 EMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAA--------A 230
Query: 239 ACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFK 288
GAI+GGGS++EIE L+ Y VG++ ++ L T+ EEL K A K
Sbjct: 231 VVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGK 280
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 12/248 (4%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
K Y E + A L +V ++EP+ V E +R+ + A + P LC+A CELVGG
Sbjct: 67 KLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEAT 126
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE- 161
A+ AA A+ ++H +S IH++LP D L + KPT + + + +L DA+L E
Sbjct: 127 AMSAACAVEMIHTSSLIHDDLPCMDNADL-RRGKPTNHKVYGEDMAVLAGDALLALAFEH 185
Query: 162 -LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVE 220
+ SS A R++R +VE+ RA+G+ G+V GQ +L + + D L + +
Sbjct: 186 MTVVSSGLVAPE---RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIH 242
Query: 221 MTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280
+ K L A G I+GGG+E+EIE LR+Y +G++ +V L T+ E
Sbjct: 243 L------HKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTE 296
Query: 281 ELKKLAFK 288
EL K A K
Sbjct: 297 ELGKTAGK 304
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 130/248 (52%), Gaps = 12/248 (4%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
K Y E + A L +V + +P+ + E +R+ + A + P LC+AACELVGG
Sbjct: 67 KLYMIRKAESVNAALDVSVPLLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEAT 126
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE- 161
A+ AA A+ ++H +S IH++LP D L + KPT + + + +L DA+L E
Sbjct: 127 AMSAACAVEMIHTSSLIHDDLPCMDNADL-RRGKPTNHKVYGEDMAVLAGDALLALAFEH 185
Query: 162 -LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVE 220
+ SS A +++R +VE+ RA+G+ G+V GQ +L + + D L + +
Sbjct: 186 MTVVSSGLVAPE---KMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIH 242
Query: 221 MTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280
+ K L A G I+GGG+E+EIE LR+Y +G++ +V L T+ E
Sbjct: 243 L------HKTAALLEAAAVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTE 296
Query: 281 ELKKLAFK 288
EL K A K
Sbjct: 297 ELGKTAGK 304
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 20/252 (7%)
Query: 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQ 102
KSY E + L +V ++P+ + E +R+ + A + P LC+AACELVGG
Sbjct: 67 KSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEAT 126
Query: 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE- 161
A+ AA A+ ++H +S IH++LP D L + KPT + F + +L DA+L E
Sbjct: 127 AMSAACAVEMIHTSSLIHDDLPCMDDADL-RRGKPTNHKVFGEHMAVLAGDALLALAFEH 185
Query: 162 -LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVE 220
+ SS A R++R + E+ +A+G++G+V GQ ++L CSQ G+ +
Sbjct: 186 MTVVSSGLVAPE---RMIRSVTELAKAIGTKGLVAGQVSDL-CSQ---------GLNPYD 232
Query: 221 MTYETYK----KKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPT 276
+ E + K L A GAI+GGG+E+EI+ LR+YG +G++ +V + T
Sbjct: 233 VGLERLEFIHLHKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVT 292
Query: 277 EEIEELKKLAFK 288
E EEL K A K
Sbjct: 293 ESTEELGKTAGK 304
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%)
Query: 44 SYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQA 103
+Y E + L +++ P +Y+ +R+ + A + P LC+A+CEL GG E A
Sbjct: 12 TYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMA 71
Query: 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163
+ A AL ++H S IH++LP D S + KPT + + + +L DA+L + E +
Sbjct: 72 LPTACALEMIHTMSLIHDDLPAMDNDSY-RRGKPTNHIIYGEDLAILAGDALLAYAFEFI 130
Query: 164 ASSDN--PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEM 221
A+ PA I++V+ ++ ++ + G+V GQ +L D T +E
Sbjct: 131 ATQTKNVPA----DLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSD--------TTLET 178
Query: 222 TYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281
+ K G L GA+L G EK++ RY +G+ I+ L E+
Sbjct: 179 LNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEK 238
Query: 282 LKK 284
L K
Sbjct: 239 LGK 241
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 26/274 (9%)
Query: 48 SVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAA 107
+ E I L + + + P E+ E M+++ + P VA +GG+ + AI
Sbjct: 6 TWKEKIEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVG 65
Query: 108 AALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167
+ + ++H S IH++LP D + + PT + F LL DA+L + E+L+ +
Sbjct: 66 SGIELIHNYSLIHDDLPCMD-NDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRE 124
Query: 168 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYK 227
N + IL + + + GS G+V GQ +++ G D+ YE
Sbjct: 125 NYKTLSCEEILEINKIIAQKAGSNGMVGGQVLDIK------------GYEDL---YEVSV 169
Query: 228 KKEGRLHACGAACGAILGGGSE--KEIELL-RRYGFYVGMIQGIVSR-----RLGPTEEI 279
KK G L CGA++ E KE+E + R+ G M+ + + +LG +
Sbjct: 170 KKTGALFEACFMCGAVVAKRREKLKEMESIGRKVGLLFQMVDDYLDKDGFYEKLGECLK- 228
Query: 280 EELKKLAFKLREVNSFND-ENAEVIFSLVDDNIT 312
EE+KKL +L+E F + + + L+ IT
Sbjct: 229 EEIKKLYEELKEKEIFKESQELRYLLDLIYKRIT 262
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 68 EVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSD 127
++YE H + + P + + +L GG RE+A A AA+ V+H + +H+++ D
Sbjct: 29 KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDIMDQD 88
Query: 128 RTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRA 187
I + PT++ + +L D + +LL + G S I++ TR+
Sbjct: 89 N---IRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQA--LRGLPSETIIKAFDIFTRS 143
Query: 188 MGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTY-ETYKKKEGRLHACGAACGAILGG 246
+ + EGQ +++ +DR I E Y + +K L + ++ GA++ G
Sbjct: 144 III--ISEGQAVDMEF-----EDR----IDIKEQEYLDMISRKTAALFSASSSIGALIAG 192
Query: 247 GSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFK-LRE 291
++ ++ L+ +G +G+ IV LG T + +EL K F +RE
Sbjct: 193 ANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIRE 238
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 66 PVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPL 125
P ++ + M + + A + P L ++ +G + A A+ ++H S IH++LP
Sbjct: 31 PAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPS 90
Query: 126 SDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMT 185
D L + KPT + F +L D +L + +L+ D+ S R LR++ +
Sbjct: 91 MDNDDL-RRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDERIPPSVR-LRLIERLA 148
Query: 186 RAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILG 245
+A G +G+V GQ +++ +T E+ Y ++ K G++ GA++G
Sbjct: 149 KAAGPEGMVAGQAADMEGEG--------KTLTLSELEY-IHRHKTGKMLQYSVHAGALIG 199
Query: 246 GGSEKEIELLRRYGFYVGM 264
G ++ L + ++G+
Sbjct: 200 GADARQTRELDEFAAHLGL 218
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 81 PVN------MAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPK 134
PVN + PAL A E G AI A ++ ++H S +H++L D +
Sbjct: 66 PVNNNCGKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDLMDRDEHR---R 122
Query: 135 SKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVV 194
+PT++ + LL DAML E+L D+P + G LR + E TR + +
Sbjct: 123 HRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSP---HVGAALRAISEATREL-----I 174
Query: 195 EGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGR---LHACGAACGAILGGGSEKE 251
GQ D TDV + E K EG+ L A A GA+L G
Sbjct: 175 RGQAA----------DTAFESRTDVALD-ECLKMAEGKTAALMAASAEVGALLAGAPRSV 223
Query: 252 IELLRRYGFYVGMIQGIVSRRLG 274
E L YG ++G+ +V LG
Sbjct: 224 REALVAYGRHIGLAFQLVDDLLG 246
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 81 PVN------MAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPK 134
PVN + PAL A E G AI A ++ ++H S +H++L D +
Sbjct: 66 PVNNNCGKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDLMDRDEHR---R 122
Query: 135 SKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVV 194
+PT++ + LL DAML E+L D+P + G LR + E TR + +
Sbjct: 123 HRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSP---HVGAALRAISEATREL-----I 174
Query: 195 EGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGR---LHACGAACGAILGGGSEKE 251
GQ D TDV + E K EG+ L A A GA+L G
Sbjct: 175 RGQAA----------DTAFESRTDVALD-ECLKMAEGKTAALMAASAEVGALLAGAPRSV 223
Query: 252 IELLRRYGFYVGMIQGIVSRRLG 274
E L YG ++G+ +V LG
Sbjct: 224 REALVAYGRHIGLAFQLVDDLLG 246
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 66 PVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPL 125
P + + M + + A + P + +A G + I A+ ++H S IH++LP
Sbjct: 30 PDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPC 89
Query: 126 SDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLAS--SDNPAGNNSGRILRVMVE 183
D L + KPT + F T +L D +L +L+ S SD + LR++ E
Sbjct: 90 MDDDDL-RRGKPTNHKVFGEATAVLAGDGLLTESFKLITSHVSDEVSAEKR---LRLVNE 145
Query: 184 MTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAI 243
+ A G++G+V GQ +++ ++R++ +E +++K +L GAI
Sbjct: 146 LISAAGTEGMVGGQVADMEA-----ENRQVT----LEELESIHERKTAKLLGFCVIAGAI 196
Query: 244 LGGGSEKEIELLRRYGFYVGM 264
L E++IE LR + ++G+
Sbjct: 197 LADAPEEDIETLRTFSSHIGI 217
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 23/234 (9%)
Query: 31 MVTMAMSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCV 90
M+ M + KN+S H D A + + + V P E+Y+ R+ V A + PA+ +
Sbjct: 1 MMLMTLVDEIKNRSS----HVD--AAIDELLPVTRPEELYKASRYLVDAGGKRLRPAVLI 54
Query: 91 AACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELL 150
A E VG + + AA A+ ++H + IH++ I + P ++ + +L
Sbjct: 55 LAAEAVGSNLRSVLPAAVAVELVHNFTLIHDD---IMDRDDIRRGMPAVHVKWGEAGAIL 111
Query: 151 VADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 210
D + E+L+ + N R+L+ M +++ + EGQ+ ++ D +
Sbjct: 112 AGDTLYSKAFEILSKVE----NEPVRVLKCMDVLSKTCTE--ICEGQWLDM-----DFET 160
Query: 211 RKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGM 264
RK +T+ E E +KK L+A A GA+LGG S++ E L YG +G+
Sbjct: 161 RK--KVTESEY-LEMVEKKTSVLYAAAAKIGALLGGASDEVAEALSEYGRLIGI 211
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 66 PVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPL 125
P + + H + A + P+L + +CE VGG+ E A AAA+ ++H S IH+++
Sbjct: 28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDIMD 87
Query: 126 SDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMT 185
D + + +P+++ + +L D + E A N L V+V+
Sbjct: 88 DDE---MRRGEPSVHVIWGEPMAILAGDVLFSKAFE--AVIRNGDSERVKDALAVVVD-- 140
Query: 186 RAMGSQGVVEGQYNELQCSQCDDDDRKLNGITD--VEMTYETYKKKEGRLHACGAACGAI 243
+ EGQ ++ + +L+ D +EM Y+ A GAI
Sbjct: 141 ---SCVKICEGQALDMGFEE------RLDVTEDEYMEMIYKKTAAL----IAAATKAGAI 187
Query: 244 LGGGSEKEIELLRRYGFYVGM 264
+GG SE+E+E L YG ++G+
Sbjct: 188 MGGASEREVEALEDYGKFIGL 208
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 17/215 (7%)
Query: 71 EPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTS 130
E H A + P + V++ +L+GG RE+A AAAA+ ++H + +H+++ +D
Sbjct: 34 EASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDIMDNDG-- 91
Query: 131 LIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASS-DNPAGNNSGRILRVMVEMTRAMG 189
+ + PT++ + +L D + E L + GN + + +
Sbjct: 92 -LRRGLPTVHVKWGEPMAILAGDYLHAKAFEALNEALKGLDGNTFYKAFSIFI-----TS 145
Query: 190 SQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSE 249
+ + EGQ ++ D +T+ E + K K L +C AA G I+ ++
Sbjct: 146 IEIISEGQAMDMSFENRLD-------VTEEEYI-QMIKGKTAMLFSCSAALGGIINKAND 197
Query: 250 KEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKK 284
++ L YG +G+ IV LG + +EL K
Sbjct: 198 DVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGK 232
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 71 EPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTS 130
+ M++ VF+ + +L + ++ + V + A+ +H+ S IH++LP D +
Sbjct: 34 KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDN 93
Query: 131 LIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 190
+ K + + + +T LL DA+ +L++S P +N RI +++ E++ ++GS
Sbjct: 94 F-RRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPNVSNLKRI-KMISELSYSIGS 151
Query: 191 QGVVEGQYNELQCSQCD 207
G+ GQ +L+ + D
Sbjct: 152 SGMCMGQNLDLEAEKKD 168
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 38/263 (14%)
Query: 36 MSTPNKNKSYWTS----------VHEDIGA---HLRQAVVVKEPVEVYEPMRHFVFAAPV 82
+S N+N W + +++DI L Q V P+ + E H + A
Sbjct: 15 ISDGNENTDVWVNDMKFKMAYSFLNDDIDVIERELEQTVRSDYPL-LSEAGLHLLQAGGK 73
Query: 83 NMAPALCVAACELVGGHREQAI-VAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYH 141
+ P + + + G + I A L ++H AS +H+++ + D + + + KPT+
Sbjct: 74 RIRPVFVLLSG-MFGDYDINKIKYVAVTLEMIHMASLVHDDV-IDD--AELRRGKPTIKA 129
Query: 142 AFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
+ + D ML LE++ + P + RIL SQ +VE E+
Sbjct: 130 KWDNRIAMYTGDYMLAGSLEMMTRINEPKAH---RIL-----------SQTIVEVCLGEI 175
Query: 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
+ Q D K N ++ K+K L A GAI G EK + L +G+Y
Sbjct: 176 E--QIKD---KYNMEQNLRTYLRRIKRKTALLIAVSCQLGAIASGADEKIHKALYWFGYY 230
Query: 262 VGMIQGIVSRRLGPTEEIEELKK 284
VGM I+ L T EEL K
Sbjct: 231 VGMSYQIIDDILDFTSTEEELGK 253
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 68 EVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSD 127
++Y +H +FA + P L V L E+ + AAAA+ ++H + IH+++ +D
Sbjct: 34 KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDIMDND 93
Query: 128 RTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLAS-SDNPAGNNSGRIL-RVMVEMT 185
+ KPT++ + +L D + E ++ DN + +IL + VE
Sbjct: 94 DER---RGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDNKKAHEVLKILSKACVE-- 148
Query: 186 RAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILG 245
V EGQ +++ N +E + +KK G L GA++
Sbjct: 149 -------VCEGQAMDMEFE---------NYYPTMEEYLDMIRKKTGALLEASVGIGAVMA 192
Query: 246 GGSEKEIELLRRYGFYVGM---IQGIVSRRLGPTEEI 279
+E+E E L+ Y +G+ IQ V +G +++
Sbjct: 193 DCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKL 229
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 107 AAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASS 166
A A+ ++HAAS I +++P D L + +PT++ + + +L A A+L ++A +
Sbjct: 80 ACAVEMVHAASLILDDMPCMDDAKL-RRGRPTIHSHYGEHVAILAAVALLSKAFGVIADA 138
Query: 167 D--NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
D P N R + E++ A+G QG+V+GQ+ +L
Sbjct: 139 DGLTPLAKN-----RAVSELSNAIGMQGLVQGQFKDL 170
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 108 AALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167
AA+ +MHA + +H++LP D ++ + PT++ F T +LV DA+ LAS D
Sbjct: 101 AAIEMMHACTLVHDDLPAMD-DDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLD 159
Query: 168 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
P G+N ++R E+ +A+ ++G GQ +L
Sbjct: 160 AP-GDNRIALVR---ELAQAVSAEGAAGGQAMDL 189
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 12/215 (5%)
Query: 69 VYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR 128
++ M++ + + L A E + V +AA+ ++H+ S IH++LP D
Sbjct: 32 LFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCID- 90
Query: 129 TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 188
+ K + + + N LL DA+ +L++S+ P ++S R L+++ E + A+
Sbjct: 91 NDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIR-LKMIAEFSNAI 149
Query: 189 GSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGS 248
G G+ GQ +L+ +RK I+++E Y K L C
Sbjct: 150 GYSGMCIGQMLDLE------KERKKINISELEKI-NLY--KTAFLIRCSIRLAYFASNNF 200
Query: 249 EKEI-ELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282
KE+ +L ++ +G+ I L +I++L
Sbjct: 201 SKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKL 235
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 106 AAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLAS 165
AA AL +MH AS +H++LP D I + KP+++ A+ +L D++L G E+LA
Sbjct: 65 AAVALELMHCASLVHDDLPAFDNAD-IRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLA- 122
Query: 166 SDNPAGNNSGRILRVMVEMTRAMGSQ-GVVEGQYNE 200
+ N R L+++ ++ + G++ G+ GQ E
Sbjct: 123 --DVGAVNPDRALKLISKLGQLSGARGGICAGQAWE 156
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 30/203 (14%)
Query: 86 PALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP 145
P + V A VG + AA + +H A+ +H+++ S + + K T AF
Sbjct: 49 PMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVV---DESDMRRGKATANAAFGN 105
Query: 146 NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ 205
+LV D + +++ S S ++L VM E + V+
Sbjct: 106 AASVLVGDFIYTRAFQMMTSL------GSLKVLEVMSEAVNVIAEGEVL----------- 148
Query: 206 CDDDDRKLNGITDVEMTYETYKK----KEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
+L + D ++T E Y + K RL A C IL G + +E + L+ YG Y
Sbjct: 149 ------QLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRY 202
Query: 262 VGMIQGIVSRRLGPTEEIEELKK 284
+G ++ L + E+L K
Sbjct: 203 LGTAFQLIDDLLDYNADGEQLGK 225
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 30/203 (14%)
Query: 86 PALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP 145
P + V A VG + AA + +H A+ +H+++ S + + K T AF
Sbjct: 49 PMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVV---DESDMRRGKATANAAFGN 105
Query: 146 NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ 205
+LV D + +++ S S ++L VM E + V+
Sbjct: 106 AASVLVGDFIYTRAFQMMTSL------GSLKVLEVMSEAVNVIAEGEVL----------- 148
Query: 206 CDDDDRKLNGITDVEMTYETYKK----KEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
+L + D ++T E Y + K RL A C IL G + +E + L+ YG Y
Sbjct: 149 ------QLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRY 202
Query: 262 VGMIQGIVSRRLGPTEEIEELKK 284
+G ++ L + E+L K
Sbjct: 203 LGTAFQLIDDLLDYNADGEQLGK 225
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 106 AAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLAS 165
AA AL ++H AS +H++LP D I + KPT++ A+ +L D+++ G E+LA
Sbjct: 65 AAVALELIHCASLVHDDLPCFDDAE-IRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLAR 123
Query: 166 SDNPAGNNSGRILRVMVEMTRAMG-SQGVVEGQYNE 200
+ A + R L+++ + G G+ GQ E
Sbjct: 124 A---AADQPQRALQLVTALAVRTGMPMGICAGQGWE 156
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 69 VYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR 128
++E + + + A + P L + + +GG+ + AL ++H S IH++LP D
Sbjct: 31 LHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDN 90
Query: 129 TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 188
+ K T + F T +L DA+L + + ++ N+ L ++ ++ A
Sbjct: 91 DD-YRRGKLTNHKRFDEATAILAGDALLTDAFQCILNTQ----LNAEIKLSLINLLSTAS 145
Query: 189 GSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGS 248
GS G+V GQ ++Q + K + ++E + K G L I+ +
Sbjct: 146 GSNGMVYGQMLDMQG------EHKTLTLNELE---RIHIHKTGELIRAAIVSAGIIMNFN 196
Query: 249 EKEIELLRRYGFYVGMI 265
+ +IE L G VG++
Sbjct: 197 DAQIEQLNIIGKNVGLM 213
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 53 IGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHV 112
+ A +++++ + E + + + H + + P + + E+ G +++ AA A+ +
Sbjct: 22 VEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEM 81
Query: 113 MHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGN 172
MH+AS IH++L L+ ++ P+ F P+ LL D ++ + ++ P G
Sbjct: 82 MHSASLIHDDLL---DQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFIS----PYGE 134
Query: 173 NSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGR 232
+V+ + +A + EG+ +L + +D+ N ++ KK
Sbjct: 135 ------KVIQDFGKA--GMDMAEGEVLDL---KLEDESFGENDY------FKCIYKKTAS 177
Query: 233 LHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280
L A A+ GA GG E+ E +G +G IV L E +E
Sbjct: 178 LFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE 225
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 108 AALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167
AA+ +MHA + +H++LP D ++ + PT++ F T +LV DA+ LAS +
Sbjct: 101 AAIEMMHACTLVHDDLPAMD-DDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLN 159
Query: 168 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
P G++ ++R E+ +A+ ++G GQ +L
Sbjct: 160 AP-GDSPIALVR---ELAQAVSAEGAAGGQAIDL 189
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 69 VYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR 128
+ E M++ + + P L A +++G ++ AAAA+ +HA S IH++LP D
Sbjct: 33 LLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDD 92
Query: 129 TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 188
+L + PT + F T +L DA+ F E+L + N + +++++ +
Sbjct: 93 DNL-RRGHPTCHIQFDEATAILAGDALQSFAFEILTKTPNISTEQKLALIQILAQ---GA 148
Query: 189 GSQGVVEGQYNEL 201
G QG+ GQ +L
Sbjct: 149 GVQGMCLGQSLDL 161
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 30/203 (14%)
Query: 86 PALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP 145
P + V A +G +I A + +H AS +H+++ S + + + T F
Sbjct: 55 PLIAVLAARSLGFEGSNSITCATFVEFIHTASLLHDDVV---DESDMRRGRATANAEFGN 111
Query: 146 NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ 205
+LV D + +L+A + S +IL +M + T + EG+ +L
Sbjct: 112 AASVLVGDFIYTRAFQLVAQLE------SLKILSIMADATNVLA-----EGEVQQLM--- 157
Query: 206 CDDDDRKLNGITDVEMTYETYKK----KEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
+ D E + Y + K RL AI+ GG+E + + L+ YG Y
Sbjct: 158 ---------NVNDPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRY 208
Query: 262 VGMIQGIVSRRLGPTEEIEELKK 284
+G +V L + + L K
Sbjct: 209 LGTAFQLVDDVLDYSANTQALGK 231
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 18/208 (8%)
Query: 57 LRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAA 116
+R+++ P + H + A + P+L + + E VGG A AAA+ ++H
Sbjct: 19 IRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTF 78
Query: 117 SFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGR 176
S IH+++ D I + +P ++ + +L D + E A N
Sbjct: 79 SLIHDDIMDDDE---IRRGEPAVHVLWGEPMAILAGDVLFSKAFE--AVIRNGDSEMVKE 133
Query: 177 ILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHAC 236
L V+V+ + EGQ ++ + D +T+ E YKK L A
Sbjct: 134 ALAVVVD-----SCVKICEGQALDMGFEERLD-------VTEEEYMEMIYKKTA-ALIAA 180
Query: 237 GAACGAILGGGSEKEIELLRRYGFYVGM 264
GAI+GGGS +EI L YG +G+
Sbjct: 181 ATKAGAIMGGGSPQEIAALEDYGRCIGL 208
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 107 AAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASS 166
A A+ + H AS + +++P D L + +PT + F + +L + +L L+A++
Sbjct: 79 ACAVELTHTASLMLDDMPCMDNAEL-RRGQPTTHKKFGESVAILASVGLLSKAFGLIAAT 137
Query: 167 DNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD 207
+ G R + + E++ A+G QG+V GQ+ +L + D
Sbjct: 138 GDLPGE---RRAQAVNELSTAVGVQGLVLGQFRDLNDAALD 175
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 26/247 (10%)
Query: 41 KNKSYWTSVHEDIGA---HLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVG 97
K K+ ++ + +D+ A L +AV E + E H + A + P + A
Sbjct: 2 KLKAMYSFLSDDLAAVEEELERAVQ-SEYGPLGEAALHLLQAGGKRIRPVFVLLAARFGQ 60
Query: 98 GHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLP 157
E+ A AL ++H AS +H+++ + D + + + +PT+ + + D +
Sbjct: 61 YDLERMKHVAVALELIHMASLVHDDV-IDD--ADLRRGRPTIKAKWSNRFAMYTGDYLFA 117
Query: 158 FGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGIT 217
LE +A NP + + + +VE+ R G +E ++ + Q
Sbjct: 118 RSLERMAELGNPRAHQV--LAKTIVEVCR-----GEIEQIKDKYRFDQP----------- 159
Query: 218 DVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277
+ ++K L A GA+ G E ++ L +G YVGM I L T
Sbjct: 160 -LRTYLRRIRRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTG 218
Query: 278 EIEELKK 284
E+L K
Sbjct: 219 TEEQLGK 225
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 69 VYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR 128
V E M++ + P L A + G AAA+ +HA S IH++LP D
Sbjct: 32 VVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD 91
Query: 129 TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 188
L + PT + F +L DA+ +L+ +D P ++ RI ++ E+ A
Sbjct: 92 DDL-RRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRI-SMISELASAS 149
Query: 189 GSQGVVEGQYNEL 201
G G+ GQ +L
Sbjct: 150 GIAGMCGGQALDL 162
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 36/263 (13%)
Query: 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACE- 94
M++ + +S E + + + + V++P +Y R+ + A + P + + A E
Sbjct: 1 MTSADHVESAIAERREIVNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAES 60
Query: 95 ------LVGGHRE---------QAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTM 139
L +R+ + AA ++ V+ + + IH+++ + + P +
Sbjct: 61 LADVEPLSADYRQFPSLPGDEVDVLSAAVSIEVIQSFTLIHDDIM---DDDDLRRGVPAV 117
Query: 140 YHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199
+ + T +L D + E + + PA R + + E+ A + EGQ
Sbjct: 118 HREYDLETAILAGDTLYSKAFEYMLDTGAPAE----RSVEALDEL--ATTCTEICEGQ-- 169
Query: 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYG 259
D D + +T E E + K L+A A+ AIL G ++ +E L YG
Sbjct: 170 -----ALDVDFENRSDVT-TEEYLEMVEFKTAVLYAAAASIPAILLGSDDETVEALHGYG 223
Query: 260 FYVG---MIQGIVSRRLGPTEEI 279
+G IQ + P++E+
Sbjct: 224 LDIGRAFQIQDDLLDLTAPSDEL 246
>sp|P07874|ALGA_PSEAE Alginate biosynthesis protein AlgA OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=algA PE=1 SV=3
Length = 481
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 62 VVKEPVEVYEPMRHFVFAAPV--NMAPALCVAACELVGGHREQAIVAAAALHVMHAASFI 119
+V+E +E + P N APA+ +AA +LV R++ ++ A HV+
Sbjct: 62 IVQEQLEAQNLASQAILLEPFGRNTAPAVAIAAMKLVAEGRDELLLILPADHVIEDQRAF 121
Query: 120 HENLPLSDRTSL--------IPKSKPTMYHAFKPNTELLVADAMLPFGLELLAS 165
+ L L+ + IP S+P + + + ADA LP G+ + S
Sbjct: 122 QQALALATNAAEKGEMVLFGIPASRPETGYGYIRAS----ADAQLPEGVSRVQS 171
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 32/182 (17%)
Query: 107 AAALHVMHAASFIHENL--PLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLA 164
A + ++H AS +H+++ S R +I ++ H++ +L D +L +L+
Sbjct: 209 AEIVEMIHTASLVHDDVIDEASTRRDVI-----SINHSYTNKLAILCGDYLLARASVVLS 263
Query: 165 SSDNPAGNNSGRILRVMVEMTRAMGSQ--GVVEGQYNELQCSQCDDDDRKLNGITDVEMT 222
+ NP ++T M + +VEG++ + K NG+ +
Sbjct: 264 TIRNP-------------DVTECMSTALAELVEGEFMQ----------AKSNGVVSFDNY 300
Query: 223 YETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282
+ K G L AIL G I + +G +G+ IV L T EE
Sbjct: 301 LQKTYLKTGSLITNSCRSAAILSGADSNIINISTEFGKNLGLAFQIVDDLLDYTGSAEEC 360
Query: 283 KK 284
K
Sbjct: 361 GK 362
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 29/228 (12%)
Query: 82 VNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYH 141
V+ A A EL H+ A + + ++H AS IH+++ + D S + + K T++
Sbjct: 102 VSRATAELAGLLELTTEHQRLAEI----IEMIHTASLIHDDV-IDD--SGMRRGKETIHQ 154
Query: 142 AFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
+ +L D M LA+ +N +++++ ++ + S G ++
Sbjct: 155 LYGTRVAVLAGDFMFAQSSWFLANLENI------EVIKLISQVIKDFAS-GEIKQASTLF 207
Query: 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
C DD ++Y K L A AI G S E + YG
Sbjct: 208 DCDITLDD-----------YLLKSYYKT-ASLIAASTRSAAIFSGVSTAICEQMYEYGRN 255
Query: 262 VGMIQGIVSRRLGPTEEIEELKKLAFKLREVNSFNDENAEVIFSLVDD 309
+G+ +V L T+ E+L K A + A VIF+L D+
Sbjct: 256 LGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNL---TAPVIFALQDE 300
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 31/229 (13%)
Query: 82 VNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYH 141
V+ A A EL H+ A + + ++H AS IH+++ + D S + + K T++
Sbjct: 133 VSRATAELAGLLELTTEHQRLAEI----IEMIHTASLIHDDV-IDD--SGMRRGKETIHQ 185
Query: 142 AFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201
+ +L D M LA+ +N +++++ ++ + S G ++
Sbjct: 186 LYGTRVAVLAGDFMFAQSSWFLANLENI------EVIKLISQVIKDFAS-GEIKQASTLF 238
Query: 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFY 261
C DD ++Y K L A AI G S E + YG
Sbjct: 239 DCDVTLDD-----------YLLKSYYKT-ASLLASSTRSAAIFSGVSTTICEQMYEYGRN 286
Query: 262 VGMIQGIVSRRLGPTEEIEELKKLA-FKLREVNSFNDENAEVIFSLVDD 309
+G+ +V L T+ E+L K A L + N A VIF+L D+
Sbjct: 287 LGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNL----TAPVIFALQDE 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,169,027
Number of Sequences: 539616
Number of extensions: 5065779
Number of successful extensions: 12622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 12525
Number of HSP's gapped (non-prelim): 55
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)