Query 020845
Match_columns 320
No_of_seqs 196 out of 1623
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 2.4E-56 5.1E-61 422.4 26.6 239 42-291 3-245 (299)
2 COG0142 IspA Geranylgeranyl py 100.0 3.7E-53 8E-58 404.6 27.0 238 42-300 3-255 (322)
3 PRK10888 octaprenyl diphosphat 100.0 4.7E-52 1E-56 397.1 28.5 245 42-309 6-261 (323)
4 TIGR02748 GerC3_HepT heptapren 100.0 1.2E-51 2.7E-56 393.8 27.1 227 42-291 5-232 (319)
5 TIGR02749 prenyl_cyano solanes 100.0 7.8E-51 1.7E-55 388.6 26.9 228 41-291 5-236 (322)
6 CHL00151 preA prenyl transfera 100.0 1E-50 2.3E-55 388.0 27.3 231 38-291 3-237 (323)
7 PLN02857 octaprenyl-diphosphat 100.0 3.7E-50 8E-55 393.7 27.0 227 42-291 97-330 (416)
8 PLN02890 geranyl diphosphate s 100.0 3.7E-50 7.9E-55 393.7 26.5 219 50-291 92-330 (422)
9 KOG0776 Geranylgeranyl pyropho 100.0 4.7E-49 1E-53 375.8 23.2 260 38-313 63-330 (384)
10 PF00348 polyprenyl_synt: Poly 100.0 4.1E-49 8.8E-54 366.3 17.6 224 70-309 2-236 (260)
11 cd00685 Trans_IPPS_HT Trans-Is 100.0 2.6E-47 5.7E-52 353.9 22.4 206 67-291 4-211 (259)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 2.9E-35 6.2E-40 268.0 22.0 186 84-291 1-187 (236)
13 KOG0711 Polyprenyl synthetase 100.0 1.9E-32 4.1E-37 254.0 16.5 252 41-308 11-283 (347)
14 KOG0777 Geranylgeranyl pyropho 100.0 6.3E-31 1.4E-35 234.4 14.9 200 67-291 21-221 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.8 3E-17 6.4E-22 145.7 20.6 156 104-281 13-171 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.4 0.006 1.3E-07 55.3 13.9 110 99-237 31-140 (212)
17 cd00683 Trans_IPPS_HH Trans-Is 90.9 3.9 8.5E-05 37.9 11.8 73 191-279 96-168 (265)
18 PLN02632 phytoene synthase 90.2 4.8 0.0001 39.0 12.1 76 191-279 143-220 (334)
19 TIGR03465 HpnD squalene syntha 89.4 14 0.0003 34.3 14.2 72 191-279 88-159 (266)
20 TIGR01559 squal_synth farnesyl 87.7 2.8 6.1E-05 40.7 8.5 88 177-278 102-189 (336)
21 TIGR03464 HpnC squalene syntha 86.6 26 0.00057 32.5 14.2 71 191-278 89-159 (266)
22 PF00494 SQS_PSY: Squalene/phy 73.5 8.4 0.00018 35.4 6.0 73 191-278 94-166 (267)
23 PF06783 UPF0239: Uncharacteri 71.3 5.3 0.00012 31.0 3.3 21 249-269 15-35 (85)
24 COG1562 ERG9 Phytoene/squalene 70.9 77 0.0017 30.1 11.9 73 191-279 106-178 (288)
25 PF03095 PTPA: Phosphotyrosyl 47.7 1.6E+02 0.0034 28.3 9.5 172 38-249 79-261 (299)
26 PRK10581 geranyltranstransfera 40.7 2.7E+02 0.0058 26.4 10.0 64 102-167 204-278 (299)
27 PRK13105 ubiA prenyltransferas 39.8 1.1E+02 0.0023 29.1 7.0 61 102-164 161-221 (282)
28 TIGR01568 A_thal_3678 uncharac 37.1 1.2E+02 0.0025 22.5 5.4 54 37-95 6-60 (66)
29 cd04087 PTPA Phosphotyrosyl ph 36.5 2.3E+02 0.0049 26.8 8.5 102 39-146 56-167 (266)
30 PRK07566 bacteriochlorophyll/c 32.4 1.3E+02 0.0027 28.8 6.4 56 103-160 191-246 (314)
31 PRK12875 ubiA prenyltransferas 32.2 1.3E+02 0.0029 28.3 6.4 48 110-159 174-221 (282)
32 PF11588 DUF3243: Protein of u 31.9 92 0.002 24.0 4.2 43 264-309 34-77 (81)
33 PRK06080 1,4-dihydroxy-2-napht 31.5 2.3E+02 0.0049 26.5 7.9 59 101-161 168-226 (293)
34 TIGR03042 PS_II_psbQ_bact phot 30.8 70 0.0015 27.3 3.8 67 246-313 29-107 (142)
35 TIGR01476 chlor_syn_BchG bacte 29.0 2.8E+02 0.006 25.8 8.0 52 104-157 164-215 (283)
36 PF14290 DUF4370: Domain of un 26.9 55 0.0012 29.6 2.6 57 253-316 134-202 (239)
37 PRK12884 ubiA prenyltransferas 25.5 2.8E+02 0.0061 25.6 7.4 76 86-163 140-215 (279)
38 TIGR02056 ChlG chlorophyll syn 22.7 3.5E+02 0.0076 25.6 7.5 54 103-158 185-238 (306)
39 KOG1459 Squalene synthetase [L 22.1 7.3E+02 0.016 24.7 9.3 139 148-314 113-262 (413)
40 KOG2867 Phosphotyrosyl phospha 20.6 4.1E+02 0.009 26.2 7.4 85 39-123 93-186 (367)
41 PF04844 Ovate: Transcriptiona 20.1 2.1E+02 0.0047 20.6 4.1 51 40-95 3-53 (59)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.4e-56 Score=422.44 Aligned_cols=239 Identities=20% Similarity=0.275 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHH
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFI 119 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLI 119 (320)
|.++++...+.|++.|++.+... .+..+.++++|++..||||+||+||+++++++|++++.+.++|++||++|+||||
T Consensus 3 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLi 82 (299)
T PRK10581 3 FPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYSLI 82 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888877542 2345899999999999999999999999999999888899999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHH
Q 020845 120 HENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199 (320)
Q Consensus 120 HDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~l 199 (320)
|||||+||+ |++|||+||+|++||+++|||+||+|++.||+++++...+ ........+++.+++++.|..+++.||.+
T Consensus 83 HDDip~~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l 160 (299)
T PRK10581 83 HDDLPAMDD-DDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMP-EVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_pred HcCcccccC-CCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCc-cCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence 999888999 8899999999999999999999999999999999986532 12344567788888877666789999999
Q ss_pred HhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 020845 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSE-KEIELLRRYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 200 Dl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~-~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 278 (320)
|+.+... ..+++.|++|+.+|||+||++||.+|++++|+++ +.++.+++||.++|+||||+||++|++++
T Consensus 161 d~~~~~~---------~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~ 231 (299)
T PRK10581 161 DLEAEGK---------QVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_pred HHhccCC---------CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 9988652 3688999999999999999999999999999864 57899999999999999999999999999
Q ss_pred HHHh-hhHHHHHHH
Q 020845 279 IEEL-KKLAFKLRE 291 (320)
Q Consensus 279 ~~~~-k~~~~Dl~e 291 (320)
++++ |+.++|++|
T Consensus 232 ~~~~GK~~g~Dl~~ 245 (299)
T PRK10581 232 TATLGKRQGADQQL 245 (299)
T ss_pred hHHHCCCcchhhhc
Confidence 9988 999999987
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-53 Score=404.60 Aligned_cols=238 Identities=28% Similarity=0.379 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChH----HHhhHHHHHHHHHHHH
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHRE----QAIVAAAALHVMHAAS 117 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~----~~~~lAaavEliH~as 117 (320)
+..++.+..+.|++.|.+.++...+..+.+++.|++..||||+||+|++++++++|++.+ .+..+|++||++|++|
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~~~~~~~~~~~~aaavEliH~~S 82 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGIDLETGGNDALDLAAAIELIHTAS 82 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHHH
Confidence 567778888888888888887433456999999999999999999999999999985433 6799999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHH
Q 020845 118 FIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 197 (320)
Q Consensus 118 LIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ 197 (320)
||||| |||+ +++|||+||+|.+||+++||++||+|++.||+++++...+ ...+.+.+.... .+|+.||
T Consensus 83 LiHDD--vmD~-s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~----~~~~~~~~~~~~-----~~~~~GQ 150 (322)
T COG0142 83 LIHDD--LMDD-DDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSE----ALEAIKALAEAI-----NGLCGGQ 150 (322)
T ss_pred HHHhh--cccC-CCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCch----hHHHHHHHHHHH-----HHHHHhH
Confidence 99999 7999 7889999999999999999999999999999999998631 134444544433 5799999
Q ss_pred HHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 198 YNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 198 ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
.+|+.+..+ ..+++.|.+|+++|||+||++++.+|+++++++++..+.+++||.++|+||||+||++|+++
T Consensus 151 ~lDl~~~~~---------~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~ 221 (322)
T COG0142 151 ALDLAFENK---------PVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITG 221 (322)
T ss_pred HHHHHccCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCC
Confidence 999998863 37999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHh-hhHHHHHHH----------hccCCHHHH
Q 020845 278 EIEEL-KKLAFKLRE----------VNSFNDENA 300 (320)
Q Consensus 278 ~~~~~-k~~~~Dl~e----------l~~~~~~~~ 300 (320)
|++++ |++|+|++| ++..+++++
T Consensus 222 d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~ 255 (322)
T COG0142 222 DEEELGKPVGSDLKEGKPTLPVLLALEKANEDQK 255 (322)
T ss_pred ChHHhCCCcchHHHcCCchHHHHHHHHcCchhhH
Confidence 99999 999999988 777777665
No 3
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=4.7e-52 Score=397.05 Aligned_cols=245 Identities=21% Similarity=0.278 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
+..++....+.|++.|.+.+....+ .+.++.+|.+..+|||+||.|++++++++|++.+.++++|++||++|+||||||
T Consensus 6 ~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiHD 84 (323)
T PRK10888 6 INELTAQDMAGVNAAILEQLNSDVQ-LINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHD 84 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccch-hHHHHHHHHHhCCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566667778888877765544 489999999999999999999999999999988889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHh
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl 201 (320)
| |||+ +++|||+||+|++||+++|||+||+|++.+|+++++... .++++++.+.. ..+++||++|+
T Consensus 85 D--I~D~-s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~Gq~~d~ 150 (323)
T PRK10888 85 D--VVDE-SDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGS------LKVLEVMSEAV-----NVIAEGEVLQL 150 (323)
T ss_pred c--cccC-CcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHH-----HHHHHHHHHHH
Confidence 9 8999 889999999999999999999999999999999987642 34555554433 45899999999
Q ss_pred hcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 020845 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 281 (320)
.+... ...+++.|++|+.+|||+||++||.+|++++|++++.++.+++||+++|+||||+||++|++++++.
T Consensus 151 ~~~~~--------~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~ 222 (323)
T PRK10888 151 MNVND--------PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGET 222 (323)
T ss_pred HhccC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHh
Confidence 87542 2368999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h-hhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 282 L-KKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 282 ~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
+ |+.++||+| ++..++++++.|..+++.
T Consensus 223 ~GK~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~ 261 (323)
T PRK10888 223 LGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQ 261 (323)
T ss_pred hCCCchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 8 999999998 666677788777777643
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=1.2e-51 Score=393.79 Aligned_cols=227 Identities=22% Similarity=0.298 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
+..+++...+.|++.|++.+....+ .+.+++.|++..||||+||+||+++++++|++.+.+..+|++||+||+||||||
T Consensus 5 ~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiHD 83 (319)
T TIGR02748 5 IYSFLQKDIDSIEKELEKAVQAEHP-VLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVHD 83 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677778888887765444 589999999999999999999999999998888889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHh
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl 201 (320)
| |+|+ +.+|||+||+|.+||+++|||+||+|++.||+++++... ..+.+.+. +++ .++++||++|+
T Consensus 84 D--I~D~-s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~------~~~~~~~~---~~~--~~~~~Gq~~~~ 149 (319)
T TIGR02748 84 D--VIDD-ADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKD------PRAHQILS---HTI--VEVCRGEIEQI 149 (319)
T ss_pred c--ccCC-CCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHH---HHH--HHHHHHHHHHH
Confidence 9 8999 789999999999999999999999999999999998642 34445544 333 46899999999
Q ss_pred hcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 020845 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 281 (320)
.+..+ ...+++.|.+|+++|||+||++||.+|++++|++++.++.+++||.++|++|||+||++|+++++++
T Consensus 150 ~~~~~--------~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~ 221 (319)
T TIGR02748 150 KDKYN--------FDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEE 221 (319)
T ss_pred HhccC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHh
Confidence 87642 2368899999999999999999999999999999999999999999999999999999999999988
Q ss_pred h-hhHHHHHHH
Q 020845 282 L-KKLAFKLRE 291 (320)
Q Consensus 282 ~-k~~~~Dl~e 291 (320)
+ |+.++||+|
T Consensus 222 ~GK~~~~Dl~~ 232 (319)
T TIGR02748 222 LGKPAGGDLLQ 232 (319)
T ss_pred hCCChhhHHhC
Confidence 8 999999987
No 5
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=7.8e-51 Score=388.59 Aligned_cols=228 Identities=18% Similarity=0.192 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC---hHHHhhHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGH---REQAIVAAAALHVMHAAS 117 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~---~~~~~~lAaavEliH~as 117 (320)
.+..++......|++.+.+.+....| .+.++++|++..||||+||.||+++++++|+. .+..+.+|++||++|+||
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~~~~~~~~~~~A~avEliH~as 83 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHP-ILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQQELTPRHRRLAEITEMIHTAS 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHHHH
Confidence 45566677777888888888876555 48999999999999999999999999998753 367889999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHH
Q 020845 118 FIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 197 (320)
Q Consensus 118 LIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ 197 (320)
||||| |||+ |.+|||+||+|++||+++|||+||+|++.|++.+++... ..+++.+.+.. ..+++||
T Consensus 84 LiHDD--iiD~-s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~Gq 149 (322)
T TIGR02749 84 LVHDD--VIDE-SDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLEN------LEVVKLISKVI-----TDFAEGE 149 (322)
T ss_pred HHHcc--cccC-ccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHH-----HHHHHHH
Confidence 99999 8999 889999999999999999999999999999999987642 35566665544 3589999
Q ss_pred HHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 198 YNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 198 ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
++|+.+... ...+++.|.+|+.+|||+||++||++|++++|++++.++.+++||.++|+||||+||++|+++
T Consensus 150 ~~~~~~~~~--------~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~ 221 (322)
T TIGR02749 150 IKQGLNQFD--------SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTG 221 (322)
T ss_pred HHHHHcccC--------CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999876542 236899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHh-hhHHHHHHH
Q 020845 278 EIEEL-KKLAFKLRE 291 (320)
Q Consensus 278 ~~~~~-k~~~~Dl~e 291 (320)
+++++ |+.++||+|
T Consensus 222 ~~~~~GK~~g~Dl~~ 236 (322)
T TIGR02749 222 STEQLGKPAGSDLMK 236 (322)
T ss_pred ChHhhCCChhHHHhC
Confidence 99888 999999997
No 6
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1e-50 Score=387.99 Aligned_cols=231 Identities=19% Similarity=0.258 Sum_probs=203.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh---HHHhhHHHHHHHHH
Q 020845 38 TPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR---EQAIVAAAALHVMH 114 (320)
Q Consensus 38 ~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~---~~~~~lAaavEliH 114 (320)
+.+.+..+++.....|++.|++.+....| .+.++++|++..||||+||.||+++++++|++. ..+..+|+++|++|
T Consensus 3 ~~~~~~~~~~~~l~~i~~~l~~~~~~~~~-~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~~~~~~~~~~~~A~aiEllH 81 (323)
T CHL00151 3 TNSNLLTPIEEELLILEDNLKKLIGSGHP-ILYAAAKHLFSAGGKRIRPAIVLLVAKATGGNMEIKTSQQRLAEITEIIH 81 (323)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHH
Confidence 34567788888889999999998876555 589999999999999999999999999998753 45678999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhh
Q 020845 115 AASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVV 194 (320)
Q Consensus 115 ~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~ 194 (320)
+||||||| |||+ |.+|||+||+|++||+++|||+||+|++.||+.+++... ..+.+.+.++. ..++
T Consensus 82 ~asLiHDD--i~D~-s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~------~~~~~~~~~~~-----~~l~ 147 (323)
T CHL00151 82 TASLVHDD--VIDE-CSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNN------LEVVKLISKVI-----TDFA 147 (323)
T ss_pred HHHHHHcc--cccC-ccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCC------hHHHHHHHHHH-----HHHH
Confidence 99999999 8999 789999999999999999999999999999999987642 24455554444 3579
Q ss_pred HHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020845 195 EGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLG 274 (320)
Q Consensus 195 ~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD 274 (320)
+||.+|..+... ...+.+.|.+|+.+|||+||++||.+|++++|++++..+.+++||.++|+||||+||++|
T Consensus 148 ~G~~~~~~~~~~--------~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD 219 (323)
T CHL00151 148 EGEIRQGLVQFD--------TTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLD 219 (323)
T ss_pred HHHHHHHhcCCC--------CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999776432 236889999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHh-hhHHHHHHH
Q 020845 275 PTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 275 ~~~~~~~~-k~~~~Dl~e 291 (320)
++++++++ |+.++||+|
T Consensus 220 ~~~~~~~~GK~~g~Dl~e 237 (323)
T CHL00151 220 ITSSTESLGKPIGSDLKN 237 (323)
T ss_pred cccChhhhCCCchhhHhc
Confidence 99999888 999999987
No 7
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=3.7e-50 Score=393.70 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhC------CChHHHhhHHHHHHHHHH
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVG------GHREQAIVAAAALHVMHA 115 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g------~~~~~~~~lAaavEliH~ 115 (320)
+.+++....+.|++.|++.+....| .+.++++|++..||||+||+||+++++++| ...+.++.+|++|||||+
T Consensus 97 ~~~~v~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~~~~~~~~~~lAaaiEliH~ 175 (416)
T PLN02857 97 LFEPVADDLQQLNDNLQSIVGAENP-VLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEMIHT 175 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHH
Confidence 4455555666788888888876554 489999999999999999999999999875 224678999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhH
Q 020845 116 ASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVE 195 (320)
Q Consensus 116 asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~ 195 (320)
||||||| |||+ +.+|||+||+|.+||+++|||+||+|++.|++.+++... ..+++++.+.. ..+++
T Consensus 176 ASLIHDD--I~D~-s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~------~~~~~~~s~~~-----~~l~~ 241 (416)
T PLN02857 176 ASLIHDD--VLDE-SDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDN------LEVIKLISQVI-----KDFAS 241 (416)
T ss_pred HHHHHCc--cccC-CcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCc------HHHHHHHHHHH-----HHHHh
Confidence 9999999 8999 889999999999999999999999999999999987642 35666665544 35899
Q ss_pred HHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020845 196 GQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGP 275 (320)
Q Consensus 196 GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~ 275 (320)
||+.|+.+... ...+++.|++|+++|||+||+++|++|++++|++++..+.+++||.++|++|||+||++|+
T Consensus 242 Gei~q~~~~~~--------~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 242 GEIKQASSLFD--------CDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred hHHHHHhcccC--------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999876542 2368999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHh-hhHHHHHHH
Q 020845 276 TEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 276 ~~~~~~~-k~~~~Dl~e 291 (320)
+++++++ |+.++||+|
T Consensus 314 ~~~~~~~GK~~g~DL~e 330 (416)
T PLN02857 314 TQSTEQLGKPAGSDLAK 330 (416)
T ss_pred cCCHHHhCCCcchhhhc
Confidence 9999988 999999997
No 8
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=3.7e-50 Score=393.73 Aligned_cols=219 Identities=17% Similarity=0.208 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhhccCCcccHHhHHHhhccCC--CCcchHHHHHHHHHHhCCCh-----------------HHHhhHHHHH
Q 020845 50 HEDIGAHLRQAVVVKEPVEVYEPMRHFVFAA--PVNMAPALCVAACELVGGHR-----------------EQAIVAAAAL 110 (320)
Q Consensus 50 ~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~lAaav 110 (320)
.+.|++.|++.+....| .+.+++.|++..| |||+||+|++++++++|.+. ++++.+|++|
T Consensus 92 L~~v~~~L~~~v~~~~~-~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~Aaav 170 (422)
T PLN02890 92 LSLLANKLRSMVVAEVP-KLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEIT 170 (422)
T ss_pred HHHHHHHHHHHHccCCh-HHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHH
Confidence 44567778887776554 4999999999888 99999999999999998642 3478999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhch
Q 020845 111 HVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 190 (320)
Q Consensus 111 EliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~ 190 (320)
|+||+||||||| |||+ +++|||+||+|.+||++.||++||||++.|++.+++... ..+++.+.+. +
T Consensus 171 EliH~ASLVHDD--IiD~-s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~------~~~~~~~s~a---~-- 236 (422)
T PLN02890 171 EMIHVASLLHDD--VLDD-ADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKN------TEVVSLLATA---V-- 236 (422)
T ss_pred HHHHHHHHHHcc--cccC-CCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHH---H--
Confidence 999999999999 8999 789999999999999999999999999999999987632 3555555443 3
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
..+++||++|+.+..+ ...++++|++++.+|||+||+++|.+||+++|++++..+.+++||.++|+||||+|
T Consensus 237 ~~l~~Gq~ld~~~~~~--------~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~D 308 (422)
T PLN02890 237 EHLVTGETMQITSSRE--------QRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLID 308 (422)
T ss_pred HHHHHHHHHHHHhccC--------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988752 23689999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHh-hhHHHHHHH
Q 020845 271 RRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 271 D~lD~~~~~~~~-k~~~~Dl~e 291 (320)
|++|++++++++ |+.++||+|
T Consensus 309 DiLD~~g~~~~~GK~~g~DL~e 330 (422)
T PLN02890 309 DVLDFTGTSASLGKGSLSDIRH 330 (422)
T ss_pred HHHhhcCChhhhCCCchhhHhc
Confidence 999999999988 999999998
No 9
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.7e-49 Score=375.84 Aligned_cols=260 Identities=28% Similarity=0.381 Sum_probs=217.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhccC-CcccHHhHHHhhccCCCCcchHHHHHHHHHHhC-CChHHHhhHHHHHHHHHH
Q 020845 38 TPNKNKSYWTSVHEDIGAHLRQAVVVK-EPVEVYEPMRHFVFAAPVNMAPALCVAACELVG-GHREQAIVAAAALHVMHA 115 (320)
Q Consensus 38 ~~~~~~~~~~~~~~~ie~~L~~~i~~~-~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g-~~~~~~~~lAaavEliH~ 115 (320)
..+++..|+..-.+.+...+...++.. .|..+.++++|.+..+|||+||.+|+++|+++| |....+..+|+++||||+
T Consensus 63 ~~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~g~~~~q~~~A~i~EMIHt 142 (384)
T KOG0776|consen 63 LLFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAGGKRVRPLLCLAACELVGSGDESSQRSLAEIVEMIHT 142 (384)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhcccccCchhhhhHHHhccccccHHHHHHHHHHHHHHH
Confidence 346788999888888999998888866 667799999999999999999999999999999 888889999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhH
Q 020845 116 ASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVE 195 (320)
Q Consensus 116 asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~ 195 (320)
+||||||+|+||+ +.+|||+||.|+.||+++|||+||||++.|++.++.+.++ .....+.+++.++ +.
T Consensus 143 aSLIHDDv~~mD~-~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~--~v~elm~~aI~dL---------v~ 210 (384)
T KOG0776|consen 143 ASLIHDDVPCMDD-ADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENP--VVVELMASAIADL---------VR 210 (384)
T ss_pred HHHHhcCcccccc-cccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCc--hHHHHHHHHHHHH---------HH
Confidence 9999999999999 7789999999999999999999999999999999998753 2234444555544 45
Q ss_pred HHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020845 196 GQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGP 275 (320)
Q Consensus 196 GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~ 275 (320)
|++.+......+-+. .+...++|+.+..+|||+|++.+|++|++++|.++++++.+++||+++|++||+.||++|+
T Consensus 211 ge~~~~~~~~~~~d~----~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildf 286 (384)
T KOG0776|consen 211 GEFTQGLVAGEGLDL----DDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDF 286 (384)
T ss_pred hhhhccccccccccc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 555554433210000 1247899999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHh-hhHHHHHHH-----hccCCHHHHHHHHHHHhccccc
Q 020845 276 TEEIEEL-KKLAFKLRE-----VNSFNDENAEVIFSLVDDNITH 313 (320)
Q Consensus 276 ~~~~~~~-k~~~~Dl~e-----l~~~~~~~~~~l~~~~~~~~~~ 313 (320)
+...+++ |+.+-|+.. ...|.-|+-+.+.+.+...+..
T Consensus 287 tkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e 330 (384)
T KOG0776|consen 287 TKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSE 330 (384)
T ss_pred ccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccc
Confidence 9888888 999999976 3445566666666666665543
No 10
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=4.1e-49 Score=366.31 Aligned_cols=224 Identities=31% Similarity=0.427 Sum_probs=194.7
Q ss_pred HhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHH
Q 020845 70 YEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTEL 149 (320)
Q Consensus 70 ~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AI 149 (320)
.+++.|++..+|||+||.||+++++++|++++.+..+|++||+||+||||||| |+|+ |.+|||+||+|.+||++.||
T Consensus 2 ~~~~~~~~~~~GK~~Rp~l~~~~~~~~~~~~~~~~~~a~avEliH~asLIhDD--I~D~-s~~RRG~pt~~~~~G~~~Ai 78 (260)
T PF00348_consen 2 LEPARYYILRGGKRIRPLLVLLAAEALGGDPEKAIPLAAAVELIHAASLIHDD--IIDN-SDLRRGKPTVHKKFGNAIAI 78 (260)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH--HHTT-CSEETTEECHHHHHHHHHHH
T ss_pred hHHHHHHhhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhh--hhcc-cccCCCCccccccccccchh
Confidence 46788888899999999999999999999999999999999999999999999 8999 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhc
Q 020845 150 LVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKK 229 (320)
Q Consensus 150 l~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~K 229 (320)
|+||+|++.|++.+++.... .+......++..+...+ .....||..|+.+... ..+++.|.+|+++|
T Consensus 79 l~gd~ll~~a~~~l~~~~~~--~~~~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~---------~~~~~~y~~i~~~K 145 (260)
T PF00348_consen 79 LAGDYLLALAFELLARLGHF--DPSERVLRILELFIEAL--IEGEIGQALDLANEDK---------DPTEEEYLEIIRLK 145 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCHS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTS---------STSHHHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHhc--ccceeehhhccccccc---------cccHHHHHHHHhhc
Confidence 99999999999999998621 01244555555555443 3457779999987742 36899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHHHH----------hccCCHH
Q 020845 230 EGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKLRE----------VNSFNDE 298 (320)
Q Consensus 230 Tg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl~e----------l~~~~~~ 298 (320)
||+||++||++|++++|++++.++.+++||.++|++|||+||++|++++++++ |++++||+| ++...++
T Consensus 146 Tg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~ 225 (260)
T PF00348_consen 146 TGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREE 225 (260)
T ss_dssp THHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999998887 889999998 6666666
Q ss_pred HHHHHHHHHhc
Q 020845 299 NAEVIFSLVDD 309 (320)
Q Consensus 299 ~~~~l~~~~~~ 309 (320)
+++.+.++.+.
T Consensus 226 ~~~~l~~~~~~ 236 (260)
T PF00348_consen 226 LRELLQEAYGK 236 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 66666666544
No 11
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=2.6e-47 Score=353.86 Aligned_cols=206 Identities=31% Similarity=0.417 Sum_probs=184.5
Q ss_pred ccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh-HHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCCh
Q 020845 67 VEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR-EQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP 145 (320)
Q Consensus 67 ~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~-~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~ 145 (320)
..+.++++|++..+|||+||.|++++++++|+++ +.+..+|+++|++|+||||||| |+|+ +.+|||+||+|.+||+
T Consensus 4 ~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g~~~~~~~~~la~aiEllh~asLIhDD--I~D~-s~~RRG~p~~~~~~G~ 80 (259)
T cd00685 4 ELLREALRYLLLAGGKRLRPLLVLLAARALGGPELEAALRLAAAIELLHTASLVHDD--VMDN-SDLRRGKPTVHKVFGN 80 (259)
T ss_pred hHHHHHHHHHHHcCCccHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhh--hccC-CcccCCCCcHHHHhCc
Confidence 3588999999889999999999999999999988 8999999999999999999999 8999 7789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHH
Q 020845 146 NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYET 225 (320)
Q Consensus 146 ~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~i 225 (320)
..|||+||+|++.+++++++...+ ...+++..+++.+ .+++.||++|+.+... ...+++.|.+|
T Consensus 81 ~~Ail~gd~l~~~a~~~l~~~~~~------~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~--------~~~~~~~y~~~ 144 (259)
T cd00685 81 ATAILAGDYLLARAFELLARLGNP------YYPRALELFSEAI--LELVEGQLLDLLSEYD--------TDVTEEEYLRI 144 (259)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCc------cHHHHHHHHHHHH--HHHHHHHHHHHHccCC--------CCCCHHHHHHH
Confidence 999999999999999999987531 2233444444443 5799999999998752 13689999999
Q ss_pred HHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHHHH
Q 020845 226 YKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 226 i~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl~e 291 (320)
+.+|||+||+++|.+|+++++++++.++.+++||.++|++|||+||++|++++++++ |+.++||++
T Consensus 145 ~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~ 211 (259)
T cd00685 145 IRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLRE 211 (259)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHc
Confidence 999999999999999999999999999999999999999999999999999999877 889999976
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=2.9e-35 Score=267.95 Aligned_cols=186 Identities=28% Similarity=0.387 Sum_probs=167.2
Q ss_pred chHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccccc-CChhHHHHHHHHHHHHHHHH
Q 020845 84 MAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHA-FKPNTELLVADAMLPFGLEL 162 (320)
Q Consensus 84 lRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~-~G~~~AIl~GD~L~~~a~~l 162 (320)
+||.+++++++++|++.+.+..+++++|++|++++|||| |+|+ +..|||+||+|.+ ||...|+++||++++.+++.
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DD--I~D~-~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~ 77 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDD--IVDD-SDLRRGKPTAHLRRFGNALAILAGDYLLARAFQL 77 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcc--cccC-CccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999 8999 7789999999999 99999999999999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHH
Q 020845 163 LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGA 242 (320)
Q Consensus 163 l~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Ga 242 (320)
+.+.. ...+.+++.+.. .++++||.+|+.+... ...++++|.+++++|||.+|+.+|.+++
T Consensus 78 l~~~~------~~~~~~~~~~~~-----~~~~~Gq~~Dl~~~~~--------~~~t~~~y~~~~~~Kta~l~~~~~~~~~ 138 (236)
T cd00867 78 LARLG------YPRALELFAEAL-----RELLEGQALDLEFERD--------TYETLDEYLEYCRYKTAGLVGLLCLLGA 138 (236)
T ss_pred HHhCC------hHHHHHHHHHHH-----HHHHHHHHHHHHhccC--------CCCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 98763 234455554433 4689999999988752 1368999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHH
Q 020845 243 ILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKLRE 291 (320)
Q Consensus 243 ilag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl~e 291 (320)
++++.+++..+.+.+||.++|++|||.||++|+.+|.+++++.++||++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~ 187 (236)
T cd00867 139 GLSGADDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGKVGSDLRE 187 (236)
T ss_pred HHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCccHHHHHc
Confidence 9999998889999999999999999999999999999888449999987
No 13
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=253.98 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc-CCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh-------HHHhhHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVV-KEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR-------EQAIVAAAALHV 112 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~-~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~-------~~~~~lAaavEl 112 (320)
+|......+.+.|.+.+...-.. ..-.++.+.+.|.+ .|||..|...++.+.+++.++. ..+..++|+||+
T Consensus 11 ~f~~~f~~~vr~i~~~~~~~~~~~da~~~~~~~L~yN~-~GGK~nRgl~vv~s~~~L~~~~~l~~~~~~~a~~lGw~vEl 89 (347)
T KOG0711|consen 11 DFLQVFPVLVRVLTEDLMAHGESGDATEWLKEVLDYNV-IGGKLNRGLSVVDSFKALVEPRKLDEEELQLALILGWCVEL 89 (347)
T ss_pred HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccC-cccccccchhHHHHHHHhcCccCCCHHHHHHHHHHHHHHHH
Confidence 34455555555554443322111 11245777888986 7999999999999999886631 457889999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccccCCh-hHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchh
Q 020845 113 MHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP-NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQ 191 (320)
Q Consensus 113 iH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~-~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~ 191 (320)
++++.||.|| |||+ |.+|||+||||.+-|+ -.|||.+-+|-+.-+.+|.+.... .....++.+++.++..
T Consensus 90 LQaffLiaDD--IMDn-S~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~-~~~y~~l~elf~ev~f----- 160 (347)
T KOG0711|consen 90 LQAFFLVADD--IMDN-SKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRN-IYCYVDLVELFHEVTF----- 160 (347)
T ss_pred HHHHHHHhhh--hhcc-ccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccC-CccHHHHHHHHHHHHH-----
Confidence 9999999999 8999 9999999999999999 469999888877778888765431 2245667788877664
Q ss_pred hhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHH
Q 020845 192 GVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGGG-SEKEIELLRRYGFYVGMIQGIV 269 (320)
Q Consensus 192 ~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag~-~~~~~~~l~~~G~~lG~afQi~ 269 (320)
.++.||.++-.... .++ ...+++.|..|+++|||.+ |.+|.++|.+++|. +.+.......+...+|..||++
T Consensus 161 ~T~lGdllt~~~~~--~~l----s~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQ 234 (347)
T KOG0711|consen 161 QTELGDLLTTPEGN--KDL----SKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQ 234 (347)
T ss_pred HHhhhccccCcccc--hhH----hhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcc
Confidence 37888766543322 122 2478999999999999999 99999999999994 5667888999999999999999
Q ss_pred hhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHh
Q 020845 270 SRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVD 308 (320)
Q Consensus 270 DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~ 308 (320)
||++|++|||+.++++|+||++ +|++++||.+.+..-+.
T Consensus 235 DDYLd~fgDp~vtgkiGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~yg 283 (347)
T KOG0711|consen 235 DDYLDCFGDPEVTGKIGTDIQDNKCSWLVVKALQRASAEQYKILFENYG 283 (347)
T ss_pred hHHHHhcCChhhcCCCCCccccCceeeehHHHHhhcCHHHHHHHHHhcC
Confidence 9999999999999999999987 89999999998866443
No 14
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.3e-31 Score=234.36 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=175.5
Q ss_pred ccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChh
Q 020845 67 VEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPN 146 (320)
Q Consensus 67 ~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~ 146 (320)
..+.+|+.|++..+||.+|--|.+++.+++..+.++...+..++||+|++||..|| |.|+ |.+|||.|+.|..||++
T Consensus 21 ~ill~Py~yilq~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDD--IEDN-s~LRRG~pvaHsIyGvp 97 (322)
T KOG0777|consen 21 SILLKPYNYILQKPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDD--IEDN-SPLRRGQPVAHSIYGVP 97 (322)
T ss_pred HHHhchHHHHHhCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeecc--cccc-chhhcCCcchhhhccCc
Confidence 45788999999999999999999999999999999999999999999999999999 8999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHH
Q 020845 147 TELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETY 226 (320)
Q Consensus 147 ~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii 226 (320)
..||+++|+++.|.+.++++.+| ...+++.+ .+ .+++.||.+|++|+.. + ..++++.|..|+
T Consensus 98 StINtANY~yFlalekV~qLdhP------~a~kifte---qL--leLHrGQGldIYWRD~------~-tcPtee~Yk~Mv 159 (322)
T KOG0777|consen 98 STINTANYMYFLALEKVSQLDHP------NAIKIFTE---QL--LELHRGQGLDIYWRDF------L-TCPTEEMYKNMV 159 (322)
T ss_pred chhhhhHHHHHHHHHHHHhcCCc------hHHHHHHH---HH--HHHhcCCCcceeeecc------C-cCCCHHHHHHHH
Confidence 99999999999999999999754 34556543 22 4689999999999974 1 237899999999
Q ss_pred HhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhH-HHhhhHHHHHHH
Q 020845 227 KKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEI-EELKKLAFKLRE 291 (320)
Q Consensus 227 ~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~-~~~k~~~~Dl~e 291 (320)
..|||.||.++.++.-.++...+ .+..+-..+|+.|||+||++++...+ ++-|.+|+||.|
T Consensus 160 ~~KTGGLF~La~rLMqlfS~~ke----dl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTE 221 (322)
T KOG0777|consen 160 MNKTGGLFRLALRLMQLFSHHKE----DLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTE 221 (322)
T ss_pred HHhcccHHHHHHHHHHHHHhcch----hHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhcc
Confidence 99999999999999999885443 57778888999999999999997533 333999999998
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.78 E-value=3e-17 Score=145.69 Aligned_cols=156 Identities=26% Similarity=0.300 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCccccc---CChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q 020845 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHA---FKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRV 180 (320)
Q Consensus 104 ~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~---~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~ 180 (320)
..++.+++.+|+++++||| |+|+ +..|++.|++|.. +|...+++.|+.++..+++.+.+... ......
T Consensus 13 ~~~~~~~~~~~~~~~~~DD--i~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 83 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDD--IVDD-SGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGS------PEALEI 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhh--cccC-CCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCC------HHHHHH
Confidence 6889999999999999999 8999 7789999999998 99999999999999999999887532 233344
Q ss_pred HHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 020845 181 MVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGF 260 (320)
Q Consensus 181 i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~ 260 (320)
+.+.. .+++.||..|+.+... ..++.++|..+++.|||.++...+..++...+.+......+.+++.
T Consensus 84 ~~~~~-----~~~~~g~~~d~~~~~~--------~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (243)
T cd00385 84 LAEAL-----LDLLEGQLLDLKWRRE--------YVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGR 150 (243)
T ss_pred HHHHH-----HHHHHHHHHHHHhccC--------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 43322 4589999999998752 1268999999999999999999999999888877777889999999
Q ss_pred HHHHHHHHHhhhcCCchhHHH
Q 020845 261 YVGMIQGIVSRRLGPTEEIEE 281 (320)
Q Consensus 261 ~lG~afQi~DD~lD~~~~~~~ 281 (320)
++|+++|+.||+.|+..+.+.
T Consensus 151 ~~g~~~ql~nDl~~~~~e~~~ 171 (243)
T cd00385 151 ALGLAFQLTNDLLDYEGDAER 171 (243)
T ss_pred HHHHHHHHHHHHHhccCCHHH
Confidence 999999999999999987765
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.37 E-value=0.006 Score=55.30 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=70.1
Q ss_pred ChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHH
Q 020845 99 HREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRIL 178 (320)
Q Consensus 99 ~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~ 178 (320)
.++.....+.++-++|+|..+||. +|+ +..+.+...- .....||+|||.-+.-|.+|++.+. -
T Consensus 31 ~~~~~~~~~~a~~LVq~aLDtHd~---V~~-~~~~~~~~~k----~RQLtVLAGDy~S~~yY~lLA~~~~------i--- 93 (212)
T PF07307_consen 31 SEEEAERYALATMLVQIALDTHDE---VDN-AGDESEESSK----ERQLTVLAGDYYSGLYYQLLAESGD------I--- 93 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhh---hcc-ccccccHHHH----hhhhhhhhHHHHHHHHHHHHHhCCC------H---
Confidence 567889999999999999999999 444 2222222111 1256999999999999999999864 1
Q ss_pred HHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHH
Q 020845 179 RVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACG 237 (320)
Q Consensus 179 ~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a 237 (320)
.++..++.++ .++.+....= ..... ...++++..+..-+|+.+..++
T Consensus 94 ~li~~ls~aI--~eiNE~K~~l-y~~~~---------~~~e~~~~~~~~ies~l~~~~~ 140 (212)
T PF07307_consen 94 SLIRALSEAI--KEINELKMSL-YQKKK---------ETAEEYLESVVTIESALFQSFA 140 (212)
T ss_pred HHHHHHHHHH--HHHHHHHHHH-HHhhh---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544 4455555532 22210 1235556666666776665554
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=90.93 E-value=3.9 Score=37.86 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.++++|...|+.... ..+.+++..-+..-.|....+.+. +++.... +....++.++|.|+|+.|
T Consensus 96 ~~li~g~~~Dl~~~~----------~~t~~eL~~Y~~~vAg~vg~l~~~---i~~~~~~---~~~~~~A~~lG~Alqltn 159 (265)
T cd00683 96 RDLLAGMAMDLDKRR----------YETLDELDEYCYYVAGVVGLMLLR---VFGASSD---EAALERARALGLALQLTN 159 (265)
T ss_pred HHHHHHHHHhCCCCC----------CCCHHHHHHHHHHhHHHHHHHHHH---HhCCCCC---hHHHHHHHHHHHHHHHHH
Confidence 567899999988543 257788777677766666555443 3332111 346689999999999998
Q ss_pred hhcCCchhH
Q 020845 271 RRLGPTEEI 279 (320)
Q Consensus 271 D~lD~~~~~ 279 (320)
=+.|+..|.
T Consensus 160 ilRdv~eD~ 168 (265)
T cd00683 160 ILRDVGEDA 168 (265)
T ss_pred HHHHHHHHH
Confidence 776665543
No 18
>PLN02632 phytoene synthase
Probab=90.18 E-value=4.8 Score=38.96 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=51.3
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHH
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGS--EKEIELLRRYGFYVGMIQGI 268 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~--~~~~~~l~~~G~~lG~afQi 268 (320)
.+++.|...|+.... ..|.+++..-++.-.|....+.+.+ ++..+ ....+.+...+.++|+|+|+
T Consensus 143 ~~li~g~~~Dl~~~~----------~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQl 209 (334)
T PLN02632 143 RDMIEGMRMDLVKSR----------YENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQL 209 (334)
T ss_pred HHHHHHHHHHhccCC----------CCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHH
Confidence 457899999987543 2578887776677666666655543 33222 22234567889999999999
Q ss_pred HhhhcCCchhH
Q 020845 269 VSRRLGPTEEI 279 (320)
Q Consensus 269 ~DD~lD~~~~~ 279 (320)
.|=+.|+-.|.
T Consensus 210 tNILRDv~eD~ 220 (334)
T PLN02632 210 TNILRDVGEDA 220 (334)
T ss_pred HHHHHHHHHHH
Confidence 99777776553
No 19
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=89.42 E-value=14 Score=34.33 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=51.0
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.++++|+..|+.... ..|.++++.-++.-.|.+..+.+.+ ++..+ +....++.++|.++|+.|
T Consensus 88 ~~li~g~~~Dl~~~~----------~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~----~~~~~~a~~lG~Alqltn 150 (266)
T TIGR03465 88 LEVIDGMEMDLEQTR----------YPDFAELDLYCDRVAGAVGRLSARI---FGATD----ARTLEYAHHLGRALQLTN 150 (266)
T ss_pred HHHHHHHHHHcCCCC----------CCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC----hhHHHHHHHHHHHHHHHH
Confidence 457899999987553 2578888777777666776665543 33333 235778999999999999
Q ss_pred hhcCCchhH
Q 020845 271 RRLGPTEEI 279 (320)
Q Consensus 271 D~lD~~~~~ 279 (320)
=+.|+..|.
T Consensus 151 ilRdv~eD~ 159 (266)
T TIGR03465 151 ILRDVGEDA 159 (266)
T ss_pred HHHHhHHHH
Confidence 887776554
No 20
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=87.69 E-value=2.8 Score=40.75 Aligned_cols=88 Identities=11% Similarity=0.001 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 020845 177 ILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLR 256 (320)
Q Consensus 177 ~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~ 256 (320)
...++..+.+ .|..|...|+..... +. .|.++|..-+.+=-|.-=.+.+.+-+. .|...+......
T Consensus 102 ~~~~I~~~~~-----~M~~GMa~dl~~~~~-------~~-~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~ 167 (336)
T TIGR01559 102 YQEVIADITR-----RMGNGMADFIDKEVT-------NE-QTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESE 167 (336)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhcCcC-------CC-CCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhH
Confidence 4455555554 467899888765431 01 467777655544444333333333222 222211122346
Q ss_pred HHHHHHHHHHHHHhhhcCCchh
Q 020845 257 RYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 257 ~~G~~lG~afQi~DD~lD~~~~ 278 (320)
.++..+|+++|+.|=+.|+-.|
T Consensus 168 ~~A~~lG~aLQlTNIlRDv~ED 189 (336)
T TIGR01559 168 ALSNSMGLFLQKTNIIRDYLED 189 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 7999999999999877776655
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=86.61 E-value=26 Score=32.50 Aligned_cols=71 Identities=1% Similarity=-0.041 Sum_probs=48.4
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.++++|...|+.... ..|.++++.-+++-.|....+.+. +++..+++ ...++.++|.|+|+.|
T Consensus 89 ~~li~~~~~Dl~~~~----------~~t~~eL~~Y~~~vAg~vg~l~~~---i~g~~~~~----~~~~A~~lG~AlQltn 151 (266)
T TIGR03464 89 LDLLDAFRQDVVVTR----------YATWAELLDYCRYSANPVGRLVLD---LYGASDPE----NVALSDAICTALQLIN 151 (266)
T ss_pred HHHHHHHHHhccCCC----------CCCHHHHHHHHHHhHHHHHHHHHH---HcCCCChh----HHHHHHHHHHHHHHHH
Confidence 356888888887543 257888776666666666666543 34433332 3468999999999999
Q ss_pred hhcCCchh
Q 020845 271 RRLGPTEE 278 (320)
Q Consensus 271 D~lD~~~~ 278 (320)
=+.|+..|
T Consensus 152 iLRDl~eD 159 (266)
T TIGR03464 152 FWQDVGVD 159 (266)
T ss_pred HHHhhHHH
Confidence 77777654
No 22
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=73.53 E-value=8.4 Score=35.43 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=51.9
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.++++|...|+.... ..|.+++..-+++-+|++..+.+.+...- .+. .....++.++|.++|+.|
T Consensus 94 ~~li~~~~~dl~~~~----------~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~n 158 (267)
T PF00494_consen 94 LELIDGMEMDLEFTP----------YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTN 158 (267)
T ss_dssp HHHHHHHHHCTT-S------------SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHH
Confidence 457889999987654 25888888888888888777755433221 222 467888999999999999
Q ss_pred hhcCCchh
Q 020845 271 RRLGPTEE 278 (320)
Q Consensus 271 D~lD~~~~ 278 (320)
=+.|+..|
T Consensus 159 ilRd~~~D 166 (267)
T PF00494_consen 159 ILRDIPED 166 (267)
T ss_dssp HHHTHHHH
T ss_pred HHHHhHHH
Confidence 88777766
No 23
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=71.30 E-value=5.3 Score=30.97 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020845 249 EKEIELLRRYGFYVGMIQGIV 269 (320)
Q Consensus 249 ~~~~~~l~~~G~~lG~afQi~ 269 (320)
+...+.+-+||..+|-+||+.
T Consensus 15 et~~e~llRYGLf~GAIFQli 35 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLI 35 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999996
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=70.87 E-value=77 Score=30.14 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=44.9
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.+++.|+..|+..... .+.+++..-+.+ ||..... .+..+++-.+ ..........+|.++|+.+
T Consensus 106 ~~~~da~~~Dl~~~~y----------~~~~eL~~Yc~~-vAg~vG~--l~~~Il~~~~---~~~~~~~a~~lG~A~QlvN 169 (288)
T COG1562 106 PALIDAMRMDLDRTRY----------LDFEELEEYCYG-VAGAVGL--LLARILGPDK---DAATRAYARGLGLALQLVN 169 (288)
T ss_pred HHHHHHHHHHhhhccc----------cCHHHHHHHHHH-hHHHHHH--HHHHHhCccc---chhhHHHHHHHHHHHHHHH
Confidence 4578999999987652 356666543444 3333222 2344554432 2345555666999999999
Q ss_pred hhcCCchhH
Q 020845 271 RRLGPTEEI 279 (320)
Q Consensus 271 D~lD~~~~~ 279 (320)
=+.|+-.|-
T Consensus 170 ilRdv~eD~ 178 (288)
T COG1562 170 ILRDVGEDR 178 (288)
T ss_pred HHHHhHHHH
Confidence 888877654
No 25
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
Probab=47.68 E-value=1.6e+02 Score=28.30 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=99.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHH-hCCChHHHhhHH
Q 020845 38 TPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACEL-VGGHREQAIVAA 107 (320)
Q Consensus 38 ~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~-~g~~~~~~~~lA 107 (320)
-+..|+.+.+++.+.+++.+.+.++......+.|...|+..+=|-..| ..++.+.|-. +|.= ......|
T Consensus 79 GN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~~L~~lg~l-~~~d~~a 157 (299)
T PF03095_consen 79 GNKAFRTWHDKLEEEAPSLLEDILPSSLCGAIIELSYYLLNSFGNSTRIDYGTGHELSFLAFLCCLFKLGIL-TEEDYPA 157 (299)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHSTGGGGGGHHHHHHHHHTSSSBTTTTEEEHHHHHHHHHHHHHHHHTTSS-TCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHhCcCCCeeeecCcHHHHHHHHHHHHHHHcCCC-Cccccce
Confidence 345689999999999999999999875555688899999988899888 4566666543 3331 2233667
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHH-HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 020845 108 AALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADA-MLPFGLELLASSDNPAGNNSGRILRVMVEMTR 186 (320)
Q Consensus 108 aavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~-L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~ 186 (320)
.++-+++.+.-+.-- ++..=.... .--|-+||.+ |+ .+..-+.... ..++ ...+..
T Consensus 158 ~vL~vF~~Yl~l~R~--Lq~~Y~LEP---AGSHGVWGLD------Dy~fLPfi~GsaQ-~~~~-~~~P~~---------- 214 (299)
T PF03095_consen 158 LVLRVFNRYLELVRR--LQSTYRLEP---AGSHGVWGLD------DYQFLPFIFGSAQ-LDHP-PIKPKS---------- 214 (299)
T ss_dssp HHHTHHHHHHHHHHH--HHHHCT-EE---CSCCCCCSSS------SS-SHHHHHHHHH-TTTS-SGGGGG----------
T ss_pred eeeeeHHHHHHHHHH--HHHheeecc---CCCCCCCccc------cceeecccccccc-ccCC-CCChHH----------
Confidence 778888888877777 344311111 2246677765 32 1111111111 2211 011111
Q ss_pred HhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCH
Q 020845 187 AMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSE 249 (320)
Q Consensus 187 a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~ 249 (320)
+..-..++-.... ..-.+.+..|.+-|||.+.+.+-.+=-|.+-.+-
T Consensus 215 ------i~~~~~v~~~~~~----------yly~~~I~fI~~~K~gpf~ehSp~L~~Is~v~~W 261 (299)
T PF03095_consen 215 ------ILDPDIVEEYRDD----------YLYLDCIDFINKVKTGPFREHSPMLWDISGVPSW 261 (299)
T ss_dssp ------GGSHHHHHHHTTT-----------HHHHHHHHHHHHTTS-HHHHSHHHHHHTTSSSH
T ss_pred ------hcCHHHHHHhccc----------ccHHHHHHHHHHhCCCcHHHHhHHHHhhhcCCCC
Confidence 2222222222111 0123445567889999999988878777776653
No 26
>PRK10581 geranyltranstransferase; Provisional
Probab=40.73 E-value=2.7e+02 Score=26.45 Aligned_cols=64 Identities=11% Similarity=-0.039 Sum_probs=46.7
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcC
Q 020845 102 QAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167 (320)
Q Consensus 102 ~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~ 167 (320)
....+...-+.+=.|+=|.|| |.|= | ++.+.|++|+-..+|...|....+-++..|.+.|...+
T Consensus 204 ~~~~l~~~g~~lG~aFQI~DD--ilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 204 ALPVLDRYAESIGLAFQVQDD--ILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445566666888889999999 7882 1 23567788877777777777666777777888888775
No 27
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=39.84 E-value=1.1e+02 Score=29.09 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=47.4
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHH
Q 020845 102 QAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLA 164 (320)
Q Consensus 102 ~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~ 164 (320)
...-++.++=++-++.++.-+ +.|-+.+.+.|+.|+-.++|.+.|....-.++..++-.+.
T Consensus 161 ~~~l~~~~~~~~~~a~~ii~~--irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 161 ALWAVLAAFFLWGMASHAFGA--VQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777889999999 5555555678999999999999999888887777765544
No 28
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=37.15 E-value=1.2e+02 Score=22.52 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhccCCc-ccHHhHHHhhccCCCCcchHHHHHHHHHH
Q 020845 37 STPNKNKSYWTSVHEDIGAHLRQAVVVKEP-VEVYEPMRHFVFAAPVNMAPALCVAACEL 95 (320)
Q Consensus 37 ~~~~~~~~~~~~~~~~ie~~L~~~i~~~~~-~~l~e~~~y~~~~gGKrlRp~L~l~~~~~ 95 (320)
.+..++.+|..+..+-|++. -+ ..+ ..+.+.+..++..++|...+.++-++...
T Consensus 6 ~S~DPy~DFr~SM~EMI~~~---~i--~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl 60 (66)
T TIGR01568 6 ESDDPYEDFRRSMEEMIEER---EL--EADWKELEELLACYLDLNPKKSHRFIVRAFVDI 60 (66)
T ss_pred CCCChHHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence 34556778888888888765 12 222 45888888888889999999998777654
No 29
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=36.51 E-value=2.3e+02 Score=26.78 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=67.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHH-hCCChHHHhhHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACEL-VGGHREQAIVAAA 108 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~-~g~~~~~~~~lAa 108 (320)
...|+.+.+++.++++..+.+.++......+.|.-.|+..+=|-+.| ..++.+.|.. +|.-. .....|.
T Consensus 56 N~afR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~~RiDYGTGHEL~Fl~fL~~L~~lgil~-~~d~~~~ 134 (266)
T cd04087 56 NKAFRTWHDKLEEELPSLLEELLPEELDEAVNELSYYLLESFGNSTRIDYGTGHELNFLAFLCCLFKLGILT-EEDYGAI 134 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHhccCCCcccccCCchHHHHHHHHHHHHHCCCCC-cchhhHH
Confidence 44588999999999999999988865455688888899888898888 3556555543 23311 1225567
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChh
Q 020845 109 ALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPN 146 (320)
Q Consensus 109 avEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~ 146 (320)
++-+++.+--+.--| |..=....-| -|-+||.+
T Consensus 135 vL~vF~~Yl~l~R~L--q~~Y~LEPAG---SHGvWGLD 167 (266)
T cd04087 135 VLRVFNRYLELVRRL--QLTYRLEPAG---SHGVWGLD 167 (266)
T ss_pred HHHHHHHHHHHHHHH--HHHhccccCC---CCCCCccc
Confidence 777888888777773 4431222223 35566654
No 30
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=32.44 E-value=1.3e+02 Score=28.83 Aligned_cols=56 Identities=5% Similarity=-0.027 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHH
Q 020845 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGL 160 (320)
Q Consensus 103 ~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 160 (320)
..-++...-+...+.++..| +.|-+.+.+.|++|.-..+|.+.+....-+++..++
T Consensus 191 ~~l~~~~~~l~~~~~~~~~d--~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 191 IVILALLYSLGAHGIMTLND--FKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 34444455555666677788 455555568899999999999987766655554443
No 31
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=32.24 E-value=1.3e+02 Score=28.31 Aligned_cols=48 Identities=6% Similarity=-0.082 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHH
Q 020845 110 LHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFG 159 (320)
Q Consensus 110 vEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a 159 (320)
.=++..+.++..++ .|-+.+.|.|++|+=.++|.+.+....-.++..+
T Consensus 174 ~~l~~~~~~~in~i--~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a 221 (282)
T PRK12875 174 GWLWAMGMHTFSAI--PDIEPDRAAGIRTTATVLGERRTYAYCAACWLLA 221 (282)
T ss_pred HHHHHHHHHHHHhc--cCHHHHHHcCCccchhhccHhhHHHHHHHHHHHH
Confidence 34667777888894 5554556899999999999998875444444333
No 32
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=31.86 E-value=92 Score=24.03 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCCchhHHHh-hhHHHHHHHhccCCHHHHHHHHHHHhc
Q 020845 264 MIQGIVSRRLGPTEEIEEL-KKLAFKLREVNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 264 ~afQi~DD~lD~~~~~~~~-k~~~~Dl~el~~~~~~~~~~l~~~~~~ 309 (320)
+||||-| |+.-.-+|++- ..+..+| ++-++++|++.|-+++-.
T Consensus 34 ~A~~iGd-yLA~~vdP~N~EerlLkEL--W~va~e~Eq~~LA~lmvK 77 (81)
T PF11588_consen 34 LAYQIGD-YLAKNVDPKNPEERLLKEL--WDVADEEEQHALANLMVK 77 (81)
T ss_dssp HHHHHHH-HHHT-----SHHHHHHHHH--HHC--HHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHH--HHhCCHHHHHHHHHHHHH
Confidence 3666665 66544455444 3444334 777899999999887654
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=31.49 E-value=2.3e+02 Score=26.45 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHH
Q 020845 101 EQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLE 161 (320)
Q Consensus 101 ~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 161 (320)
..+.-++..+-++-...++..|+ .|-+.+.+.|+.|+-.++|.+.+...--.++..++-
T Consensus 168 ~~~~~~~l~~~l~~~~~~~~n~~--~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 168 SAVFLPALPCGLLIGAVLLANNI--RDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 34566677777888888888995 555445688999999999998876665555555543
No 34
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=30.76 E-value=70 Score=27.30 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHH-----------HH-hccCCHHHHHHHHHHHhccccc
Q 020845 246 GGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKL-----------RE-VNSFNDENAEVIFSLVDDNITH 313 (320)
Q Consensus 246 g~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl-----------~e-l~~~~~~~~~~l~~~~~~~~~~ 313 (320)
+.++++++.+++|...|.-+..=.+++.++.. .+.+..+-++| .- .+...+++++.++++.++-+++
T Consensus 29 tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~-kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~ 107 (142)
T TIGR03042 29 TYSPAQLAQIQRQAEGIEAAKDRLPELASLVA-KEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDD 107 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-hcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHH
Confidence 45678889999999998888877777766653 22222222222 22 4445677777777776655544
No 35
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=29.03 E-value=2.8e+02 Score=25.81 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHH
Q 020845 104 IVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLP 157 (320)
Q Consensus 104 ~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~ 157 (320)
.-++..+-++-.+.+...| +.|-+.+.+.|++|.-..+|.+.+...--.++.
T Consensus 164 ~~~~~~~~l~~~~i~~~nd--~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~ 215 (283)
T TIGR01476 164 VVVALIYSLGAHGIMTLND--FKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccchhhHHHcCCcCcceEEcHHHHHHHHHHHHH
Confidence 3345555566677788999 455444568899999999999987765444433
No 36
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=26.91 E-value=55 Score=29.63 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHH------------hccCCHHHHHHHHHHHhcccccccc
Q 020845 253 ELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKLRE------------VNSFNDENAEVIFSLVDDNITHVLG 316 (320)
Q Consensus 253 ~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl~e------------l~~~~~~~~~~l~~~~~~~~~~~~~ 316 (320)
+++++||-.+=-.---.||+.++.|.. +||+-+++.+ |+.|.++| .+++.++|.-||
T Consensus 134 eAvEeFgG~L~tLrm~idDl~GlsGEn--v~PLP~~~~~Al~t~y~rY~~YL~sFgp~E-----~yLrKKVE~ELG 202 (239)
T PF14290_consen 134 EAVEEFGGILVTLRMEIDDLCGLSGEN--VKPLPDYIENALRTAYKRYMTYLDSFGPDE-----HYLRKKVEMELG 202 (239)
T ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHhcCchH-----HHHHHHHHHHhh
Confidence 456667755544445578888888743 3555555543 67777665 344445554444
No 37
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=25.55 E-value=2.8e+02 Score=25.57 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 020845 86 PALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163 (320)
Q Consensus 86 p~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll 163 (320)
....+...-..++......-++..+=++..+..+.-| +.|-+.+.+.|.+|.-..+|.+.+....-.+...++-+.
T Consensus 140 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~ 215 (279)
T PRK12884 140 GMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKD--IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLS 215 (279)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHH
No 38
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=22.69 E-value=3.5e+02 Score=25.64 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHH
Q 020845 103 AIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPF 158 (320)
Q Consensus 103 ~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~ 158 (320)
..-++..+=++-.+.++..| +.|-+.+.|.|++|.-.++|.+.+...-..++..
T Consensus 185 ~~l~~~~~~l~~~~i~~~n~--~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 185 IAVLTLIYSIAGLGIAIVND--FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH--ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence 34444445556667778888 4554444688999999999999887776655443
No 39
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism]
Probab=22.11 E-value=7.3e+02 Score=24.71 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHH
Q 020845 148 ELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYK 227 (320)
Q Consensus 148 AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~ 227 (320)
.++.-+-.+..+|..|.+- ..++++++++.+| .|-..=+-.+. .+.++|..-++
T Consensus 113 ~~l~qf~~v~~ef~~L~e~----------Yqeviaeitk~mg-----~Gma~~~~~~v-----------~ti~d~d~yCh 166 (413)
T KOG1459|consen 113 QLLPQFVVVSGEFLNLGEG----------YQEVIAEITKRMG-----LGMALFIPEEV-----------ETIWDYDVYCH 166 (413)
T ss_pred hhccccccchHHHHHhhHH----------HHHHHHHHHHHHh-----chHHHhhHHHH-----------hHHHHHHHHHH
Confidence 3344444455566666532 3468888887654 34332221111 34555544444
Q ss_pred hcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHhhhcCCchh-----HHHh-hhHHHHHHH--hccCC
Q 020845 228 KKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQG---IVSRRLGPTEE-----IEEL-KKLAFKLRE--VNSFN 296 (320)
Q Consensus 228 ~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQ---i~DD~lD~~~~-----~~~~-k~~~~Dl~e--l~~~~ 296 (320)
+ |+.|...+..---..++ -+.....++.+...+|+.-| |.+|++....| |++. ..-.+.|+. .+..+
T Consensus 167 y-vagLVg~glsrlf~~s~-le~~~~~~e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~ 244 (413)
T KOG1459|consen 167 Y-VAGLVGIGLSRLFTASK-LEDLLARLEQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPEND 244 (413)
T ss_pred H-HHHhhCCchHhhhhHHH-HhhhhhhHHHHhcccchHHHHhHHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccch
Confidence 4 66665444321111111 12245677888888999888 55666555443 2333 444554555 45555
Q ss_pred HHHHHHHHHHHhcccccc
Q 020845 297 DENAEVIFSLVDDNITHV 314 (320)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~ 314 (320)
+.-..=|...+.++..|+
T Consensus 245 dl~l~Cln~m~tnaL~hv 262 (413)
T KOG1459|consen 245 DLALQCLNEMVTNALMHV 262 (413)
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 555666666666666554
No 40
>KOG2867 consensus Phosphotyrosyl phosphatase activator [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=20.63 E-value=4.1e+02 Score=26.15 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHHhCCChHHHhhHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACELVGGHREQAIVAAAA 109 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~~g~~~~~~~~lAaa 109 (320)
...++.|++++.+.+.+.+.+.++......+.|...|+..+=|-..| ..++++.|...-|--..-...|++
T Consensus 93 n~AyR~w~~kl~~~~~~ll~~~~p~~~~~~v~El~~Yl~~SFGNs~RIDYGtGHEL~Fl~~L~~L~~~Gil~~~D~~a~v 172 (367)
T KOG2867|consen 93 NKAYRTWYEKLYEELPKLLDEALPSLKHEAVNELGQYLTESFGNSTRIDYGTGHELNFLFFLCALFKLGILDENDYVALV 172 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCcccccccchHHHHHHHHHHHHHHccCcccchhhHHH
Confidence 34578999999999999999999865445688888898877777666 355555554432322223455667
Q ss_pred HHHHHHHHHHHhCC
Q 020845 110 LHVMHAASFIHENL 123 (320)
Q Consensus 110 vEliH~asLIHDDl 123 (320)
+-+++-+-=|..-|
T Consensus 173 l~lF~kYlev~R~L 186 (367)
T KOG2867|consen 173 LRLFNKYLEVMRRL 186 (367)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666664
No 41
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=20.07 E-value=2.1e+02 Score=20.61 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHH
Q 020845 40 NKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACEL 95 (320)
Q Consensus 40 ~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~ 95 (320)
++++.|.++..+-|++.-- .....+.+.+..++....|...+.++-++...
T Consensus 3 DP~~DFr~SM~EMI~~~~i-----~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv 53 (59)
T PF04844_consen 3 DPYEDFRESMVEMIEENGI-----RDWDDLEELLACYLSLNSPEHHKFIVEAFVDV 53 (59)
T ss_pred CHHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 4667777777777754321 13456888888888889999999998877654
Done!